Pregenerated sensors for LCE1E (Mus musculus)

Ensembl gene IDs: ENSMUSG00000068889

Ensembl transcript IDs: ENSMUST00000090867.2

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR CAA 90 bp	CATTTCCCAGGAGATTTCAGGAACTCAGAGTGCAGGACAAGGAGGGAAGCAGGATTCCTCCTGTCCCATTaGTCTGAAGTCTTCCTCACC	+
Preference number: 3 (lower is better) Translates to: HFPGDFRNSECRTRREAGFLLSH*SEVFLT Trigger: GGTGAGGAAGACTTCAGACAAATGGGACAGGAGGAA...TCCTGCTTCCCTCCTTGTCCTGCACTCTGAGTTCCTGAAATCTCCTGGGAAATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090867.2
3UTR TCA 72 bp	TTTGTAACAAAGGGGAAACATGAAATTTTCATATCCTaGGGAGAACATAGAACATTTCCCAGGAGATTTCAG	+
Preference number: 3 (lower is better) Translates to: FVTKGKHEIFIS*GEHRTFPRRFQ Trigger: CTGAAATCTCCTGGGAAATGTTCTATGTTCTCCTCAGGATATGAAAATTTCATGTTTCCCCTTTGTTACAAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090867.2
CDS-3UTR GCA 90 bp	CATTTCCCAGGAGATTTCAGGAACTCAGAGTGCAGGACAAGGAGGGAAGCAGGACAGCAGTCCCCAGACTaGTGGCTACTGCCACAGCAG	+
Preference number: 4 (lower is better) Translates to: HFPGDFRNSECRTRREAGQQSPD*WLLPQQ Trigger: CTGCTGTGGCAGTAGCCAGCAGTCTGGGGACTGCTG...TCCTGCTTCCCTCCTTGTCCTGCACTCTGAGTTCCTGAAATCTCCTGGGAAATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090867.2
CDS-3UTR GCA 90 bp	CATAGAACATTTCCCAGGAGATTTCAGGAACTCAGAGTGCAGGACAAGGAGGGACAGACTGCTGGCTACTaGCACAGCAGCCACTGCTGC	+
Preference number: 4 (lower is better) Translates to: HRTFPRRFQELRVQDKEGQTAGY*HSSHCC Trigger: GCAGCAGTGGCTGCTGTGGCAGTAGCCAGCAGTCTG...TCCCTCCTTGTCCTGCACTCTGAGTTCCTGAAATCTCCTGGGAAATGTTCTATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090867.2
CDS-3UTR CCA 90 bp	CATAGAACATTTCCCAGGAGATTTCAGGAACTCAGAGTGCAGGACAAGGAGGGATTGGGATCTGGCATTTaGGAGGGCATTTGGGGGTGC	+
Preference number: 4 (lower is better) Translates to: HRTFPRRFQELRVQDKEGLGSGI*EGIWGC Trigger: GCACCCCCAAATGCCCTCCCAAATGCCAGATCCCAA...TCCCTCCTTGTCCTGCACTCTGAGTTCCTGAAATCTCCTGGGAAATGTTCTATG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000090867.2
CDS-3UTR CCA 90 bp	CATAGAACATTTCCCAGGAGATTTCAGGAACTCAGAGTGCAGGACAAGGAGGGAGGGAGGACATTTGGGTaGGCATTTTGGAGGGCACTT	+
Preference number: 4 (lower is better) Translates to: HRTFPRRFQELRVQDKEGGRTFG*AFWRAL Trigger: AAGTGCCCTCCAAAATGCCCACCCAAATGTCCTCCC...TCCCTCCTTGTCCTGCACTCTGAGTTCCTGAAATCTCCTGGGAAATGTTCTATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090867.2
CDS-3UTR GCA 90 bp	AACAATGGAGAATCTTCTGAGCATATGTTCCTCCTGTCCCATTTGTCTGAAGTCAGCAGCTACCAGAGCTaGAGCAGCCACCAGAGCTAC	+
Preference number: 4 (lower is better) Translates to: NNGESSEHMFLLSHLSEVSSYQS*SSHQSY Trigger: GTAGCTCTGGTGGCTGCTGCAGCTCTGGTAGCTGCT...GACTTCAGACAAATGGGACAGGAGGAACATATGCTCAGAAGATTCTCCATTGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090867.2
CDS-3UTR CCA 90 bp	AACAATGGAGAATCTTCTGAGCATATGTTCCTCCTGTCCCATTTGTCTGAAGTCGGGCACTTTGGGATCTaGCATTTGGGAGGGCATTTG	+
Preference number: 4 (lower is better) Translates to: NNGESSEHMFLLSHLSEVGHFGI*HLGGHL Trigger: CAAATGCCCTCCCAAATGCCAGATCCCAAAGTGCCC...GACTTCAGACAAATGGGACAGGAGGAACATATGCTCAGAAGATTCTCCATTGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090867.2
CDS-3UTR CCA 90 bp	AAATTTTCATATCCTGAGGAGAACATAGAACATTTCCCAGGAGATTTCAGGAACACTTGGGAGGACATTTaGGTGGGCATTTTGGAGGGC	+
Preference number: 4 (lower is better) Translates to: KFSYPEENIEHFPGDFRNTWEDI*VGILEG Trigger: GCCCTCCAAAATGCCCACCCAAATGTCCTCCCAAGT...GTTCCTGAAATCTCCTGGGAAATGTTCTATGTTCTCCTCAGGATATGAAAATTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090867.2
CDS-3UTR CAA 90 bp	AACATAGAACATTTCCCAGGAGATTTCAGGAACTCAGAGTGCAGGACAAGGAGGCACTTGGGAGGACATTaGGGTGGGCATTTTGGAGGG	+
Preference number: 5 (lower is better) Translates to: NIEHFPGDFRNSECRTRRHLGGH*GGHFGG Trigger: CCCTCCAAAATGCCCACCCAAATGTCCTCCCAAGTG...CCTCCTTGTCCTGCACTCTGAGTTCCTGAAATCTCCTGGGAAATGTTCTATGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090867.2
CDS-3UTR CAA 90 bp	CATAGAACATTTCCCAGGAGATTTCAGGAACTCAGAGTGCAGGACAAGGAGGGAATTTTGGAGGGCACTTaGGGATCTGGCATTTGGGAG	+
Preference number: 5 (lower is better) Translates to: HRTFPRRFQELRVQDKEGILEGT*GSGIWE Trigger: CTCCCAAATGCCAGATCCCAAAGTGCCCTCCAAAAT...TCCCTCCTTGTCCTGCACTCTGAGTTCCTGAAATCTCCTGGGAAATGTTCTATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090867.2
CDS-3UTR CAA 90 bp	AACATAGAACATTTCCCAGGAGATTTCAGGAACTCAGAGTGCAGGACAAGGAGGATTTGGGTGGGCATTTaGGAGGGCACTTTGGGATCT	+
Preference number: 5 (lower is better) Translates to: NIEHFPGDFRNSECRTRRIWVGI*EGTLGS Trigger: AGATCCCAAAGTGCCCTCCAAAATGCCCACCCAAAT...CCTCCTTGTCCTGCACTCTGAGTTCCTGAAATCTCCTGGGAAATGTTCTATGTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090867.2
CDS-3UTR CAA 90 bp	AAATTTTCATATCCTGAGGAGAACATAGAACATTTCCCAGGAGATTTCAGGAACCATTTGGGAGGGCATTaGGGGGTGCACTTTGGAGGA	+
Preference number: 5 (lower is better) Translates to: KFSYPEENIEHFPGDFRNHLGGH*GVHFGG Trigger: TCCTCCAAAGTGCACCCCCAAATGCCCTCCCAAATG...GTTCCTGAAATCTCCTGGGAAATGTTCTATGTTCTCCTCAGGATATGAAAATTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000090867.2
CDS-3UTR CAA 90 bp	AAATTTTCATATCCTGAGGAGAACATAGAACATTTCCCAGGAGATTTCAGGAACTTTGGGATCTGGCATTaGGGAGGGCATTTGGGGGTG	+
Preference number: 5 (lower is better) Translates to: KFSYPEENIEHFPGDFRNFGIWH*GGHLGV Trigger: CACCCCCAAATGCCCTCCCAAATGCCAGATCCCAAA...GTTCCTGAAATCTCCTGGGAAATGTTCTATGTTCTCCTCAGGATATGAAAATTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000090867.2
CDS CCA 72 bp	CCACTGCTGCCACCACTGCTACAGCATCCAGAGCTGTaGCGATGGCGACGAAGAGATCTGCGGGGTCTGTGG	+
Preference number: 6 (lower is better) Translates to: PLLPPLLQHPEL*RWRRRDLRGLW Trigger: CCACAGACCCCGCAGATCTCTTCGTCGCCATCGCCACAGCTCTGGATGCTGTAGCAGTGGTGGCAGCAGTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090867.2