Pregenerated sensors for LCE1D (Mus musculus)
Ensembl gene IDs: ENSMUSG00000103243Ensembl transcript IDs: ENSMUST00000029524.4
Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TCAAGGGGCAGGACAAGGAGGGAAGTAGGAGACCAAAGAGCAGCGTaGCTGAGTCTTCTGAGAATGTGTTCTTTCTGCACCACTTTTCTA | + |
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Preference number: 1 (lower is better) Translates to: SRGRTRREVGDQRAA*LSLLRMCSFCTTFL Trigger: TAGAAAAGTGGTGCAGAAAGAACACATTCTCAGAAGACTCAGCCACGCTGCTCTTTGGTCTCCTACTTCCCTCCTTGTCCTGCCCCTTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029524.4 |
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| 3UTR TCA 90 bp | CAAAGAGGCATTGTCATCTCTGAAGTAGAATGCAGAAACTTTCCCTaGAGATTTCAGCATCTCAAGGGGCAGGACAAGGAGGGAAGTAGG | + |
|
Preference number: 1 (lower is better) Translates to: QRGIVISEVECRNFP*RFQHLKGQDKEGSR Trigger: CCTACTTCCCTCCTTGTCCTGCCCCTTGAGATGCTGAAATCTTCAGGGAAAGTTTCTGCATTCTACTTCAGAGATGACAATGCCTCTTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029524.4 |
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| 3UTR-3UTR GCA 90 bp | CATCTCAAGGGGCAGGACAAGGAGGGAAGTAGGAGACCAAAGAGCAGCGTGGCTAGAATGTGTTCTTTCTaGACCACTTTTCTAGATTCT | + |
|
Preference number: 2 (lower is better) Translates to: HLKGQDKEGSRRPKSSVARMCSF*TTFLDS Trigger: AGAATCTAGAAAAGTGGTGCAGAAAGAACACATTCT...AGCCACGCTGCTCTTTGGTCTCCTACTTCCCTCCTTGTCCTGCCCCTTGAGATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029524.4 |
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| CDS-3UTR GCA 90 bp | GCTGAGTCTTCTGAGAATGTGTTCTTTCTGCACCACTTTTCTAGATTCTTTCTCAGCAGCCTCCAGAACTaGAGCAGCCACCAGAGCTGC | + |
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Preference number: 4 (lower is better) Translates to: AESSENVFFLHHFSRFFLSSLQN*SSHQSC Trigger: GCAGCTCTGGTGGCTGCTGCAGTTCTGGAGGCTGCT...GAGAAAGAATCTAGAAAAGTGGTGCAGAAAGAACACATTCTCAGAAGACTCAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029524.4 |
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