Pregenerated sensors for LCE1C (Mus musculus)

Ensembl gene IDs: ENSMUSG00000042092

Ensembl transcript IDs: ENSMUST00000047055.4

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR CCA 90 bp	AGAGCAGAAAACATGGGCTGGTCTTCCAAACATGGCTTCCTCTGCATAGAATGTCTGCGGGGTCTGTGGTaGCTCAAGCAGCAGCCTCCA	+
Preference number: 4 (lower is better) Translates to: RAENMGWSSKHGFLCIECLRGLW*LKQQPP Trigger: TGGAGGCTGCTGCTTGAGCCACCACAGACCCCGCAG...ACATTCTATGCAGAGGAAGCCATGTTTGGAAGACCAGCCCATGTTTTCTGCTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047055.4
CDS-3UTR GCA 90 bp	AAACATGGGCTGGTCTTCCAAACATGGCTTCCTCTGCATAGAATGTTTGAGATCCTCCACCCCCTGAGCTaGAGCAGCCTCCAGAGCTAC	+
Preference number: 4 (lower is better) Translates to: KHGLVFQTWLPLHRMFEILHPLS*SSLQSY Trigger: GTAGCTCTGGAGGCTGCTGCAGCTCAGGGGGTGGAG...GATCTCAAACATTCTATGCAGAGGAAGCCATGTTTGGAAGACCAGCCCATGTTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047055.4
CDS-3UTR CCA 90 bp	GTCTTCCAAACATGGCTTCCTCTGCATAGAATGTTTGAGATCTTCATGGCACTTTCGGGGTCTGGCACTTaGGAGGGCACTTGGGGGTGC	+
Preference number: 4 (lower is better) Translates to: VFQTWLPLHRMFEIFMALSGSGT*EGTWGC Trigger: GCACCCCCAAGTGCCCTCCCAAGTGCCAGACCCCGA...AAGTGCCATGAAGATCTCAAACATTCTATGCAGAGGAAGCCATGTTTGGAAGAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047055.4
CDS-3UTR CCA 90 bp	TGGTCTTCCAAACATGGCTTCCTCTGCATAGAATGTTTGAGATCTTCATGGCACGATCTGCGGGGTCTGTaGTGGCTCAAGCAGCAGCCT	+
Preference number: 4 (lower is better) Translates to: WSSKHGFLCIECLRSSWHDLRGL*WLKQQP Trigger: AGGCTGCTGCTTGAGCCACCACAGACCCCGCAGATC...GTGCCATGAAGATCTCAAACATTCTATGCAGAGGAAGCCATGTTTGGAAGACCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047055.4
CDS-3UTR GCA 90 bp	TGGTCTTCCAAACATGGCTTCCTCTGCATAGAATGTTTGAGATCTTCATGGCACCAGCAGTCTCCAGACTaGTGGCTACTGCCACAGCAG	+
Preference number: 4 (lower is better) Translates to: WSSKHGFLCIECLRSSWHQQSPD*WLLPQQ Trigger: CTGCTGTGGCAGTAGCCAGCAGTCTGGAGACTGCTG...GTGCCATGAAGATCTCAAACATTCTATGCAGAGGAAGCCATGTTTGGAAGACCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047055.4
CDS-3UTR GCA 90 bp	GGGACAGTTTTAGAACTTGATATAGAATTTCAGCATTTCACAGATGAAGACATGGGCGATGAAGAGATCTaGGGGGTCTGTGGTGGCTCA	+
Preference number: 4 (lower is better) Translates to: GTVLELDIEFQHFTDEDMGDEEI*GVCGGS Trigger: TGAGCCACCACAGACCCCGCAGATCTCTTCATCGCC...CATGTCTTCATCTGTGAAATGCTGAAATTCTATATCAAGTTCTAAAACTGTCCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047055.4
CDS GCA 90 bp	AGCAGCAGTCTCCAGACTGCTGGCTACTGCCACAGCAGCCACTGCTaGCACCACTGCTGCCACAGCAGCCACTGCTACCACCACTGCTGC	+
Preference number: 5 (lower is better) Translates to: SSSLQTAGYCHSSHC*HHCCHSSHCYHHCC Trigger: GCAGCAGTGGTGGTAGCAGTGGCTGCTGTGGCAGCAGTGGTGGCAGCAGTGGCTGCTGTGGCAGTAGCCAGCAGTCTGGAGACTGCTGCT 63% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047055.4

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