Pregenerated sensors for LCE1B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027923Ensembl transcript IDs: ENSMUST00000029531.4
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGAGGATCACCAAGAGTCCAGAATACAAAGCACAACAGAAAGGAATaGCAGGCAGTAGCACTTCTCCACAGCTTGTCTGAAGTGCAAGGG | + |
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Preference number: 1 (lower is better) Translates to: RGSPRVQNTKHNRKE*QAVALLHSLSEVQG Trigger: CCCTTGCACTTCAGACAAGCTGTGGAGAAGTGCTACTGCCTGCCATTCCTTTCTGTTGTGCTTTGTATTCTGGACTCTTGGTGATCCTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029531.4 |
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| CDS-3UTR GCA 90 bp | GTCCAGAATACAAAGCACAACAGAAAGGAATGGCAGGCAGTAGCACTTCTCCACTGCCACAGCAGCCACTaGTACCACCACTGCTGCCAC | + |
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Preference number: 4 (lower is better) Translates to: VQNTKHNRKEWQAVALLHCHSSH*YHHCCH Trigger: GTGGCAGCAGTGGTGGTAGCAGTGGCTGCTGTGGCA...GTGGAGAAGTGCTACTGCCTGCCATTCCTTTCTGTTGTGCTTTGTATTCTGGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029531.4 |
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| CDS-3UTR GCA 90 bp | ACCAAGAGTCCAGAATACAAAGCACAACAGAAAGGAATGGCAGGCAGTAGCACTTGCTACCACCACTGCTaGCACAGCAGCCACTGCTGC | + |
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Preference number: 4 (lower is better) Translates to: TKSPEYKAQQKGMAGSSTCYHHC*HSSHCC Trigger: GCAGCAGTGGCTGCTGTGGCAGCAGTGGTGGTAGCA...AGTGCTACTGCCTGCCATTCCTTTCTGTTGTGCTTTGTATTCTGGACTCTTGGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029531.4 |
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| CDS-3UTR GCA 90 bp | TTTGCAGAGGATCACCAAGAGTCCAGAATACAAAGCACAACAGAAAGGAATGGCCACTGCTACCACCACTaGTGCCACAGCAGCCACTGC | + |
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Preference number: 4 (lower is better) Translates to: FAEDHQESRIQSTTERNGHCYHH*CHSSHC Trigger: GCAGTGGCTGCTGTGGCAGCAGTGGTGGTAGCAGTG...GCCATTCCTTTCTGTTGTGCTTTGTATTCTGGACTCTTGGTGATCCTCTGCAAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029531.4 |
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| CDS-3UTR CCA 90 bp | CAGAGGATCACCAAGAGTCCAGAATACAAAGCACAACAGAAAGGAATGGCAGGCCTTGGGAGGACATTTTaGGGGGCACTTTGGAGGGCA | + |
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Preference number: 4 (lower is better) Translates to: QRITKSPEYKAQQKGMAGLGRTF*GALWRA Trigger: TGCCCTCCAAAGTGCCCCCCAAAATGTCCTCCCAAG...GCCTGCCATTCCTTTCTGTTGTGCTTTGTATTCTGGACTCTTGGTGATCCTCTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029531.4 |
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| CDS-3UTR GCA 90 bp | GAAAGTCACAACTTTGCAGAGGATCACCAAGAGTCCAGAATACAAAGCACAACATGCTGCCACCACTGCTaGCACAGCAGCCACTGCTAC | + |
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Preference number: 4 (lower is better) Translates to: ESHNFAEDHQESRIQSTTCCHHC*HSSHCY Trigger: GTAGCAGTGGCTGCTGTGGCAGCAGTGGTGGCAGCA...TGTTGTGCTTTGTATTCTGGACTCTTGGTGATCCTCTGCAAAGTTGTGACTTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029531.4 |
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| CDS-3UTR CCA 90 bp | TCACAACTTTGCAGAGGATCACCAAGAGTCCAGAATACAAAGCACAACAGAAAGTTGGGGTCTGGCATTTaGGAGGGCACTTGGGGGTGC | + |
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Preference number: 4 (lower is better) Translates to: SQLCRGSPRVQNTKHNRKLGSGI*EGTWGC Trigger: GCACCCCCAAGTGCCCTCCCAAATGCCAGACCCCAA...CTTTCTGTTGTGCTTTGTATTCTGGACTCTTGGTGATCCTCTGCAAAGTTGTGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029531.4 |
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| CDS-3UTR CCA 90 bp | AACTTTGCAGAGGATCACCAAGAGTCCAGAATACAAAGCACAACAGAAAGGAATCTTTGGAGGGCATTTTaGGGTCTGGCATTTGGGAGG | + |
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Preference number: 4 (lower is better) Translates to: NFAEDHQESRIQSTTERNLWRAF*GLAFGR Trigger: CCTCCCAAATGCCAGACCCCAAAATGCCCTCCAAAG...ATTCCTTTCTGTTGTGCTTTGTATTCTGGACTCTTGGTGATCCTCTGCAAAGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029531.4 |
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| CDS-3UTR CAA 90 bp | GAAAGTCACAACTTTGCAGAGGATCACCAAGAGTCCAGAATACAAAGCACAACATTTGGGGTCTGGCATTaGGGAGGGCACTTGGGGGTG | + |
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Preference number: 5 (lower is better) Translates to: ESHNFAEDHQESRIQSTTFGVWH*GGHLGV Trigger: CACCCCCAAGTGCCCTCCCAAATGCCAGACCCCAAA...TGTTGTGCTTTGTATTCTGGACTCTTGGTGATCCTCTGCAAAGTTGTGACTTTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029531.4 |
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| CDS-3UTR CAA 90 bp | TTTGTCATTTTAGGGGAAAGTCACAACTTTGCAGAGGATCACCAAGAGTCCAGAACTTTGGAGGGCATTTaGGGGTCTGGCATTTGGGAG | + |
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Preference number: 5 (lower is better) Translates to: FVILGESHNFAEDHQESRTLEGI*GSGIWE Trigger: CTCCCAAATGCCAGACCCCAAAATGCCCTCCAAAGT...TCTGGACTCTTGGTGATCCTCTGCAAAGTTGTGACTTTCCCCTAAAATGACAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029531.4 |
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| CDS CCA 72 bp | CCACTGCTGCCACCACTGCTACAGCATCCAGAGCTGTaGCGATGGCGACGGAGGGATCTGCGAGGTCTGTGG | + |
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Preference number: 6 (lower is better) Translates to: PLLPPLLQHPEL*RWRRRDLRGLW Trigger: CCACAGACCTCGCAGATCCCTCCGTCGCCATCGCCACAGCTCTGGATGCTGTAGCAGTGGTGGCAGCAGTGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029531.4 |
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