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Pregenerated sensors for LCE1A2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000068890

Ensembl transcript IDs: ENSMUST00000029530.6

Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TACAGGTCCTTCAAAAGGGGACATCTCACAAGACTACAGCATCTTTaGGCCCAGGACACAGAGAGCAGCAGGAGAGAAGAGCAGGCCAGG +
Preference number: 1 (lower is better)
Translates to: YRSFKRGHLTRLQHL*AQDTESSRREEQAR
Trigger: CCTGGCCTGCTCTTCTCTCCTGCTGCTCTCTGTGTCCTGGGCTCAAAGATGCTGTAGTCTTGTGAGATGTCCCCTTTTGAAGGACCTGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029530.6
3UTR TCA 90 bp ACACAGAGAGCAGCAGGAGAGAAGAGCAGGCCAGGGAGGGTCCACTaGACATGGCTTCCTCCTGAATGGAAGTCTAAAGTGTTAGTTGCT +
Preference number: 1 (lower is better)
Translates to: TQRAAGEKSRPGRVH*TWLPPEWKSKVLVA
Trigger: AGCAACTAACACTTTAGACTTCCATTCAGGAGGAAGCCATGTTCAGTGGACCCTCCCTGGCCTGCTCTTCTCTCCTGCTGCTCTCTGTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029530.6
3UTR-3UTR TCA 90 bp ACAGGTCCTTCAAAAGGGGACATCTCACAAGACTACAGCATCTTTGAGCCCAGGCCAGGGAGGGTCCACTaGACATGGCTTCCTCCTGAA +
Preference number: 2 (lower is better)
Translates to: TGPSKGDISQDYSIFEPRPGRVH*TWLPPE
Trigger: TTCAGGAGGAAGCCATGTTCAGTGGACCCTCCCTGG...CCTGGGCTCAAAGATGCTGTAGTCTTGTGAGATGTCCCCTTTTGAAGGACCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029530.6
3UTR CAA 90 bp ATACAGGTCCTTCAAAAGGGGACATCTCACAAGACTACAGCATCTTaGAGCCCAGGACACAGAGAGCAGCAGGAGAGAAGAGCAGGCCAG +
Preference number: 2 (lower is better)
Translates to: IQVLQKGTSHKTTAS*SPGHREQQERRAGQ
Trigger: CTGGCCTGCTCTTCTCTCCTGCTGCTCTCTGTGTCCTGGGCTCAAAGATGCTGTAGTCTTGTGAGATGTCCCCTTTTGAAGGACCTGTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029530.6
3UTR-3UTR CCA 90 bp GTGAGAGAAGCACTTTATTACTTTGTCCCTGAGAATACAGGTCCTTCAAAAGGGTGGCTTCCTCCTGAATaGAAGTCTAAAGTGTTAGTT +
Preference number: 2 (lower is better)
Translates to: VREALYYFVPENTGPSKGWLPPE*KSKVLV
Trigger: AACTAACACTTTAGACTTCCATTCAGGAGGAAGCCA...CCCTTTTGAAGGACCTGTATTCTCAGGGACAAAGTAATAAAGTGCTTCTCTCAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029530.6
3UTR TCA 72 bp GCAGCAGGAGAGAAGAGCAGGCCAGGGAGGGTCCACTaGACATGGCTTCCTCCTGAATGGAAGTCTAAAGTG +
Preference number: 3 (lower is better)
Translates to: AAGEKSRPGRVH*TWLPPEWKSKV
Trigger: CACTTTAGACTTCCATTCAGGAGGAAGCCATGTTCAGTGGACCCTCCCTGGCCTGCTCTTCTCTCCTGCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029530.6
3UTR TCA 72 bp TTCAAAAGGGGACATCTCACAAGACTACAGCATCTTTaGGCCCAGGACACAGAGAGCAGCAGGAGAGAAGAG +
Preference number: 3 (lower is better)
Translates to: FKRGHLTRLQHL*AQDTESSRREE
Trigger: CTCTTCTCTCCTGCTGCTCTCTGTGTCCTGGGCTCAAAGATGCTGTAGTCTTGTGAGATGTCCCCTTTTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029530.6
CDS-3UTR GCA 90 bp ACAGGTCCTTCAAAAGGGGACATCTCACAAGACTACAGCATCTTTGAGCCCAGGTGCCACAGCATCCACTaGTGCCACCACTGCTTCCAC +
Preference number: 4 (lower is better)
Translates to: TGPSKGDISQDYSIFEPRCHSIH*CHHCFH
Trigger: GTGGAAGCAGTGGTGGCAGCAGTGGATGCTGTGGCA...CCTGGGCTCAAAGATGCTGTAGTCTTGTGAGATGTCCCCTTTTGAAGGACCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029530.6
CDS-3UTR GCA 90 bp GCACTTTATTACTTTGTCCCTGAGAATACAGGTCCTTCAAAAGGGGACATCTCAAGCAGCCACCAGAGCTaGAGCAGCCTCCAGAGCTGC +
Preference number: 4 (lower is better)
Translates to: ALYYFVPENTGPSKGDISSSHQS*SSLQSC
Trigger: GCAGCTCTGGAGGCTGCTGCAGCTCTGGTGGCTGCT...TGAGATGTCCCCTTTTGAAGGACCTGTATTCTCAGGGACAAAGTAATAAAGTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029530.6
CDS-3UTR GCA 90 bp AGAATACAGGTCCTTCAAAAGGGGACATCTCACAAGACTACAGCATCTTTGAGCCACTGCCACCACTGCTaGCACAGCATCCACTGCTGC +
Preference number: 4 (lower is better)
Translates to: RIQVLQKGTSHKTTASLSHCHHC*HSIHCC
Trigger: GCAGCAGTGGATGCTGTGGCAGCAGTGGTGGCAGTG...GCTCAAAGATGCTGTAGTCTTGTGAGATGTCCCCTTTTGAAGGACCTGTATTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029530.6
CDS-3UTR GCA 90 bp CCTGAGAATACAGGTCCTTCAAAAGGGGACATCTCACAAGACTACAGCATCTTTCACCACTGCCACCACTaGTGCCACAGCATCCACTGC +
Preference number: 4 (lower is better)
Translates to: PENTGPSKGDISQDYSIFHHCHH*CHSIHC
Trigger: GCAGTGGATGCTGTGGCAGCAGTGGTGGCAGTGGTG...AAAGATGCTGTAGTCTTGTGAGATGTCCCCTTTTGAAGGACCTGTATTCTCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029530.6
3UTR CAA 72 bp CTTCAAAAGGGGACATCTCACAAGACTACAGCATCTTaGAGCCCAGGACACAGAGAGCAGCAGGAGAGAAGA +
Preference number: 4 (lower is better)
Translates to: LQKGTSHKTTAS*SPGHREQQERR
Trigger: TCTTCTCTCCTGCTGCTCTCTGTGTCCTGGGCTCAAAGATGCTGTAGTCTTGTGAGATGTCCCCTTTTGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029530.6
CDS-3UTR GCA 90 bp AAGCACTTTATTACTTTGTCCCTGAGAATACAGGTCCTTCAAAAGGGGACATCTTGCTGCCACCACTGCTaGCACAGCATCCACTGCTGC +
Preference number: 4 (lower is better)
Translates to: KHFITLSLRIQVLQKGTSCCHHC*HSIHCC
Trigger: GCAGCAGTGGATGCTGTGGCAGCAGTGGTGGCAGCA...AGATGTCCCCTTTTGAAGGACCTGTATTCTCAGGGACAAAGTAATAAAGTGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029530.6
CDS-3UTR GCA 90 bp GTGAGAGAAGCACTTTATTACTTTGTCCCTGAGAATACAGGTCCTTCAAAAGGGTGCCACAGCATCCACTaGTGCCACCACTGCTACAAC +
Preference number: 4 (lower is better)
Translates to: VREALYYFVPENTGPSKGCHSIH*CHHCYN
Trigger: GTTGTAGCAGTGGTGGCAGCAGTGGATGCTGTGGCA...CCCTTTTGAAGGACCTGTATTCTCAGGGACAAAGTAATAAAGTGCTTCTCTCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029530.6
CDS GCA 90 bp TGCCACAGCAGCCACTGCTGCCACCACTGCTGCCACAGCATCCACTaGTGCCACCACTGCTTCCACAGCAGCCACCACTGCCACCACTGC +
Preference number: 5 (lower is better)
Translates to: CHSSHCCHHCCHSIH*CHHCFHSSHHCHHC
Trigger: GCAGTGGTGGCAGTGGTGGCTGCTGTGGAAGCAGTGGTGGCAGCAGTGGATGCTGTGGCAGCAGTGGTGGCAGCAGTGGCTGCTGTGGCA
64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029530.6
CDS CCA 72 bp CCACTGCTGCCACCACTGCTACAACATCCAGAGCTATaGCGATGGCGACGGAGGGATCTGCGAGGTCTGTGG +
Preference number: 6 (lower is better)
Translates to: PLLPPLLQHPEL*RWRRRDLRGLW
Trigger: CCACAGACCTCGCAGATCCCTCCGTCGCCATCGCCATAGCTCTGGATGTTGTAGCAGTGGTGGCAGCAGTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029530.6