Pregenerated sensors for LBX2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000034968Ensembl transcript IDs: ENSMUST00000041265.4
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTAAGAAAAGTAGGAGTGTGGAGTAAGAGACAGAACAGAGCTAAATaGGTGTTTACCCTCCACCCGGGAACCCAGACAAGGCCTCTAGCA | + |
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Preference number: 1 (lower is better) Translates to: VRKVGVWSKRQNRAK*VFTLHPGTQTRPLA Trigger: TGCTAGAGGCCTTGTCTGGGTTCCCGGGTGGAGGGTAAACACCCATTTAGCTCTGTTCTGTCTCTTACTCCACACTCCTACTTTTCTTAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041265.4 |
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| 3UTR CCA 72 bp | GTAGGAGTGTGGAGTAAGAGACAGAACAGAGCTAAATaGGTGTTTACCCTCCACCCGGGAACCCAGACAAGG | + |
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Preference number: 3 (lower is better) Translates to: VGVWSKRQNRAK*VFTLHPGTQTR Trigger: CCTTGTCTGGGTTCCCGGGTGGAGGGTAAACACCCATTTAGCTCTGTTCTGTCTCTTACTCCACACTCCTAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041265.4 |
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| CDS-3UTR GCA 90 bp | AACCCAGACAAGGCCTCTAGCAGGGGGTCCAGGGCCCTAAAATCCAGGGCTGGGCCTCCGGGGCGGCTCTaGCTTCAGAAGGCTGTGGTG | + |
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Preference number: 4 (lower is better) Translates to: NPDKASSRGSRALKSRAGPPGRL*LQKAVV Trigger: CACCACAGCCTTCTGAAGGCAGAGCCGCCCCGGAGG...CCCAGCCCTGGATTTTAGGGCCCTGGACCCCCTGCTAGAGGCCTTGTCTGGGTT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000041265.4 |
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| CDS-3UTR TCA 90 bp | GGGAACCCAGACAAGGCCTCTAGCAGGGGGTCCAGGGCCCTAAAATCCAGGGCTGCCAGGGTCAGGGCTTaGAGTGCTGTCTGGCAGTGC | + |
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Preference number: 4 (lower is better) Translates to: GNPDKASSRGSRALKSRAARVRA*SAVWQC Trigger: GCACTGCCAGACAGCACTTCAAGCCCTGACCCTGGC...AGCCCTGGATTTTAGGGCCCTGGACCCCCTGCTAGAGGCCTTGTCTGGGTTCCC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041265.4 |
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| CDS-3UTR GCA 90 bp | AACCCAGACAAGGCCTCTAGCAGGGGGTCCAGGGCCCTAAAATCCAGGGCTGGGCTGCGGTGCAGAAGGTaGTTCGGGGACCATGCTCGG | + |
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Preference number: 4 (lower is better) Translates to: NPDKASSRGSRALKSRAGLRCRR*FGDHAR Trigger: CCGAGCATGGTCCCCGAAGCACCTTCTGCACCGCAG...CCCAGCCCTGGATTTTAGGGCCCTGGACCCCCTGCTAGAGGCCTTGTCTGGGTT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000041265.4 |
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| CDS-3UTR GCA 90 bp | GTTTACCCTCCACCCGGGAACCCAGACAAGGCCTCTAGCAGGGGGTCCAGGGCCTCCAGCTCCAGCACCTaGTGTGCAGTGAACGCTGTC | + |
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Preference number: 4 (lower is better) Translates to: VYPPPGNPDKASSRGSRASSSST*CAVNAV Trigger: GACAGCGTTCACTGCACAGCAGGTGCTGGAGCTGGA...GGCCCTGGACCCCCTGCTAGAGGCCTTGTCTGGGTTCCCGGGTGGAGGGTAAAC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041265.4 |
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| CDS-3UTR CCA 90 bp | GTTTACCCTCCACCCGGGAACCCAGACAAGGCCTCTAGCAGGGGGTCCAGGGCCTTGGCGCGACGGTTCTaGAACCAAGTGACCACTTGC | + |
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Preference number: 4 (lower is better) Translates to: VYPPPGNPDKASSRGSRALARRF*NQVTTC Trigger: GCAAGTGGTCACTTGGTTCCAGAACCGTCGCGCCAA...GGCCCTGGACCCCCTGCTAGAGGCCTTGTCTGGGTTCCCGGGTGGAGGGTAAAC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041265.4 |
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| CDS-3UTR GCA 90 bp | GGGAACCCAGACAAGGCCTCTAGCAGGGGGTCCAGGGCCCTAAAATCCAGGGCTCTCCAGCACCTGCTGTaGAGTGAACGCTGTCCGAGA | + |
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Preference number: 4 (lower is better) Translates to: GNPDKASSRGSRALKSRALQHLL*SERCPR Trigger: TCTCGGACAGCGTTCACTGCACAGCAGGTGCTGGAG...AGCCCTGGATTTTAGGGCCCTGGACCCCCTGCTAGAGGCCTTGTCTGGGTTCCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041265.4 |
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| CDS-3UTR TCA 90 bp | GGAGTAAGAGACAGAACAGAGCTAAATGGGTGTTTACCCTCCACCCGGGAACCCCCTCCACATCCCGCTTaGGCTTGGCGCGACGGTTCT | + |
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Preference number: 4 (lower is better) Translates to: GVRDRTELNGCLPSTREPPPHPA*AWRDGS Trigger: AGAACCGTCGCGCCAAGCTCAAGCGGGATGTGGAGG...GGGTTCCCGGGTGGAGGGTAAACACCCATTTAGCTCTGTTCTGTCTCTTACTCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041265.4 |
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| CDS-3UTR TCA 90 bp | AAGAGACAGAACAGAGCTAAATGGGTGTTTACCCTCCACCCGGGAACCCAGACACTCAGAATCGGGCCCTaGAGGGCCAGGGTCAGGGCT | + |
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Preference number: 4 (lower is better) Translates to: KRQNRAKWVFTLHPGTQTLRIGP*RARVRA Trigger: AGCCCTGACCCTGGCCCTTCAGGGCCCGATTCTGAG...TGTCTGGGTTCCCGGGTGGAGGGTAAACACCCATTTAGCTCTGTTCTGTCTCTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041265.4 |
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| CDS-3UTR GCA 90 bp | AAGAGACAGAACAGAGCTAAATGGGTGTTTACCCTCCACCCGGGAACCCAGACACCGGCCTCGGGAAGCTaGGGTGCAGAAGGTGCTTCG | + |
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Preference number: 4 (lower is better) Translates to: KRQNRAKWVFTLHPGTQTPASGS*GAEGAS Trigger: CGAAGCACCTTCTGCACCGCAGCTTCCCGAGGCCGG...TGTCTGGGTTCCCGGGTGGAGGGTAAACACCCATTTAGCTCTGTTCTGTCTCTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041265.4 |
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| CDS-3UTR GCA 90 bp | AAGAGACAGAACAGAGCTAAATGGGTGTTTACCCTCCACCCGGGAACCCAGACAACGCTGTCCGAGACTTaGGGCGTCTCCGGACACCAG | + |
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Preference number: 4 (lower is better) Translates to: KRQNRAKWVFTLHPGTQTTLSET*GVSGHQ Trigger: CTGGTGTCCGGAGACGCCGCAAGTCTCGGACAGCGT...TGTCTGGGTTCCCGGGTGGAGGGTAAACACCCATTTAGCTCTGTTCTGTCTCTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041265.4 |
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| CDS-3UTR GCA 90 bp | AAGAGACAGAACAGAGCTAAATGGGTGTTTACCCTCCACCCGGGAACCCAGACAAGTGCTGTCTGGCAGTaGTGGGTAACACAGGACTCC | + |
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Preference number: 4 (lower is better) Translates to: KRQNRAKWVFTLHPGTQTSAVWQ*WVTQDS Trigger: GGAGTCCTGTGTTACCCAGCACTGCCAGACAGCACT...TGTCTGGGTTCCCGGGTGGAGGGTAAACACCCATTTAGCTCTGTTCTGTCTCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041265.4 |
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| CDS-3UTR CCA 90 bp | AGAGACAGAACAGAGCTAAATGGGTGTTTACCCTCCACCCGGGAACCCAGACAACCTCATCTGATAAGTTaGGCTCAGAATCGGGCCCTG | + |
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Preference number: 4 (lower is better) Translates to: RDRTELNGCLPSTREPRQPHLIS*AQNRAL Trigger: CAGGGCCCGATTCTGAGCCCAACTTATCAGATGAGG...TTGTCTGGGTTCCCGGGTGGAGGGTAAACACCCATTTAGCTCTGTTCTGTCTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041265.4 |
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| CDS GCA 90 bp | AGCGCACACAGTGGTGACGCGGGATCAGGGCCGGCCTCGGGAAGCTaGGGTGCAGAAGGTGCTTCGGGGACCATGCTCGGACCTAGGATG | + |
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Preference number: 5 (lower is better) Translates to: SAHSGDAGSGPASGS*GAEGASGTMLGPRM Trigger: CATCCTAGGTCCGAGCATGGTCCCCGAAGCACCTTCTGCACCGCAGCTTCCCGAGGCCGGCCCTGATCCCGCGTCACCACTGTGTGCGCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041265.4 |
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| CDS-3UTR CAA 90 bp | CCCGGGAACCCAGACAAGGCCTCTAGCAGGGGGTCCAGGGCCCTAAAATCCAGGTCCTCCACATCCCGCTaGAGCTTGGCGCGACGGTTC | + |
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Preference number: 5 (lower is better) Translates to: PGNPDKASSRGSRALKSRSSTSR*SLARRF Trigger: GAACCGTCGCGCCAAGCTCAAGCGGGATGTGGAGGA...CCTGGATTTTAGGGCCCTGGACCCCCTGCTAGAGGCCTTGTCTGGGTTCCCGGG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041265.4 |
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| CDS TCA 90 bp | TTGCGCATTAGCCAGGCCCAGTCGCGCAGCAAGTCCGTCGCGCTCTaGCGGTGCCAAGTACTTCTGGAAGACGAATCGCCGCTCCAGCTC | + |
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Preference number: 5 (lower is better) Translates to: LRISQAQSRSKSVAL*RCQVLLEDESPLQL Trigger: GAGCTGGAGCGGCGATTCGTCTTCCAGAAGTACTTGGCACCGTCAGAGCGCGACGGACTTGCTGCGCGACTGGGCCTGGCTAATGCGCAA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041265.4 |
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| CDS-3UTR CAA 90 bp | CCACCCGGGAACCCAGACAAGGCCTCTAGCAGGGGGTCCAGGGCCCTAAAATCCGAACCAAGTGACCACTaGCGCATTAGCCAGGCCCAG | + |
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Preference number: 5 (lower is better) Translates to: PPGNPDKASSRGSRALKSEPSDH*RISQAQ Trigger: CTGGGCCTGGCTAATGCGCAAGTGGTCACTTGGTTC...GGATTTTAGGGCCCTGGACCCCCTGCTAGAGGCCTTGTCTGGGTTCCCGGGTGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041265.4 |
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| CDS-3UTR CAA 90 bp | GTTTACCCTCCACCCGGGAACCCAGACAAGGCCTCTAGCAGGGGGTCCAGGGCCCCAGGAAAGTTTTACTaGCTAGCTCCTCCAGCGCAC | + |
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Preference number: 5 (lower is better) Translates to: VYPPPGNPDKASSRGSRAPGKFY*LAPPAH Trigger: GTGCGCTGGAGGAGCTAGCAAGTAAAACTTTCCTGG...GGCCCTGGACCCCCTGCTAGAGGCCTTGTCTGGGTTCCCGGGTGGAGGGTAAAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000041265.4 |
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| CDS-3UTR CAA 90 bp | TGGAGTAAGAGACAGAACAGAGCTAAATGGGTGTTTACCCTCCACCCGGGAACCGGCCAGGGTCAGGGCTaGAAGTGCTGTCTGGCAGTG | + |
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Preference number: 5 (lower is better) Translates to: WSKRQNRAKWVFTLHPGTGQGQG*KCCLAV Trigger: CACTGCCAGACAGCACTTCAAGCCCTGACCCTGGCC...GGTTCCCGGGTGGAGGGTAAACACCCATTTAGCTCTGTTCTGTCTCTTACTCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041265.4 |
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| CDS GCA 72 bp | AGTGGTGACGCGGGATCAGGGCCGGCCTCGGGAAGCTaGGGTGCAGAAGGTGCTTCGGGGACCATGCTCGGA | + |
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Preference number: 6 (lower is better) Translates to: SGDAGSGPASGS*GAEGASGTMLG Trigger: TCCGAGCATGGTCCCCGAAGCACCTTCTGCACCGCAGCTTCCCGAGGCCGGCCCTGATCCCGCGTCACCACT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041265.4 |
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| CDS TCA 72 bp | AGCCAGGCCCAGTCGCGCAGCAAGTCCGTCGCGCTCTaGCGGTGCCAAGTACTTCTGGAAGACGAATCGCCG | + |
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Preference number: 6 (lower is better) Translates to: SQAQSRSKSVAL*RCQVLLEDESP Trigger: CGGCGATTCGTCTTCCAGAAGTACTTGGCACCGTCAGAGCGCGACGGACTTGCTGCGCGACTGGGCCTGGCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041265.4 |
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| CDS CAA 72 bp | GCTCAGAATCGGGCCCTGAAGGGCCAGGGTCAGGGCTaGAAGTGCTGTCTGGCAGTGCTGGGTAACACAGGA | + |
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Preference number: 6 (lower is better) Translates to: AQNRALKGQGQG*KCCLAVLGNTG Trigger: TCCTGTGTTACCCAGCACTGCCAGACAGCACTTCAAGCCCTGACCCTGGCCCTTCAGGGCCCGATTCTGAGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041265.4 |
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| CDS CCA 72 bp | CTGCCTTCAGAAGGCTGTGGTGTAGCCCGCGGGGAATaGCCCAGGAAAGTTTTACTTGCTAGCTCCTCCAGC | + |
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Preference number: 6 (lower is better) Translates to: LPSEGCGVARGE*PRKVLLASSSS Trigger: GCTGGAGGAGCTAGCAAGTAAAACTTTCCTGGGCCATTCCCCGCGGGCTACACCACAGCCTTCTGAAGGCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041265.4 |
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