Pregenerated sensors for LBHD2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000087075Ensembl transcript IDs: ENSMUST00000150384.3
Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCTGGGGTCCTGGCCACACCCAGCCAGACAGGAAGCTTGGCGAGCTaGGCCTCCTGTGTGGGCCCAGCCTTTTCTGTGAATCAGCCTGTC | + |
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Preference number: 1 (lower is better) Translates to: AGVLATPSQTGSLAS*ASCVGPAFSVNQPV Trigger: GACAGGCTGATTCACAGAAAAGGCTGGGCCCACACAGGAGGCCCAGCTCGCCAAGCTTCCTGTCTGGCTGGGTGTGGCCAGGACCCCAGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000150384.3 |
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| 3UTR GCA 90 bp | AGCAGCTCAAGTACCCACGAAGGTGCCCGTAGCCACCAGGAAGGATaGCTTTATTTCTGCTTCAAGCCACTGAACAAAGAGGGGTATGTT | + |
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Preference number: 1 (lower is better) Translates to: SSSSTHEGARSHQEG*LYFCFKPLNKEGYV Trigger: AACATACCCCTCTTTGTTCAGTGGCTTGAAGCAGAAATAAAGGCATCCTTCCTGGTGGCTACGGGCACCTTCGTGGGTACTTGAGCTGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150384.3 |
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| 3UTR-3UTR CCA 90 bp | CCACACCCAGCCAGACAGGAAGCTTGGCGAGCTGGGCCTCCTGTGTGGGCCCAGATCAGCCTGTCATCCTaGGATGGAGGTCCTCTTGGT | + |
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Preference number: 2 (lower is better) Translates to: PHPARQEAWRAGPPVWAQISLSS*DGGPLG Trigger: ACCAAGAGGACCTCCATCCCAGGATGACAGGCTGAT...CTGGGCCCACACAGGAGGCCCAGCTCGCCAAGCTTCCTGTCTGGCTGGGTGTGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150384.3 |
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| 3UTR-3UTR TCA 90 bp | CAGGAAGGATGCCTTTATTTCTGCTTCAAGCCACTGAACAAAGAGGGGTATGTTGCCCAGCCTTTTCTGTaGATCAGCCTGTCATCCTGG | + |
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Preference number: 2 (lower is better) Translates to: QEGCLYFCFKPLNKEGYVAQPFL*ISLSSW Trigger: CCAGGATGACAGGCTGATTCACAGAAAAGGCTGGGC...AACATACCCCTCTTTGTTCAGTGGCTTGAAGCAGAAATAAAGGCATCCTTCCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000150384.3 |
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| 3UTR CCA 72 bp | CTAGACCATGGAGCGCAAAGGCAGGGGCTGGGGTCCTaGCCACACCCAGCCAGACAGGAAGCTTGGCGAGCT | + |
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Preference number: 3 (lower is better) Translates to: LDHGAQRQGLGS*PHPARQEAWRA Trigger: AGCTCGCCAAGCTTCCTGTCTGGCTGGGTGTGGCCAGGACCCCAGCCCCTGCCTTTGCGCTCCATGGTCTAG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000150384.3 |
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| CDS-3UTR GCA 90 bp | GGGTCCTGGCCACACCCAGCCAGACAGGAAGCTTGGCGAGCTGGGCCTCCTGTGGCAGGGAATGCCTGGTaGCCGGAGCTGGCACCCTGG | + |
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Preference number: 4 (lower is better) Translates to: GSWPHPARQEAWRAGPPVAGNAW*PELAPW Trigger: CCAGGGTGCCAGCTCCGGGCACCAGGCATTCCCTGC...CACAGGAGGCCCAGCTCGCCAAGCTTCCTGTCTGGCTGGGTGTGGCCAGGACCC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150384.3 |
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| CDS-3UTR CCA 90 bp | ACACCCAGCCAGACAGGAAGCTTGGCGAGCTGGGCCTCCTGTGTGGGCCCAGCCCTCTGGGGCCCTCAGTaGGGCTCTCTGGTGCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: TPSQTGSLASWASCVGPALWGPQ*GSLVLL Trigger: CAGCAGCACCAGAGAGCCCCACTGAGGGCCCCAGAG...GGCTGGGCCCACACAGGAGGCCCAGCTCGCCAAGCTTCCTGTCTGGCTGGGTGT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150384.3 |
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| CDS-3UTR CCA 90 bp | GGTCCTGGCCACACCCAGCCAGACAGGAAGCTTGGCGAGCTGGGCCTCCTGTGTCGCAGCCTTCCCTGCTaGGCCTCTGGGGCCCTCAGT | + |
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Preference number: 4 (lower is better) Translates to: GPGHTQPDRKLGELGLLCRSLPC*ASGALS Trigger: ACTGAGGGCCCCAGAGGCCCAGCAGGGAAGGCTGCG...ACACAGGAGGCCCAGCTCGCCAAGCTTCCTGTCTGGCTGGGTGTGGCCAGGACC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150384.3 |
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| CDS-3UTR GCA 90 bp | GTCCTGGCCACACCCAGCCAGACAGGAAGCTTGGCGAGCTGGGCCTCCTGTGTGTACTGGAGCAGGGAATaGCTGGTGCCCGGAGCTGGC | + |
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Preference number: 4 (lower is better) Translates to: VLATPSQTGSLASWASCVYWSRE*LVPGAG Trigger: GCCAGCTCCGGGCACCAGGCATTCCCTGCTCCAGTA...CACACAGGAGGCCCAGCTCGCCAAGCTTCCTGTCTGGCTGGGTGTGGCCAGGAC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150384.3 |
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| CDS-3UTR TCA 90 bp | GGTCCTGGCCACACCCAGCCAGACAGGAAGCTTGGCGAGCTGGGCCTCCTGTGTATAGAGGGCAGTCGCTaGCAGAGCCAAGGGCCCTTC | + |
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Preference number: 4 (lower is better) Translates to: GPGHTQPDRKLGELGLLCIEGSR*QSQGPF Trigger: GAAGGGCCCTTGGCTCTGTCAGCGACTGCCCTCTAT...ACACAGGAGGCCCAGCTCGCCAAGCTTCCTGTCTGGCTGGGTGTGGCCAGGACC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150384.3 |
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| CDS-3UTR GCA 90 bp | GTATGTTCCAGATCTAGACCATGGAGCGCAAAGGCAGGGGCTGGGGTCCTGGCCTACCGCAGCCTTCCCTaGTGGGCCTCTGGGGCCCTC | + |
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Preference number: 4 (lower is better) Translates to: VCSRSRPWSAKAGAGVLAYRSLP*WASGAL Trigger: GAGGGCCCCAGAGGCCCAGCAGGGAAGGCTGCGGTA...GGCCAGGACCCCAGCCCCTGCCTTTGCGCTCCATGGTCTAGATCTGGAACATAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000150384.3 |
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| CDS-3UTR TCA 90 bp | GCTGGGGTCCTGGCCACACCCAGCCAGACAGGAAGCTTGGCGAGCTGGGCCTCCAGCTGGCACCCTGGATaGCATCATCATCTGCTTCCT | + |
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Preference number: 4 (lower is better) Translates to: AGVLATPSQTGSLASWASSWHPG*HHHLLP Trigger: AGGAAGCAGATGATGATGTCATCCAGGGTGCCAGCT...GGAGGCCCAGCTCGCCAAGCTTCCTGTCTGGCTGGGTGTGGCCAGGACCCCAGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150384.3 |
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| CDS-3UTR CCA 90 bp | ACACCCAGCCAGACAGGAAGCTTGGCGAGCTGGGCCTCCTGTGTGGGCCCAGCCCCGGAGCTGGCACCCTaGATGACATCATCATCTGCT | + |
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Preference number: 4 (lower is better) Translates to: TPSQTGSLASWASCVGPAPELAP*MTSSSA Trigger: AGCAGATGATGATGTCATCCAGGGTGCCAGCTCCGG...GGCTGGGCCCACACAGGAGGCCCAGCTCGCCAAGCTTCCTGTCTGGCTGGGTGT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150384.3 |
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| CDS-3UTR CCA 90 bp | GGCCCAGCCTTTTCTGTGAATCAGCCTGTCATCCTGGGATGGAGGTCCTCTTGGCTCAGTGGGGCTCTCTaGTGCTGCTGGCTGTGGGGT | + |
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Preference number: 4 (lower is better) Translates to: GPAFSVNQPVILGWRSSWLSGAL*CCWLWG Trigger: ACCCCACAGCCAGCAGCACCAGAGAGCCCCACTGAG...CCAAGAGGACCTCCATCCCAGGATGACAGGCTGATTCACAGAAAAGGCTGGGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000150384.3 |
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| CDS-3UTR CCA 90 bp | TGTGGGCCCAGCCTTTTCTGTGAATCAGCCTGTCATCCTGGGATGGAGGTCCTCACCCGCATCTGTTACTaGAGCAGGGAATGCCTGGTG | + |
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Preference number: 4 (lower is better) Translates to: CGPSLFCESACHPGMEVLTRICY*SRECLV Trigger: CACCAGGCATTCCCTGCTCCAGTAACAGATGCGGGT...GAGGACCTCCATCCCAGGATGACAGGCTGATTCACAGAAAAGGCTGGGCCCACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150384.3 |
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| CDS-3UTR CCA 90 bp | ACGAAGGTGCCCGTAGCCACCAGGAAGGATGCCTTTATTTCTGCTTCAAGCCACTGCTTCCTTCCCTGGTaGACTTGGGGAAGGAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: TKVPVATRKDAFISASSHCFLPW*TWGRSS Trigger: GCTGCTCCTTCCCCAAGTCCACCAGGGAAGGAAGCA...GTGGCTTGAAGCAGAAATAAAGGCATCCTTCCTGGTGGCTACGGGCACCTTCGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150384.3 |
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| CDS-3UTR CCA 90 bp | CCCAGCCTTTTCTGTGAATCAGCCTGTCATCCTGGGATGGAGGTCCTCTTGGTGATCTGCTTCCTTCCCTaGTGGACTTGGGGAAGGAGC | + |
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Preference number: 4 (lower is better) Translates to: PSLFCESACHPGMEVLLVICFLP*WTWGRS Trigger: GCTCCTTCCCCAAGTCCACCAGGGAAGGAAGCAGAT...CACCAAGAGGACCTCCATCCCAGGATGACAGGCTGATTCACAGAAAAGGCTGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000150384.3 |
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| CDS GCA 90 bp | ACAGAGCCAAGGGCCCTTCTCCCGGACACCTACCGCAGCCTTCCCTaGTGGGCCTCTGGGGCCCTCAGTGGGGCTCTCTGGTGCTGCTGG | + |
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Preference number: 5 (lower is better) Translates to: TEPRALLPDTYRSLP*WASGALSGALWCCW Trigger: CCAGCAGCACCAGAGAGCCCCACTGAGGGCCCCAGAGGCCCAGCAGGGAAGGCTGCGGTAGGTGTCCGGGAGAAGGGCCCTTGGCTCTGT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000150384.3 |
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| CDS TCA 90 bp | TCCTTCCCTGGTGGACTTGGGGAAGGAGCAGCAGCAGCCTGGATCTaGGGGGTACCTCTCTGTGTACCCTCAGGTGGCCAACGCAGCTCC | + |
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Preference number: 5 (lower is better) Translates to: SFPGGLGEGAAAAWI*GVPLCVPSGGQRSS Trigger: GGAGCTGCGTTGGCCACCTGAGGGTACACAGAGAGGTACCCCTCAGATCCAGGCTGCTGCTGCTCCTTCCCCAAGTCCACCAGGGAAGGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000150384.3 |
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| CDS CCA 90 bp | CCCGGAGCTGGCACCCTGGATGACATCATCATCTGCTTCCTTCCCTaGTGGACTTGGGGAAGGAGCAGCAGCAGCCTGGATCTGAGGGGT | + |
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Preference number: 5 (lower is better) Translates to: PGAGTLDDIIICFLP*WTWGRSSSSLDLRG Trigger: ACCCCTCAGATCCAGGCTGCTGCTGCTCCTTCCCCAAGTCCACCAGGGAAGGAAGCAGATGATGATGTCATCCAGGGTGCCAGCTCCGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000150384.3 |
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| CDS CCA 90 bp | GGAGCTGGCACCCTGGATGACATCATCATCTGCTTCCTTCCCTGGTaGACTTGGGGAAGGAGCAGCAGCAGCCTGGATCTGAGGGGTACC | + |
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Preference number: 5 (lower is better) Translates to: GAGTLDDIIICFLPW*TWGRSSSSLDLRGT Trigger: GGTACCCCTCAGATCCAGGCTGCTGCTGCTCCTTCCCCAAGTCCACCAGGGAAGGAAGCAGATGATGATGTCATCCAGGGTGCCAGCTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000150384.3 |
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| CDS CCA 90 bp | GTAGAGCCTGCCACACCCGCATCTGTTACTGGAGCAGGGAATGCCTaGTGCCCGGAGCTGGCACCCTGGATGACATCATCATCTGCTTCC | + |
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Preference number: 5 (lower is better) Translates to: VEPATPASVTGAGNA*CPELAPWMTSSSAS Trigger: GGAAGCAGATGATGATGTCATCCAGGGTGCCAGCTCCGGGCACCAGGCATTCCCTGCTCCAGTAACAGATGCGGGTGTGGCAGGCTCTAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150384.3 |
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| CDS TCA 90 bp | TTACTGGAGCAGGGAATGCCTGGTGCCCGGAGCTGGCACCCTGGATaGCATCATCATCTGCTTCCTTCCCTGGTGGACTTGGGGAAGGAG | + |
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Preference number: 5 (lower is better) Translates to: LLEQGMPGARSWHPG*HHHLLPSLVDLGKE Trigger: CTCCTTCCCCAAGTCCACCAGGGAAGGAAGCAGATGATGATGTCATCCAGGGTGCCAGCTCCGGGCACCAGGCATTCCCTGCTCCAGTAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150384.3 |
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| CDS CCA 90 bp | GGCACCCTGGATGACATCATCATCTGCTTCCTTCCCTGGTGGACTTaGGGAAGGAGCAGCAGCAGCCTGGATCTGAGGGGTACCTCTCTG | + |
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Preference number: 5 (lower is better) Translates to: GTLDDIIICFLPWWT*GRSSSSLDLRGTSL Trigger: CAGAGAGGTACCCCTCAGATCCAGGCTGCTGCTGCTCCTTCCCCAAGTCCACCAGGGAAGGAAGCAGATGATGATGTCATCCAGGGTGCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150384.3 |
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| CDS CCA 90 bp | TCTGTTACTGGAGCAGGGAATGCCTGGTGCCCGGAGCTGGCACCCTaGATGACATCATCATCTGCTTCCTTCCCTGGTGGACTTGGGGAA | + |
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Preference number: 5 (lower is better) Translates to: SVTGAGNAWCPELAP*MTSSSASFPGGLGE Trigger: TTCCCCAAGTCCACCAGGGAAGGAAGCAGATGATGATGTCATCCAGGGTGCCAGCTCCGGGCACCAGGCATTCCCTGCTCCAGTAACAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150384.3 |
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| CDS TCA 72 bp | GGTGGACTTGGGGAAGGAGCAGCAGCAGCCTGGATCTaGGGGGTACCTCTCTGTGTACCCTCAGGTGGCCAA | + |
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Preference number: 6 (lower is better) Translates to: GGLGEGAAAAWI*GVPLCVPSGGQ Trigger: TTGGCCACCTGAGGGTACACAGAGAGGTACCCCTCAGATCCAGGCTGCTGCTGCTCCTTCCCCAAGTCCACC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000150384.3 |
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| CDS GCA 72 bp | GTGCCCGGAGCTGGCACCCTGGATGACATCATCATCTaGTTCCTTCCCTGGTGGACTTGGGGAAGGAGCAGC | + |
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Preference number: 6 (lower is better) Translates to: VPGAGTLDDIII*FLPWWTWGRSS Trigger: GCTGCTCCTTCCCCAAGTCCACCAGGGAAGGAAGCAGATGATGATGTCATCCAGGGTGCCAGCTCCGGGCAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150384.3 |
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| CDS CCA 72 bp | GGAGCAGGGAATGCCTGGTGCCCGGAGCTGGCACCCTaGATGACATCATCATCTGCTTCCTTCCCTGGTGGA | + |
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Preference number: 6 (lower is better) Translates to: GAGNAWCPELAP*MTSSSASFPGG Trigger: TCCACCAGGGAAGGAAGCAGATGATGATGTCATCCAGGGTGCCAGCTCCGGGCACCAGGCATTCCCTGCTCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150384.3 |
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| CDS CCA 72 bp | GCCACACCCGCATCTGTTACTGGAGCAGGGAATGCCTaGTGCCCGGAGCTGGCACCCTGGATGACATCATCA | + |
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Preference number: 6 (lower is better) Translates to: ATPASVTGAGNA*CPELAPWMTSS Trigger: TGATGATGTCATCCAGGGTGCCAGCTCCGGGCACCAGGCATTCCCTGCTCCAGTAACAGATGCGGGTGTGGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150384.3 |
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| CDS TCA 72 bp | CAGGGAATGCCTGGTGCCCGGAGCTGGCACCCTGGATaGCATCATCATCTGCTTCCTTCCCTGGTGGACTTG | + |
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Preference number: 6 (lower is better) Translates to: QGMPGARSWHPG*HHHLLPSLVDL Trigger: CAAGTCCACCAGGGAAGGAAGCAGATGATGATGTCATCCAGGGTGCCAGCTCCGGGCACCAGGCATTCCCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150384.3 |
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| CDS CCA 72 bp | GGCACCCTGGATGACATCATCATCTGCTTCCTTCCCTaGTGGACTTGGGGAAGGAGCAGCAGCAGCCTGGAT | + |
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Preference number: 6 (lower is better) Translates to: GTLDDIIICFLP*WTWGRSSSSLD Trigger: ATCCAGGCTGCTGCTGCTCCTTCCCCAAGTCCACCAGGGAAGGAAGCAGATGATGATGTCATCCAGGGTGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150384.3 |
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| CDS CCA 72 bp | ACCCTGGATGACATCATCATCTGCTTCCTTCCCTGGTaGACTTGGGGAAGGAGCAGCAGCAGCCTGGATCTG | + |
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Preference number: 6 (lower is better) Translates to: TLDDIIICFLPW*TWGRSSSSLDL Trigger: CAGATCCAGGCTGCTGCTGCTCCTTCCCCAAGTCCACCAGGGAAGGAAGCAGATGATGATGTCATCCAGGGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150384.3 |
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