RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LBHD1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000096740

Ensembl transcript IDs: ENSMUST00000187504.7

Found 76 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AAAAAGATAGGGTCTTATAAAGCCCTGGAACTCAATGTGAGGCCTTaGACAGAGATCTGCCTGCCTCTCTGCCTGGCAAATGTTGGGATT +
Preference number: 1 (lower is better)
Translates to: KKIGSYKALELNVRP*TEICLPLCLANVGI
Trigger: AATCCCAACATTTGCCAGGCAGAGAGGCAGGCAGATCTCTGTTCAAGGCCTCACATTGAGTTCCAGGGCTTTATAAGACCCTATCTTTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
3UTR TCA 90 bp AAAAGTTTAAGGCCAGTGGTATTGTACACATTCAATCACAGCATTTaGGACAGGGGTAGGTGGATCTCTATAAGTTTGAGGCCAGCCAGT +
Preference number: 1 (lower is better)
Translates to: KSLRPVVLYTFNHSI*DRGRWISISLRPAS
Trigger: ACTGGCTGGCCTCAAACTTATAGAGATCCACCTACCCCTGTCTCAAATGCTGTGATTGAATGTGTACAATACCACTGGCCTTAAACTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
3UTR-3UTR CCA 90 bp GCAGGCAGATTTCTGAAGTTCGAGGCCAGCCTGGTCTACAGAGAGTTCCAGGACGCCTGCCTCTCTGCCTaGCAAATGTTGGGATTAAAG +
Preference number: 2 (lower is better)
Translates to: AGRFLKFEASLVYREFQDACLSA*QMLGLK
Trigger: CTTTAATCCCAACATTTGCCAGGCAGAGAGGCAGGC...GTCCTGGAACTCTCTGTAGACCAGGCTGGCCTCGAACTTCAGAAATCTGCCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
3UTR-3UTR TCA 90 bp TGCTGTGTGTATGGGGACATGTGCTTGCCACAATTCAAGTGTGGAAGCCAGAGGCATCTCACTGAGTGCTaGCTGGGAAATACAGGCCCT +
Preference number: 2 (lower is better)
Translates to: CCVYGDMCLPQFKCGSQRHLTEC*LGNTGP
Trigger: AGGGCCTGTATTTCCCAGTCAGCACTCAGTGAGATG...CCTCTGGCTTCCACACTTGAATTGTGGCAAGCACATGTCCCCATACACACAGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
3UTR-3UTR CCA 90 bp GCAGGCAGATTTCTGAAGTTCGAGGCCAGCCTGGTCTACAGAGAGTTCCAGGACAAAGGCCTTTCTACATaGCTCATCCCTGCTGCACTT +
Preference number: 2 (lower is better)
Translates to: AGRFLKFEASLVYREFQDKGLST*LIPAAL
Trigger: AAGTGCAGCAGGGATGAGCCATGTAGAAAGGCCTTT...GTCCTGGAACTCTCTGTAGACCAGGCTGGCCTCGAACTTCAGAAATCTGCCTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
3UTR-3UTR CCA 90 bp TTGGTGCTCTTTCAAAATGCTCAGGCTCAGTTCCCAGCACCTACGTGGCAGTTTACAGCTGGGCAGTGGTaGCGCACACCTTTAATCCCA +
Preference number: 2 (lower is better)
Translates to: LVLFQNAQAQFPAPTWQFTAGQW*RTPLIP
Trigger: TGGGATTAAAGGTGTGCGCCACCACTGCCCAGCTGT...AAACTGCCACGTAGGTGCTGGGAACTGAGCCTGAGCATTTTGAAAGAGCACCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
3UTR-3UTR GCA 90 bp TTGGTGCTCTTTCAAAATGCTCAGGCTCAGTTCCCAGCACCTACGTGGCAGTTTGAACAGAGATCTGCCTaGCTCTCTGCCTGGCAAATG +
Preference number: 2 (lower is better)
Translates to: LVLFQNAQAQFPAPTWQFEQRSA*LSAWQM
Trigger: CATTTGCCAGGCAGAGAGGCAGGCAGATCTCTGTTC...AAACTGCCACGTAGGTGCTGGGAACTGAGCCTGAGCATTTTGAAAGAGCACCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
3UTR-3UTR GCA 90 bp AGCCTCTTCTGGCCTCTGAAGACTCCAGGCATGCACTACATACATAGTGTACACAGGCATGCGCCACCATaGCTTCACTTTGTAGCTTCT +
Preference number: 2 (lower is better)
Translates to: SLFWPLKTPGMHYIHSVHRHAPP*LHFVAS
Trigger: AGAAGCTACAAAGTGAAGGCATGGTGGCGCATGCCT...GTGTACACTATGTATGTAGTGCATGCCTGGAGTCTTCAGAGGCCAGAAGAGGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
3UTR-3UTR GCA 90 bp AGCCTCTTCTGGCCTCTGAAGACTCCAGGCATGCACTACATACATAGTGTACACATCTGCCTGCCTCTCTaGCTGGCAAATGTTGGGATT +
Preference number: 2 (lower is better)
Translates to: SLFWPLKTPGMHYIHSVHICLPL*LANVGI
Trigger: AATCCCAACATTTGCCAGGCAGAGAGGCAGGCAGAT...GTGTACACTATGTATGTAGTGCATGCCTGGAGTCTTCAGAGGCCAGAAGAGGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
3UTR-3UTR TCA 90 bp GTAGAGTCAGCTCTTTCCACTATTTGGGTAACAGGGATAGAACTCAGATTGTTGAGGCAGGCAGATTTCTaGAGTTCGAGGCCAGCCTGG +
Preference number: 2 (lower is better)
Translates to: VESALSTIWVTGIELRLLRQADF*SSRPAW
Trigger: CCAGGCTGGCCTCGAACTTCAGAAATCTGCCTGCCT...CAACAATCTGAGTTCTATCCCTGTTACCCAAATAGTGGAAAGAGCTGACTCTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
3UTR CAA 90 bp GAGTCAGCTCTTTCCACTATTTGGGTAACAGGGATAGAACTCAGATaGTTGGGCTTGGGCCAAGTACCCTTACCCCTGAGTTACATCACT +
Preference number: 2 (lower is better)
Translates to: ESALSTIWVTGIELR*LGLGQVPLPLSYIT
Trigger: AGTGATGTAACTCAGGGGTAAGGGTACTTGGCCCAAGCCCAACAATCTGAGTTCTATCCCTGTTACCCAAATAGTGGAAAGAGCTGACTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
3UTR CCA 72 bp GTGCTGACTGGGAAATACAGGCCCTCAAGATGTAGATaGCACAGGGGTTGCCTCGAATGCAGGTACCCTGGG +
Preference number: 3 (lower is better)
Translates to: VLTGKYRPSRCR*HRGCLECRYPG
Trigger: CCCAGGGTACCTGCATTCGAGGCAACCCCTGTGCCATCTACATCTTGAGGGCCTGTATTTCCCAGTCAGCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
3UTR-3UTR CAA 90 bp AGAGGGTGTCCCAGGGCAGCCAGGCTACAAAGATCTCCCGTCTCAAAAATAAAGTCTGCCTGGCAAATGTaGGGATTAAAGGCATGCGCC +
Preference number: 3 (lower is better)
Translates to: RGCPRAARLQRSPVSKIKSAWQM*GLKACA
Trigger: GGCGCATGCCTTTAATCCCAACATTTGCCAGGCAGA...CTTTATTTTTGAGACGGGAGATCTTTGTAGCCTGGCTGCCCTGGGACACCCTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
3UTR GCA 72 bp GTTCAGGGGTTAGGAATACTTGGTGCTCTTTCAAAATaGTCAGGCTCAGTTCCCAGCACCTACGTGGCAGTT +
Preference number: 3 (lower is better)
Translates to: VQGLGILGALSK*SGSVPSTYVAV
Trigger: AACTGCCACGTAGGTGCTGGGAACTGAGCCTGAGCATTTTGAAAGAGCACCAAGTATTCCTAACCCCTGAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
3UTR-3UTR CAA 90 bp AGAGGGTGTCCCAGGGCAGCCAGGCTACAAAGATCTCCCGTCTCAAAAATAAAGAGCTTTTATCTTCTTTaGTTGCTTGGGCTGTGGCTG +
Preference number: 3 (lower is better)
Translates to: RGCPRAARLQRSPVSKIKSFYLL*LLGLWL
Trigger: CAGCCACAGCCCAAGCAACAAAAGAAGATAAAAGCT...CTTTATTTTTGAGACGGGAGATCTTTGTAGCCTGGCTGCCCTGGGACACCCTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
3UTR GCA 72 bp GTTTTGACACTTGCTGTGTGTATGGGGACATGTGCTTaGCACAATTCAAGTGTGGAAGCCAGAGGACAAGAG +
Preference number: 3 (lower is better)
Translates to: VLTLAVCMGTCA*HNSSVEARGQE
Trigger: CTCTTGTCCTCTGGCTTCCACACTTGAATTGTGGCAAGCACATGTCCCCATACACACAGCAAGTGTCAAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
3UTR CCA 72 bp TGTGTATGGGGACATGTGCTTGCCACAATTCAAGTGTaGAAGCCAGAGGACAAGAGTAGAGTCAGCTCTTTC +
Preference number: 3 (lower is better)
Translates to: CVWGHVLATIQV*KPEDKSRVSSF
Trigger: GAAAGAGCTGACTCTACTCTTGTCCTCTGGCTTCCACACTTGAATTGTGGCAAGCACATGTCCCCATACACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
3UTR GCA 72 bp GGATGGAAAGATAGTTCAGGGGTTAGGAATACTTGGTaGTCTTTCAAAATGCTCAGGCTCAGTTCCCAGCAC +
Preference number: 3 (lower is better)
Translates to: GWKDSSGVRNTW*SFKMLRLSSQH
Trigger: GTGCTGGGAACTGAGCCTGAGCATTTTGAAAGAGCACCAAGTATTCCTAACCCCTGAACTATCTTTCCATCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
3UTR CCA 72 bp TATAACTCTGATTCCAAGGGATCCAACAGCCTCTTCTaGCCTCTGAAGACTCCAGGCATGCACTACATACAT +
Preference number: 3 (lower is better)
Translates to: YNSDSKGSNSLF*PLKTPGMHYIH
Trigger: ATGTATGTAGTGCATGCCTGGAGTCTTCAGAGGCCAGAAGAGGCTGTTGGATCCCTTGGAATCAGAGTTATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
3UTR TCA 72 bp GAAAACAAAACAAAGTCCTCAGATCTGGCATCTCACTaGGTGCTGACTGGGAAATACAGGCCCTCAAGATGT +
Preference number: 3 (lower is better)
Translates to: ENKTKSSDLASH*VLTGKYRPSRC
Trigger: ACATCTTGAGGGCCTGTATTTCCCAGTCAGCACTCAGTGAGATGCCAGATCTGAGGACTTTGTTTTGTTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
3UTR CCA 72 bp CAGAGGACAAGAGTAGAGTCAGCTCTTTCCACTATTTaGGTAACAGGGATAGAACTCAGATTGTTGGGCTTG +
Preference number: 3 (lower is better)
Translates to: QRTRVESALSTI*VTGIELRLLGL
Trigger: CAAGCCCAACAATCTGAGTTCTATCCCTGTTACCCAAATAGTGGAAAGAGCTGACTCTACTCTTGTCCTCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
3UTR CCA 72 bp GGTGGTTGTGAGTTGTGTGACATTTATAAAGTAGTCTaGAGATGGAGAGATGGCTCAGCAGTTAAGAGCACT +
Preference number: 3 (lower is better)
Translates to: GGCELCDIYKVV*RWRDGSAVKST
Trigger: AGTGCTCTTAACTGCTGAGCCATCTCTCCATCTCCAGACTACTTTATAAATGTCACACAACTCACAACCACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
3UTR TCA 72 bp ATTCCAGGGCTTCTGATTCTGGTCTCCATGGGCATATaGTACACATGCATCCATGCTGGCAAAATATTCATA +
Preference number: 3 (lower is better)
Translates to: IPGLLILVSMGI*YTCIHAGKIFI
Trigger: TATGAATATTTTGCCAGCATGGATGCATGTGTATCATATGCCCATGGAGACCAGAATCAGAAGCCCTGGAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
3UTR CCA 72 bp TTTCAAAATGCTCAGGCTCAGTTCCCAGCACCTACGTaGCAGTTTACAAATATCTATAACTCTGATTCCAAG +
Preference number: 3 (lower is better)
Translates to: FQNAQAQFPAPT*QFTNIYNSDSK
Trigger: CTTGGAATCAGAGTTATAGATATTTGTAAACTGCCACGTAGGTGCTGGGAACTGAGCCTGAGCATTTTGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
3UTR CCA 72 bp AATGTTCCTTACTTAACTCTAATGCTAAACATAGTGTaGACTATGATCAGACCCTCTCCTCCCTATCTACCA +
Preference number: 3 (lower is better)
Translates to: NVPYLTLMLNIV*TMIRPSPPYLP
Trigger: TGGTAGATAGGGAGGAGAGGGTCTGATCATAGTCCACACTATGTTTAGCATTAGAGTTAAGTAAGGAACATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
3UTR GCA 72 bp TCTGGTCTCCATGGGCATATGATACACATGCATCCATaGTGGCAAAATATTCATATCCATAAGATAAATCTA +
Preference number: 3 (lower is better)
Translates to: SGLHGHMIHMHP*WQNIHIHKINL
Trigger: TAGATTTATCTTATGGATATGAATATTTTGCCAGCATGGATGCATGTGTATCATATGCCCATGGAGACCAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
CDS-3UTR CCA 90 bp TGGCCCTCCAGTCTTTCTCTGTGTCCTCTTCGGTCCCAATATACACCTCCAGGGCAGCAACTCCTCATGTaGCCACTGGTGGTCTTCCTG +
Preference number: 4 (lower is better)
Translates to: WPSSLSLCPLRSQYTPPGQQLLM*PLVVFL
Trigger: CAGGAAGACCACCAGTGGCCACATGAGGAGTTGCTG...CCCTGGAGGTGTATATTGGGACCGAAGAGGACACAGAGAAAGACTGGAGGGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
CDS-3UTR CCA 90 bp GGCCCTCCAGTCTTTCTCTGTGTCCTCTTCGGTCCCAATATACACCTCCAGGGGGCTGCTTTTTCTTTCTaGGCAAGTCGGATCTGCTGC +
Preference number: 4 (lower is better)
Translates to: GPPVFLCVLFGPNIHLQGAAFSF*ASRICC
Trigger: GCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGC...CCCCTGGAGGTGTATATTGGGACCGAAGAGGACACAGAGAAAGACTGGAGGGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
CDS-3UTR GCA 90 bp TGGCCCTCCAGTCTTTCTCTGTGTCCTCTTCGGTCCCAATATACACCTCCAGGGACCAAGATCCATCCTTaGTACTCTCTGGCACAAGGG +
Preference number: 4 (lower is better)
Translates to: WPSSLSLCPLRSQYTPPGTKIHP*YSLAQG
Trigger: CCCTTGTGCCAGAGAGTAGCAAGGATGGATCTTGGT...CCCTGGAGGTGTATATTGGGACCGAAGAGGACACAGAGAAAGACTGGAGGGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
CDS-3UTR GCA 90 bp TGCTGTGTGTATGGGGACATGTGCTTGCCACAATTCAAGTGTGGAAGCCAGAGGCGCTTCTTGAGGTGGTaGTTCGTAGTCAGCCCTTCG +
Preference number: 4 (lower is better)
Translates to: CCVYGDMCLPQFKCGSQRRFLRW*FVVSPS
Trigger: CGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCG...CCTCTGGCTTCCACACTTGAATTGTGGCAAGCACATGTCCCCATACACACAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
CDS-3UTR CCA 90 bp GTATGGGGACATGTGCTTGCCACAATTCAAGTGTGGAAGCCAGAGGACAAGAGTAGATGTGGGATCCTGTaGGATCCAGGCCCAACCTGG +
Preference number: 4 (lower is better)
Translates to: VWGHVLATIQVWKPEDKSRCGIL*DPGPTW
Trigger: CCAGGTTGGGCCTGGATCCCACAGGATCCCACATCT...ACTCTTGTCCTCTGGCTTCCACACTTGAATTGTGGCAAGCACATGTCCCCATAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
CDS-3UTR TCA 90 bp GCAGGGATTTTAGCTCTTATCTTCAAGATCCTCCATAGCTACGTCCTGGGGAGCAGGGGGTTGGCCAACTaGGGACTTTCTGGATGCCAT +
Preference number: 4 (lower is better)
Translates to: AGILALIFKILHSYVLGSRGLAN*GLSGCH
Trigger: ATGGCATCCAGAAAGTCCTCAGTTGGCCAACCCCCT...GCTCCCCAGGACGTAGCTATGGAGGATCTTGAAGATAAGAGCTAAAATCCCTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
CDS-3UTR TCA 90 bp TTGGTGCTCTTTCAAAATGCTCAGGCTCAGTTCCCAGCACCTACGTGGCAGTTTAAGGCATCTTGTTCTTaGCCCCAGCCAAGTCCAGGG +
Preference number: 4 (lower is better)
Translates to: LVLFQNAQAQFPAPTWQFKASCS*PQPSPG
Trigger: CCCTGGACTTGGCTGGGGTCAAGAACAAGATGCCTT...AAACTGCCACGTAGGTGCTGGGAACTGAGCCTGAGCATTTTGAAAGAGCACCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
CDS-3UTR CCA 90 bp GCAGGCAGATTTCTGAAGTTCGAGGCCAGCCTGGTCTACAGAGAGTTCCAGGACACTTTCTGGATGCCATaGAGAGTCTGGGTTATCTCC +
Preference number: 4 (lower is better)
Translates to: AGRFLKFEASLVYREFQDTFWMP*RVWVIS
Trigger: GGAGATAACCCAGACTCTCCATGGCATCCAGAAAGT...GTCCTGGAACTCTCTGTAGACCAGGCTGGCCTCGAACTTCAGAAATCTGCCTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
CDS-3UTR CCA 90 bp AGCCTCTTCTGGCCTCTGAAGACTCCAGGCATGCACTACATACATAGTGTACACGATGCAGGACCCTGTTaGGTCCCAAAGAGGACAGAG +
Preference number: 4 (lower is better)
Translates to: SLFWPLKTPGMHYIHSVHDAGPC*VPKRTE
Trigger: CTCTGTCCTCTTTGGGACCCAACAGGGTCCTGCATC...GTGTACACTATGTATGTAGTGCATGCCTGGAGTCTTCAGAGGCCAGAAGAGGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
CDS-3UTR CCA 90 bp GTATGGGGACATGTGCTTGCCACAATTCAAGTGTGGAAGCCAGAGGACAAGAGTTCATGTGGCCACTGGTaGTCTTCCTGGTCTTCCTCA +
Preference number: 4 (lower is better)
Translates to: VWGHVLATIQVWKPEDKSSCGHW*SSWSSS
Trigger: TGAGGAAGACCAGGAAGACCACCAGTGGCCACATGA...ACTCTTGTCCTCTGGCTTCCACACTTGAATTGTGGCAAGCACATGTCCCCATAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
CDS-3UTR CCA 90 bp GCAGGGATTTTAGCTCTTATCTTCAAGATCCTCCATAGCTACGTCCTGGGGAGCGATCCAGGCCCAACCTaGCTCTTCACTTTGATCCTG +
Preference number: 4 (lower is better)
Translates to: AGILALIFKILHSYVLGSDPGPT*LFTLIL
Trigger: CAGGATCAAAGTGAAGAGCCAGGTTGGGCCTGGATC...GCTCCCCAGGACGTAGCTATGGAGGATCTTGAAGATAAGAGCTAAAATCCCTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
CDS-3UTR TCA 90 bp GGGGAGGGCACTGAAGAAGCTAACCAGTTTCATTTTGAGATAGGGTCTTACAGCTTCCTCACTCCCCTCTaGGGCCTCTACCACAATAGA +
Preference number: 4 (lower is better)
Translates to: GEGTEEANQFHFEIGSYSFLTPL*GLYHNR
Trigger: TCTATTGTGGTAGAGGCCTCAGAGGGGAGTGAGGAA...GCTGTAAGACCCTATCTCAAAATGAAACTGGTTAGCTTCTTCAGTGCCCTCCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
CDS-3UTR TCA 90 bp TTGGTGCTCTTTCAAAATGCTCAGGCTCAGTTCCCAGCACCTACGTGGCAGTTTATACCCTGCGGCGCTTaGACAACTTCTTCTTCAGCT +
Preference number: 4 (lower is better)
Translates to: LVLFQNAQAQFPAPTWQFIPCGA*TTSSSA
Trigger: AGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTAT...AAACTGCCACGTAGGTGCTGGGAACTGAGCCTGAGCATTTTGAAAGAGCACCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
CDS-3UTR CCA 90 bp TTGGTGCTCTTTCAAAATGCTCAGGCTCAGTTCCCAGCACCTACGTGGCAGTTTCAACTGAGGACTTTCTaGATGCCATGGAGAGTCTGG +
Preference number: 4 (lower is better)
Translates to: LVLFQNAQAQFPAPTWQFQLRTF*MPWRVW
Trigger: CCAGACTCTCCATGGCATCCAGAAAGTCCTCAGTTG...AAACTGCCACGTAGGTGCTGGGAACTGAGCCTGAGCATTTTGAAAGAGCACCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
CDS-3UTR CCA 90 bp GGCCCTCCAGTCTTTCTCTGTGTCCTCTTCGGTCCCAATATACACCTCCAGGGGAAAAGTACTGAGAGGTaGGAAATGGGGATATTCCAT +
Preference number: 4 (lower is better)
Translates to: GPPVFLCVLFGPNIHLQGKSTER*EMGIFH
Trigger: ATGGAATATCCCCATTTCCCACCTCTCAGTACTTTT...CCCCTGGAGGTGTATATTGGGACCGAAGAGGACACAGAGAAAGACTGGAGGGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
CDS-3UTR CCA 90 bp ATGTGTCCTTCTTCTGAAGTGTCTCCACCCACACGCAAAGGCCTTTCTACATGGTTCTTAAAGGAGATGTaGGATCCTGTGGGATCCAGG +
Preference number: 4 (lower is better)
Translates to: MCPSSEVSPPTRKGLSTWFLKEM*DPVGSR
Trigger: CCTGGATCCCACAGGATCCCACATCTCCTTTAAGAA...CCATGTAGAAAGGCCTTTGCGTGTGGGTGGAGACACTTCAGAAGAAGGACACAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
CDS-3UTR CCA 90 bp GCAGGGATTTTAGCTCTTATCTTCAAGATCCTCCATAGCTACGTCCTGGGGAGCAAAGAGGACAGAGATTaGGAGTTTCCTGACCCTCTG +
Preference number: 4 (lower is better)
Translates to: AGILALIFKILHSYVLGSKEDRD*EFPDPL
Trigger: CAGAGGGTCAGGAAACTCCCAATCTCTGTCCTCTTT...GCTCCCCAGGACGTAGCTATGGAGGATCTTGAAGATAAGAGCTAAAATCCCTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
3UTR CAA 72 bp TCCACTATTTGGGTAACAGGGATAGAACTCAGATTGTaGGGCTTGGGCCAAGTACCCTTACCCCTGAGTTAC +
Preference number: 4 (lower is better)
Translates to: STIWVTGIELRL*GLGQVPLPLSY
Trigger: GTAACTCAGGGGTAAGGGTACTTGGCCCAAGCCCAACAATCTGAGTTCTATCCCTGTTACCCAAATAGTGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
CDS-3UTR CCA 90 bp CTATCTACCACCCTTAATCGTCTGTATGTTCCAGAAATGCAGAATTGGAAGTGTGCCCGCTTCTTGAGGTaGTGCTTCGTAGTCAGCCCT +
Preference number: 4 (lower is better)
Translates to: LSTTLNRLYVPEMQNWKCARFLR*CFVVSP
Trigger: AGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC...ACACTTCCAATTCTGCATTTCTGGAACATACAGACGATTAAGGGTGGTAGATAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
CDS-3UTR CCA 90 bp CTCTTTCAAAATGCTCAGGCTCAGTTCCCAGCACCTACGTGGCAGTTTACAAATATGCCATGGAGAGTCTaGGTTATCTCCAGACCAAGA +
Preference number: 4 (lower is better)
Translates to: LFQNAQAQFPAPTWQFTNMPWRV*VISRPR
Trigger: TCTTGGTCTGGAGATAACCCAGACTCTCCATGGCAT...ATTTGTAAACTGCCACGTAGGTGCTGGGAACTGAGCCTGAGCATTTTGAAAGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
CDS-3UTR CCA 90 bp CTATCTACCACCCTTAATCGTCTGTATGTTCCAGAAATGCAGAATTGGAAGTGTCACTGGTGGTCTTCCTaGTCTTCCTCACTCCCCTCT +
Preference number: 4 (lower is better)
Translates to: LSTTLNRLYVPEMQNWKCHWWSS*SSSLPS
Trigger: AGAGGGGAGTGAGGAAGACCAGGAAGACCACCAGTG...ACACTTCCAATTCTGCATTTCTGGAACATACAGACGATTAAGGGTGGTAGATAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
CDS-3UTR CCA 90 bp TTGGTGCTCTTTCAAAATGCTCAGGCTCAGTTCCCAGCACCTACGTGGCAGTTTCTGAGAGGTGGGAAATaGGGATATTCCATAAATCGT +
Preference number: 4 (lower is better)
Translates to: LVLFQNAQAQFPAPTWQFLRGGK*GYSINR
Trigger: ACGATTTATGGAATATCCCCATTTCCCACCTCTCAG...AAACTGCCACGTAGGTGCTGGGAACTGAGCCTGAGCATTTTGAAAGAGCACCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
3UTR CAA 72 bp TGTTTTGACACTTGCTGTGTGTATGGGGACATGTGCTaGCCACAATTCAAGTGTGGAAGCCAGAGGACAAGA +
Preference number: 4 (lower is better)
Translates to: CFDTCCVYGDMC*PQFKCGSQRTR
Trigger: TCTTGTCCTCTGGCTTCCACACTTGAATTGTGGCAAGCACATGTCCCCATACACACAGCAAGTGTCAAAACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
3UTR CAA 72 bp CCAGAGGACAAGAGTAGAGTCAGCTCTTTCCACTATTaGGGTAACAGGGATAGAACTCAGATTGTTGGGCTT +
Preference number: 4 (lower is better)
Translates to: PEDKSRVSSFHY*GNRDRTQIVGL
Trigger: AAGCCCAACAATCTGAGTTCTATCCCTGTTACCCAAATAGTGGAAAGAGCTGACTCTACTCTTGTCCTCTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
CDS-3UTR GCA 90 bp ACCACCCTTAATCGTCTGTATGTTCCAGAAATGCAGAATTGGAAGTGTTTAGAAATCGTGTTCTATAGATaGAGGACCCTGTTGGGTCCC +
Preference number: 4 (lower is better)
Translates to: TTLNRLYVPEMQNWKCLEIVFYR*RTLLGP
Trigger: GGGACCCAACAGGGTCCTGCATCTATAGAACACGAT...TTCTAAACACTTCCAATTCTGCATTTCTGGAACATACAGACGATTAAGGGTGGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
CDS CCA 90 bp TCAGTGAGCACCAGCAACTCCTCATGTGGCCACTGGTGGTCTTCCTaGTCTTCCTCACTCCCCTCTGAGGCCTCTACCACAATAGAGGGC +
Preference number: 5 (lower is better)
Translates to: SVSTSNSSCGHWWSS*SSSLPSEASTTIEG
Trigger: GCCCTCTATTGTGGTAGAGGCCTCAGAGGGGAGTGAGGAAGACCAGGAAGACCACCAGTGGCCACATGAGGAGTTGCTGGTGCTCACTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
CDS-3UTR CAA 90 bp TGGCCCTCCAGTCTTTCTCTGTGTCCTCTTCGGTCCCAATATACACCTCCAGGGCTGGACGCCCGCTTCTaGAGGTGGTGCTTCGTAGTC +
Preference number: 5 (lower is better)
Translates to: WPSSLSLCPLRSQYTPPGLDARF*RWCFVV
Trigger: GACTACGAAGCACCACCTCAAGAAGCGGGCGTCCAG...CCCTGGAGGTGTATATTGGGACCGAAGAGGACACAGAGAAAGACTGGAGGGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
CDS TCA 90 bp CCTGGCGTTTCCGTCGCCGATCCCTGCTTAATACCCTGCGGCGCTTaGACAACTTCTTCTTCAGCTCCCCCAAAAGTACTGAGAGGTGGG +
Preference number: 5 (lower is better)
Translates to: PGVSVADPCLIPCGA*TTSSSAPPKVLRGG
Trigger: CCCACCTCTCAGTACTTTTGGGGGAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
CDS CCA 90 bp TCTTCACCATCAGTGAGCACCAGCAACTCCTCATGTGGCCACTGGTaGTCTTCCTGGTCTTCCTCACTCCCCTCTGAGGCCTCTACCACA +
Preference number: 5 (lower is better)
Translates to: SSPSVSTSNSSCGHW*SSWSSSLPSEASTT
Trigger: TGTGGTAGAGGCCTCAGAGGGGAGTGAGGAAGACCAGGAAGACCACCAGTGGCCACATGAGGAGTTGCTGGTGCTCACTGATGGTGAAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
CDS CCA 90 bp TCTTCTTCACCATCAGTGAGCACCAGCAACTCCTCATGTGGCCACTaGTGGTCTTCCTGGTCTTCCTCACTCCCCTCTGAGGCCTCTACC +
Preference number: 5 (lower is better)
Translates to: SSSPSVSTSNSSCGH*WSSWSSSLPSEAST
Trigger: GGTAGAGGCCTCAGAGGGGAGTGAGGAAGACCAGGAAGACCACCAGTGGCCACATGAGGAGTTGCTGGTGCTCACTGATGGTGAAGAAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
CDS-3UTR CAA 90 bp GCAGGCAGATTTCTGAAGTTCGAGGCCAGCCTGGTCTACAGAGAGTTCCAGGACCTAGTCCTGGTTGACTaGGAGGGGGCTTCCACTTCC +
Preference number: 5 (lower is better)
Translates to: AGRFLKFEASLVYREFQDLVLVD*EGASTS
Trigger: GGAAGTGGAAGCCCCCTCCAAGTCAACCAGGACTAG...GTCCTGGAACTCTCTGTAGACCAGGCTGGCCTCGAACTTCAGAAATCTGCCTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
CDS TCA 90 bp GATGTGGGATCCTGTGGGATCCAGGCCCAACCTGGCTCTTCACTTTaGTCCTGGAAGAAAGCTTCTGCGTCTTCTTCACCATCAGTGAGC +
Preference number: 5 (lower is better)
Translates to: DVGSCGIQAQPGSSL*SWKKASASSSPSVS
Trigger: GCTCACTGATGGTGAAGAAGACGCAGAAGCTTTCTTCCAGGATCAAAGTGAAGAGCCAGGTTGGGCCTGGATCCCACAGGATCCCACATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
CDS CCA 90 bp AAGGGGGTTGGCCAACTGAGGACTTTCTGGATGCCATGGAGAGTCTaGGTTATCTCCAGACCAAGATCCATCCTTGCTACTCTCTGGCAC +
Preference number: 5 (lower is better)
Translates to: KGVGQLRTFWMPWRV*VISRPRSILATLWH
Trigger: GTGCCAGAGAGTAGCAAGGATGGATCTTGGTCTGGAGATAACCCAGACTCTCCATGGCATCCAGAAAGTCCTCAGTTGGCCAACCCCCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
CDS TCA 90 bp CACTTTGATCCTGGAAGAAAGCTTCTGCGTCTTCTTCACCATCAGTaGGCACCAGCAACTCCTCATGTGGCCACTGGTGGTCTTCCTGGT +
Preference number: 5 (lower is better)
Translates to: HFDPGRKLLRLLHHQ*APATPHVATGGLPG
Trigger: ACCAGGAAGACCACCAGTGGCCACATGAGGAGTTGCTGGTGCTCACTGATGGTGAAGAAGACGCAGAAGCTTTCTTCCAGGATCAAAGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
CDS CCA 90 bp CTTGACCCCAGCCAAGTCCAGGGTTTATTGTTCTTAAAGGAGATGTaGGATCCTGTGGGATCCAGGCCCAACCTGGCTCTTCACTTTGAT +
Preference number: 5 (lower is better)
Translates to: LDPSQVQGLLFLKEM*DPVGSRPNLALHFD
Trigger: ATCAAAGTGAAGAGCCAGGTTGGGCCTGGATCCCACAGGATCCCACATCTCCTTTAAGAACAATAAACCCTGGACTTGGCTGGGGTCAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
CDS-3UTR CAA 90 bp GCAGGCAGATTTCTGAAGTTCGAGGCCAGCCTGGTCTACAGAGAGTTCCAGGACTCTCTTCTCTGTTTTTaGAAAGGGGGTTGGCCAACT +
Preference number: 5 (lower is better)
Translates to: AGRFLKFEASLVYREFQDSLLCF*KGGWPT
Trigger: AGTTGGCCAACCCCCTTTCAAAAAACAGAGAAGAGA...GTCCTGGAACTCTCTGTAGACCAGGCTGGCCTCGAACTTCAGAAATCTGCCTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
CDS-3UTR CAA 90 bp GGCCCTCCAGTCTTTCTCTGTGTCCTCTTCGGTCCCAATATACACCTCCAGGGGCAAGTCCAGGGTTTATaGTTCTTAAAGGAGATGTGG +
Preference number: 5 (lower is better)
Translates to: GPPVFLCVLFGPNIHLQGQVQGL*FLKEMW
Trigger: CCACATCTCCTTTAAGAACAATAAACCCTGGACTTG...CCCCTGGAGGTGTATATTGGGACCGAAGAGGACACAGAGAAAGACTGGAGGGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
CDS-3UTR CAA 90 bp TTGGTGCTCTTTCAAAATGCTCAGGCTCAGTTCCCAGCACCTACGTGGCAGTTTAATACCCTGCGGCGCTaGAACAACTTCTTCTTCAGC +
Preference number: 5 (lower is better)
Translates to: LVLFQNAQAQFPAPTWQFNTLRR*NNFFFS
Trigger: GCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATT...AAACTGCCACGTAGGTGCTGGGAACTGAGCCTGAGCATTTTGAAAGAGCACCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
CDS-3UTR CAA 90 bp GTAGAGTCAGCTCTTTCCACTATTTGGGTAACAGGGATAGAACTCAGATTGTTGAGATGCAGGACCCTGTaGGGTCCCAAAGAGGACAGA +
Preference number: 5 (lower is better)
Translates to: VESALSTIWVTGIELRLLRCRTL*GPKEDR
Trigger: TCTGTCCTCTTTGGGACCCAACAGGGTCCTGCATCT...CAACAATCTGAGTTCTATCCCTGTTACCCAAATAGTGGAAAGAGCTGACTCTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
CDS TCA 72 bp CCACTGGTGGTCTTCCTGGTCTTCCTCACTCCCCTCTaGGGCCTCTACCACAATAGAGGGCAGGCGGGGCTT +
Preference number: 6 (lower is better)
Translates to: PLVVFLVFLTPL*GLYHNRGQAGL
Trigger: AAGCCCCGCCTGCCCTCTATTGTGGTAGAGGCCTCAGAGGGGAGTGAGGAAGACCAGGAAGACCACCAGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
CDS CCA 72 bp ACCAGCAACTCCTCATGTGGCCACTGGTGGTCTTCCTaGTCTTCCTCACTCCCCTCTGAGGCCTCTACCACA +
Preference number: 6 (lower is better)
Translates to: TSNSSCGHWWSS*SSSLPSEASTT
Trigger: TGTGGTAGAGGCCTCAGAGGGGAGTGAGGAAGACCAGGAAGACCACCAGTGGCCACATGAGGAGTTGCTGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
CDS CAA 90 bp ACCTGGCGTTTCCGTCGCCGATCCCTGCTTAATACCCTGCGGCGCTaGAACAACTTCTTCTTCAGCTCCCCCAAAAGTACTGAGAGGTGG +
Preference number: 6 (lower is better)
Translates to: TWRFRRRSLLNTLRR*NNFFFSSPKSTERW
Trigger: CCACCTCTCAGTACTTTTGGGGGAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
CDS CCA 72 bp TTCTTCACCATCAGTGAGCACCAGCAACTCCTCATGTaGCCACTGGTGGTCTTCCTGGTCTTCCTCACTCCC +
Preference number: 6 (lower is better)
Translates to: FFTISEHQQLLM*PLVVFLVFLTP
Trigger: GGGAGTGAGGAAGACCAGGAAGACCACCAGTGGCCACATGAGGAGTTGCTGGTGCTCACTGATGGTGAAGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
CDS TCA 72 bp TCCGTCGCCGATCCCTGCTTAATACCCTGCGGCGCTTaGACAACTTCTTCTTCAGCTCCCCCAAAAGTACTG +
Preference number: 6 (lower is better)
Translates to: SVADPCLIPCGA*TTSSSAPPKVL
Trigger: CAGTACTTTTGGGGGAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
CDS CAA 72 bp TTCCGTCGCCGATCCCTGCTTAATACCCTGCGGCGCTaGAACAACTTCTTCTTCAGCTCCCCCAAAAGTACT +
Preference number: 6 (lower is better)
Translates to: FRRRSLLNTLRR*NNFFFSSPKST
Trigger: AGTACTTTTGGGGGAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
CDS CCA 72 bp GGCCAACTGAGGACTTTCTGGATGCCATGGAGAGTCTaGGTTATCTCCAGACCAAGATCCATCCTTGCTACT +
Preference number: 6 (lower is better)
Translates to: GQLRTFWMPWRV*VISRPRSILAT
Trigger: AGTAGCAAGGATGGATCTTGGTCTGGAGATAACCCAGACTCTCCATGGCATCCAGAAAGTCCTCAGTTGGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
CDS CCA 72 bp AGCCAAGTCCAGGGTTTATTGTTCTTAAAGGAGATGTaGGATCCTGTGGGATCCAGGCCCAACCTGGCTCTT +
Preference number: 6 (lower is better)
Translates to: SQVQGLLFLKEM*DPVGSRPNLAL
Trigger: AAGAGCCAGGTTGGGCCTGGATCCCACAGGATCCCACATCTCCTTTAAGAACAATAAACCCTGGACTTGGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
CDS CAA 72 bp CTGACCCTCTGTATCTTCAGGAATCCAGAAGGCATCTaGTTCTTGACCCCAGCCAAGTCCAGGGTTTATTGT +
Preference number: 6 (lower is better)
Translates to: LTLCIFRNPEGI*FLTPAKSRVYC
Trigger: ACAATAAACCCTGGACTTGGCTGGGGTCAAGAACAAGATGCCTTCTGGATTCCTGAAGATACAGAGGGTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
CDS CAA 90 bp CAACATCCTGATGATCTTCACATCTGCCAGTCTCTTCTCTGTTTTTaGAAAGGGGGTTGGCCAACTGAGGACTTTCTGGATGCCATGGAG +
Preference number: 6 (lower is better)
Translates to: QHPDDLHICQSLLCF*KGGWPTEDFLDAME
Trigger: CTCCATGGCATCCAGAAAGTCCTCAGTTGGCCAACCCCCTTTCAAAAAACAGAGAAGAGACTGGCAGATGTGAAGATCATCAGGATGTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7
CDS TCA 72 bp TCTGTATCTTCAGGAATCCAGAAGGCATCTTGTTCTTaGCCCCAGCCAAGTCCAGGGTTTATTGTTCTTAAA +
Preference number: 6 (lower is better)
Translates to: SVSSGIQKASCS*PQPSPGFIVLK
Trigger: TTTAAGAACAATAAACCCTGGACTTGGCTGGGGTCAAGAACAAGATGCCTTCTGGATTCCTGAAGATACAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187504.7