Pregenerated sensors for LAYN (Mus musculus)
Ensembl gene IDs: ENSMUSG00000060594Ensembl transcript IDs: ENSMUST00000098782.4, ENSMUST00000214993.2, ENSMUST00000217212.2
Found 78 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GCAGCAGCCCCTGGGCAAAGTGCCTTCTCAGAAGGCTCAGCAGGATaGGGCCCTCAGATAAGAAGTACAGCCAGAACTTGGGGACCCAGT | + |
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Preference number: 1 (lower is better) Translates to: AAAPGQSAFSEGSAG*GPQIRSTARTWGPS Trigger: ACTGGGTCCCCAAGTTCTGGCTGTACTTCTTATCTGAGGGCCTCATCCTGCTGAGCCTTCTGAGAAGGCACTTTGCCCAGGGGCTGCTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098782.4 |
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| 3UTR CCA 90 bp | AGAGGGGGATATATGGGCAGTACTGGGAGAAAGGAGTCTCTGAATTaGCTTTTGCAGGGTGCTCATCATAACTCCCTGCTGCCTGTAAGG | + |
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Preference number: 1 (lower is better) Translates to: RGGYMGSTGRKESLN*LLQGAHHNSLLPVR Trigger: CCTTACAGGCAGCAGGGAGTTATGATGAGCACCCTGCAAAAGCCAATTCAGAGACTCCTTTCTCCCAGTACTGCCCATATATCCCCCTCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000217212.2 |
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| 3UTR TCA 90 bp | AAGAGCATCCCTGTCCCCAAATCACACGAGGGAAAGTGGTCGACCTaGCGGTCCATTGTCCTTTATTACTTACTGTGTGTTTTCTATGAA | + |
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Preference number: 1 (lower is better) Translates to: KSIPVPKSHEGKWST*RSIVLYYLLCVFYE Trigger: TTCATAGAAAACACACAGTAAGTAATAAAGGACAATGGACCGTCAGGTCGACCACTTTCCCTCGTGTGATTTGGGGACAGGGATGCTCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000217212.2 |
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| 3UTR-3UTR GCA 90 bp | AGCAGCCCCTGGGCAAAGTGCCTTCTCAGAAGGCTCAGCAGGATGAGGCCCTCAGGACTTGTGATGCTGTaGTTGCCCCTAAGACTGAGC | + |
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Preference number: 2 (lower is better) Translates to: SSPWAKCLLRRLSRMRPSGLVML*LPLRLS Trigger: GCTCAGTCTTAGGGGCAAGCACAGCATCACAAGTCC...TGAGGGCCTCATCCTGCTGAGCCTTCTGAGAAGGCACTTTGCCCAGGGGCTGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098782.4 |
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| 3UTR CAA 90 bp | GGATATATGGGCAGTACTGGGAGAAAGGAGTCTCTGAATTGGCTTTaGCAGGGTGCTCATCATAACTCCCTGCTGCCTGTAAGGGCAAGG | + |
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Preference number: 2 (lower is better) Translates to: GYMGSTGRKESLNWL*QGAHHNSLLPVRAR Trigger: CCTTGCCCTTACAGGCAGCAGGGAGTTATGATGAGCACCCTGCAAAAGCCAATTCAGAGACTCCTTTCTCCCAGTACTGCCCATATATCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000217212.2 |
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| 3UTR CAA 90 bp | CTGTCCCCAAATCACACGAGGGAAAGTGGTCGACCTGACGGTCCATaGTCCTTTATTACTTACTGTGTGTTTTCTATGAAGACATTCCCG | + |
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Preference number: 2 (lower is better) Translates to: LSPNHTRESGRPDGP*SFITYCVFSMKTFP Trigger: CGGGAATGTCTTCATAGAAAACACACAGTAAGTAATAAAGGACAATGGACCGTCAGGTCGACCACTTTCCCTCGTGTGATTTGGGGACAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000217212.2 |
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| 3UTR TCA 72 bp | CCTGGGCAAAGTGCCTTCTCAGAAGGCTCAGCAGGATaGGGCCCTCAGATAAGAAGTACAGCCAGAACTTGG | + |
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Preference number: 3 (lower is better) Translates to: PGQSAFSEGSAG*GPQIRSTARTW Trigger: CCAAGTTCTGGCTGTACTTCTTATCTGAGGGCCTCATCCTGCTGAGCCTTCTGAGAAGGCACTTTGCCCAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098782.4 |
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| 3UTR TCA 72 bp | GTGGGCTTTCCAAGCTCCCTGGTCAGCCCTTCATGCTaGGCAGTGAAAGCACCAGCCCTCAGATATCAGTTA | + |
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Preference number: 3 (lower is better) Translates to: VGFPSSLVSPSC*AVKAPALRYQL Trigger: TAACTGATATCTGAGGGCTGGTGCTTTCACTGCTCAGCATGAAGGGCTGACCAGGGAGCTTGGAAAGCCCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098782.4 |
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| 3UTR-3UTR CAA 90 bp | AGCCACTGGCTGACAATCACTGAGTCTGCTGTGCAGCAGCCCCTGGGCAAAGTGTCTCCTTTTGCATTCTaGCCAGGTTTTTCCTGTGTC | + |
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Preference number: 3 (lower is better) Translates to: SHWLTITESAVQQPLGKVSPFAF*PGFSCV Trigger: GACACAGGAAAAACCTGGCAAGAATGCAAAAGGAGA...CACTTTGCCCAGGGGCTGCTGCACAGCAGACTCAGTGATTGTCAGCCAGTGGCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000098782.4 |
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| 3UTR TCA 72 bp | GGGGATATATGGGCAGTACTGGGAGAAAGGAGTCTCTaGATTGGCTTTTGCAGGGTGCTCATCATAACTCCC | + |
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Preference number: 3 (lower is better) Translates to: GDIWAVLGERSL*IGFCRVLIITP Trigger: GGGAGTTATGATGAGCACCCTGCAAAAGCCAATTCAGAGACTCCTTTCTCCCAGTACTGCCCATATATCCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000217212.2 |
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| 3UTR-3UTR CAA 90 bp | AATTGGCTTTTGCAGGGTGCTCATCATAACTCCCTGCTGCCTGTAAGGGCAAGGCTAACAGAGAAGAGATaGCAGGTACAGAGCAAAGAG | + |
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Preference number: 3 (lower is better) Translates to: NWLLQGAHHNSLLPVRARLTEKR*QVQSKE Trigger: CTCTTTGCTCTGTACCTGCAATCTCTTCTCTGTTAG...CCTTGCCCTTACAGGCAGCAGGGAGTTATGATGAGCACCCTGCAAAAGCCAATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217212.2 |
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| 3UTR TCA 72 bp | CCTGTCCCCAAATCACACGAGGGAAAGTGGTCGACCTaGCGGTCCATTGTCCTTTATTACTTACTGTGTGTT | + |
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Preference number: 3 (lower is better) Translates to: PVPKSHEGKWST*RSIVLYYLLCV Trigger: AACACACAGTAAGTAATAAAGGACAATGGACCGTCAGGTCGACCACTTTCCCTCGTGTGATTTGGGGACAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217212.2 |
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| 3UTR CCA 72 bp | TATATGGGCAGTACTGGGAGAAAGGAGTCTCTGAATTaGCTTTTGCAGGGTGCTCATCATAACTCCCTGCTG | + |
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Preference number: 3 (lower is better) Translates to: YMGSTGRKESLN*LLQGAHHNSLL Trigger: CAGCAGGGAGTTATGATGAGCACCCTGCAAAAGCCAATTCAGAGACTCCTTTCTCCCAGTACTGCCCATATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217212.2 |
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| 3UTR-3UTR CAA 90 bp | TGGGAATTAATTATTGATGTGCAGGCCAGCCTGAGGCATCCATACAGAGGCTTTAGAAATCGGAGGCCTTaGCTTCTCCTTTTGCATTCT | + |
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Preference number: 3 (lower is better) Translates to: WELIIDVQASLRHPYRGFRNRRP*LLLLHS Trigger: AGAATGCAAAAGGAGAAGCAAAGGCCTCCGATTTCT...AAAGCCTCTGTATGGATGCCTCAGGCTGGCCTGCACATCAATAATTAATTCCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098782.4 |
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| CDS-3UTR GCA 90 bp | AGCAGCCCCTGGGCAAAGTGCCTTCTCAGAAGGCTCAGCAGGATGAGGCCCTCACCTCGGCAGACCAGCTaGCCTCCTCTGGGGTCCAAG | + |
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Preference number: 4 (lower is better) Translates to: SSPWAKCLLRRLSRMRPSPRQTS*PPLGSK Trigger: CTTGGACCCCAGAGGAGGGCAGCTGGTCTGCCGAGG...TGAGGGCCTCATCCTGCTGAGCCTTCTGAGAAGGCACTTTGCCCAGGGGCTGCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098782.4 |
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| CDS-3UTR GCA 90 bp | AGCAGCCCCTGGGCAAAGTGCCTTCTCAGAAGGCTCAGCAGGATGAGGCCCTCAGTGGGCCAAATGGTGTaGTGCTCCTTTGTGCTAGGG | + |
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Preference number: 4 (lower is better) Translates to: SSPWAKCLLRRLSRMRPSVGQMV*CSFVLG Trigger: CCCTAGCACAAAGGAGCAGCACACCATTTGGCCCAC...TGAGGGCCTCATCCTGCTGAGCCTTCTGAGAAGGCACTTTGCCCAGGGGCTGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098782.4 |
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| CDS-3UTR TCA 90 bp | CTTTCCAAGCTCCCTGGTCAGCCCTTCATGCTGAGCAGTGAAAGCACCAGCCCTGATGCCGGGTGGTGCTaGTGGCTGATGGTACATGAC | + |
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Preference number: 4 (lower is better) Translates to: LSKLPGQPFMLSSESTSPDAGWC*WLMVHD Trigger: GTCATGTACCATCAGCCATCAGCACCACCCGGCATC...AGGGCTGGTGCTTTCACTGCTCAGCATGAAGGGCTGACCAGGGAGCTTGGAAAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098782.4 |
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| CDS-3UTR GCA 90 bp | CCAGAACTTGGGGACCCAGTAGGGACTTGTGATGCTGTGCTTGCCCCTAAGACTCCCATCCACTCTCCTTaGTCCTCCCCATTCGGTCCG | + |
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Preference number: 4 (lower is better) Translates to: PELGDPVGTCDAVLAPKTPIHSP*SSPFGP Trigger: CGGACCGAATGGGGAGGAGCAAGGAGAGTGGATGGG...AGTCTTAGGGGCAAGCACAGCATCACAAGTCCCTACTGGGTCCCCAAGTTCTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000098782.4 |
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| CDS-3UTR CCA 90 bp | TCCCTGCTGCCTGTAAGGGCAAGGCAAAGATCTGAGAAATGGGCCGGCACCTGGCGGTCATCATTCCACTaGAACATGTACGAGCCCCCG | + |
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Preference number: 4 (lower is better) Translates to: SLLPVRARQRSEKWAGTWRSSFH*NMYEPP Trigger: CGGGGGCTCGTACATGTTCCAGTGGAATGATGACCG...CCAGGTGCCGGCCCATTTCTCAGATCTTTGCCTTGCCCTTACAGGCAGCAGGGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000217212.2 |
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| CDS-3UTR CCA 90 bp | AGCCACTGGCTGACAATCACTGAGTCTGCTGTGCAGCAGCCCCTGGGCAAAGTGGAGGAGTGGGCCAAATaGTGTGCTGCTCCTTTGTGC | + |
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Preference number: 4 (lower is better) Translates to: SHWLTITESAVQQPLGKVEEWAK*CAAPLC Trigger: GCACAAAGGAGCAGCACACCATTTGGCCCACTCCTC...CACTTTGCCCAGGGGCTGCTGCACAGCAGACTCAGTGATTGTCAGCCAGTGGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098782.4 |
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| CDS-3UTR GCA 90 bp | CATAACTCCCTGCTGCCTGTAAGGGCAAGGCAAAGATCTGAGAAATGGGCCGGCCCACGCAGACCTCACTaGCACAGGAAGGCTCATCCA | + |
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Preference number: 4 (lower is better) Translates to: HNSLLPVRARQRSEKWAGPRRPH*HRKAHP Trigger: TGGATGAGCCTTCCTGTGGCAGTGAGGTCTGCGTGG...GCCGGCCCATTTCTCAGATCTTTGCCTTGCCCTTACAGGCAGCAGGGAGTTATG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000217212.2 |
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| CDS-3UTR TCA 90 bp | AGCAGCCCCTGGGCAAAGTGCCTTCTCAGAAGGCTCAGCAGGATGAGGCCCTCACCAGTTCCTAAACTGTaGTGTGCTTCCATCTGTCCA | + |
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Preference number: 4 (lower is better) Translates to: SSPWAKCLLRRLSRMRPSPVPKL*CASICP Trigger: TGGACAGATGGAAGCACATCACAGTTTAGGAACTGG...TGAGGGCCTCATCCTGCTGAGCCTTCTGAGAAGGCACTTTGCCCAGGGGCTGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098782.4 |
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| CDS-3UTR GCA 90 bp | AGAGGGGGATATATGGGCAGTACTGGGAGAAAGGAGTCTCTGAATTGGCTTTTGCCTCGGCAGACCAGCTaGCCTCCTCTGGGGTCCAAG | + |
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Preference number: 4 (lower is better) Translates to: RGGYMGSTGRKESLNWLLPRQTS*PPLGSK Trigger: CTTGGACCCCAGAGGAGGGCAGCTGGTCTGCCGAGG...CAAAAGCCAATTCAGAGACTCCTTTCTCCCAGTACTGCCCATATATCCCCCTCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000217212.2 |
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| CDS-3UTR CCA 90 bp | CATAACTCCCTGCTGCCTGTAAGGGCAAGGCAAAGATCTGAGAAATGGGCCGGCGAGGAGTGGGCCAAATaGTGTGCTGCTCCTTTGTGC | + |
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Preference number: 4 (lower is better) Translates to: HNSLLPVRARQRSEKWAGEEWAK*CAAPLC Trigger: GCACAAAGGAGCAGCACACCATTTGGCCCACTCCTC...GCCGGCCCATTTCTCAGATCTTTGCCTTGCCCTTACAGGCAGCAGGGAGTTATG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000217212.2 |
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| CDS-3UTR TCA 90 bp | AAGAGATTGCAGGTACAGAGCAAAGAGCATCCCTGTCCCCAAATCACACGAGGGGATGCCGGGTGGTGCTaGTGGCTGATGGTACATGAC | + |
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Preference number: 4 (lower is better) Translates to: KRLQVQSKEHPCPQITRGDAGWC*WLMVHD Trigger: GTCATGTACCATCAGCCATCAGCACCACCCGGCATC...CCCTCGTGTGATTTGGGGACAGGGATGCTCTTTGCTCTGTACCTGCAATCTCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000217212.2 |
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| CDS-3UTR TCA 90 bp | AGCAGCCCCTGGGCAAAGTGCCTTCTCAGAAGGCTCAGCAGGATGAGGCCCTCACGTCATGGAAATAAATaGCTTTATAGCAAGGCCTCC | + |
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Preference number: 4 (lower is better) Translates to: SSPWAKCLLRRLSRMRPSRHGNK*LYSKAS Trigger: GGAGGCCTTGCTATAAAGTCATTTATTTCCATGACG...TGAGGGCCTCATCCTGCTGAGCCTTCTGAGAAGGCACTTTGCCCAGGGGCTGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098782.4 |
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| CDS-3UTR GCA 90 bp | AAGAGATTGCAGGTACAGAGCAAAGAGCATCCCTGTCCCCAAATCACACGAGGGGTGGGCCAAATGGTGTaGTGCTCCTTTGTGCTAGGG | + |
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Preference number: 4 (lower is better) Translates to: KRLQVQSKEHPCPQITRGVGQMV*CSFVLG Trigger: CCCTAGCACAAAGGAGCAGCACACCATTTGGCCCAC...CCCTCGTGTGATTTGGGGACAGGGATGCTCTTTGCTCTGTACCTGCAATCTCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000217212.2 |
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| CDS-3UTR CCA 90 bp | TCCCTGCTGCCTGTAAGGGCAAGGCAAAGATCTGAGAAATGGGCCGGCACCTGGCCATGCAGGTTTCTTTaGCTTCCTCAAAGTTCAGTC | + |
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Preference number: 4 (lower is better) Translates to: SLLPVRARQRSEKWAGTWPCRFL*LPQSSV Trigger: GACTGAACTTTGAGGAAGCCAAAGAAACCTGCATGG...CCAGGTGCCGGCCCATTTCTCAGATCTTTGCCTTGCCCTTACAGGCAGCAGGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000217212.2 |
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| CDS-3UTR TCA 90 bp | TCCCTGCTGCCTGTAAGGGCAAGGCAAAGATCTGAGAAATGGGCCGGCACCTGGCGTCATGGAAATAAATaGCTTTATAGCAAGGCCTCC | + |
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Preference number: 4 (lower is better) Translates to: SLLPVRARQRSEKWAGTWRHGNK*LYSKAS Trigger: GGAGGCCTTGCTATAAAGTCATTTATTTCCATGACG...CCAGGTGCCGGCCCATTTCTCAGATCTTTGCCTTGCCCTTACAGGCAGCAGGGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000217212.2 |
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| CDS-3UTR TCA 90 bp | AGAGGGGGATATATGGGCAGTACTGGGAGAAAGGAGTCTCTGAATTGGCTTTTGGGTGGTGCTGATGGCTaGTGGTACATGACCACGCAG | + |
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Preference number: 4 (lower is better) Translates to: RGGYMGSTGRKESLNWLLGGADG*WYMTTQ Trigger: CTGCGTGGTCATGTACCATCAGCCATCAGCACCACC...CAAAAGCCAATTCAGAGACTCCTTTCTCCCAGTACTGCCCATATATCCCCCTCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000217212.2 |
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| CDS-3UTR TCA 90 bp | AGCCACTGGCTGACAATCACTGAGTCTGCTGTGCAGCAGCCCCTGGGCAAAGTGAACATACAGCTGAAGTaGCCACAAGTAGGAGGAAAA | + |
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Preference number: 4 (lower is better) Translates to: SHWLTITESAVQQPLGKVNIQLK*PQVGGK Trigger: TTTTCCTCCTACTTGTGGTCACTTCAGCTGTATGTT...CACTTTGCCCAGGGGCTGCTGCACAGCAGACTCAGTGATTGTCAGCCAGTGGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098782.4 |
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| CDS-3UTR GCA 90 bp | TGTGATGCTGTGCTTGCCCCTAAGACTGAGCTGGGCATTTTCATAAGCTTTCTGCCACGCAGACCTCACTaGCACAGGAAGGCTCATCCA | + |
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Preference number: 4 (lower is better) Translates to: CDAVLAPKTELGIFISFLPRRPH*HRKAHP Trigger: TGGATGAGCCTTCCTGTGGCAGTGAGGTCTGCGTGG...CAGAAAGCTTATGAAAATGCCCAGCTCAGTCTTAGGGGCAAGCACAGCATCACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098782.4 |
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| CDS-3UTR GCA 90 bp | CTTTTGCAGGGTGCTCATCATAACTCCCTGCTGCCTGTAAGGGCAAGGCAAAGAGGCCAAATGGTGTGCTaGTCCTTTGTGCTAGGGTCT | + |
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Preference number: 4 (lower is better) Translates to: LLQGAHHNSLLPVRARQRGQMVC*SFVLGS Trigger: AGACCCTAGCACAAAGGAGCAGCACACCATTTGGCC...TCTTTGCCTTGCCCTTACAGGCAGCAGGGAGTTATGATGAGCACCCTGCAAAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217212.2 |
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| CDS-3UTR TCA 90 bp | AGCCACTGGCTGACAATCACTGAGTCTGCTGTGCAGCAGCCCCTGGGCAAAGTGCCAGGAGGTTTTCAATaGACTTTTCTATCAACCTCT | + |
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Preference number: 4 (lower is better) Translates to: SHWLTITESAVQQPLGKVPGGFQ*TFLSTS Trigger: AGAGGTTGATAGAAAAGTTCATTGAAAACCTCCTGG...CACTTTGCCCAGGGGCTGCTGCACAGCAGACTCAGTGATTGTCAGCCAGTGGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000098782.4 |
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| CDS-3UTR TCA 90 bp | AGAGGGGGATATATGGGCAGTACTGGGAGAAAGGAGTCTCTGAATTGGCTTTTGATGGCTGATGGTACATaGCCACGCAGACCTCACTGC | + |
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Preference number: 4 (lower is better) Translates to: RGGYMGSTGRKESLNWLLMADGT*PRRPHC Trigger: GCAGTGAGGTCTGCGTGGTCATGTACCATCAGCCAT...CAAAAGCCAATTCAGAGACTCCTTTCTCCCAGTACTGCCCATATATCCCCCTCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000217212.2 |
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| CDS-3UTR GCA 90 bp | GTAGGGACTTGTGATGCTGTGCTTGCCCCTAAGACTGAGCTGGGCATTTTCATAGTCCCCCATCCTCCATaGAGGTTTCTTTGGCTTCCT | + |
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Preference number: 4 (lower is better) Translates to: VGTCDAVLAPKTELGIFIVPHPP*RFLWLP Trigger: AGGAAGCCAAAGAAACCTGCATGGAGGATGGGGGAC...TATGAAAATGCCCAGCTCAGTCTTAGGGGCAAGCACAGCATCACAAGTCCCTAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000098782.4 |
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| 3UTR CAA 72 bp | GGCAGTACTGGGAGAAAGGAGTCTCTGAATTGGCTTTaGCAGGGTGCTCATCATAACTCCCTGCTGCCTGTA | + |
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Preference number: 4 (lower is better) Translates to: GSTGRKESLNWL*QGAHHNSLLPV Trigger: TACAGGCAGCAGGGAGTTATGATGAGCACCCTGCAAAAGCCAATTCAGAGACTCCTTTCTCCCAGTACTGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000217212.2 |
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| CDS-3UTR TCA 90 bp | AAGAGATTGCAGGTACAGAGCAAAGAGCATCCCTGTCCCCAAATCACACGAGGGCCAGTTCCTAAACTGTaGTGTGCTTCCATCTGTCCA | + |
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Preference number: 4 (lower is better) Translates to: KRLQVQSKEHPCPQITRGPVPKL*CASICP Trigger: TGGACAGATGGAAGCACATCACAGTTTAGGAACTGG...CCCTCGTGTGATTTGGGGACAGGGATGCTCTTTGCTCTGTACCTGCAATCTCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217212.2 |
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| CDS-3UTR GCA 90 bp | TGGGAATTAATTATTGATGTGCAGGCCAGCCTGAGGCATCCATACAGAGGCTTTGGCCAAATGGTGTGCTaGTCCTTTGTGCTAGGGTCT | + |
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Preference number: 4 (lower is better) Translates to: WELIIDVQASLRHPYRGFGQMVC*SFVLGS Trigger: AGACCCTAGCACAAAGGAGCAGCACACCATTTGGCC...AAAGCCTCTGTATGGATGCCTCAGGCTGGCCTGCACATCAATAATTAATTCCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098782.4 |
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| CDS-3UTR TCA 90 bp | CTTTTGCAGGGTGCTCATCATAACTCCCTGCTGCCTGTAAGGGCAAGGCAAAGAAACATACAGCTGAAGTaGCCACAAGTAGGAGGAAAA | + |
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Preference number: 4 (lower is better) Translates to: LLQGAHHNSLLPVRARQRNIQLK*PQVGGK Trigger: TTTTCCTCCTACTTGTGGTCACTTCAGCTGTATGTT...TCTTTGCCTTGCCCTTACAGGCAGCAGGGAGTTATGATGAGCACCCTGCAAAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217212.2 |
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| CDS-3UTR GCA 90 bp | GGGAAAGTGGTCGACCTGACGGTCCATTGTCCTTTATTACTTACTGTGTGTTTTGTCCCCCATCCTCCATaGAGGTTTCTTTGGCTTCCT | + |
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Preference number: 4 (lower is better) Translates to: GKVVDLTVHCPLLLTVCFVPHPP*RFLWLP Trigger: AGGAAGCCAAAGAAACCTGCATGGAGGATGGGGGAC...AAAACACACAGTAAGTAATAAAGGACAATGGACCGTCAGGTCGACCACTTTCCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000217212.2 |
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| CDS-3UTR TCA 90 bp | AAGAGATTGCAGGTACAGAGCAAAGAGCATCCCTGTCCCCAAATCACACGAGGGCCAGGAGGTTTTCAATaGACTTTTCTATCAACCTCT | + |
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Preference number: 4 (lower is better) Translates to: KRLQVQSKEHPCPQITRGPGGFQ*TFLSTS Trigger: AGAGGTTGATAGAAAAGTTCATTGAAAACCTCCTGG...CCCTCGTGTGATTTGGGGACAGGGATGCTCTTTGCTCTGTACCTGCAATCTCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000217212.2 |
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| CDS-3UTR TCA 90 bp | AAGCTTTCTGAATATTGTCCTTGTAAGAAATCGGAGGCCTTTGCTTCTCCTTTTGGTGGTGCTGATGGCTaGTGGTACATGACCACGCAG | + |
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Preference number: 4 (lower is better) Translates to: KLSEYCPCKKSEAFASPFGGADG*WYMTTQ Trigger: CTGCGTGGTCATGTACCATCAGCCATCAGCACCACC...AAAAGGAGAAGCAAAGGCCTCCGATTTCTTACAAGGACAATATTCAGAAAGCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098782.4 |
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| CDS-3UTR CCA 90 bp | CTGAATATTGTCCTTGTAAGAAATCGGAGGCCTTTGCTTCTCCTTTTGCATTCTCGGTCATCATTCCACTaGAACATGTACGAGCCCCCG | + |
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Preference number: 4 (lower is better) Translates to: LNIVLVRNRRPLLLLLHSRSSFH*NMYEPP Trigger: CGGGGGCTCGTACATGTTCCAGTGGAATGATGACCG...AGAATGCAAAAGGAGAAGCAAAGGCCTCCGATTTCTTACAAGGACAATATTCAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098782.4 |
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| CDS-3UTR TCA 90 bp | TTCATAAGCTTTCTGAATATTGTCCTTGTAAGAAATCGGAGGCCTTTGCTTCTCTCTCCTCCAGCCTCTTaGGGCCAATCCAGAAGTCAC | + |
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Preference number: 4 (lower is better) Translates to: FISFLNIVLVRNRRPLLLSPPAS*GQSRSH Trigger: GTGACTTCTGGATTGGCCTCAAGAGGCTGGAGGAGA...GAGAAGCAAAGGCCTCCGATTTCTTACAAGGACAATATTCAGAAAGCTTATGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098782.4 |
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| CDS-3UTR TCA 90 bp | ACTGAGCTGGGCATTTTCATAAGCTTTCTGAATATTGTCCTTGTAAGAAATCGGATGGCTGATGGTACATaGCCACGCAGACCTCACTGC | + |
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Preference number: 4 (lower is better) Translates to: TELGIFISFLNIVLVRNRMADGT*PRRPHC Trigger: GCAGTGAGGTCTGCGTGGTCATGTACCATCAGCCAT...CCGATTTCTTACAAGGACAATATTCAGAAAGCTTATGAAAATGCCCAGCTCAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098782.4 |
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| CDS-3UTR CCA 90 bp | GTGCTTGCCCCTAAGACTGAGCTGGGCATTTTCATAAGCTTTCTGAATATTGTCTGTAAACATCTAGGTTaGGGCTGTTTTCTTGGCGAG | + |
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Preference number: 4 (lower is better) Translates to: VLAPKTELGIFISFLNIVCKHLG*GCFLGE Trigger: CTCGCCAAGAAAACAGCCCCAACCTAGATGTTTACA...GACAATATTCAGAAAGCTTATGAAAATGCCCAGCTCAGTCTTAGGGGCAAGCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000098782.4 |
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| CDS-3UTR CCA 90 bp | AGGGAAAGTGGTCGACCTGACGGTCCATTGTCCTTTATTACTTACTGTGTGTTTTGTAAACATCTAGGTTaGGGCTGTTTTCTTGGCGAG | + |
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Preference number: 4 (lower is better) Translates to: RESGRPDGPLSFITYCVFCKHLG*GCFLGE Trigger: CTCGCCAAGAAAACAGCCCCAACCTAGATGTTTACA...AAACACACAGTAAGTAATAAAGGACAATGGACCGTCAGGTCGACCACTTTCCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000217212.2 |
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| 3UTR CAA 72 bp | AATCACACGAGGGAAAGTGGTCGACCTGACGGTCCATaGTCCTTTATTACTTACTGTGTGTTTTCTATGAAG | + |
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Preference number: 4 (lower is better) Translates to: NHTRESGRPDGP*SFITYCVFSMK Trigger: CTTCATAGAAAACACACAGTAAGTAATAAAGGACAATGGACCGTCAGGTCGACCACTTTCCCTCGTGTGATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217212.2 |
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| CDS-3UTR CCA 90 bp | TGGGAATTAATTATTGATGTGCAGGCCAGCCTGAGGCATCCATACAGAGGCTTTATTCATAGATGTCATTaGTCACAAATCCACTCTCCA | + |
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Preference number: 4 (lower is better) Translates to: WELIIDVQASLRHPYRGFIHRCH*SQIHSP Trigger: TGGAGAGTGGATTTGTGACCAATGACATCTATGAAT...AAAGCCTCTGTATGGATGCCTCAGGCTGGCCTGCACATCAATAATTAATTCCCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098782.4 |
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| 3UTR CAA 72 bp | ATGGTTTTCCTTAAATACTTTCTAACAGAGAAGAGATaGCAGGTACAGAGCAAAGAGCATCCCTGTCCCCAA | + |
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Preference number: 4 (lower is better) Translates to: MVFLKYFLTEKR*QVQSKEHPCPQ Trigger: TTGGGGACAGGGATGCTCTTTGCTCTGTACCTGCAATCTCTTCTCTGTTAGAAAGTATTTAAGGAAAACCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000217212.2 |
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| CDS-3UTR GCA 90 bp | ACTGAGCTGGGCATTTTCATAAGCTTTCTGAATATTGTCCTTGTAAGAAATCGGTCCACTCTCCATACTTaGCAAAGTCACAAACCCACT | + |
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Preference number: 4 (lower is better) Translates to: TELGIFISFLNIVLVRNRSTLHT*QSHKPT Trigger: AGTGGGTTTGTGACTTTGGCAAGTATGGAGAGTGGA...CCGATTTCTTACAAGGACAATATTCAGAAAGCTTATGAAAATGCCCAGCTCAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098782.4 |
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| CDS-3UTR CCA 90 bp | TTCATAAGCTTTCTGAATATTGTCCTTGTAAGAAATCGGAGGCCTTTGCTTCTCCCATGCAGGTTTCTTTaGCTTCCTCAAAGTTCAGTC | + |
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Preference number: 4 (lower is better) Translates to: FISFLNIVLVRNRRPLLLPCRFL*LPQSSV Trigger: GACTGAACTTTGAGGAAGCCAAAGAAACCTGCATGG...GAGAAGCAAAGGCCTCCGATTTCTTACAAGGACAATATTCAGAAAGCTTATGAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098782.4 |
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| CDS-3UTR GCA 90 bp | AAGCTTTCTGAATATTGTCCTTGTAAGAAATCGGAGGCCTTTGCTTCTCCTTTTGAAGTCACCATCAGATaGCAGGAGGTTTTCAATGAA | + |
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Preference number: 4 (lower is better) Translates to: KLSEYCPCKKSEAFASPFEVTIR*QEVFNE Trigger: TTCATTGAAAACCTCCTGGCATCTGATGGTGACTTC...AAAAGGAGAAGCAAAGGCCTCCGATTTCTTACAAGGACAATATTCAGAAAGCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098782.4 |
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| CDS-3UTR CCA 90 bp | ACTGAGCTGGGCATTTTCATAAGCTTTCTGAATATTGTCCTTGTAAGAAATCGGGGAAAAGGGGAATACTaGGAATTAGGATGTAGGCAA | + |
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Preference number: 4 (lower is better) Translates to: TELGIFISFLNIVLVRNRGKGEY*ELGCRQ Trigger: TTGCCTACATCCTAATTCCCAGTATTCCCCTTTTCC...CCGATTTCTTACAAGGACAATATTCAGAAAGCTTATGAAAATGCCCAGCTCAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000098782.4 |
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| CDS TCA 90 bp | TGTACGAGCCCCCGATGCCGGGTGGTGCTGATGGCTGATGGTACATaGCCACGCAGACCTCACTGCCACAGGAAGGCTCATCCACATACC | + |
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Preference number: 5 (lower is better) Translates to: CTSPRCRVVLMADGT*PRRPHCHRKAHPHT Trigger: GGTATGTGGATGAGCCTTCCTGTGGCAGTGAGGTCTGCGTGGTCATGTACCATCAGCCATCAGCACCACCCGGCATCGGGGGCTCGTACA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000098782.4 ENSMUST00000217212.2 |
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| CDS TCA 90 bp | CACTGGAACATGTACGAGCCCCCGATGCCGGGTGGTGCTGATGGCTaGTGGTACATGACCACGCAGACCTCACTGCCACAGGAAGGCTCA | + |
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Preference number: 5 (lower is better) Translates to: HWNMYEPPMPGGADG*WYMTTQTSLPQEGS Trigger: TGAGCCTTCCTGTGGCAGTGAGGTCTGCGTGGTCATGTACCATCAGCCATCAGCACCACCCGGCATCGGGGGCTCGTACATGTTCCAGTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000098782.4 ENSMUST00000217212.2 |
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| CDS TCA 90 bp | ATCATTCCACTGGAACATGTACGAGCCCCCGATGCCGGGTGGTGCTaGTGGCTGATGGTACATGACCACGCAGACCTCACTGCCACAGGA | + |
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Preference number: 5 (lower is better) Translates to: IIPLEHVRAPDAGWC*WLMVHDHADLTATG Trigger: TCCTGTGGCAGTGAGGTCTGCGTGGTCATGTACCATCAGCCATCAGCACCACCCGGCATCGGGGGCTCGTACATGTTCCAGTGGAATGAT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000098782.4 ENSMUST00000217212.2 |
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| CDS-3UTR CAA 90 bp | CCAGAACTTGGGGACCCAGTAGGGACTTGTGATGCTGTGCTTGCCCCTAAGACTGTTGGGGCTGTTTTCTaGGCGAGGAGTGGGCCAAAT | + |
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Preference number: 5 (lower is better) Translates to: PELGDPVGTCDAVLAPKTVGAVF*ARSGPN Trigger: ATTTGGCCCACTCCTCGCCAAGAAAACAGCCCCAAC...AGTCTTAGGGGCAAGCACAGCATCACAAGTCCCTACTGGGTCCCCAAGTTCTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000098782.4 |
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| CDS-3UTR CAA 90 bp | AAGAGATTGCAGGTACAGAGCAAAGAGCATCCCTGTCCCCAAATCACACGAGGGGTTGGGGCTGTTTTCTaGGCGAGGAGTGGGCCAAAT | + |
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Preference number: 5 (lower is better) Translates to: KRLQVQSKEHPCPQITRGVGAVF*ARSGPN Trigger: ATTTGGCCCACTCCTCGCCAAGAAAACAGCCCCAAC...CCCTCGTGTGATTTGGGGACAGGGATGCTCTTTGCTCTGTACCTGCAATCTCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000217212.2 |
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| CDS CCA 90 bp | CCTTGCTCCTCCCCATTCGGTCCGGGGAGAATTCATAGATGTCATTaGTCACAAATCCACTCTCCATACTTGCCAAAGTCACAAACCCAC | + |
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Preference number: 5 (lower is better) Translates to: PCSSPFGPGRIHRCH*SQIHSPYLPKSQTH Trigger: GTGGGTTTGTGACTTTGGCAAGTATGGAGAGTGGATTTGTGACCAATGACATCTATGAATTCTCCCCGGACCGAATGGGGAGGAGCAAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098782.4 |
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| CDS-3UTR CAA 90 bp | CTTTCCAAGCTCCCTGGTCAGCCCTTCATGCTGAGCAGTGAAAGCACCAGCCCTCTCAAAGTTCAGTCTTaGAAAGGCGTCATGGAAATA | + |
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Preference number: 5 (lower is better) Translates to: LSKLPGQPFMLSSESTSPLKVQS*KGVMEI Trigger: TATTTCCATGACGCCTTTCAAAGACTGAACTTTGAG...AGGGCTGGTGCTTTCACTGCTCAGCATGAAGGGCTGACCAGGGAGCTTGGAAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098782.4 |
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| CDS TCA 90 bp | TGGCTTCCTCAAAGTTCAGTCTTTGAAAGGCGTCATGGAAATAAATaGCTTTATAGCAAGGCCTCCGTGTTCCTCCTCGGCAGACCAGCT | + |
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Preference number: 5 (lower is better) Translates to: WLPQSSVFERRHGNK*LYSKASVFLLGRPA Trigger: AGCTGGTCTGCCGAGGAGGAACACGGAGGCCTTGCTATAAAGTCATTTATTTCCATGACGCCTTTCAAAGACTGAACTTTGAGGAAGCCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000098782.4 ENSMUST00000214993.2 ENSMUST00000217212.2 |
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| CDS GCA 90 bp | TTTCTCCTCCAGCCTCTTGAGGCCAATCCAGAAGTCACCATCAGATaGCAGGAGGTTTTCAATGAACTTTTCTATCAACCTCTGCTCATC | + |
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Preference number: 5 (lower is better) Translates to: FLLQPLEANPEVTIR*QEVFNELFYQPLLI Trigger: GATGAGCAGAGGTTGATAGAAAAGTTCATTGAAAACCTCCTGGCATCTGATGGTGACTTCTGGATTGGCCTCAAGAGGCTGGAGGAGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000098782.4 ENSMUST00000214993.2 ENSMUST00000217212.2 |
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| CDS-3UTR CAA 90 bp | AAGAGATTGCAGGTACAGAGCAAAGAGCATCCCTGTCCCCAAATCACACGAGGGCTCAAAGTTCAGTCTTaGAAAGGCGTCATGGAAATA | + |
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Preference number: 5 (lower is better) Translates to: KRLQVQSKEHPCPQITRGLKVQS*KGVMEI Trigger: TATTTCCATGACGCCTTTCAAAGACTGAACTTTGAG...CCCTCGTGTGATTTGGGGACAGGGATGCTCTTTGCTCTGTACCTGCAATCTCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217212.2 |
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| CDS-3UTR CAA 90 bp | AGGGAAAGTGGTCGACCTGACGGTCCATTGTCCTTTATTACTTACTGTGTGTTTTCCATGCAGGTTTCTTaGGCTTCCTCAAAGTTCAGT | + |
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Preference number: 5 (lower is better) Translates to: RESGRPDGPLSFITYCVFSMQVS*ASSKFS Trigger: ACTGAACTTTGAGGAAGCCAAAGAAACCTGCATGGA...AAACACACAGTAAGTAATAAAGGACAATGGACCGTCAGGTCGACCACTTTCCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217212.2 |
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| CDS-3UTR CAA 90 bp | TCTGAATATTGTCCTTGTAAGAAATCGGAGGCCTTTGCTTCTCCTTTTGCATTCATCCACTCTCCATACTaGCCAAAGTCACAAACCCAC | + |
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Preference number: 5 (lower is better) Translates to: SEYCPCKKSEAFASPFAFIHSPY*PKSQTH Trigger: GTGGGTTTGTGACTTTGGCAAGTATGGAGAGTGGAT...GAATGCAAAAGGAGAAGCAAAGGCCTCCGATTTCTTACAAGGACAATATTCAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098782.4 |
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| CDS-3UTR CAA 90 bp | TCTGAATATTGTCCTTGTAAGAAATCGGAGGCCTTTGCTTCTCCTTTTGCATTCTCCATGCAGGTTTCTTaGGCTTCCTCAAAGTTCAGT | + |
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Preference number: 5 (lower is better) Translates to: SEYCPCKKSEAFASPFAFSMQVS*ASSKFS Trigger: ACTGAACTTTGAGGAAGCCAAAGAAACCTGCATGGA...GAATGCAAAAGGAGAAGCAAAGGCCTCCGATTTCTTACAAGGACAATATTCAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098782.4 |
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| CDS-3UTR CAA 90 bp | TGGGAATTAATTATTGATGTGCAGGCCAGCCTGAGGCATCCATACAGAGGCTTTTATTTGCAAATGAAATaGTTCTTCATGTTGCACCGG | + |
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Preference number: 5 (lower is better) Translates to: WELIIDVQASLRHPYRGFYLQMK*FFMLHR Trigger: CCGGTGCAACATGAAGAACAATTTCATTTGCAAATA...AAAGCCTCTGTATGGATGCCTCAGGCTGGCCTGCACATCAATAATTAATTCCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098782.4 |
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| CDS TCA 90 bp | TCACCTCCAGGCCAAATAGAGGGTGTTGTACTTGGTTTATCGTCATaGTATTTGCAAATGAAATTGTTCTTCATGTTGCACCGGTCATCA | + |
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Preference number: 5 (lower is better) Translates to: SPPGQIEGVVLGLSS*YLQMKLFFMLHRSS Trigger: TGATGACCGGTGCAACATGAAGAACAATTTCATTTGCAAATATCATGACGATAAACCAAGTACAACACCCTCTATTTGGCCTGGAGGTGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098782.4 ENSMUST00000217212.2 |
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| CDS CCA 72 bp | TCCGTGTTCCTCCTCGGCAGACCAGCTGCCCTCCTCTaGGGTCCAAGTCCGAGGCGCTCAGCAGGCGACCCT | + |
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Preference number: 6 (lower is better) Translates to: SVFLLGRPAALL*GPSPRRSAGDP Trigger: AGGGTCGCCTGCTGAGCGCCTCGGACTTGGACCCCAGAGGAGGGCAGCTGGTCTGCCGAGGAGGAACACGGA 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098782.4 ENSMUST00000217212.2 |
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| CDS TCA 72 bp | CCCCGATGCCGGGTGGTGCTGATGGCTGATGGTACATaGCCACGCAGACCTCACTGCCACAGGAAGGCTCAT | + |
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Preference number: 6 (lower is better) Translates to: PRCRVVLMADGT*PRRPHCHRKAH Trigger: ATGAGCCTTCCTGTGGCAGTGAGGTCTGCGTGGTCATGTACCATCAGCCATCAGCACCACCCGGCATCGGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098782.4 ENSMUST00000217212.2 |
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| CDS TCA 72 bp | ATGTACGAGCCCCCGATGCCGGGTGGTGCTGATGGCTaGTGGTACATGACCACGCAGACCTCACTGCCACAG | + |
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Preference number: 6 (lower is better) Translates to: MYEPPMPGGADG*WYMTTQTSLPQ Trigger: CTGTGGCAGTGAGGTCTGCGTGGTCATGTACCATCAGCCATCAGCACCACCCGGCATCGGGGGCTCGTACAT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000098782.4 ENSMUST00000217212.2 |
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| CDS TCA 72 bp | CTGGAACATGTACGAGCCCCCGATGCCGGGTGGTGCTaGTGGCTGATGGTACATGACCACGCAGACCTCACT | + |
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Preference number: 6 (lower is better) Translates to: LEHVRAPDAGWC*WLMVHDHADLT Trigger: AGTGAGGTCTGCGTGGTCATGTACCATCAGCCATCAGCACCACCCGGCATCGGGGGCTCGTACATGTTCCAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000098782.4 ENSMUST00000217212.2 |
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| CDS GCA 72 bp | GGGCTGTTTTCTTGGCGAGGAGTGGGCCAAATGGTGTaGTGCTCCTTTGTGCTAGGGTCTGTCTGTTCTCGT | + |
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Preference number: 6 (lower is better) Translates to: GLFSWRGVGQMV*CSFVLGSVCSR Trigger: ACGAGAACAGACAGACCCTAGCACAAAGGAGCAGCACACCATTTGGCCCACTCCTCGCCAAGAAAACAGCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098782.4 ENSMUST00000217212.2 |
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| CDS GCA 72 bp | CTGTTTTCTTGGCGAGGAGTGGGCCAAATGGTGTGCTaGTCCTTTGTGCTAGGGTCTGTCTGTTCTCGTTTT | + |
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Preference number: 6 (lower is better) Translates to: LFSWRGVGQMVC*SFVLGSVCSRF Trigger: AAAACGAGAACAGACAGACCCTAGCACAAAGGAGCAGCACACCATTTGGCCCACTCCTCGCCAAGAAAACAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098782.4 ENSMUST00000217212.2 |
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| CDS TCA 72 bp | TTTCTATCAACCTCTGCTCATCCTCTGTCTCAATGCTaGCGAGCTGTCCCCCATCCTCCATGCAGGTTTCTT | + |
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Preference number: 6 (lower is better) Translates to: FLSTSAHPLSQC*RAVPHPPCRFL Trigger: AAGAAACCTGCATGGAGGATGGGGGACAGCTCGTCAGCATTGAGACAGAGGATGAGCAGAGGTTGATAGAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000098782.4 ENSMUST00000214993.2 ENSMUST00000217212.2 |
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| CDS GCA 72 bp | ATAGATGTCATTGGTCACAAATCCACTCTCCATACTTaGCAAAGTCACAAACCCACTTTCCGAAGGGTTCAC | + |
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Preference number: 6 (lower is better) Translates to: IDVIGHKSTLHT*QSHKPTFRRVH Trigger: GTGAACCCTTCGGAAAGTGGGTTTGTGACTTTGGCAAGTATGGAGAGTGGATTTGTGACCAATGACATCTAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098782.4 |
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