RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LATS2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021959

Ensembl transcript IDs: ENSMUST00000022531.14, ENSMUST00000038381.14, ENSMUST00000077981.7, ENSMUST00000173990.8, ENSMUST00000174166.2, ENSMUST00000174213.8

Found 436 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CCAGCTGGTGGTAGGATGGGAGTGCTTCCCCTGTGCCCTCGAAACTaGGCCGCCGAGTCACCGGGGTGGGCGCCAGGCCCTTTCCTGGGG +
Preference number: 1 (lower is better)
Translates to: PAGGRMGVLPLCPRN*AAESPGWAPGPFLG
Trigger: CCCCAGGAAAGGGCCTGGCGCCCACCCCGGTGACTCGGCGGCCCAGTTTCGAGGGCACAGGGGAAGCACTCCCATCCTACCACCAGCTGG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR CCA 90 bp GGGGTAGCCGCCGGCTTGTGGTGCGAGGCAGTGTACAGCCCAGCATaGGCAGGAAAGGTGAGGCTGGCGGGAGGGCCACCCTGGGCCTTG +
Preference number: 1 (lower is better)
Translates to: GVAAGLWCEAVYSPA*AGKVRLAGGPPWAL
Trigger: CAAGGCCCAGGGTGGCCCTCCCGCCAGCCTCACCTTTCCTGCCCATGCTGGGCTGTACACTGCCTCGCACCACAAGCCGGCGGCTACCCC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR GCA 90 bp AGTTTGCACCACCCAGCTGGTGGTAGGATGGGAGTGCTTCCCCTGTaGCCTCGAAACTGGGCCGCCGAGTCACCGGGGTGGGCGCCAGGC +
Preference number: 1 (lower is better)
Translates to: SLHHPAGGRMGVLPL*PRNWAAESPGWAPG
Trigger: GCCTGGCGCCCACCCCGGTGACTCGGCGGCCCAGTTTCGAGGGCACAGGGGAAGCACTCCCATCCTACCACCAGCTGGGTGGTGCAAACT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR GCA 90 bp CCTGCGCTCGGAGCCGCCATAGTCCACATCCAGCGGGTGTGGGCCTaGGCTGCCCTCCTTCGTCTCCAGGCTCTCAGTGGCAGGTGCTGT +
Preference number: 1 (lower is better)
Translates to: PALGAAIVHIQRVWA*AALLRLQALSGRCC
Trigger: ACAGCACCTGCCACTGAGAGCCTGGAGACGAAGGAGGGCAGCGCAGGCCCACACCCGCTGGATGTGGACTATGGCGGCTCCGAGCGCAGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR GCA 90 bp CTGACCACCGAGCTGGTCATTACAGCCACAGGGATGATGGTGCTCTaGAGGGCAGGCGAGCGAGGCAGGGGGCTGACGGCAGCTGCCGCT +
Preference number: 1 (lower is better)
Translates to: LTTELVITATGMMVL*RAGERGRGLTAAAA
Trigger: AGCGGCAGCTGCCGTCAGCCCCCTGCCTCGCTCGCCTGCCCTGCAGAGCACCATCATCCCTGTGGCTGTAATGACCAGCTCGGTGGTCAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
3UTR CCA 90 bp TGCGGCGGGGCCCTCGTAGTTTGCACCACCCAGCTGGTGGTAGGATaGGAGTGCTTCCCCTGTGCCCTCGAAACTGGGCCGCCGAGTCAC +
Preference number: 1 (lower is better)
Translates to: CGGALVVCTTQLVVG*ECFPCALETGPPSH
Trigger: GTGACTCGGCGGCCCAGTTTCGAGGGCACAGGGGAAGCACTCCCATCCTACCACCAGCTGGGTGGTGCAAACTACGAGGGCCCCGCCGCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR CCA 90 bp GCTCTGGATGCTTGCTGCTGGGGGAGGCCAGCGTGTCCCAGGCCTTaGCGCTCTCTCCGCTGGCCTCGTGCCAGGGGCTTTCTTCATCCA +
Preference number: 1 (lower is better)
Translates to: ALDACCWGRPACPRP*RSLRWPRARGFLHP
Trigger: TGGATGAAGAAAGCCCCTGGCACGAGGCCAGCGGAGAGAGCGCCAAGGCCTGGGACACGCTGGCCTCCCCCAGCAGCAAGCATCCAGAGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR TCA 90 bp GCTTGTGGTGCGAGGCAGTGTACAGCCCAGCATGGGCAGGAAAGGTaGGGCTGGCGGGAGGGCCACCCTGGGCCTTGGCCATGCTGGAAT +
Preference number: 1 (lower is better)
Translates to: ACGARQCTAQHGQER*GWREGHPGPWPCWN
Trigger: ATTCCAGCATGGCCAAGGCCCAGGGTGGCCCTCCCGCCAGCCTCACCTTTCCTGCCCATGCTGGGCTGTACACTGCCTCGCACCACAAGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR GCA 90 bp ATATTGCCGCGGCATCTCCTCCAGTGCGGCGGGGCCCTCGTAGTTTaGACCACCCAGCTGGTGGTAGGATGGGAGTGCTTCCCCTGTGCC +
Preference number: 1 (lower is better)
Translates to: ILPRHLLQCGGALVV*TTQLVVGWECFPCA
Trigger: GGCACAGGGGAAGCACTCCCATCCTACCACCAGCTGGGTGGTGCAAACTACGAGGGCCCCGCCGCACTGGAGGAGATGCCGCGGCAATAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR GCA 90 bp ACATGTAATGGGTGGGCCCCAGGTGGGGTAGCCGCCGGCTTGTGGTaGGAGGCAGTGTACAGCCCAGCATGGGCAGGAAAGGTGAGGCTG +
Preference number: 1 (lower is better)
Translates to: TCNGWAPGGVAAGLW*EAVYSPAWAGKVRL
Trigger: CAGCCTCACCTTTCCTGCCCATGCTGGGCTGTACACTGCCTCGCACCACAAGCCGGCGGCTACCCCACCTGGGGCCCACCCATTACATGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR GCA 90 bp GAGGCCAGCGTGTCCCAGGCCTTGGCGCTCTCTCCGCTGGCCTCGTaGCAGGGGCTTTCTTCATCCACCGGGTCAAAATTGGAGGTGTCC +
Preference number: 1 (lower is better)
Translates to: EASVSQALALSPLAS*QGLSSSTGSKLEVS
Trigger: GGACACCTCCAATTTTGACCCGGTGGATGAAGAAAGCCCCTGGCACGAGGCCAGCGGAGAGAGCGCCAAGGCCTGGGACACGCTGGCCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR CCA 90 bp GAAACTGGGCCGCCGAGTCACCGGGGTGGGCGCCAGGCCCTTTCCTaGGGAGGTCTGCTTGATGACTCGCACAATCTGCTCATTCCTGGG +
Preference number: 1 (lower is better)
Translates to: ETGPPSHRGGRQALS*GGLLDDSHNLLIPG
Trigger: CCCAGGAATGAGCAGATTGTGCGAGTCATCAAGCAGACCTCCCCAGGAAAGGGCCTGGCGCCCACCCCGGTGACTCGGCGGCCCAGTTTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR GCA 90 bp TTGTTGAAGGAGTTGGTCCTGCTGGGGCCAGCCCGAAAAGCCACATaGGGCCGCGAGGCTTCTAGACCCTGCTTCTGCAGCGAGTCGCGG +
Preference number: 1 (lower is better)
Translates to: LLKELVLLGPARKAT*GREASRPCFCSESR
Trigger: CCGCGACTCGCTGCAGAAGCAGGGTCTAGAAGCCTCGCGGCCGCATGTGGCTTTTCGGGCTGGCCCCAGCAGGACCAACTCCTTCAACAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR CCA 90 bp GGGAGGGCCACCCTGGGCCTTGGCCATGCTGGAATAGGCATCTGGTaGCGTCTTGTTCTGGAAGGAGGAACTGCGCTGCACCCCATACCC +
Preference number: 1 (lower is better)
Translates to: GRATLGLGHAGIGIW*RLVLEGGTALHPIP
Trigger: GGGTATGGGGTGCAGCGCAGTTCCTCCTTCCAGAACAAGACGCCACCAGATGCCTATTCCAGCATGGCCAAGGCCCAGGGTGGCCCTCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR CCA 90 bp GGCGGGAGGGCCACCCTGGGCCTTGGCCATGCTGGAATAGGCATCTaGTGGCGTCTTGTTCTGGAAGGAGGAACTGCGCTGCACCCCATA +
Preference number: 1 (lower is better)
Translates to: GGRATLGLGHAGIGI*WRLVLEGGTALHPI
Trigger: TATGGGGTGCAGCGCAGTTCCTCCTTCCAGAACAAGACGCCACCAGATGCCTATTCCAGCATGGCCAAGGCCCAGGGTGGCCCTCCCGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR CCA 90 bp TGGTGCACAGGCTGTCCAGGTCCACGCTGTACTGCTCAGACTTACTaGGCAGCAGCAAGTGCTTTGGGTACGGAGGCGGTGGGCACCTGC +
Preference number: 1 (lower is better)
Translates to: WCTGCPGPRCTAQTY*AAASALGTEAVGTC
Trigger: GCAGGTGCCCACCGCCTCCGTACCCAAAGCACTTGCTGCTGCCCAGTAAGTCTGAGCAGTACAGCGTGGACCTGGACAGCCTGTGCACCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR TCA 90 bp CTGCAGACCAGGGCACCGTGGAGCCCAGCTCGTACAAGTCAGCATTaGGGCTGTTCCTGGACGGTGCCAGCACAGCCTGTGCAGAGCTTT +
Preference number: 1 (lower is better)
Translates to: LQTRAPWSPARTSQH*GCSWTVPAQPVQSF
Trigger: AAAGCTCTGCACAGGCTGTGCTGGCACCGTCCAGGAACAGCCTCAATGCTGACTTGTACGAGCTGGGCTCCACGGTGCCCTGGTCTGCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR GCA 90 bp GACCATAGTGTGTGCCCGGAAAGTGCGCACTTGGCTCTACTGCTGTaGTGTACCCTTTGGGAGGATGCTGGTGAGCCTGGGCACCGTGGG +
Preference number: 1 (lower is better)
Translates to: DHSVCPESAHLALLL*CTLWEDAGEPGHRG
Trigger: CCCACGGTGCCCAGGCTCACCAGCATCCTCCCAAAGGGTACAGCACAGCAGTAGAGCCAAGTGCGCACTTTCCGGGCACACACTATGGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR GCA 90 bp CAAGTCAGCATTGAGGCTGTTCCTGGACGGTGCCAGCACAGCCTGTaGAGAGCTTTCGCCAGTAAACGTGGGACCCCGGGTGCCCAACAC +
Preference number: 1 (lower is better)
Translates to: QVSIEAVPGRCQHSL*RAFASKRGTPGAQH
Trigger: GTGTTGGGCACCCGGGGTCCCACGTTTACTGGCGAAAGCTCTGCACAGGCTGTGCTGGCACCGTCCAGGAACAGCCTCAATGCTGACTTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR GCA 90 bp GGAAAAGTCGATGGTGTTGAAGAACGGGTGTGCCTTGAGGTCATCTaGCCCATCCCTGCCCAGGCGGCAGTCAGCCGCGCAGCACAGCTT +
Preference number: 1 (lower is better)
Translates to: GKVDGVEERVCLEVI*PIPAQAAVSRAAQL
Trigger: AAGCTGTGCTGCGCGGCTGACTGCCGCCTGGGCAGGGATGGGGCAGATGACCTCAAGGCACACCCGTTCTTCAACACCATCGACTTTTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR CCA 90 bp GTCATCGAAGAACCTGCGGAAGGTGAACTCATAGAAGGCGTGCTCTaGATGCTTGCTGCTGGGGGAGGCCAGCGTGTCCCAGGCCTTGGC +
Preference number: 1 (lower is better)
Translates to: VIEEPAEGELIEGVL*MLAAGGGQRVPGLG
Trigger: GCCAAGGCCTGGGACACGCTGGCCTCCCCCAGCAGCAAGCATCCAGAGCACGCCTTCTATGAGTTCACCTTCCGCAGGTTCTTCGATGAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR GCA 90 bp GGCGAGCGAGGCAGGGGGCTGACGGCAGCTGCCGCTGCATCTCACTaGGTGTTATTCTTGCTTGGAAATAACAAGAGGGCGAGAGAGAGC +
Preference number: 1 (lower is better)
Translates to: GERGRGLTAAAAASH*VLFLLGNNKRARES
Trigger: GCTCTCTCTCGCCCTCTTGTTATTTCCAAGCAAGAATAACACGCAGTGAGATGCAGCGGCAGCTGCCGTCAGCCCCCTGCCTCGCTCGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
3UTR GCA 90 bp TCCTGTCTTGCTCAGTGCCCCCTCGCAGACTCTGCTGCACACTGGTaGACAGGCTGTCCAGGTCCACGCTGTACTGCTCAGACTTACTGG +
Preference number: 1 (lower is better)
Translates to: SCLAQCPLADSAAHW*TGCPGPRCTAQTYW
Trigger: CCAGTAAGTCTGAGCAGTACAGCGTGGACCTGGACAGCCTGTGCACCAGTGTGCAGCAGAGTCTGCGAGGGGGCACTGAGCAAGACAGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR GCA 90 bp ATGAGGTCTCGGGCCTCAGCGCTGAGCCTCACCTGCGTAGGGATATaGAGCGTGCTCTCCCAGTTGATCACCTTCAGCTGCGTCTCTGTG +
Preference number: 1 (lower is better)
Translates to: MRSRASALSLTCVGI*SVLSQLITFSCVSV
Trigger: CACAGAGACGCAGCTGAAGGTGATCAACTGGGAGAGCACGCTGCATATCCCTACGCAGGTGAGGCTCAGCGCTGAGGCCCGAGACCTCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR CCA 90 bp CACTCCTGTCTTGCTCAGTGCCCCCTCGCAGACTCTGCTGCACACTaGTGCACAGGCTGTCCAGGTCCACGCTGTACTGCTCAGACTTAC +
Preference number: 1 (lower is better)
Translates to: HSCLAQCPLADSAAH*CTGCPGPRCTAQTY
Trigger: GTAAGTCTGAGCAGTACAGCGTGGACCTGGACAGCCTGTGCACCAGTGTGCAGCAGAGTCTGCGAGGGGGCACTGAGCAAGACAGGAGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR CCA 90 bp GCGCCCTCTGCTCCAGGGTCTTTAACCTGTCTCCACAGCGACAGTTaGAAACATCGTCCCAGAGGTCACCGGGCTCCATGCTGTCCTGTC +
Preference number: 1 (lower is better)
Translates to: APSAPGSLTCLHSDS*KHRPRGHRAPCCPV
Trigger: GACAGGACAGCATGGAGCCCGGTGACCTCTGGGACGATGTTTCCAACTGTCGCTGTGGAGACAGGTTAAAGACCCTGGAGCAGAGGGCGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR GCA 90 bp CTTTCGGATGTCACGGGAAAAGTCGATGGTGTTGAAGAACGGGTGTaGCTTGAGGTCATCTGCCCCATCCCTGCCCAGGCGGCAGTCAGC +
Preference number: 1 (lower is better)
Translates to: LSDVTGKVDGVEERV*LEVICPIPAQAAVS
Trigger: GCTGACTGCCGCCTGGGCAGGGATGGGGCAGATGACCTCAAGGCACACCCGTTCTTCAACACCATCGACTTTTCCCGTGACATCCGAAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR CCA 90 bp GATACTCCTACTGCCCGTCTGCTTGAGCGCTCTGCCAGCCATCTCTaGCTCATTCCAGCTGGGGGAGGCTACTGCTGCTTGCTGAACATT +
Preference number: 1 (lower is better)
Translates to: DTPTARLLERSASHL*LIPAGGGYCCLLNI
Trigger: AATGTTCAGCAAGCAGCAGTAGCCTCCCCCAGCTGGAATGAGCCAGAGATGGCTGGCAGAGCGCTCAAGCAGACGGGCAGTAGGAGTATC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR GCA 90 bp TTACTGATGTACTCCAAGGCAGCTTCGATACTCCTACTGCCCGTCTaGTTGAGCGCTCTGCCAGCCATCTCTGGCTCATTCCAGCTGGGG +
Preference number: 1 (lower is better)
Translates to: LLMYSKAASILLLPV*LSALPAISGSFQLG
Trigger: CCCCAGCTGGAATGAGCCAGAGATGGCTGGCAGAGCGCTCAAGCAGACGGGCAGTAGGAGTATCGAAGCTGCCTTGGAGTACATCAGTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR GCA 90 bp TGCTGGAATAGGCATCTGGTGGCGTCTTGTTCTGGAAGGAGGAACTaGGCTGCACCCCATACCCAGGCTGCTCCGATAGTAGATGACCAC +
Preference number: 1 (lower is better)
Translates to: CWNRHLVASCSGRRN*AAPHTQAAPIVDDH
Trigger: GTGGTCATCTACTATCGGAGCAGCCTGGGTATGGGGTGCAGCGCAGTTCCTCCTTCCAGAACAAGACGCCACCAGATGCCTATTCCAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR GCA 90 bp GAATCACACCGACGCTCCACCAGTCACAGAGCTGCGTGTACCCTTTaGGGAGAAGCACCTCCGGAGCGATGTAATTTGGTGTCCCGACAA +
Preference number: 1 (lower is better)
Translates to: ESHRRSTSHRAACTL*GEAPPERCNLVSRQ
Trigger: TTGTCGGGACACCAAATTACATCGCTCCGGAGGTGCTTCTCCGCAAAGGGTACACGCAGCTCTGTGACTGGTGGAGCGTCGGTGTGATTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR CCA 90 bp AGAAGGCTGGAGGCAAAGAGAGAAGGCAGCAGCCACAAAGCTTCCTaGAGCGGCCTCGAAGACACTAAAGAGACAGCTGACGAGGGGTTC +
Preference number: 1 (lower is better)
Translates to: RRLEAKREGSSHKAS*SGLEDTKETADEGF
Trigger: GAACCCCTCGTCAGCTGTCTCTTTAGTGTCTTCGAGGCCGCTCCAGGAAGCTTTGTGGCTGCTGCCTTCTCTCTTTGCCTCCAGCCTTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR CCA 90 bp CTGCGTGTACCCTTTGCGGAGAAGCACCTCCGGAGCGATGTAATTTaGTGTCCCGACAAGAGAATGTGCCAGGCACCTCTGGTGCTGCTT +
Preference number: 1 (lower is better)
Translates to: LRVPFAEKHLRSDVI*CPDKRMCQAPLVLL
Trigger: AAGCAGCACCAGAGGTGCCTGGCACATTCTCTTGTCGGGACACCAAATTACATCGCTCCGGAGGTGCTTCTCCGCAAAGGGTACACGCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR TCA 90 bp CTCGCACAATCTGCTCATTCCTGGGGTCCAGGTAGCCCATCTTACTaGTGTACTCCAAGGCAGCTTCGATACTCCTACTGCCCGTCTGCT +
Preference number: 1 (lower is better)
Translates to: LAQSAHSWGPGSPSY*CTPRQLRYSYCPSA
Trigger: AGCAGACGGGCAGTAGGAGTATCGAAGCTGCCTTGGAGTACATCAGTAAGATGGGCTACCTGGACCCCAGGAATGAGCAGATTGTGCGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR TCA 90 bp TTCAGGACATCCTTCTTCCTGAGAGTCTTCATGGCGTACAGAGCGTaGGTGTCCAGCTTACAAGCGAGGCACACTTCCCCAAAGGCACCG +
Preference number: 1 (lower is better)
Translates to: FRTSFFLRVFMAYRA*VSSLQARHTSPKAP
Trigger: CGGTGCCTTTGGGGAAGTGTGCCTCGCTTGTAAGCTGGACACTCACGCTCTGTACGCCATGAAGACTCTCAGGAAGAAGGATGTCCTGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR GCA 90 bp GAGCAGAGCTCCGTCGCCTCATCCTCTCTTATTGCACAGACGTCTTaGCTCACGCTCTCCAGCTCTTCCTTTTCTAGCTGTGGACAAGTG +
Preference number: 1 (lower is better)
Translates to: EQSSVASSSLIAQTS*LTLSSSSFSSCGQV
Trigger: CACTTGTCCACAGCTAGAAAAGGAAGAGCTGGAGAGCGTGAGGCAAGACGTCTGTGCAATAAGAGAGGATGAGGCGACGGAGCTCTGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
3UTR CCA 90 bp ATCTGCTTTTTGTCTCTGCCAGCTTTGTCTCCCTTCGCACCTTTGTaGCTCTTGTCACTCCTGTCTTGCTCAGTGCCCCCTCGCAGACTC +
Preference number: 1 (lower is better)
Translates to: ICFLSLPALSPFAPL*LLSLLSCSVPPRRL
Trigger: GAGTCTGCGAGGGGGCACTGAGCAAGACAGGAGTGACAAGAGCCACAAAGGTGCGAAGGGAGACAAAGCTGGCAGAGACAAAAAGCAGAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR GCA 90 bp GATAAAGCCCATCTTGTGGACACTTTCAATGGCCAGGGTCAACTCTaGAATGTAGAAGCGGGCCAGGTGCTCAGGGAAGACCTCCATCCT +
Preference number: 1 (lower is better)
Translates to: DKAHLVDTFNGQGQL*NVEAGQVLREDLHP
Trigger: AGGATGGAGGTCTTCCCTGAGCACCTGGCCCGCTTCTACATTGCAGAGTTGACCCTGGCCATTGAAAGTGTCCACAAGATGGGCTTTATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR GCA 90 bp CACAGCGACAGTTGGAAACATCGTCCCAGAGGTCACCGGGCTCCATaGTGTCCTGTCTCATGTGGTTCCCTTTCTGGTAGTACTTGGAAT +
Preference number: 1 (lower is better)
Translates to: HSDSWKHRPRGHRAP*CPVSCGSLSGSTWN
Trigger: ATTCCAAGTACTACCAGAAAGGGAACCACATGAGACAGGACAGCATGGAGCCCGGTGACCTCTGGGACGATGTTTCCAACTGTCGCTGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR TCA 90 bp TTCTCTTCATCTCTGCTATTCTTGCGGACAGGCACCGGGGAGGTCTaGATCTGCTTTTTGTCTCTGCCAGCTTTGTCTCCCTTCGCACCT +
Preference number: 1 (lower is better)
Translates to: FSSSLLFLRTGTGEV*ICFLSLPALSPFAP
Trigger: AGGTGCGAAGGGAGACAAAGCTGGCAGAGACAAAAAGCAGATTCAGACCTCCCCGGTGCCTGTCCGCAAGAATAGCAGAGATGAAGAGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR TCA 90 bp TCTGAAAAGAAATCTCATTTTGGGTTTCCTCGAGTTGTGGTTAACTaGGGCTTACACGTACACCGGCTGGCAGCCCTCGGCCGCACCTTC +
Preference number: 1 (lower is better)
Translates to: SEKKSHFGFPRVVVN*GLHVHRLAALGRTF
Trigger: GAAGGTGCGGCCGAGGGCTGCCAGCCGGTGTACGTGTAAGCCTCAGTTAACCACAACTCGAGGAAACCCAAAATGAGATTTCTTTTCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR GCA 90 bp CGCTCTGCCAGCCATCTCTGGCTCATTCCAGCTGGGGGAGGCTACTaGTGCTTGCTGAACATTTCCAAAGTAAATCAGAAAACCAGGAAG +
Preference number: 1 (lower is better)
Translates to: RSASHLWLIPAGGGY*CLLNISKVNQKTRK
Trigger: CTTCCTGGTTTTCTGATTTACTTTGGAAATGTTCAGCAAGCAGCAGTAGCCTCCCCCAGCTGGAATGAGCCAGAGATGGCTGGCAGAGCG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR GCA 90 bp TGTGAATGGCAAGATACGGTATTTTATACTAGAAACCCCTGCTCATaGAGTACTCTCCACACCAGACACCGGAGTCACACCCACCAGCTC +
Preference number: 1 (lower is better)
Translates to: CEWQDTVFYTRNPCS*STLHTRHRSHTHQL
Trigger: GAGCTGGTGGGTGTGACTCCGGTGTCTGGTGTGGAGAGTACTGCATGAGCAGGGGTTTCTAGTATAAAATACCGTATCTTGCCATTCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
3UTR GCA 90 bp TCTGCCAGCCATCTCTGGCTCATTCCAGCTGGGGGAGGCTACTGCTaGTTGCTGAACATTTCCAAAGTAAATCAGAAAACCAGGAAGCAA +
Preference number: 1 (lower is better)
Translates to: SASHLWLIPAGGGYC*LLNISKVNQKTRKQ
Trigger: TTGCTTCCTGGTTTTCTGATTTACTTTGGAAATGTTCAGCAAGCAGCAGTAGCCTCCCCCAGCTGGAATGAGCCAGAGATGGCTGGCAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR CCA 90 bp TCTCATGTGAAAGAGGCCCAAAGAACTGGGTTTCACAGAACCTCCTaGTTGGCTGAGAACACAGGAAGCAGGACCCTTACATCACCTATG +
Preference number: 1 (lower is better)
Translates to: SHVKEAQRTGFHRTS*LAENTGSRTLTSPM
Trigger: CATAGGTGATGTAAGGGTCCTGCTTCCTGTGTTCTCAGCCAACCAGGAGGTTCTGTGAAACCCAGTTCTTTGGGCCTCTTTCACATGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
3UTR CCA 90 bp GTTTGTCTTCTGAAAAGAAATCTCATTTTGGGTTTCCTCGAGTTGTaGTTAACTGAGGCTTACACGTACACCGGCTGGCAGCCCTCGGCC +
Preference number: 1 (lower is better)
Translates to: VCLLKRNLILGFLEL*LTEAYTYTGWQPSA
Trigger: GGCCGAGGGCTGCCAGCCGGTGTACGTGTAAGCCTCAGTTAACCACAACTCGAGGAAACCCAAAATGAGATTTCTTTTCAGAAGACAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR GCA 90 bp CAGTACTCTCCACACCAGACACCGGAGTCACACCCACCAGCTCTCTaGTCACTCTTTCTAGGAACTATAATATGCAAAGGAGAAAATACA +
Preference number: 1 (lower is better)
Translates to: QYSPHQTPESHPPAL*SLFLGTIICKGENT
Trigger: TGTATTTTCTCCTTTGCATATTATAGTTCCTAGAAAGAGTGAGCAGAGAGCTGGTGGGTGTGACTCCGGTGTCTGGTGTGGAGAGTACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
3UTR-3UTR CCA 90 bp GCAGCACACGCACGCTCTTCACAGGGTGAAGGATGTGTGCGGCCGTCACGGCGGGCCGAGTCACCGGGGTaGGCGCCAGGCCCTTTCCTG +
Preference number: 2 (lower is better)
Translates to: AAHARSSQGEGCVRPSRRAESPG*APGPFL
Trigger: CAGGAAAGGGCCTGGCGCCCACCCCGGTGACTCGGC...CCGCCGTGACGGCCGCACACATCCTTCACCCTGTGAAGAGCGTGCGTGTGCTGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR-3UTR GCA 90 bp CTGCACTCTCTGCGGGCTCTGAGGGCTTCGGGCACCGGAAGGGATAGCCGTTGTCAGCGAGTCGCGGCGTaGCAGTGGAGCTGCAGACCA +
Preference number: 2 (lower is better)
Translates to: LHSLRALRASGTGRDSRCQRVAA*QWSCRP
Trigger: TGGTCTGCAGCTCCACTGGCACGCCGCGACTCGCTG...ACAACGGCTATCCCTTCCGGTGCCCGAAGCCCTCAGAGCCCGCAGAGAGTGCAG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR-3UTR TCA 90 bp CACAGAGCTGCGTGTACCCTTTGCGGAGAAGCACCTCCGGAGCGATGTAATTTGCGGCCGTCACGGCGGTaGCCGTGTTGGGGGCGGGCA +
Preference number: 2 (lower is better)
Translates to: HRAACTLCGEAPPERCNLRPSRR*PCWGRA
Trigger: TGCCCGCCCCCAACACGGTCACCGCCGTGACGGCCG...CAAATTACATCGCTCCGGAGGTGCTTCTCCGCAAAGGGTACACGCAGCTCTGTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR CAA 90 bp GCTGCAGACCAGGGCACCGTGGAGCCCAGCTCGTACAAGTCAGCATaGAGGCTGTTCCTGGACGGTGCCAGCACAGCCTGTGCAGAGCTT +
Preference number: 2 (lower is better)
Translates to: AADQGTVEPSSYKSA*RLFLDGASTACAEL
Trigger: AAGCTCTGCACAGGCTGTGCTGGCACCGTCCAGGAACAGCCTCAATGCTGACTTGTACGAGCTGGGCTCCACGGTGCCCTGGTCTGCAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR CAA 90 bp CGGATGTCACGGGAAAAGTCGATGGTGTTGAAGAACGGGTGTGCCTaGAGGTCATCTGCCCCATCCCTGCCCAGGCGGCAGTCAGCCGCG +
Preference number: 2 (lower is better)
Translates to: RMSREKSMVLKNGCA*RSSAPSLPRRQSAA
Trigger: CGCGGCTGACTGCCGCCTGGGCAGGGATGGGGCAGATGACCTCAAGGCACACCCGTTCTTCAACACCATCGACTTTTCCCGTGACATCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR-3UTR GCA 90 bp GCACCTTTGTGGCTCTTGTCACTCCTGTCTTGCTCAGTGCCCCCTCGCAGACTCCGGCATCTCCTCCAGTaGGGCGGGGCCCTCGTAGTT +
Preference number: 2 (lower is better)
Translates to: APLWLLSLLSCSVPPRRLRHLLQ*GGALVV
Trigger: AACTACGAGGGCCCCGCCGCACTGGAGGAGATGCCG...GAGTCTGCGAGGGGGCACTGAGCAAGACAGGAGTGACAAGAGCCACAAAGGTGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR-3UTR GCA 90 bp CTTCGGGCACCGGAAGGGATAGCCGTTGTCATCGAAGAACCTGCGGAAGGTGAACATCTGCCCCATCCCTaGCCAGGCGGCAGTCAGCCG +
Preference number: 2 (lower is better)
Translates to: LRAPEGIAVVIEEPAEGEHLPHP*PGGSQP
Trigger: CGGCTGACTGCCGCCTGGGCAGGGATGGGGCAGATG...TTCACCTTCCGCAGGTTCTTCGATGACAACGGCTATCCCTTCCGGTGCCCGAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR-3UTR CCA 90 bp CTTCGGGCACCGGAAGGGATAGCCGTTGTCATCGAAGAACCTGCGGAAGGTGAAGCGGGAGGGCCACCCTaGGCCTTGGCCATGCTGGAA +
Preference number: 2 (lower is better)
Translates to: LRAPEGIAVVIEEPAEGEAGGPP*ALAMLE
Trigger: TTCCAGCATGGCCAAGGCCCAGGGTGGCCCTCCCGC...TTCACCTTCCGCAGGTTCTTCGATGACAACGGCTATCCCTTCCGGTGCCCGAAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR CAA 90 bp GCGCTGAGCCTCACCTGCGTAGGGATATGCAGCGTGCTCTCCCAGTaGATCACCTTCAGCTGCGTCTCTGTGGGGGTGGGGGCCAAGAAA +
Preference number: 2 (lower is better)
Translates to: ALSLTCVGICSVLSQ*ITFSCVSVGVGAKK
Trigger: TTTCTTGGCCCCCACCCCCACAGAGACGCAGCTGAAGGTGATCAACTGGGAGAGCACGCTGCATATCCCTACGCAGGTGAGGCTCAGCGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR-3UTR CCA 90 bp CTGCACTCTCTGCGGGCTCTGAGGGCTTCGGGCACCGGAAGGGATAGCCGTTGTAGCCACAAAGCTTCCTaGAGCGGCCTCGAAGACACT +
Preference number: 2 (lower is better)
Translates to: LHSLRALRASGTGRDSRCSHKAS*SGLEDT
Trigger: AGTGTCTTCGAGGCCGCTCCAGGAAGCTTTGTGGCT...ACAACGGCTATCCCTTCCGGTGCCCGAAGCCCTCAGAGCCCGCAGAGAGTGCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR-3UTR TCA 90 bp CATACCCAGGCTGCTCCGATAGTAGATGACCACGACCATAGTGTGTGCCCGGAATTGGGAGGATGCTGGTaGGCCTGGGCACCGTGGGTG +
Preference number: 2 (lower is better)
Translates to: HTQAAPIVDDHDHSVCPELGGCW*AWAPWV
Trigger: CACCCACGGTGCCCAGGCTCACCAGCATCCTCCCAA...TTCCGGGCACACACTATGGTCGTGGTCATCTACTATCGGAGCAGCCTGGGTATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR-3UTR TCA 90 bp GCACCTTTGTGGCTCTTGTCACTCCTGTCTTGCTCAGTGCCCCCTCGCAGACTCACGCTCTTCACAGGGTaGAGGATGTGTGCGGCCGTC +
Preference number: 2 (lower is better)
Translates to: APLWLLSLLSCSVPPRRLTLFTG*RMCAAV
Trigger: GACGGCCGCACACATCCTTCACCCTGTGAAGAGCGT...GAGTCTGCGAGGGGGCACTGAGCAAGACAGGAGTGACAAGAGCCACAAAGGTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR-3UTR GCA 90 bp GTCTCCACAGCGACAGTTGGAAACATCGTCCCAGAGGTCACCGGGCTCCATGCTCCTCGCAGACTCTGCTaGACACTGGTGCACAGGCTG +
Preference number: 2 (lower is better)
Translates to: VSTATVGNIVPEVTGLHAPRRLC*TLVHRL
Trigger: CAGCCTGTGCACCAGTGTGCAGCAGAGTCTGCGAGG...AGCATGGAGCCCGGTGACCTCTGGGACGATGTTTCCAACTGTCGCTGTGGAGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR CAA 90 bp CTGATGTACTCCAAGGCAGCTTCGATACTCCTACTGCCCGTCTGCTaGAGCGCTCTGCCAGCCATCTCTGGCTCATTCCAGCTGGGGGAG +
Preference number: 2 (lower is better)
Translates to: LMYSKAASILLLPVC*SALPAISGSFQLGE
Trigger: CTCCCCCAGCTGGAATGAGCCAGAGATGGCTGGCAGAGCGCTCAAGCAGACGGGCAGTAGGAGTATCGAAGCTGCCTTGGAGTACATCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR CAA 90 bp TGCGCCCTCTGCTCCAGGGTCTTTAACCTGTCTCCACAGCGACAGTaGGAAACATCGTCCCAGAGGTCACCGGGCTCCATGCTGTCCTGT +
Preference number: 2 (lower is better)
Translates to: CALCSRVFNLSPQRQ*ETSSQRSPGSMLSC
Trigger: ACAGGACAGCATGGAGCCCGGTGACCTCTGGGACGATGTTTCCAACTGTCGCTGTGGAGACAGGTTAAAGACCCTGGAGCAGAGGGCGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR-3UTR TCA 90 bp AGTGAGGGCTCAGGTTGTGGGTTGTTGAAGGAGTTGGTCCTGCTGGGGCCAGCCCGTACAAGTCAGCATTaGGGCTGTTCCTGGACGGTG +
Preference number: 2 (lower is better)
Translates to: SEGSGCGLLKELVLLGPARTSQH*GCSWTV
Trigger: CACCGTCCAGGAACAGCCTCAATGCTGACTTGTACG...GGCTGGCCCCAGCAGGACCAACTCCTTCAACAACCCACAACCTGAGCCCTCACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR-3UTR CCA 90 bp CACAGAGCTGCGTGTACCCTTTGCGGAGAAGCACCTCCGGAGCGATGTAATTTGTCTCCAGGCTCTCAGTaGCAGGTGCTGTGGGCGCAG +
Preference number: 2 (lower is better)
Translates to: HRAACTLCGEAPPERCNLSPGSQ*QVLWAQ
Trigger: CTGCGCCCACAGCACCTGCCACTGAGAGCCTGGAGA...CAAATTACATCGCTCCGGAGGTGCTTCTCCGCAAAGGGTACACGCAGCTCTGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR-3UTR TCA 90 bp GTCTCCACAGCGACAGTTGGAAACATCGTCCCAGAGGTCACCGGGCTCCATGCTTGTCCCTCTCAGCCTTaGCATGGGCCACTTGATTCC +
Preference number: 2 (lower is better)
Translates to: VSTATVGNIVPEVTGLHACPSQP*HGPLDS
Trigger: GGAATCAAGTGGCCCATGTCAAGGCTGAGAGGGACA...AGCATGGAGCCCGGTGACCTCTGGGACGATGTTTCCAACTGTCGCTGTGGAGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR-3UTR GCA 90 bp GCATCTGGTGGCGTCTTGTTCTGGAAGGAGGAACTGCGCTGCACCCCATACCCAATGACTCGCACAATCTaGTCATTCCTGGGGTCCAGG +
Preference number: 2 (lower is better)
Translates to: ASGGVLFWKEELRCTPYPMTRTI*SFLGSR
Trigger: CCTGGACCCCAGGAATGAGCAGATTGTGCGAGTCAT...TGGGTATGGGGTGCAGCGCAGTTCCTCCTTCCAGAACAAGACGCCACCAGATGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR-3UTR GCA 90 bp CTTCGGGCACCGGAAGGGATAGCCGTTGTCATCGAAGAACCTGCGGAAGGTGAAAGGTCCACGCTGTACTaGTCAGACTTACTGGGCAGC +
Preference number: 2 (lower is better)
Translates to: LRAPEGIAVVIEEPAEGERSTLY*SDLLGS
Trigger: GCTGCCCAGTAAGTCTGAGCAGTACAGCGTGGACCT...TTCACCTTCCGCAGGTTCTTCGATGACAACGGCTATCCCTTCCGGTGCCCGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR-3UTR CCA 90 bp GGAGCCCAGCTCGTACAAGTCAGCATTGAGGCTGTTCCTGGACGGTGCCAGCACGCTGGAATAGGCATCTaGTGGCGTCTTGTTCTGGAA +
Preference number: 2 (lower is better)
Translates to: GAQLVQVSIEAVPGRCQHAGIGI*WRLVLE
Trigger: TTCCAGAACAAGACGCCACCAGATGCCTATTCCAGC...GTGCTGGCACCGTCCAGGAACAGCCTCAATGCTGACTTGTACGAGCTGGGCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR CAA 90 bp TTTTTGTCTCTGCCAGCTTTGTCTCCCTTCGCACCTTTGTGGCTCTaGTCACTCCTGTCTTGCTCAGTGCCCCCTCGCAGACTCTGCTGC +
Preference number: 2 (lower is better)
Translates to: FLSLPALSPFAPLWL*SLLSCSVPPRRLCC
Trigger: GCAGCAGAGTCTGCGAGGGGGCACTGAGCAAGACAGGAGTGACAAGAGCCACAAAGGTGCGAAGGGAGACAAAGCTGGCAGAGACAAAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR-3UTR GCA 90 bp GTCTCCACAGCGACAGTTGGAAACATCGTCCCAGAGGTCACCGGGCTCCATGCTGGGGGAGGCTACTGCTaGTTGCTGAACATTTCCAAA +
Preference number: 2 (lower is better)
Translates to: VSTATVGNIVPEVTGLHAGGGYC*LLNISK
Trigger: TTTGGAAATGTTCAGCAAGCAGCAGTAGCCTCCCCC...AGCATGGAGCCCGGTGACCTCTGGGACGATGTTTCCAACTGTCGCTGTGGAGAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR-3UTR CCA 90 bp CGGCTCCGGCTCCAGGGAAGAGAAAGTCTAAATATTGCCGCGGCATCTCCTCCAGGCAGAACAGAAGGCTaGAGGCAAAGAGAGAAGGCA +
Preference number: 2 (lower is better)
Translates to: RLRLQGRESLNIAAASPPGRTEG*RQREKA
Trigger: TGCCTTCTCTCTTTGCCTCCAGCCTTCTGTTCTGCC...TGGAGGAGATGCCGCGGCAATATTTAGACTTTCTCTTCCCTGGAGCCGGAGCCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR-3UTR CCA 90 bp CGGCTCCGGCTCCAGGGAAGAGAAAGTCTAAATATTGCCGCGGCATCTCCTCCACAATCTGCTCATTCCTaGGGTCCAGGTAGCCCATCT +
Preference number: 2 (lower is better)
Translates to: RLRLQGRESLNIAAASPPQSAHS*GPGSPS
Trigger: AGATGGGCTACCTGGACCCCAGGAATGAGCAGATTG...TGGAGGAGATGCCGCGGCAATATTTAGACTTTCTCTTCCCTGGAGCCGGAGCCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR-3UTR CCA 90 bp AAGCACCTCCGGAGCGATGTAATTTGGTGTCCCGACAAGAGAATGTGCCAGGCAGACTCTGCTGCACACTaGTGCACAGGCTGTCCAGGT +
Preference number: 2 (lower is better)
Translates to: KHLRSDVIWCPDKRMCQADSAAH*CTGCPG
Trigger: ACCTGGACAGCCTGTGCACCAGTGTGCAGCAGAGTC...TGCCTGGCACATTCTCTTGTCGGGACACCAAATTACATCGCTCCGGAGGTGCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR-3UTR TCA 90 bp ACCTCCCTAGGACTGTGCTTCTATAAATCCACTAACCAAAGAGTTCCGATTTCAAGCGAGGCAGGGGGCTaGCGGCAGCTGCCGCTGCAT +
Preference number: 2 (lower is better)
Translates to: TSLGLCFYKSTNQRVPISSEAGG*RQLPLH
Trigger: ATGCAGCGGCAGCTGCCGTCAGCCCCCTGCCTCGCT...TGAAATCGGAACTCTTTGGTTAGTGGATTTATAGAAGCACAGTCCTAGGGAGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
3UTR-3UTR TCA 90 bp AAGAAAGGCGGCTGCCCAACCAGCATCTCAAAGAGAATCACACCGACGCTCCACTTGACATGGGCCACTTaGTTCCGGTTCAGGACATCC +
Preference number: 2 (lower is better)
Translates to: KKGGCPTSISKRITPTLHLTWAT*FRFRTS
Trigger: GGATGTCCTGAACCGGAATCAAGTGGCCCATGTCAA...GTGGAGCGTCGGTGTGATTCTCTTTGAGATGCTGGTTGGGCAGCCGCCTTTCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR-3UTR TCA 90 bp TCTTGTGGACACTTTCAATGGCCAGGGTCAACTCTGCAATGTAGAAGCGGGCCACAGGTTGTGGGTTGTTaGAGGAGTTGGTCCTGCTGG +
Preference number: 2 (lower is better)
Translates to: SCGHFQWPGSTLQCRSGPQVVGC*RSWSCW
Trigger: CCAGCAGGACCAACTCCTTCAACAACCCACAACCTG...TGGCCCGCTTCTACATTGCAGAGTTGACCCTGGCCATTGAAAGTGTCCACAAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR-3UTR GCA 90 bp GTCTCCACAGCGACAGTTGGAAACATCGTCCCAGAGGTCACCGGGCTCCATGCTCACTCTGTTCTACTCTaGCACATTCTTGAGAACTCC +
Preference number: 2 (lower is better)
Translates to: VSTATVGNIVPEVTGLHAHSVLL*HILENS
Trigger: GGAGTTCTCAAGAATGTGGCAGAGTAGAACAGAGTG...AGCATGGAGCCCGGTGACCTCTGGGACGATGTTTCCAACTGTCGCTGTGGAGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR-3UTR TCA 90 bp GCACCTTTGTGGCTCTTGTCACTCCTGTCTTGCTCAGTGCCCCCTCGCAGACTCCTCAGAGGGCTAATTTaGAATCATGTTGACTCTTCC +
Preference number: 2 (lower is better)
Translates to: APLWLLSLLSCSVPPRRLLRGLI*NHVDSS
Trigger: GGAAGAGTCAACATGATTTCAAATTAGCCCTCTGAG...GAGTCTGCGAGGGGGCACTGAGCAAGACAGGAGTGACAAGAGCCACAAAGGTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR-3UTR GCA 90 bp ACCTCCCTAGGACTGTGCTTCTATAAATCCACTAACCAAAGAGTTCCGATTTCAGGGATGATGGTGCTCTaGAGGGCAGGCGAGCGAGGC +
Preference number: 2 (lower is better)
Translates to: TSLGLCFYKSTNQRVPISGMMVL*RAGERG
Trigger: GCCTCGCTCGCCTGCCCTGCAGAGCACCATCATCCC...TGAAATCGGAACTCTTTGGTTAGTGGATTTATAGAAGCACAGTCCTAGGGAGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
3UTR-3UTR GCA 90 bp AAGCACCTCCGGAGCGATGTAATTTGGTGTCCCGACAAGAGAATGTGCCAGGCATTGGCTCTACTGCTGTaGTGTACCCTTTGGGAGGAT +
Preference number: 2 (lower is better)
Translates to: KHLRSDVIWCPDKRMCQALALLL*CTLWED
Trigger: ATCCTCCCAAAGGGTACAGCACAGCAGTAGAGCCAA...TGCCTGGCACATTCTCTTGTCGGGACACCAAATTACATCGCTCCGGAGGTGCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR CAA 90 bp GCCAGCCATCTCTGGCTCATTCCAGCTGGGGGAGGCTACTGCTGCTaGCTGAACATTTCCAAAGTAAATCAGAAAACCAGGAAGCAACAG +
Preference number: 2 (lower is better)
Translates to: ASHLWLIPAGGGYCC*LNISKVNQKTRKQQ
Trigger: CTGTTGCTTCCTGGTTTTCTGATTTACTTTGGAAATGTTCAGCAAGCAGCAGTAGCCTCCCCCAGCTGGAATGAGCCAGAGATGGCTGGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR-3UTR TCA 90 bp CTCTGCCAGCCATCTCTGGCTCATTCCAGCTGGGGGAGGCTACTGCTGCTTGCTAATTTGAAATCATGTTaGCTCTTCCTGTTGCCCATT +
Preference number: 2 (lower is better)
Translates to: LCQPSLAHSSWGRLLLLANLKSC*LFLLPI
Trigger: AATGGGCAACAGGAAGAGTCAACATGATTTCAAATT...AGCAAGCAGCAGTAGCCTCCCCCAGCTGGAATGAGCCAGAGATGGCTGGCAGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR-3UTR TCA 90 bp AGTACTCTCCACACCAGACACCGGAGTCACACCCACCAGCTCTCTGCTCACTCTCTCAGAGGGCTAATTTaGAATCATGTTGACTCTTCC +
Preference number: 2 (lower is better)
Translates to: STLHTRHRSHTHQLSAHSLRGLI*NHVDSS
Trigger: GGAAGAGTCAACATGATTTCAAATTAGCCCTCTGAG...AGAGTGAGCAGAGAGCTGGTGGGTGTGACTCCGGTGTCTGGTGTGGAGAGTACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
3UTR-3UTR TCA 90 bp AAGCACCTCCGGAGCGATGTAATTTGGTGTCCCGACAAGAGAATGTGCCAGGCAACTCTGCCACATTCTTaGGAACTCCCAGATGTCACT +
Preference number: 2 (lower is better)
Translates to: KHLRSDVIWCPDKRMCQATLPHS*ELPDVT
Trigger: AGTGACATCTGGGAGTTCTCAAGAATGTGGCAGAGT...TGCCTGGCACATTCTCTTGTCGGGACACCAAATTACATCGCTCCGGAGGTGCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR-3UTR TCA 90 bp TCTTGTGGACACTTTCAATGGCCAGGGTCAACTCTGCAATGTAGAAGCGGGCCAGGTAGCCCATCTTACTaGTGTACTCCAAGGCAGCTT +
Preference number: 2 (lower is better)
Translates to: SCGHFQWPGSTLQCRSGPGSPSY*CTPRQL
Trigger: AAGCTGCCTTGGAGTACATCAGTAAGATGGGCTACC...TGGCCCGCTTCTACATTGCAGAGTTGACCCTGGCCATTGAAAGTGTCCACAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR-3UTR TCA 90 bp GGACCTGCTGTGAATGGCAAGATACGGTATTTTATACTAGAAACCCCTGCTCATGATAAGCGGTCCTCGTaGCTTGAGCAGAGCTCCGTC +
Preference number: 2 (lower is better)
Translates to: GPAVNGKIRYFILETPAHDKRSS*LEQSSV
Trigger: GACGGAGCTCTGCTCAAGTCACGAGGACCGCTTATC...ATGAGCAGGGGTTTCTAGTATAAAATACCGTATCTTGCCATTCACAGCAGGTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
3UTR-3UTR TCA 90 bp AAGCACCTCCGGAGCGATGTAATTTGGTGTCCCGACAAGAGAATGTGCCAGGCATCTGTCAGCTTAATATaGCCATCCAGGTCGATGAGT +
Preference number: 2 (lower is better)
Translates to: KHLRSDVIWCPDKRMCQASVSLI*PSRSMS
Trigger: ACTCATCGACCTGGATGGTCATATTAAGCTGACAGA...TGCCTGGCACATTCTCTTGTCGGGACACCAAATTACATCGCTCCGGAGGTGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR-3UTR GCA 90 bp CCCACAGCCACACCTGACAGCAGACAGGACTACGGAAATGGACAAAACGCTAGATATACTAGAAACCCCTaGTCATGCAGTACTCTCCAC +
Preference number: 2 (lower is better)
Translates to: PTATPDSRQDYGNGQNARYTRNP*SCSTLH
Trigger: GTGGAGAGTACTGCATGAGCAGGGGTTTCTAGTATA...TCTAGCGTTTTGTCCATTTCCGTAGTCCTGTCTGCTGTCAGGTGTGGCTGTGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
3UTR-3UTR CCA 90 bp ATCTGTCAGCTTAATATGACCATCCAGGTCGATGAGTATGTTGTCAGGCTTGATCGCCAGGCCCTTTCCTaGGGAGGTCTGCTTGATGAC +
Preference number: 2 (lower is better)
Translates to: ICQLNMTIQVDEYVVRLDRQALS*GGLLDD
Trigger: GTCATCAAGCAGACCTCCCCAGGAAAGGGCCTGGCG...ATCAAGCCTGACAACATACTCATCGACCTGGATGGTCATATTAAGCTGACAGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR-3UTR CCA 90 bp ATCTGTCAGCTTAATATGACCATCCAGGTCGATGAGTATGTTGTCAGGCTTGATAGGAGTTGGTCCTGCTaGGGCCAGCCCGAAAAGCCA +
Preference number: 2 (lower is better)
Translates to: ICQLNMTIQVDEYVVRLDRSWSC*GQPEKP
Trigger: TGGCTTTTCGGGCTGGCCCCAGCAGGACCAACTCCT...ATCAAGCCTGACAACATACTCATCGACCTGGATGGTCATATTAAGCTGACAGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR-3UTR GCA 90 bp TGCTGTCCTGTCTCATGTGGTTCCCTTTCTGGTAGTACTTGGAATTGTGAGTCCTTTCCTGGGGAGGTCTaGTTGATGACTCGCACAATC +
Preference number: 2 (lower is better)
Translates to: CCPVSCGSLSGSTWNCESFPGEV*LMTRTI
Trigger: GATTGTGCGAGTCATCAAGCAGACCTCCCCAGGAAA...GGACTCACAATTCCAAGTACTACCAGAAAGGGAACCACATGAGACAGGACAGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR-3UTR GCA 90 bp TCTTGTGGACACTTTCAATGGCCAGGGTCAACTCTGCAATGTAGAAGCGGGCCATCTTCTCTTCATCTCTaGTATTCTTGCGGACAGGCA +
Preference number: 2 (lower is better)
Translates to: SCGHFQWPGSTLQCRSGPSSLHL*YSCGQA
Trigger: TGCCTGTCCGCAAGAATAGCAGAGATGAAGAGAAGA...TGGCCCGCTTCTACATTGCAGAGTTGACCCTGGCCATTGAAAGTGTCCACAAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR-3UTR CCA 90 bp CCCACAGCCACACCTGACAGCAGACAGGACTACGGAAATGGACAAAACGCTAGAGAAATAACAGCAGCATaGTTTCTCACAGTCAGTCCT +
Preference number: 2 (lower is better)
Translates to: PTATPDSRQDYGNGQNAREITAA*FLTVSP
Trigger: AGGACTGACTGTGAGAAACCATGCTGCTGTTATTTC...TCTAGCGTTTTGTCCATTTCCGTAGTCCTGTCTGCTGTCAGGTGTGGCTGTGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
3UTR-3UTR TCA 90 bp ACCTCCCTAGGACTGTGCTTCTATAAATCCACTAACCAAAGAGTTCCGATTTCATCCGGTTGCTTTCCGTaGGTCCTGGGAATGCACACA +
Preference number: 2 (lower is better)
Translates to: TSLGLCFYKSTNQRVPISSGCFP*VLGMHT
Trigger: TGTGTGCATTCCCAGGACTCACGGAAAGCAACCGGA...TGAAATCGGAACTCTTTGGTTAGTGGATTTATAGAAGCACAGTCCTAGGGAGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
3UTR-3UTR TCA 90 bp TGCTGTCCTGTCTCATGTGGTTCCCTTTCTGGTAGTACTTGGAATTGTGAGTCCAGGAGTAGTAGAGTTTaGCCACCCACTCATTGTCTG +
Preference number: 2 (lower is better)
Translates to: CCPVSCGSLSGSTWNCESRSSRV*PPTHCL
Trigger: CAGACAATGAGTGGGTGGTCAAACTCTACTACTCCT...GGACTCACAATTCCAAGTACTACCAGAAAGGGAACCACATGAGACAGGACAGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR-3UTR CCA 90 bp CATACCCAGGCTGCTCCGATAGTAGATGACCACGACCATAGTGTGTGCCCGGAAAAAGAAATCTCATTTTaGGTTTCCTCGAGTTGTGGT +
Preference number: 2 (lower is better)
Translates to: HTQAAPIVDDHDHSVCPEKEISF*VSSSCG
Trigger: ACCACAACTCGAGGAAACCCAAAATGAGATTTCTTT...TTCCGGGCACACACTATGGTCGTGGTCATCTACTATCGGAGCAGCCTGGGTATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR-3UTR CCA 90 bp AGAACTGGGTTTCACAGAACCTCCTGGTTGGCTGAGAACACAGGAAGCAGGACCAGGACCTGCTGTGAATaGCAAGATACGGTATTTTAT +
Preference number: 2 (lower is better)
Translates to: RTGFHRTSWLAENTGSRTRTCCE*QDTVFY
Trigger: ATAAAATACCGTATCTTGCCATTCACAGCAGGTCCT...GGTCCTGCTTCCTGTGTTCTCAGCCAACCAGGAGGTTCTGTGAAACCCAGTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
3UTR-3UTR GCA 90 bp GGACCTGCTGTGAATGGCAAGATACGGTATTTTATACTAGAAACCCCTGCTCATCACCCACCAGCTCTCTaGTCACTCTTTCTAGGAACT +
Preference number: 2 (lower is better)
Translates to: GPAVNGKIRYFILETPAHHPPAL*SLFLGT
Trigger: AGTTCCTAGAAAGAGTGAGCAGAGAGCTGGTGGGTG...ATGAGCAGGGGTTTCTAGTATAAAATACCGTATCTTGCCATTCACAGCAGGTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
3UTR-3UTR TCA 90 bp ATCTGTCAGCTTAATATGACCATCCAGGTCGATGAGTATGTTGTCAGGCTTGATGGAAGACCTCCATCCTaGTCAGCAGGCTCATCATAT +
Preference number: 2 (lower is better)
Translates to: ICQLNMTIQVDEYVVRLDGRPPS*SAGSSY
Trigger: ATATGATGAGCCTGCTGATCAGGATGGAGGTCTTCC...ATCAAGCCTGACAACATACTCATCGACCTGGATGGTCATATTAAGCTGACAGAT
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR-3UTR GCA 90 bp ACCTCCCTAGGACTGTGCTTCTATAAATCCACTAACCAAAGAGTTCCGATTTCAGCCGCTGCATCTCACTaGGTGTTATTCTTGCTTGGA +
Preference number: 2 (lower is better)
Translates to: TSLGLCFYKSTNQRVPISAAASH*VLFLLG
Trigger: TCCAAGCAAGAATAACACGCAGTGAGATGCAGCGGC...TGAAATCGGAACTCTTTGGTTAGTGGATTTATAGAAGCACAGTCCTAGGGAGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
3UTR-3UTR CCA 90 bp AAAGAACTGGGTTTCACAGAACCTCCTGGTTGGCTGAGAACACAGGAAGCAGGAAAAGAAATCTCATTTTaGGTTTCCTCGAGTTGTGGT +
Preference number: 2 (lower is better)
Translates to: KELGFTEPPGWLRTQEAGKEISF*VSSSCG
Trigger: ACCACAACTCGAGGAAACCCAAAATGAGATTTCTTT...TCCTGCTTCCTGTGTTCTCAGCCAACCAGGAGGTTCTGTGAAACCCAGTTCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
3UTR-3UTR TCA 90 bp AGGACCTGCTGTGAATGGCAAGATACGGTATTTTATACTAGAAACCCCTGCTCAAATTTGAAATCATGTTaGCTCTTCCTGTTGCCCATT +
Preference number: 2 (lower is better)
Translates to: RTCCEWQDTVFYTRNPCSNLKSC*LFLLPI
Trigger: AATGGGCAACAGGAAGAGTCAACATGATTTCAAATT...TGAGCAGGGGTTTCTAGTATAAAATACCGTATCTTGCCATTCACAGCAGGTCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
3UTR-3UTR GCA 90 bp ACCTCCCTAGGACTGTGCTTCTATAAATCCACTAACCAAAGAGTTCCGATTTCAACTGCGTGTTATTCTTaGTTGGAAATAACAAGAGGG +
Preference number: 2 (lower is better)
Translates to: TSLGLCFYKSTNQRVPISTACYS*LEITRG
Trigger: CCCTCTTGTTATTTCCAAGCAAGAATAACACGCAGT...TGAAATCGGAACTCTTTGGTTAGTGGATTTATAGAAGCACAGTCCTAGGGAGGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
3UTR GCA 72 bp GCTGCCCTCCTTCGTCTCCAGGCTCTCAGTGGCAGGTaGTGTGGGCGCAGCCACCCAGGCGGGGTGCGAGGG +
Preference number: 3 (lower is better)
Translates to: AALLRLQALSGR*CGRSHPGGVRG
Trigger: CCCTCGCACCCCGCCTGGGTGGCTGCGCCCACAGCACCTGCCACTGAGAGCCTGGAGACGAAGGAGGGCAGC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR TCA 72 bp GCGAGGCAGTGTACAGCCCAGCATGGGCAGGAAAGGTaGGGCTGGCGGGAGGGCCACCCTGGGCCTTGGCCA +
Preference number: 3 (lower is better)
Translates to: ARQCTAQHGQER*GWREGHPGPWP
Trigger: TGGCCAAGGCCCAGGGTGGCCCTCCCGCCAGCCTCACCTTTCCTGCCCATGCTGGGCTGTACACTGCCTCGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR TCA 72 bp GGCTCGGGCCGCAGCACACGCACGCTCTTCACAGGGTaGAGGATGTGTGCGGCCGTCACGGCGGTGACCGTG +
Preference number: 3 (lower is better)
Translates to: GSGRSTRTLFTG*RMCAAVTAVTV
Trigger: CACGGTCACCGCCGTGACGGCCGCACACATCCTTCACCCTGTGAAGAGCGTGCGTGTGCTGCGGCCCGAGCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR CCA 72 bp GCCGGCTTGTGGTGCGAGGCAGTGTACAGCCCAGCATaGGCAGGAAAGGTGAGGCTGGCGGGAGGGCCACCC +
Preference number: 3 (lower is better)
Translates to: AGLWCEAVYSPA*AGKVRLAGGPP
Trigger: GGGTGGCCCTCCCGCCAGCCTCACCTTTCCTGCCCATGCTGGGCTGTACACTGCCTCGCACCACAAGCCGGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR GCA 72 bp CAGCACACGCACGCTCTTCACAGGGTGAAGGATGTGTaGGGCCGTCACGGCGGTGACCGTGTTGGGGGCGGG +
Preference number: 3 (lower is better)
Translates to: QHTHALHRVKDV*GRHGGDRVGGG
Trigger: CCCGCCCCCAACACGGTCACCGCCGTGACGGCCGCACACATCCTTCACCCTGTGAAGAGCGTGCGTGTGCTG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR GCA 72 bp GGAGCCGCCATAGTCCACATCCAGCGGGTGTGGGCCTaGGCTGCCCTCCTTCGTCTCCAGGCTCTCAGTGGC +
Preference number: 3 (lower is better)
Translates to: GAAIVHIQRVWA*AALLRLQALSG
Trigger: GCCACTGAGAGCCTGGAGACGAAGGAGGGCAGCGCAGGCCCACACCCGCTGGATGTGGACTATGGCGGCTCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR CCA 72 bp AGGCCAGCGTGTCCCAGGCCTTGGCGCTCTCTCCGCTaGCCTCGTGCCAGGGGCTTTCTTCATCCACCGGGT +
Preference number: 3 (lower is better)
Translates to: RPACPRPWRSLR*PRARGFLHPPG
Trigger: ACCCGGTGGATGAAGAAAGCCCCTGGCACGAGGCCAGCGGAGAGAGCGCCAAGGCCTGGGACACGCTGGCCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR TCA 72 bp TGGTGCTCTGCAGGGCAGGCGAGCGAGGCAGGGGGCTaGCGGCAGCTGCCGCTGCATCTCACTGCGTGTTAT +
Preference number: 3 (lower is better)
Translates to: WCSAGQASEAGG*RQLPLHLTACY
Trigger: ATAACACGCAGTGAGATGCAGCGGCAGCTGCCGTCAGCCCCCTGCCTCGCTCGCCTGCCCTGCAGAGCACCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
3UTR TCA 72 bp TCACAGGGTGAAGGATGTGTGCGGCCGTCACGGCGGTaGCCGTGTTGGGGGCGGGCAGTGAGGGCTCAGGTT +
Preference number: 3 (lower is better)
Translates to: SQGEGCVRPSRR*PCWGRAVRAQV
Trigger: AACCTGAGCCCTCACTGCCCGCCCCCAACACGGTCACCGCCGTGACGGCCGCACACATCCTTCACCCTGTGA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR CCA 72 bp CCGCCGAGTCACCGGGGTGGGCGCCAGGCCCTTTCCTaGGGAGGTCTGCTTGATGACTCGCACAATCTGCTC +
Preference number: 3 (lower is better)
Translates to: PPSHRGGRQALS*GGLLDDSHNLL
Trigger: GAGCAGATTGTGCGAGTCATCAAGCAGACCTCCCCAGGAAAGGGCCTGGCGCCCACCCCGGTGACTCGGCGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR GCA 72 bp CCGGCTCCGGCTCCAGGGAAGAGAAAGTCTAAATATTaGCGCGGCATCTCCTCCAGTGCGGCGGGGCCCTCG +
Preference number: 3 (lower is better)
Translates to: PAPAPGKRKSKY*RGISSSAAGPS
Trigger: CGAGGGCCCCGCCGCACTGGAGGAGATGCCGCGGCAATATTTAGACTTTCTCTTCCCTGGAGCCGGAGCCGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR GCA 72 bp GAGTTGGTCCTGCTGGGGCCAGCCCGAAAAGCCACATaGGGCCGCGAGGCTTCTAGACCCTGCTTCTGCAGC +
Preference number: 3 (lower is better)
Translates to: ELVLLGPARKAT*GREASRPCFCS
Trigger: GCTGCAGAAGCAGGGTCTAGAAGCCTCGCGGCCGCATGTGGCTTTTCGGGCTGGCCCCAGCAGGACCAACTC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR CCA 72 bp GGCTGGCGGGAGGGCCACCCTGGGCCTTGGCCATGCTaGAATAGGCATCTGGTGGCGTCTTGTTCTGGAAGG +
Preference number: 3 (lower is better)
Translates to: GWREGHPGPWPC*NRHLVASCSGR
Trigger: CCTTCCAGAACAAGACGCCACCAGATGCCTATTCCAGCATGGCCAAGGCCCAGGGTGGCCCTCCCGCCAGCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR GCA 72 bp GCTCAGTGCCCCCTCGCAGACTCTGCTGCACACTGGTaGACAGGCTGTCCAGGTCCACGCTGTACTGCTCAG +
Preference number: 3 (lower is better)
Translates to: AQCPLADSAAHW*TGCPGPRCTAQ
Trigger: CTGAGCAGTACAGCGTGGACCTGGACAGCCTGTGCACCAGTGTGCAGCAGAGTCTGCGAGGGGGCACTGAGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR CCA 72 bp GCCCTCGTAGTTTGCACCACCCAGCTGGTGGTAGGATaGGAGTGCTTCCCCTGTGCCCTCGAAACTGGGCCG +
Preference number: 3 (lower is better)
Translates to: ALVVCTTQLVVG*ECFPCALETGP
Trigger: CGGCCCAGTTTCGAGGGCACAGGGGAAGCACTCCCATCCTACCACCAGCTGGGTGGTGCAAACTACGAGGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR TCA 72 bp AGGGCACCGTGGAGCCCAGCTCGTACAAGTCAGCATTaGGGCTGTTCCTGGACGGTGCCAGCACAGCCTGTG +
Preference number: 3 (lower is better)
Translates to: RAPWSPARTSQH*GCSWTVPAQPV
Trigger: CACAGGCTGTGCTGGCACCGTCCAGGAACAGCCTCAATGCTGACTTGTACGAGCTGGGCTCCACGGTGCCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR GCA 72 bp GTAGTTTGCACCACCCAGCTGGTGGTAGGATGGGAGTaGTTCCCCTGTGCCCTCGAAACTGGGCCGCCGAGT +
Preference number: 3 (lower is better)
Translates to: VVCTTQLVVGWE*FPCALETGPPS
Trigger: ACTCGGCGGCCCAGTTTCGAGGGCACAGGGGAAGCACTCCCATCCTACCACCAGCTGGGTGGTGCAAACTAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR GCA 72 bp CGGGCCTCAGCGCTGAGCCTCACCTGCGTAGGGATATaGAGCGTGCTCTCCCAGTTGATCACCTTCAGCTGC +
Preference number: 3 (lower is better)
Translates to: RASALSLTCVGI*SVLSQLITFSC
Trigger: GCAGCTGAAGGTGATCAACTGGGAGAGCACGCTGCATATCCCTACGCAGGTGAGGCTCAGCGCTGAGGCCCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR CCA 72 bp ACTGCCCGTCTGCTTGAGCGCTCTGCCAGCCATCTCTaGCTCATTCCAGCTGGGGGAGGCTACTGCTGCTTG +
Preference number: 3 (lower is better)
Translates to: TARLLERSASHL*LIPAGGGYCCL
Trigger: CAAGCAGCAGTAGCCTCCCCCAGCTGGAATGAGCCAGAGATGGCTGGCAGAGCGCTCAAGCAGACGGGCAGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR CCA 72 bp CTTGCTCAGTGCCCCCTCGCAGACTCTGCTGCACACTaGTGCACAGGCTGTCCAGGTCCACGCTGTACTGCT +
Preference number: 3 (lower is better)
Translates to: LAQCPLADSAAH*CTGCPGPRCTA
Trigger: AGCAGTACAGCGTGGACCTGGACAGCCTGTGCACCAGTGTGCAGCAGAGTCTGCGAGGGGGCACTGAGCAAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR GCA 72 bp GTGTGCCCGGAAAGTGCGCACTTGGCTCTACTGCTGTaGTGTACCCTTTGGGAGGATGCTGGTGAGCCTGGG +
Preference number: 3 (lower is better)
Translates to: VCPESAHLALLL*CTLWEDAGEPG
Trigger: CCCAGGCTCACCAGCATCCTCCCAAAGGGTACAGCACAGCAGTAGAGCCAAGTGCGCACTTTCCGGGCACAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR GCA 72 bp ATTGAGGCTGTTCCTGGACGGTGCCAGCACAGCCTGTaGAGAGCTTTCGCCAGTAAACGTGGGACCCCGGGT +
Preference number: 3 (lower is better)
Translates to: IEAVPGRCQHSL*RAFASKRGTPG
Trigger: ACCCGGGGTCCCACGTTTACTGGCGAAAGCTCTGCACAGGCTGTGCTGGCACCGTCCAGGAACAGCCTCAAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR TCA 72 bp CCAAGGCAGCTTCGATACTCCTACTGCCCGTCTGCTTaGGCGCTCTGCCAGCCATCTCTGGCTCATTCCAGC +
Preference number: 3 (lower is better)
Translates to: PRQLRYSYCPSA*ALCQPSLAHSS
Trigger: GCTGGAATGAGCCAGAGATGGCTGGCAGAGCGCTCAAGCAGACGGGCAGTAGGAGTATCGAAGCTGCCTTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR GCA 72 bp GGTGTCCCGACAAGAGAATGTGCCAGGCACCTCTGGTaGTGCTTCTGCGCCCTCTGCTCCAGGGTCTTTAAC +
Preference number: 3 (lower is better)
Translates to: GVPTRECARHLW*CFCALCSRVFN
Trigger: GTTAAAGACCCTGGAGCAGAGGGCGCAGAAGCAGCACCAGAGGTGCCTGGCACATTCTCTTGTCGGGACACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR GCA 72 bp GTCACGGGAAAAGTCGATGGTGTTGAAGAACGGGTGTaGCTTGAGGTCATCTGCCCCATCCCTGCCCAGGCG +
Preference number: 3 (lower is better)
Translates to: VTGKVDGVEERV*LEVICPIPAQA
Trigger: CGCCTGGGCAGGGATGGGGCAGATGACCTCAAGGCACACCCGTTCTTCAACACCATCGACTTTTCCCGTGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR-3UTR CAA 90 bp CTTCGTGATGAGGTCTCGGGCCTCAGCGCTGAGCCTCACCTGCGTAGGGATATGATGGACTTGTCCATCTaGGCCCTCTTCAGCCGGTTG +
Preference number: 3 (lower is better)
Translates to: LRDEVSGLSAEPHLRRDMMDLSI*ALFSRL
Trigger: CAACCGGCTGAAGAGGGCCAAGATGGACAAGTCCAT...CATATCCCTACGCAGGTGAGGCTCAGCGCTGAGGCCCGAGACCTCATCACGAAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR GCA 72 bp AGGCATCTGGTGGCGTCTTGTTCTGGAAGGAGGAACTaGGCTGCACCCCATACCCAGGCTGCTCCGATAGTA +
Preference number: 3 (lower is better)
Translates to: RHLVASCSGRRN*AAPHTQAAPIV
Trigger: TACTATCGGAGCAGCCTGGGTATGGGGTGCAGCGCAGTTCCTCCTTCCAGAACAAGACGCCACCAGATGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR GCA 72 bp ACACTGGTGCACAGGCTGTCCAGGTCCACGCTGTACTaGTCAGACTTACTGGGCAGCAGCAAGTGCTTTGGG +
Preference number: 3 (lower is better)
Translates to: TLVHRLSRSTLY*SDLLGSSKCFG
Trigger: CCCAAAGCACTTGCTGCTGCCCAGTAAGTCTGAGCAGTACAGCGTGGACCTGGACAGCCTGTGCACCAGTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR GCA 72 bp CACCTTTGTGGCTCTTGTCACTCCTGTCTTGCTCAGTaGCCCCTCGCAGACTCTGCTGCACACTGGTGCACA +
Preference number: 3 (lower is better)
Translates to: HLCGSCHSCLAQ*PLADSAAHWCT
Trigger: TGTGCACCAGTGTGCAGCAGAGTCTGCGAGGGGGCACTGAGCAAGACAGGAGTGACAAGAGCCACAAAGGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR GCA 72 bp CGACGCTCCACCAGTCACAGAGCTGCGTGTACCCTTTaGGGAGAAGCACCTCCGGAGCGATGTAATTTGGTG +
Preference number: 3 (lower is better)
Translates to: RRSTSHRAACTL*GEAPPERCNLV
Trigger: CACCAAATTACATCGCTCCGGAGGTGCTTCTCCGCAAAGGGTACACGCAGCTCTGTGACTGGTGGAGCGTCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR CCA 72 bp GCTCCAGGGTCTTTAACCTGTCTCCACAGCGACAGTTaGAAACATCGTCCCAGAGGTCACCGGGCTCCATGC +
Preference number: 3 (lower is better)
Translates to: APGSLTCLHSDS*KHRPRGHRAPC
Trigger: GCATGGAGCCCGGTGACCTCTGGGACGATGTTTCCAACTGTCGCTGTGGAGACAGGTTAAAGACCCTGGAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR-3UTR CAA 90 bp GTCTCCACAGCGACAGTTGGAAACATCGTCCCAGAGGTCACCGGGCTCCATGCTCTTGACATGGGCCACTaGATTCCGGTTCAGGACATC +
Preference number: 3 (lower is better)
Translates to: VSTATVGNIVPEVTGLHALDMGH*IPVQDI
Trigger: GATGTCCTGAACCGGAATCAAGTGGCCCATGTCAAG...AGCATGGAGCCCGGTGACCTCTGGGACGATGTTTCCAACTGTCGCTGTGGAGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR GCA 72 bp TACTCCAAGGCAGCTTCGATACTCCTACTGCCCGTCTaGTTGAGCGCTCTGCCAGCCATCTCTGGCTCATTC +
Preference number: 3 (lower is better)
Translates to: YSKAASILLLPV*LSALPAISGSF
Trigger: GAATGAGCCAGAGATGGCTGGCAGAGCGCTCAAGCAGACGGGCAGTAGGAGTATCGAAGCTGCCTTGGAGTA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR GCA 72 bp ATAGTGTGTGCCCGGAAAGTGCGCACTTGGCTCTACTaGTGTGCTGTACCCTTTGGGAGGATGCTGGTGAGC +
Preference number: 3 (lower is better)
Translates to: IVCARKVRTWLY*CAVPFGRMLVS
Trigger: GCTCACCAGCATCCTCCCAAAGGGTACAGCACAGCAGTAGAGCCAAGTGCGCACTTTCCGGGCACACACTAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR CCA 72 bp CCCTTTGCGGAGAAGCACCTCCGGAGCGATGTAATTTaGTGTCCCGACAAGAGAATGTGCCAGGCACCTCTG +
Preference number: 3 (lower is better)
Translates to: PFAEKHLRSDVI*CPDKRMCQAPL
Trigger: CAGAGGTGCCTGGCACATTCTCTTGTCGGGACACCAAATTACATCGCTCCGGAGGTGCTTCTCCGCAAAGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR-3UTR CAA 90 bp CGAGTCACCGGGGTGGGCGCCAGGCCCTTTCCTGGGGAGGTCTGCTTGATGACTGAAGGATTCCTAAGCTaGAGTTTGTCTTCTGAAAAG +
Preference number: 3 (lower is better)
Translates to: RVTGVGARPFPGEVCLMTEGFLS*SLSSEK
Trigger: CTTTTCAGAAGACAAACTCAAGCTTAGGAATCCTTC...AGTCATCAAGCAGACCTCCCCAGGAAAGGGCCTGGCGCCCACCCCGGTGACTCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR-3UTR CAA 90 bp AAGAAAGGCGGCTGCCCAACCAGCATCTCAAAGAGAATCACACCGACGCTCCACTCTCCACAGCGACAGTaGGAAACATCGTCCCAGAGG +
Preference number: 3 (lower is better)
Translates to: KKGGCPTSISKRITPTLHSPQRQ*ETSSQR
Trigger: CCTCTGGGACGATGTTTCCAACTGTCGCTGTGGAGA...GTGGAGCGTCGGTGTGATTCTCTTTGAGATGCTGGTTGGGCAGCCGCCTTTCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR GCA 72 bp CTCGTACAAGTCAGCATTGAGGCTGTTCCTGGACGGTaGCAGCACAGCCTGTGCAGAGCTTTCGCCAGTAAA +
Preference number: 3 (lower is better)
Translates to: LVQVSIEAVPGR*QHSLCRAFASK
Trigger: TTTACTGGCGAAAGCTCTGCACAGGCTGTGCTGGCACCGTCCAGGAACAGCCTCAATGCTGACTTGTACGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR CCA 72 bp GAGGCAAAGAGAGAAGGCAGCAGCCACAAAGCTTCCTaGAGCGGCCTCGAAGACACTAAAGAGACAGCTGAC +
Preference number: 3 (lower is better)
Translates to: EAKREGSSHKAS*SGLEDTKETAD
Trigger: GTCAGCTGTCTCTTTAGTGTCTTCGAGGCCGCTCCAGGAAGCTTTGTGGCTGCTGCCTTCTCTCTTTGCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR CCA 72 bp TTGTCTCTGCCAGCTTTGTCTCCCTTCGCACCTTTGTaGCTCTTGTCACTCCTGTCTTGCTCAGTGCCCCCT +
Preference number: 3 (lower is better)
Translates to: LSLPALSPFAPL*LLSLLSCSVPP
Trigger: AGGGGGCACTGAGCAAGACAGGAGTGACAAGAGCCACAAAGGTGCGAAGGGAGACAAAGCTGGCAGAGACAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR-3UTR CAA 90 bp GGAAGAGAAAGTCTAAATATTGCCGCGGCATCTCCTCCAGTGCGGCGGGGCCCTTACTCTGCCACATTCTaGAGAACTCCCAGATGTCAC +
Preference number: 3 (lower is better)
Translates to: GRESLNIAAASPPVRRGPYSATF*RTPRCH
Trigger: GTGACATCTGGGAGTTCTCAAGAATGTGGCAGAGTA...AGGGCCCCGCCGCACTGGAGGAGATGCCGCGGCAATATTTAGACTTTCTCTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR TCA 72 bp TCTCTGCTATTCTTGCGGACAGGCACCGGGGAGGTCTaGATCTGCTTTTTGTCTCTGCCAGCTTTGTCTCCC +
Preference number: 3 (lower is better)
Translates to: SLLFLRTGTGEV*ICFLSLPALSP
Trigger: GGGAGACAAAGCTGGCAGAGACAAAAAGCAGATTCAGACCTCCCCGGTGCCTGTCCGCAAGAATAGCAGAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR TCA 72 bp TCCTTCTTCCTGAGAGTCTTCATGGCGTACAGAGCGTaGGTGTCCAGCTTACAAGCGAGGCACACTTCCCCA +
Preference number: 3 (lower is better)
Translates to: SFFLRVFMAYRA*VSSLQARHTSP
Trigger: TGGGGAAGTGTGCCTCGCTTGTAAGCTGGACACTCACGCTCTGTACGCCATGAAGACTCTCAGGAAGAAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR GCA 72 bp CATCTTGTGGACACTTTCAATGGCCAGGGTCAACTCTaGAATGTAGAAGCGGGCCAGGTGCTCAGGGAAGAC +
Preference number: 3 (lower is better)
Translates to: HLVDTFNGQGQL*NVEAGQVLRED
Trigger: GTCTTCCCTGAGCACCTGGCCCGCTTCTACATTGCAGAGTTGACCCTGGCCATTGAAAGTGTCCACAAGATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR GCA 72 bp AGTTGGAAACATCGTCCCAGAGGTCACCGGGCTCCATaGTGTCCTGTCTCATGTGGTTCCCTTTCTGGTAGT +
Preference number: 3 (lower is better)
Translates to: SWKHRPRGHRAP*CPVSCGSLSGS
Trigger: ACTACCAGAAAGGGAACCACATGAGACAGGACAGCATGGAGCCCGGTGACCTCTGGGACGATGTTTCCAACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR TCA 72 bp TCTGCTCATTCCTGGGGTCCAGGTAGCCCATCTTACTaGTGTACTCCAAGGCAGCTTCGATACTCCTACTGC +
Preference number: 3 (lower is better)
Translates to: SAHSWGPGSPSY*CTPRQLRYSYC
Trigger: GCAGTAGGAGTATCGAAGCTGCCTTGGAGTACATCAGTAAGATGGGCTACCTGGACCCCAGGAATGAGCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR TCA 72 bp AAATCTCATTTTGGGTTTCCTCGAGTTGTGGTTAACTaGGGCTTACACGTACACCGGCTGGCAGCCCTCGGC +
Preference number: 3 (lower is better)
Translates to: KSHFGFPRVVVN*GLHVHRLAALG
Trigger: GCCGAGGGCTGCCAGCCGGTGTACGTGTAAGCCTCAGTTAACCACAACTCGAGGAAACCCAAAATGAGATTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR GCA 72 bp TCCGTCGCCTCATCCTCTCTTATTGCACAGACGTCTTaGCTCACGCTCTCCAGCTCTTCCTTTTCTAGCTGT +
Preference number: 3 (lower is better)
Translates to: SVASSSLIAQTS*LTLSSSSFSSC
Trigger: ACAGCTAGAAAAGGAAGAGCTGGAGAGCGTGAGGCAAGACGTCTGTGCAATAAGAGAGGATGAGGCGACGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
3UTR CCA 72 bp AGGCCCAAAGAACTGGGTTTCACAGAACCTCCTGGTTaGCTGAGAACACAGGAAGCAGGACCCTTACATCAC +
Preference number: 3 (lower is better)
Translates to: RPKELGFTEPPG*LRTQEAGPLHH
Trigger: GTGATGTAAGGGTCCTGCTTCCTGTGTTCTCAGCCAACCAGGAGGTTCTGTGAAACCCAGTTCTTTGGGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
3UTR-3UTR CAA 90 bp CCCACAGCCACACCTGACAGCAGACAGGACTACGGAAATGGACAAAACGCTAGACCTCATCCTCTCTTATaGCACAGACGTCTTGCCTCA +
Preference number: 3 (lower is better)
Translates to: PTATPDSRQDYGNGQNARPHPLL*HRRLAS
Trigger: TGAGGCAAGACGTCTGTGCAATAAGAGAGGATGAGG...TCTAGCGTTTTGTCCATTTCCGTAGTCCTGTCTGCTGTCAGGTGTGGCTGTGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
3UTR GCA 72 bp GAACACAGGAAGCAGGACCCTTACATCACCTATGGCTaGGGGAACCCTGTGAGTGAAAGAATGAATAGCAGG +
Preference number: 3 (lower is better)
Translates to: EHRKQDPYITYG*GNPVSERMNSR
Trigger: CCTGCTATTCATTCTTTCACTCACAGGGTTCCCGCAGCCATAGGTGATGTAAGGGTCCTGCTTCCTGTGTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
3UTR TCA 72 bp CCAAAGAACTGGGTTTCACAGAACCTCCTGGTTGGCTaGGAACACAGGAAGCAGGACCCTTACATCACCTAT +
Preference number: 3 (lower is better)
Translates to: PKNWVSQNLLVG*EHRKQDPYITY
Trigger: ATAGGTGATGTAAGGGTCCTGCTTCCTGTGTTCTCAGCCAACCAGGAGGTTCTGTGAAACCCAGTTCTTTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
3UTR GCA 72 bp CCACACCAGACACCGGAGTCACACCCACCAGCTCTCTaGTCACTCTTTCTAGGAACTATAATATGCAAAGGA +
Preference number: 3 (lower is better)
Translates to: PHQTPESHPPAL*SLFLGTIICKG
Trigger: TCCTTTGCATATTATAGTTCCTAGAAAGAGTGAGCAGAGAGCTGGTGGGTGTGACTCCGGTGTCTGGTGTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
3UTR GCA 72 bp CAAGATACGGTATTTTATACTAGAAACCCCTGCTCATaGAGTACTCTCCACACCAGACACCGGAGTCACACC +
Preference number: 3 (lower is better)
Translates to: QDTVFYTRNPCS*STLHTRHRSHT
Trigger: GGTGTGACTCCGGTGTCTGGTGTGGAGAGTACTGCATGAGCAGGGGTTTCTAGTATAAAATACCGTATCTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
3UTR GCA 72 bp CATCTCTGGCTCATTCCAGCTGGGGGAGGCTACTGCTaGTTGCTGAACATTTCCAAAGTAAATCAGAAAACC +
Preference number: 3 (lower is better)
Translates to: HLWLIPAGGGYC*LLNISKVNQKT
Trigger: GGTTTTCTGATTTACTTTGGAAATGTTCAGCAAGCAGCAGTAGCCTCCCCCAGCTGGAATGAGCCAGAGATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR GCA 72 bp AGCCATCTCTGGCTCATTCCAGCTGGGGGAGGCTACTaGTGCTTGCTGAACATTTCCAAAGTAAATCAGAAA +
Preference number: 3 (lower is better)
Translates to: SHLWLIPAGGGY*CLLNISKVNQK
Trigger: TTTCTGATTTACTTTGGAAATGTTCAGCAAGCAGCAGTAGCCTCCCCCAGCTGGAATGAGCCAGAGATGGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR-3UTR CAA 90 bp AGAACTGGGTTTCACAGAACCTCCTGGTTGGCTGAGAACACAGGAAGCAGGACCAAAAGAAATCTCATTTaGGGTTTCCTCGAGTTGTGG +
Preference number: 3 (lower is better)
Translates to: RTGFHRTSWLAENTGSRTKRNLI*GFLELW
Trigger: CCACAACTCGAGGAAACCCAAAATGAGATTTCTTTT...GGTCCTGCTTCCTGTGTTCTCAGCCAACCAGGAGGTTCTGTGAAACCCAGTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
3UTR-3UTR CAA 90 bp CTTCAGCCGGTTGTAGTTAGACTCCTTCTGGTAGAGGATCTTCCTCATCTGCTCAAAAGAAATCTCATTTaGGGTTTCCTCGAGTTGTGG +
Preference number: 3 (lower is better)
Translates to: LQPVVVRLLLVEDLPHLLKRNLI*GFLELW
Trigger: CCACAACTCGAGGAAACCCAAAATGAGATTTCTTTT...GAGCAGATGAGGAAGATCCTCTACCAGAAGGAGTCTAACTACAACCGGCTGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR CCA 72 bp CGGGTGCACTGTGCTAAGAACCTTGGTGAGAAGATTTaGCATAGCATAATGAAAATGGGATGTGTTCCATCC +
Preference number: 3 (lower is better)
Translates to: RVHCAKNLGEKI*HSIMKMGCVPS
Trigger: GGATGGAACACATCCCATTTTCATTATGCTATGCCAAATCTTCTCACCAAGGTTCTTAGCACAGTGCACCCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
3UTR-3UTR CAA 90 bp ACCTCCCTAGGACTGTGCTTCTATAAATCCACTAACCAAAGAGTTCCGATTTCAGCGTGTTATTCTTGCTaGGAAATAACAAGAGGGCGA +
Preference number: 3 (lower is better)
Translates to: TSLGLCFYKSTNQRVPISACYSC*EITRGR
Trigger: TCGCCCTCTTGTTATTTCCAAGCAAGAATAACACGC...TGAAATCGGAACTCTTTGGTTAGTGGATTTATAGAAGCACAGTCCTAGGGAGGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
3UTR-3UTR CAA 90 bp AGGACCTGCTGTGAATGGCAAGATACGGTATTTTATACTAGAAACCCCTGCTCAGAAGGATTCCTAAGCTaGAGTTTGTCTTCTGAAAAG +
Preference number: 3 (lower is better)
Translates to: RTCCEWQDTVFYTRNPCSEGFLS*SLSSEK
Trigger: CTTTTCAGAAGACAAACTCAAGCTTAGGAATCCTTC...TGAGCAGGGGTTTCTAGTATAAAATACCGTATCTTGCCATTCACAGCAGGTCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
3UTR TCA 72 bp TGTTTTAATGCAGTGAAGGTCCTCAGAGGGCTAATTTaGAATCATGTTGACTCTTCCTGTTGCCCATTTACC +
Preference number: 3 (lower is better)
Translates to: CFNAVKVLRGLI*NHVDSSCCPFT
Trigger: GGTAAATGGGCAACAGGAAGAGTCAACATGATTTCAAATTAGCCCTCTGAGGACCTTCACTGCATTAAAACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022531.14
ENSMUST00000174213.8
3UTR GCA 72 bp GTAAGTCACAATACAAGCACAGCAGACTTCAGAATATaGCATTCATACAAATGTAAACCAGACACAGGAATG +
Preference number: 3 (lower is better)
Translates to: VSHNTSTADFRI*HSYKCKPDTGM
Trigger: CATTCCTGTGTCTGGTTTACATTTGTATGAATGGCATATTCTGAAGTCTGCTGTGCTTGTATTGTGACTTAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
3UTR TCA 72 bp CTTTTTACAAAGTTAGAAAAACGTATTAAGTCACATTaGGATGTGACAGACACCTCTCATGTGAAAGAGGCC +
Preference number: 3 (lower is better)
Translates to: LFTKLEKRIKSH*DVTDTSHVKEA
Trigger: GGCCTCTTTCACATGAGAGGTGTCTGTCACATCTCAATGTGACTTAATACGTTTTTCTAACTTTGTAAAAAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR TCA 90 bp AATGAGCCGCTTAGGGGCTGGCTGATAGATCCGGTTGCTTTCCGTGAGTCCTGGCGGCCGTCACGGCGGTaGCCGTGTTGGGGGCGGGCA +
Preference number: 4 (lower is better)
Translates to: NEPLRGWLIDPVAFRESWRPSRR*PCWGRA
Trigger: TGCCCGCCCCCAACACGGTCACCGCCGTGACGGCCG...CCAGGACTCACGGAAAGCAACCGGATCTATCAGCCAGCCCCTAAGCGGCTCATT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR CCA 90 bp CTGCACTCTCTGCGGGCTCTGAGGGCTTCGGGCACCGGAAGGGATAGCCGTTGTCCAGCAGCCCCTGGGTaGAAGCCTTGGATGGCTGCT +
Preference number: 4 (lower is better)
Translates to: LHSLRALRASGTGRDSRCPAAPG*KPWMAA
Trigger: AGCAGCCATCCAAGGCTTCCACCCAGGGGCTGCTGG...ACAACGGCTATCCCTTCCGGTGCCCGAAGCCCTCAGAGCCCGCAGAGAGTGCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
CDS-3UTR CCA 90 bp AATGAGCCGCTTAGGGGCTGGCTGATAGATCCGGTTGCTTTCCGTGAGTCCTGGCAGTGGCAGGTGCTGTaGGCGCAGCCACCCAGGCGG +
Preference number: 4 (lower is better)
Translates to: NEPLRGWLIDPVAFRESWQWQVL*AQPPRR
Trigger: CCGCCTGGGTGGCTGCGCCCACAGCACCTGCCACTG...CCAGGACTCACGGAAAGCAACCGGATCTATCAGCCAGCCCCTAAGCGGCTCATT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR GCA 90 bp GCAGCACACGCACGCTCTTCACAGGGTGAAGGATGTGTGCGGCCGTCACGGCGGGCCTGGAGGCATCTTTaGTCCCCAGGACTTTGGCAT +
Preference number: 4 (lower is better)
Translates to: AAHARSSQGEGCVRPSRRAWRHL*SPGLWH
Trigger: ATGCCAAAGTCCTGGGGAGCAAAGATGCCTCCAGGC...CCGCCGTGACGGCCGCACACATCCTTCACCCTGTGAAGAGCGTGCGTGTGCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
3UTR CAA 72 bp CAGGGCACCGTGGAGCCCAGCTCGTACAAGTCAGCATaGAGGCTGTTCCTGGACGGTGCCAGCACAGCCTGT +
Preference number: 4 (lower is better)
Translates to: QGTVEPSSYKSA*RLFLDGASTAC
Trigger: ACAGGCTGTGCTGGCACCGTCCAGGAACAGCCTCAATGCTGACTTGTACGAGCTGGGCTCCACGGTGCCCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
CDS-3UTR GCA 90 bp AATGAGCCGCTTAGGGGCTGGCTGATAGATCCGGTTGCTTTCCGTGAGTCCTGGGCCGCCGGCTTGTGGTaGGAGGCAGTGTACAGCCCA +
Preference number: 4 (lower is better)
Translates to: NEPLRGWLIDPVAFRESWAAGLW*EAVYSP
Trigger: TGGGCTGTACACTGCCTCGCACCACAAGCCGGCGGC...CCAGGACTCACGGAAAGCAACCGGATCTATCAGCCAGCCCCTAAGCGGCTCATT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR GCA 90 bp AGTACTCTCCACACCAGACACCGGAGTCACACCCACCAGCTCTCTGCTCACTCTGCCAGGCACCTCTGGTaGTGCTTCTGCGCCCTCTGC +
Preference number: 4 (lower is better)
Translates to: STLHTRHRSHTHQLSAHSARHLW*CFCALC
Trigger: GCAGAGGGCGCAGAAGCAGCACCAGAGGTGCCTGGC...AGAGTGAGCAGAGAGCTGGTGGGTGTGACTCCGGTGTCTGGTGTGGAGAGTACT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR CCA 90 bp GAAGGAGTTGGTCCTGCTGGGGCCAGCCCGAAAAGCCACATGCGGCCGCGAGGCAAGTGCCTGACTCGTTaGCAAAAGGCAGGAGGGAAT +
Preference number: 4 (lower is better)
Translates to: EGVGPAGASPKSHMRPRGKCLTR*QKAGGN
Trigger: ATTCCCTCCTGCCTTTTGCCAACGAGTCAGGCACTT...GCCTCGCGGCCGCATGTGGCTTTTCGGGCTGGCCCCAGCAGGACCAACTCCTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
CDS-3UTR CCA 90 bp GCAGTACTCTCCACACCAGACACCGGAGTCACACCCACCAGCTCTCTGCTCACTCAAGTCCGCATCCCCTaGGTCTGCACTCTCTGCGGG +
Preference number: 4 (lower is better)
Translates to: AVLSTPDTGVTPTSSLLTQVRIP*VCTLCG
Trigger: CCCGCAGAGAGTGCAGACCCAGGGGATGCGGACTTG...AGTGAGCAGAGAGCTGGTGGGTGTGACTCCGGTGTCTGGTGTGGAGAGTACTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
3UTR CAA 72 bp GGCAGTGAGGGCTCAGGTTGTGGGTTGTTGAAGGAGTaGGTCCTGCTGGGGCCAGCCCGAAAAGCCACATGC +
Preference number: 4 (lower is better)
Translates to: GSEGSGCGLLKE*VLLGPARKATC
Trigger: GCATGTGGCTTTTCGGGCTGGCCCCAGCAGGACCAACTCCTTCAACAACCCACAACCTGAGCCCTCACTGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
CDS-3UTR GCA 90 bp AATGAGCCGCTTAGGGGCTGGCTGATAGATCCGGTTGCTTTCCGTGAGTCCTGGAGGCACCTCTGGTGCTaGTTCTGCGCCCTCTGCTCC +
Preference number: 4 (lower is better)
Translates to: NEPLRGWLIDPVAFRESWRHLWC*FCALCS
Trigger: GGAGCAGAGGGCGCAGAAGCAGCACCAGAGGTGCCT...CCAGGACTCACGGAAAGCAACCGGATCTATCAGCCAGCCCCTAAGCGGCTCATT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR CCA 90 bp AATGAGCCGCTTAGGGGCTGGCTGATAGATCCGGTTGCTTTCCGTGAGTCCTGGTCTCCAGGCTCTCAGTaGCAGGTGCTGTGGGCGCAG +
Preference number: 4 (lower is better)
Translates to: NEPLRGWLIDPVAFRESWSPGSQ*QVLWAQ
Trigger: CTGCGCCCACAGCACCTGCCACTGAGAGCCTGGAGA...CCAGGACTCACGGAAAGCAACCGGATCTATCAGCCAGCCCCTAAGCGGCTCATT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR TCA 90 bp GCAGTACTCTCCACACCAGACACCGGAGTCACACCCACCAGCTCTCTGCTCACTAGCTGCCGAAGTGCCTaGCTCGTTGGCAAAAGGCAG +
Preference number: 4 (lower is better)
Translates to: AVLSTPDTGVTPTSSLLTSCRSA*LVGKRQ
Trigger: CTGCCTTTTGCCAACGAGTCAGGCACTTCGGCAGCT...AGTGAGCAGAGAGCTGGTGGGTGTGACTCCGGTGTCTGGTGTGGAGAGTACTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR TCA 90 bp AGAACTGGGTTTCACAGAACCTCCTGGTTGGCTGAGAACACAGGAAGCAGGACCTTGGGAGGATGCTGGTaGGCCTGGGCACCGTGGGTG +
Preference number: 4 (lower is better)
Translates to: RTGFHRTSWLAENTGSRTLGGCW*AWAPWV
Trigger: CACCCACGGTGCCCAGGCTCACCAGCATCCTCCCAA...GGTCCTGCTTCCTGTGTTCTCAGCCAACCAGGAGGTTCTGTGAAACCCAGTTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR GCA 90 bp AATGAGCCGCTTAGGGGCTGGCTGATAGATCCGGTTGCTTTCCGTGAGTCCTGGCCTCGCAGACTCTGCTaGACACTGGTGCACAGGCTG +
Preference number: 4 (lower is better)
Translates to: NEPLRGWLIDPVAFRESWPRRLC*TLVHRL
Trigger: CAGCCTGTGCACCAGTGTGCAGCAGAGTCTGCGAGG...CCAGGACTCACGGAAAGCAACCGGATCTATCAGCCAGCCCCTAAGCGGCTCATT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR CCA 90 bp CCCACAGCCACACCTGACAGCAGACAGGACTACGGAAATGGACAAAACGCTAGACCCACCAGCAGCCCCTaGGTGGAAGCCTTGGATGGC +
Preference number: 4 (lower is better)
Translates to: PTATPDSRQDYGNGQNARPTSSP*VEALDG
Trigger: GCCATCCAAGGCTTCCACCCAGGGGCTGCTGGTGGG...TCTAGCGTTTTGTCCATTTCCGTAGTCCTGTCTGCTGTCAGGTGTGGCTGTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR CCA 90 bp AATGAGCCGCTTAGGGGCTGGCTGATAGATCCGGTTGCTTTCCGTGAGTCCTGGAGGAGTTGGTCCTGCTaGGGCCAGCCCGAAAAGCCA +
Preference number: 4 (lower is better)
Translates to: NEPLRGWLIDPVAFRESWRSWSC*GQPEKP
Trigger: TGGCTTTTCGGGCTGGCCCCAGCAGGACCAACTCCT...CCAGGACTCACGGAAAGCAACCGGATCTATCAGCCAGCCCCTAAGCGGCTCATT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR TCA 90 bp AATGAGCCGCTTAGGGGCTGGCTGATAGATCCGGTTGCTTTCCGTGAGTCCTGGGCTGTAGCCTCCGGCTaGCCTTCTGCTGGTAGGTTT +
Preference number: 4 (lower is better)
Translates to: NEPLRGWLIDPVAFRESWAVASG*PSAGRF
Trigger: AAACCTACCAGCAGAAGGTCAGCCGGAGGCTACAGC...CCAGGACTCACGGAAAGCAACCGGATCTATCAGCCAGCCCCTAAGCGGCTCATT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR GCA 90 bp GCAGTACTCTCCACACCAGACACCGGAGTCACACCCACCAGCTCTCTGCTCACTTGCTTCTGCGCCCTCTaGTCCAGGGTCTTTAACCTG +
Preference number: 4 (lower is better)
Translates to: AVLSTPDTGVTPTSSLLTCFCAL*SRVFNL
Trigger: CAGGTTAAAGACCCTGGAGCAGAGGGCGCAGAAGCA...AGTGAGCAGAGAGCTGGTGGGTGTGACTCCGGTGTCTGGTGTGGAGAGTACTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR GCA 90 bp AGAACTGGGTTTCACAGAACCTCCTGGTTGGCTGAGAACACAGGAAGCAGGACCAGGCACCTCTGGTGCTaGTTCTGCGCCCTCTGCTCC +
Preference number: 4 (lower is better)
Translates to: RTGFHRTSWLAENTGSRTRHLWC*FCALCS
Trigger: GGAGCAGAGGGCGCAGAAGCAGCACCAGAGGTGCCT...GGTCCTGCTTCCTGTGTTCTCAGCCAACCAGGAGGTTCTGTGAAACCCAGTTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR GCA 90 bp AAAGAACTGGGTTTCACAGAACCTCCTGGTTGGCTGAGAACACAGGAAGCAGGACATCTGCCCCATCCCTaGCCAGGCGGCAGTCAGCCG +
Preference number: 4 (lower is better)
Translates to: KELGFTEPPGWLRTQEAGHLPHP*PGGSQP
Trigger: CGGCTGACTGCCGCCTGGGCAGGGATGGGGCAGATG...TCCTGCTTCCTGTGTTCTCAGCCAACCAGGAGGTTCTGTGAAACCCAGTTCTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR CCA 90 bp AGAACTGGGTTTCACAGAACCTCCTGGTTGGCTGAGAACACAGGAAGCAGGACCTCTCCAGGCTCTCAGTaGCAGGTGCTGTGGGCGCAG +
Preference number: 4 (lower is better)
Translates to: RTGFHRTSWLAENTGSRTSPGSQ*QVLWAQ
Trigger: CTGCGCCCACAGCACCTGCCACTGAGAGCCTGGAGA...GGTCCTGCTTCCTGTGTTCTCAGCCAACCAGGAGGTTCTGTGAAACCCAGTTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR CCA 90 bp GCAGTACTCTCCACACCAGACACCGGAGTCACACCCACCAGCTCTCTGCTCACTATAGAAGGCGTGCTCTaGATGCTTGCTGCTGGGGGA +
Preference number: 4 (lower is better)
Translates to: AVLSTPDTGVTPTSSLLTIEGVL*MLAAGG
Trigger: TCCCCCAGCAGCAAGCATCCAGAGCACGCCTTCTAT...AGTGAGCAGAGAGCTGGTGGGTGTGACTCCGGTGTCTGGTGTGGAGAGTACTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
3UTR CAA 72 bp CTGCCAGCTTTGTCTCCCTTCGCACCTTTGTGGCTCTaGTCACTCCTGTCTTGCTCAGTGCCCCCTCGCAGA +
Preference number: 4 (lower is better)
Translates to: LPALSPFAPLWL*SLLSCSVPPRR
Trigger: TCTGCGAGGGGGCACTGAGCAAGACAGGAGTGACAAGAGCCACAAAGGTGCGAAGGGAGACAAAGCTGGCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
CDS-3UTR TCA 90 bp AAAGAACTGGGTTTCACAGAACCTCCTGGTTGGCTGAGAACACAGGAAGCAGGAGTTGGGGGCGGGCAGTaGGGGCTCAGGTTGTGGGTT +
Preference number: 4 (lower is better)
Translates to: KELGFTEPPGWLRTQEAGVGGGQ*GLRLWV
Trigger: AACCCACAACCTGAGCCCTCACTGCCCGCCCCCAAC...TCCTGCTTCCTGTGTTCTCAGCCAACCAGGAGGTTCTGTGAAACCCAGTTCTTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR TCA 90 bp CAGACGTCTTGCCTCACGCTCTCCAGCTCTTCCTTTTCTAGCTGTGGACAAGTGACGCTCTTCACAGGGTaGAGGATGTGTGCGGCCGTC +
Preference number: 4 (lower is better)
Translates to: QTSCLTLSSSSFSSCGQVTLFTG*RMCAAV
Trigger: GACGGCCGCACACATCCTTCACCCTGTGAAGAGCGT...CACTTGTCCACAGCTAGAAAAGGAAGAGCTGGAGAGCGTGAGGCAAGACGTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR TCA 90 bp AATGAGCCGCTTAGGGGCTGGCTGATAGATCCGGTTGCTTTCCGTGAGTCCTGGATGGCGTACAGAGCGTaGGTGTCCAGCTTACAAGCG +
Preference number: 4 (lower is better)
Translates to: NEPLRGWLIDPVAFRESWMAYRA*VSSLQA
Trigger: CGCTTGTAAGCTGGACACTCACGCTCTGTACGCCAT...CCAGGACTCACGGAAAGCAACCGGATCTATCAGCCAGCCCCTAAGCGGCTCATT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR TCA 90 bp AATGAGCCGCTTAGGGGCTGGCTGATAGATCCGGTTGCTTTCCGTGAGTCCTGGTGTCCCTCTCAGCCTTaGCATGGGCCACTTGATTCC +
Preference number: 4 (lower is better)
Translates to: NEPLRGWLIDPVAFRESWCPSQP*HGPLDS
Trigger: GGAATCAAGTGGCCCATGTCAAGGCTGAGAGGGACA...CCAGGACTCACGGAAAGCAACCGGATCTATCAGCCAGCCCCTAAGCGGCTCATT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR GCA 90 bp AGTACTCTCCACACCAGACACCGGAGTCACACCCACCAGCTCTCTGCTCACTCTGAAGCCTTGGATGGCTaGTTCAGCCCCTCTCGAATC +
Preference number: 4 (lower is better)
Translates to: STLHTRHRSHTHQLSAHSEALDG*FSPSRI
Trigger: GATTCGAGAGGGGCTGAAGCAGCCATCCAAGGCTTC...AGAGTGAGCAGAGAGCTGGTGGGTGTGACTCCGGTGTCTGGTGTGGAGAGTACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR GCA 90 bp GCAGTACTCTCCACACCAGACACCGGAGTCACACCCACCAGCTCTCTGCTCACTTGCCAGCACAGCCTGTaGAGAGCTTTCGCCAGTAAA +
Preference number: 4 (lower is better)
Translates to: AVLSTPDTGVTPTSSLLTCQHSL*RAFASK
Trigger: TTTACTGGCGAAAGCTCTGCACAGGCTGTGCTGGCA...AGTGAGCAGAGAGCTGGTGGGTGTGACTCCGGTGTCTGGTGTGGAGAGTACTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR GCA 90 bp AATGAGCCGCTTAGGGGCTGGCTGATAGATCCGGTTGCTTTCCGTGAGTCCTGGAGGTCCACGCTGTACTaGTCAGACTTACTGGGCAGC +
Preference number: 4 (lower is better)
Translates to: NEPLRGWLIDPVAFRESWRSTLY*SDLLGS
Trigger: GCTGCCCAGTAAGTCTGAGCAGTACAGCGTGGACCT...CCAGGACTCACGGAAAGCAACCGGATCTATCAGCCAGCCCCTAAGCGGCTCATT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR GCA 90 bp AATGAGCCGCTTAGGGGCTGGCTGATAGATCCGGTTGCTTTCCGTGAGTCCTGGCACCAGTCACAGAGCTaGGTGTACCCTTTGCGGAGA +
Preference number: 4 (lower is better)
Translates to: NEPLRGWLIDPVAFRESWHQSQS*VYPLRR
Trigger: TCTCCGCAAAGGGTACACGCAGCTCTGTGACTGGTG...CCAGGACTCACGGAAAGCAACCGGATCTATCAGCCAGCCCCTAAGCGGCTCATT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR CCA 90 bp AATGAGCCGCTTAGGGGCTGGCTGATAGATCCGGTTGCTTTCCGTGAGTCCTGGGTCCAAACTTCGGGGTaGCTCTCATTTGCTGCTGCC +
Preference number: 4 (lower is better)
Translates to: NEPLRGWLIDPVAFRESWVQTSG*LSFAAA
Trigger: GGCAGCAGCAAATGAGAGCCACCCCGAAGTTTGGAC...CCAGGACTCACGGAAAGCAACCGGATCTATCAGCCAGCCCCTAAGCGGCTCATT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
3UTR CAA 72 bp TGCTCCAGGGTCTTTAACCTGTCTCCACAGCGACAGTaGGAAACATCGTCCCAGAGGTCACCGGGCTCCATG +
Preference number: 4 (lower is better)
Translates to: CSRVFNLSPQRQ*ETSSQRSPGSM
Trigger: CATGGAGCCCGGTGACCTCTGGGACGATGTTTCCAACTGTCGCTGTGGAGACAGGTTAAAGACCCTGGAGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
CDS-3UTR TCA 90 bp CATACCCAGGCTGCTCCGATAGTAGATGACCACGACCATAGTGTGTGCCCGGAAGCATTCACCAACTCCTaGAGCATCTGCCGGTTCACC +
Preference number: 4 (lower is better)
Translates to: HTQAAPIVDDHDHSVCPEAFTNS*SICRFT
Trigger: GGTGAACCGGCAGATGCTTCAGGAGTTGGTGAATGC...TTCCGGGCACACACTATGGTCGTGGTCATCTACTATCGGAGCAGCCTGGGTATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
CDS-3UTR TCA 90 bp GCACAGCAGACTTCAGAATATGCCATTCATACAAATGTAAACCAGACACAGGAACGGCCGTCACGGCGGTaGCCGTGTTGGGGGCGGGCA +
Preference number: 4 (lower is better)
Translates to: AQQTSEYAIHTNVNQTQERPSRR*PCWGRA
Trigger: TGCCCGCCCCCAACACGGTCACCGCCGTGACGGCCG...TTCCTGTGTCTGGTTTACATTTGTATGAATGGCATATTCTGAAGTCTGCTGTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR TCA 90 bp AGTACTCTCCACACCAGACACCGGAGTCACACCCACCAGCTCTCTGCTCACTCTTTGACATGGGCCACTTaGTTCCGGTTCAGGACATCC +
Preference number: 4 (lower is better)
Translates to: STLHTRHRSHTHQLSAHSLTWAT*FRFRTS
Trigger: GGATGTCCTGAACCGGAATCAAGTGGCCCATGTCAA...AGAGTGAGCAGAGAGCTGGTGGGTGTGACTCCGGTGTCTGGTGTGGAGAGTACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR GCA 90 bp AATGAGCCGCTTAGGGGCTGGCTGATAGATCCGGTTGCTTTCCGTGAGTCCTGGATGACTCGCACAATCTaGTCATTCCTGGGGTCCAGG +
Preference number: 4 (lower is better)
Translates to: NEPLRGWLIDPVAFRESWMTRTI*SFLGSR
Trigger: CCTGGACCCCAGGAATGAGCAGATTGTGCGAGTCAT...CCAGGACTCACGGAAAGCAACCGGATCTATCAGCCAGCCCCTAAGCGGCTCATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR GCA 90 bp GCAGTACTCTCCACACCAGACACCGGAGTCACACCCACCAGCTCTCTGCTCACTTTGGCTCTACTGCTGTaGTGTACCCTTTGGGAGGAT +
Preference number: 4 (lower is better)
Translates to: AVLSTPDTGVTPTSSLLTLALLL*CTLWED
Trigger: ATCCTCCCAAAGGGTACAGCACAGCAGTAGAGCCAA...AGTGAGCAGAGAGCTGGTGGGTGTGACTCCGGTGTCTGGTGTGGAGAGTACTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR GCA 90 bp AATGAGCCGCTTAGGGGCTGGCTGATAGATCCGGTTGCTTTCCGTGAGTCCTGGTGCCAGCACAGCCTGTaGAGAGCTTTCGCCAGTAAA +
Preference number: 4 (lower is better)
Translates to: NEPLRGWLIDPVAFRESWCQHSL*RAFASK
Trigger: TTTACTGGCGAAAGCTCTGCACAGGCTGTGCTGGCA...CCAGGACTCACGGAAAGCAACCGGATCTATCAGCCAGCCCCTAAGCGGCTCATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR CCA 90 bp CCATGGAGCAAAATCAGCCAAGTTCAGAAAGCCAAGTGCCACATTTCCTCTCACCCCACCAGCAGCCCCTaGGTGGAAGCCTTGGATGGC +
Preference number: 4 (lower is better)
Translates to: PWSKISQVQKAKCHISSHPTSSP*VEALDG
Trigger: GCCATCCAAGGCTTCCACCCAGGGGCTGCTGGTGGG...GTGAGAGGAAATGTGGCACTTGGCTTTCTGAACTTGGCTGATTTTGCTCCATGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000038381.14
ENSMUST00000077981.7
CDS-3UTR CCA 90 bp GCTGGGGGAGGCTACTGCTGCTTGCTGAACATTTCCAAAGTAAATCAGAAAACCCCCACCAGCAGCCCCTaGGTGGAAGCCTTGGATGGC +
Preference number: 4 (lower is better)
Translates to: AGGGYCCLLNISKVNQKTPTSSP*VEALDG
Trigger: GCCATCCAAGGCTTCCACCCAGGGGCTGCTGGTGGG...GGTTTTCTGATTTACTTTGGAAATGTTCAGCAAGCAGCAGTAGCCTCCCCCAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
CDS-3UTR CCA 90 bp GCAGTACTCTCCACACCAGACACCGGAGTCACACCCACCAGCTCTCTGCTCACTGCTGGAATAGGCATCTaGTGGCGTCTTGTTCTGGAA +
Preference number: 4 (lower is better)
Translates to: AVLSTPDTGVTPTSSLLTAGIGI*WRLVLE
Trigger: TTCCAGAACAAGACGCCACCAGATGCCTATTCCAGC...AGTGAGCAGAGAGCTGGTGGGTGTGACTCCGGTGTCTGGTGTGGAGAGTACTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
3UTR CAA 72 bp GACTTGAGCAGAGCTCCGTCGCCTCATCCTCTCTTATaGCACAGACGTCTTGCCTCACGCTCTCCAGCTCTT +
Preference number: 4 (lower is better)
Translates to: DLSRAPSPHPLL*HRRLASRSPAL
Trigger: AAGAGCTGGAGAGCGTGAGGCAAGACGTCTGTGCAATAAGAGAGGATGAGGCGACGGAGCTCTGCTCAAGTC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR TCA 90 bp AATGAGCCGCTTAGGGGCTGGCTGATAGATCCGGTTGCTTTCCGTGAGTCCTGGGGAAGACCTCCATCCTaGTCAGCAGGCTCATCATAT +
Preference number: 4 (lower is better)
Translates to: NEPLRGWLIDPVAFRESWGRPPS*SAGSSY
Trigger: ATATGATGAGCCTGCTGATCAGGATGGAGGTCTTCC...CCAGGACTCACGGAAAGCAACCGGATCTATCAGCCAGCCCCTAAGCGGCTCATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR GCA 90 bp AATGAGCCGCTTAGGGGCTGGCTGATAGATCCGGTTGCTTTCCGTGAGTCCTGGCCCTCTCGAATCTCTTaGAATCGCTGCCGGCTATTT +
Preference number: 4 (lower is better)
Translates to: NEPLRGWLIDPVAFRESWPSRIS*NRCRLF
Trigger: AAATAGCCGGCAGCGATTGCAAGAGATTCGAGAGGG...CCAGGACTCACGGAAAGCAACCGGATCTATCAGCCAGCCCCTAAGCGGCTCATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR GCA 90 bp AATGAGCCGCTTAGGGGCTGGCTGATAGATCCGGTTGCTTTCCGTGAGTCCTGGTTTCCTGGGGAGGTCTaGTTGATGACTCGCACAATC +
Preference number: 4 (lower is better)
Translates to: NEPLRGWLIDPVAFRESWFPGEV*LMTRTI
Trigger: GATTGTGCGAGTCATCAAGCAGACCTCCCCAGGAAA...CCAGGACTCACGGAAAGCAACCGGATCTATCAGCCAGCCCCTAAGCGGCTCATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR GCA 90 bp AATGAGCCGCTTAGGGGCTGGCTGATAGATCCGGTTGCTTTCCGTGAGTCCTGGTTGGCTCTACTGCTGTaGTGTACCCTTTGGGAGGAT +
Preference number: 4 (lower is better)
Translates to: NEPLRGWLIDPVAFRESWLALLL*CTLWED
Trigger: ATCCTCCCAAAGGGTACAGCACAGCAGTAGAGCCAA...CCAGGACTCACGGAAAGCAACCGGATCTATCAGCCAGCCCCTAAGCGGCTCATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR CCA 90 bp CATGGAGCAAAATCAGCCAAGTTCAGAAAGCCAAGTGCCACATTTCCTCTCACGCCAGCAGCCCCTGGGTaGAAGCCTTGGATGGCTGCT +
Preference number: 4 (lower is better)
Translates to: HGAKSAKFRKPSATFPLTPAAPG*KPWMAA
Trigger: AGCAGCCATCCAAGGCTTCCACCCAGGGGCTGCTGG...CGTGAGAGGAAATGTGGCACTTGGCTTTCTGAACTTGGCTGATTTTGCTCCATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038381.14
ENSMUST00000077981.7
CDS-3UTR CCA 90 bp CAGCCAAGTTCAGAAAGCCAAGTGCCACATTTCCTCTCACGTTCAGAATCAAGCCCAGCAGCCCCTGGGTaGAAGCCTTGGATGGCTGCT +
Preference number: 4 (lower is better)
Translates to: QPSSESQVPHFLSRSESSPAAPG*KPWMAA
Trigger: AGCAGCCATCCAAGGCTTCCACCCAGGGGCTGCTGG...GCTTGATTCTGAACGTGAGAGGAAATGTGGCACTTGGCTTTCTGAACTTGGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038381.14
ENSMUST00000077981.7
CDS-3UTR CCA 90 bp TCTCTTCTCTTCATCTCTGCTATTCTTGCGGACAGGCACCGGGGAGGTCTGAATGGAAGTGTCACTGTTTaGTCCCACCAGCAGCCCCTG +
Preference number: 4 (lower is better)
Translates to: SLLFISAILADRHRGGLNGSVTV*SHQQPL
Trigger: CAGGGGCTGCTGGTGGGACCAAACAGTGACACTTCC...ATTCAGACCTCCCCGGTGCCTGTCCGCAAGAATAGCAGAGATGAAGAGAAGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
CDS-3UTR CCA 90 bp AAGCACCTCCGGAGCGATGTAATTTGGTGTCCCGACAAGAGAATGTGCCAGGCAGTCCAAACTTCGGGGTaGCTCTCATTTGCTGCTGCC +
Preference number: 4 (lower is better)
Translates to: KHLRSDVIWCPDKRMCQAVQTSG*LSFAAA
Trigger: GGCAGCAGCAAATGAGAGCCACCCCGAAGTTTGGAC...TGCCTGGCACATTCTCTTGTCGGGACACCAAATTACATCGCTCCGGAGGTGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
CDS-3UTR CCA 90 bp CCCACAGCCACACCTGACAGCAGACAGGACTACGGAAATGGACAAAACGCTAGACACAGAGCCCAGCTTTaGCCATTTCCTGCTCCAGCT +
Preference number: 4 (lower is better)
Translates to: PTATPDSRQDYGNGQNARHRAQL*PFPAPA
Trigger: AGCTGGAGCAGGAAATGGCCAAAGCTGGGCTCTGTG...TCTAGCGTTTTGTCCATTTCCGTAGTCCTGTCTGCTGTCAGGTGTGGCTGTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR CCA 90 bp GGACCTGCTGTGAATGGCAAGATACGGTATTTTATACTAGAAACCCCTGCTCATGCGTGTCCCAGGCCTTaGCGCTCTCTCCGCTGGCCT +
Preference number: 4 (lower is better)
Translates to: GPAVNGKIRYFILETPAHACPRP*RSLRWP
Trigger: AGGCCAGCGGAGAGAGCGCCAAGGCCTGGGACACGC...ATGAGCAGGGGTTTCTAGTATAAAATACCGTATCTTGCCATTCACAGCAGGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR TCA 90 bp AATGAGCCGCTTAGGGGCTGGCTGATAGATCCGGTTGCTTTCCGTGAGTCCTGGAGGAGTAGTAGAGTTTaGCCACCCACTCATTGTCTG +
Preference number: 4 (lower is better)
Translates to: NEPLRGWLIDPVAFRESWRSSRV*PPTHCL
Trigger: CAGACAATGAGTGGGTGGTCAAACTCTACTACTCCT...CCAGGACTCACGGAAAGCAACCGGATCTATCAGCCAGCCCCTAAGCGGCTCATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR GCA 90 bp AGGACCTGCTGTGAATGGCAAGATACGGTATTTTATACTAGAAACCCCTGCTCACGTGCTCTGGATGCTTaGTGCTGGGGGAGGCCAGCG +
Preference number: 4 (lower is better)
Translates to: RTCCEWQDTVFYTRNPCSRALDA*CWGRPA
Trigger: CGCTGGCCTCCCCCAGCAGCAAGCATCCAGAGCACG...TGAGCAGGGGTTTCTAGTATAAAATACCGTATCTTGCCATTCACAGCAGGTCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR CCA 90 bp CATGGATGCAATTTGAGGTCATCCATGGAGCAAAATCAGCCAAGTTCAGAAAGCCCCACCAGCAGCCCCTaGGTGGAAGCCTTGGATGGC +
Preference number: 4 (lower is better)
Translates to: HGCNLRSSMEQNQPSSESPTSSP*VEALDG
Trigger: GCCATCCAAGGCTTCCACCCAGGGGCTGCTGGTGGG...GCTTTCTGAACTTGGCTGATTTTGCTCCATGGATGACCTCAAATTGCATCCATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000038381.14
ENSMUST00000077981.7
CDS-3UTR CCA 90 bp CCCACAGCCACACCTGACAGCAGACAGGACTACGGAAATGGACAAAACGCTAGACAATCTGCTCATTCCTaGGGTCCAGGTAGCCCATCT +
Preference number: 4 (lower is better)
Translates to: PTATPDSRQDYGNGQNARQSAHS*GPGSPS
Trigger: AGATGGGCTACCTGGACCCCAGGAATGAGCAGATTG...TCTAGCGTTTTGTCCATTTCCGTAGTCCTGTCTGCTGTCAGGTGTGGCTGTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR CCA 90 bp GAGGGCGAGAGAGAGCCACAAGTGGTTTACATAAAATTACAGGTGTTCAAATATGCCGAGTCACCGGGGTaGGCGCCAGGCCCTTTCCTG +
Preference number: 4 (lower is better)
Translates to: EGEREPQVVYIKLQVFKYAESPG*APGPFL
Trigger: CAGGAAAGGGCCTGGCGCCCACCCCGGTGACTCGGC...ATATTTGAACACCTGTAATTTTATGTAAACCACTTGTGGCTCTCTCTCGCCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR CCA 90 bp ACAAATGTTTACATTTGCCTCCCGAAGAACTCAGTCATATCCAAGACACACACACAGTGGCAGGTGCTGTaGGCGCAGCCACCCAGGCGG +
Preference number: 4 (lower is better)
Translates to: TNVYICLPKNSVISKTHTQWQVL*AQPPRR
Trigger: CCGCCTGGGTGGCTGCGCCCACAGCACCTGCCACTG...TGTGTGTGTCTTGGATATGACTGAGTTCTTCGGGAGGCAAATGTAAACATTTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR CCA 90 bp AGAACTGGGTTTCACAGAACCTCCTGGTTGGCTGAGAACACAGGAAGCAGGACCCTCCACAGCGACAGTTaGAAACATCGTCCCAGAGGT +
Preference number: 4 (lower is better)
Translates to: RTGFHRTSWLAENTGSRTLHSDS*KHRPRG
Trigger: ACCTCTGGGACGATGTTTCCAACTGTCGCTGTGGAG...GGTCCTGCTTCCTGTGTTCTCAGCCAACCAGGAGGTTCTGTGAAACCCAGTTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR CCA 90 bp AAAGAACTGGGTTTCACAGAACCTCCTGGTTGGCTGAGAACACAGGAAGCAGGACCACCGGGTCAAAATTaGAGGTGTCCATGGGGTGGC +
Preference number: 4 (lower is better)
Translates to: KELGFTEPPGWLRTQEAGPPGQN*RCPWGG
Trigger: GCCACCCCATGGACACCTCCAATTTTGACCCGGTGG...TCCTGCTTCCTGTGTTCTCAGCCAACCAGGAGGTTCTGTGAAACCCAGTTCTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR CCA 90 bp AGGACCTGCTGTGAATGGCAAGATACGGTATTTTATACTAGAAACCCCTGCTCACTGGATGCTTGCTGCTaGGGGAGGCCAGCGTGTCCC +
Preference number: 4 (lower is better)
Translates to: RTCCEWQDTVFYTRNPCSLDACC*GRPACP
Trigger: GGGACACGCTGGCCTCCCCCAGCAGCAAGCATCCAG...TGAGCAGGGGTTTCTAGTATAAAATACCGTATCTTGCCATTCACAGCAGGTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
3UTR CAA 72 bp TTTTTGTCTCTGCCAGCTTTGTCTCCCTTCGCACCTTaGTGGCTCTTGTCACTCCTGTCTTGCTCAGTGCCC +
Preference number: 4 (lower is better)
Translates to: FLSLPALSPFAP*WLLSLLSCSVP
Trigger: GGGCACTGAGCAAGACAGGAGTGACAAGAGCCACAAAGGTGCGAAGGGAGACAAAGCTGGCAGAGACAAAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
CDS-3UTR TCA 90 bp CAGCCAAGTTCAGAAAGCCAAGTGCCACATTTCCTCTCACGTTCAGAATCAAGCAGCTGCCGAAGTGCCTaGCTCGTTGGCAAAAGGCAG +
Preference number: 4 (lower is better)
Translates to: QPSSESQVPHFLSRSESSSCRSA*LVGKRQ
Trigger: CTGCCTTTTGCCAACGAGTCAGGCACTTCGGCAGCT...GCTTGATTCTGAACGTGAGAGGAAATGTGGCACTTGGCTTTCTGAACTTGGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038381.14
ENSMUST00000077981.7
CDS-3UTR TCA 90 bp TGCTGTCCTGTCTCATGTGGTTCCCTTTCTGGTAGTACTTGGAATTGTGAGTCCAGCTGCCGAAGTGCCTaGCTCGTTGGCAAAAGGCAG +
Preference number: 4 (lower is better)
Translates to: CCPVSCGSLSGSTWNCESSCRSA*LVGKRQ
Trigger: CTGCCTTTTGCCAACGAGTCAGGCACTTCGGCAGCT...GGACTCACAATTCCAAGTACTACCAGAAAGGGAACCACATGAGACAGGACAGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
CDS-3UTR TCA 90 bp ACCTCCCTAGGACTGTGCTTCTATAAATCCACTAACCAAAGAGTTCCGATTTCATTGGGAGGATGCTGGTaGGCCTGGGCACCGTGGGTG +
Preference number: 4 (lower is better)
Translates to: TSLGLCFYKSTNQRVPISLGGCW*AWAPWV
Trigger: CACCCACGGTGCCCAGGCTCACCAGCATCCTCCCAA...TGAAATCGGAACTCTTTGGTTAGTGGATTTATAGAAGCACAGTCCTAGGGAGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR TCA 90 bp AAAGAACTGGGTTTCACAGAACCTCCTGGTTGGCTGAGAACACAGGAAGCAGGACAGGTTGTGGGTTGTTaGAGGAGTTGGTCCTGCTGG +
Preference number: 4 (lower is better)
Translates to: KELGFTEPPGWLRTQEAGQVVGC*RSWSCW
Trigger: CCAGCAGGACCAACTCCTTCAACAACCCACAACCTG...TCCTGCTTCCTGTGTTCTCAGCCAACCAGGAGGTTCTGTGAAACCCAGTTCTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR TCA 90 bp ACCTCCCTAGGACTGTGCTTCTATAAATCCACTAACCAAAGAGTTCCGATTTCAGTTGGGGGCGGGCAGTaGGGGCTCAGGTTGTGGGTT +
Preference number: 4 (lower is better)
Translates to: TSLGLCFYKSTNQRVPISVGGGQ*GLRLWV
Trigger: AACCCACAACCTGAGCCCTCACTGCCCGCCCCCAAC...TGAAATCGGAACTCTTTGGTTAGTGGATTTATAGAAGCACAGTCCTAGGGAGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR TCA 90 bp AATGAGCCGCTTAGGGGCTGGCTGATAGATCCGGTTGCTTTCCGTGAGTCCTGGTCTGTCAGCTTAATATaGCCATCCAGGTCGATGAGT +
Preference number: 4 (lower is better)
Translates to: NEPLRGWLIDPVAFRESWSVSLI*PSRSMS
Trigger: ACTCATCGACCTGGATGGTCATATTAAGCTGACAGA...CCAGGACTCACGGAAAGCAACCGGATCTATCAGCCAGCCCCTAAGCGGCTCATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR GCA 90 bp CAGACGTCTTGCCTCACGCTCTCCAGCTCTTCCTTTTCTAGCTGTGGACAAGTGCCCTCTCGAATCTCTTaGAATCGCTGCCGGCTATTT +
Preference number: 4 (lower is better)
Translates to: QTSCLTLSSSSFSSCGQVPSRIS*NRCRLF
Trigger: AAATAGCCGGCAGCGATTGCAAGAGATTCGAGAGGG...CACTTGTCCACAGCTAGAAAAGGAAGAGCTGGAGAGCGTGAGGCAAGACGTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR GCA 90 bp ACCTCCCTAGGACTGTGCTTCTATAAATCCACTAACCAAAGAGTTCCGATTTCACGGCATCTCCTCCAGTaGGGCGGGGCCCTCGTAGTT +
Preference number: 4 (lower is better)
Translates to: TSLGLCFYKSTNQRVPISRHLLQ*GGALVV
Trigger: AACTACGAGGGCCCCGCCGCACTGGAGGAGATGCCG...TGAAATCGGAACTCTTTGGTTAGTGGATTTATAGAAGCACAGTCCTAGGGAGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR GCA 90 bp AATGAGCCGCTTAGGGGCTGGCTGATAGATCCGGTTGCTTTCCGTGAGTCCTGGTCTTCTCTTCATCTCTaGTATTCTTGCGGACAGGCA +
Preference number: 4 (lower is better)
Translates to: NEPLRGWLIDPVAFRESWSSLHL*YSCGQA
Trigger: TGCCTGTCCGCAAGAATAGCAGAGATGAAGAGAAGA...CCAGGACTCACGGAAAGCAACCGGATCTATCAGCCAGCCCCTAAGCGGCTCATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR GCA 90 bp AAAGAACTGGGTTTCACAGAACCTCCTGGTTGGCTGAGAACACAGGAAGCAGGACACCAGTCACAGAGCTaGGTGTACCCTTTGCGGAGA +
Preference number: 4 (lower is better)
Translates to: KELGFTEPPGWLRTQEAGHQSQS*VYPLRR
Trigger: TCTCCGCAAAGGGTACACGCAGCTCTGTGACTGGTG...TCCTGCTTCCTGTGTTCTCAGCCAACCAGGAGGTTCTGTGAAACCCAGTTCTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR GCA 90 bp AGGACCTGCTGTGAATGGCAAGATACGGTATTTTATACTAGAAACCCCTGCTCATGCCTTGAGGTCATCTaGCCCATCCCTGCCCAGGCG +
Preference number: 4 (lower is better)
Translates to: RTCCEWQDTVFYTRNPCSCLEVI*PIPAQA
Trigger: CGCCTGGGCAGGGATGGGGCAGATGACCTCAAGGCA...TGAGCAGGGGTTTCTAGTATAAAATACCGTATCTTGCCATTCACAGCAGGTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR GCA 90 bp GGACCTGCTGTGAATGGCAAGATACGGTATTTTATACTAGAAACCCCTGCTCATAAGGCGTGCTCTGGATaGTTGCTGCTGGGGGAGGCC +
Preference number: 4 (lower is better)
Translates to: GPAVNGKIRYFILETPAHKACSG*LLLGEA
Trigger: GGCCTCCCCCAGCAGCAAGCATCCAGAGCACGCCTT...ATGAGCAGGGGTTTCTAGTATAAAATACCGTATCTTGCCATTCACAGCAGGTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR CCA 90 bp ACCAGCTCTCTGCTCACTCTTTCTAGGAACTATAATATGCAAAGGAGAAAATACGCCGAGTCACCGGGGTaGGCGCCAGGCCCTTTCCTG +
Preference number: 4 (lower is better)
Translates to: TSSLLTLSRNYNMQRRKYAESPG*APGPFL
Trigger: CAGGAAAGGGCCTGGCGCCCACCCCGGTGACTCGGC...GTATTTTCTCCTTTGCATATTATAGTTCCTAGAAAGAGTGAGCAGAGAGCTGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR CCA 90 bp GAGGGCGAGAGAGAGCCACAAGTGGTTTACATAAAATTACAGGTGTTCAAATATGCGGGAGGGCCACCCTaGGCCTTGGCCATGCTGGAA +
Preference number: 4 (lower is better)
Translates to: EGEREPQVVYIKLQVFKYAGGPP*ALAMLE
Trigger: TTCCAGCATGGCCAAGGCCCAGGGTGGCCCTCCCGC...ATATTTGAACACCTGTAATTTTATGTAAACCACTTGTGGCTCTCTCTCGCCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR TCA 90 bp TTTGAGGTCATCCATGGAGCAAAATCAGCCAAGTTCAGAAAGCCAAGTGCCACAAGCTGCCGAAGTGCCTaGCTCGTTGGCAAAAGGCAG +
Preference number: 4 (lower is better)
Translates to: FEVIHGAKSAKFRKPSATSCRSA*LVGKRQ
Trigger: CTGCCTTTTGCCAACGAGTCAGGCACTTCGGCAGCT...TGTGGCACTTGGCTTTCTGAACTTGGCTGATTTTGCTCCATGGATGACCTCAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038381.14
ENSMUST00000077981.7
CDS-3UTR TCA 90 bp CCAAGTTCAGAAAGCCAAGTGCCACATTTCCTCTCACGTTCAGAATCAAGCCCTGCATTCACCAACTCCTaGAGCATCTGCCGGTTCACC +
Preference number: 4 (lower is better)
Translates to: PSSESQVPHFLSRSESSPAFTNS*SICRFT
Trigger: GGTGAACCGGCAGATGCTTCAGGAGTTGGTGAATGC...AGGGCTTGATTCTGAACGTGAGAGGAAATGTGGCACTTGGCTTTCTGAACTTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038381.14
ENSMUST00000077981.7
CDS-3UTR TCA 90 bp ATAATACTAAGTAACGGGTGCACTGTGCTAAGAACCTTGGTGAGAAGATTTGGCTGTCCATGGGGTGGCTaGTGGTGGGGACGTAGGGTG +
Preference number: 4 (lower is better)
Translates to: IILSNGCTVLRTLVRRFGCPWGG*WWGRRV
Trigger: CACCCTACGTCCCCACCATCAGCCACCCCATGGACA...GCCAAATCTTCTCACCAAGGTTCTTAGCACAGTGCACCCGTTACTTAGTATTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR GCA 90 bp AAAGAACTGGGTTTCACAGAACCTCCTGGTTGGCTGAGAACACAGGAAGCAGGAATGACTCGCACAATCTaGTCATTCCTGGGGTCCAGG +
Preference number: 4 (lower is better)
Translates to: KELGFTEPPGWLRTQEAGMTRTI*SFLGSR
Trigger: CCTGGACCCCAGGAATGAGCAGATTGTGCGAGTCAT...TCCTGCTTCCTGTGTTCTCAGCCAACCAGGAGGTTCTGTGAAACCCAGTTCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR GCA 90 bp AGAACCTACCACATCAAACTATGTCAGAGCGCTGTAAATAACACGGCATTACTAGCCGCCGGCTTGTGGTaGGAGGCAGTGTACAGCCCA +
Preference number: 4 (lower is better)
Translates to: RTYHIKLCQSAVNNTALLAAGLW*EAVYSP
Trigger: TGGGCTGTACACTGCCTCGCACCACAAGCCGGCGGC...TAGTAATGCCGTGTTATTTACAGCGCTCTGACATAGTTTGATGTGGTAGGTTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR GCA 90 bp ACAAATGTTTACATTTGCCTCCCGAAGAACTCAGTCATATCCAAGACACACACACAGCGAGTCGCGGCGTaGCAGTGGAGCTGCAGACCA +
Preference number: 4 (lower is better)
Translates to: TNVYICLPKNSVISKTHTQRVAA*QWSCRP
Trigger: TGGTCTGCAGCTCCACTGGCACGCCGCGACTCGCTG...TGTGTGTGTCTTGGATATGACTGAGTTCTTCGGGAGGCAAATGTAAACATTTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR GCA 90 bp GAGGGCGAGAGAGAGCCACAAGTGGTTTACATAAAATTACAGGTGTTCAAATATCAGCGAGTCGCGGCGTaGCAGTGGAGCTGCAGACCA +
Preference number: 4 (lower is better)
Translates to: EGEREPQVVYIKLQVFKYQRVAA*QWSCRP
Trigger: TGGTCTGCAGCTCCACTGGCACGCCGCGACTCGCTG...ATATTTGAACACCTGTAATTTTATGTAAACCACTTGTGGCTCTCTCTCGCCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR GCA 90 bp ACACCTGACAGCAGACAGGACTACGGAAATGGACAAAACGCTAGAATTATGTCACCTCGCAGACTCTGCTaGACACTGGTGCACAGGCTG +
Preference number: 4 (lower is better)
Translates to: TPDSRQDYGNGQNARIMSPRRLC*TLVHRL
Trigger: CAGCCTGTGCACCAGTGTGCAGCAGAGTCTGCGAGG...TGACATAATTCTAGCGTTTTGTCCATTTCCGTAGTCCTGTCTGCTGTCAGGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR GCA 90 bp GAGGGCGAGAGAGAGCCACAAGTGGTTTACATAAAATTACAGGTGTTCAAATATGCCAGGCACCTCTGGTaGTGCTTCTGCGCCCTCTGC +
Preference number: 4 (lower is better)
Translates to: EGEREPQVVYIKLQVFKYARHLW*CFCALC
Trigger: GCAGAGGGCGCAGAAGCAGCACCAGAGGTGCCTGGC...ATATTTGAACACCTGTAATTTTATGTAAACCACTTGTGGCTCTCTCTCGCCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR GCA 90 bp ACCTGCTGTGAATGGCAAGATACGGTATTTTATACTAGAAACCCCTGCTCATGCGCGCTGAGCCTCACCTaGGTAGGGATATGCAGCGTG +
Preference number: 4 (lower is better)
Translates to: TCCEWQDTVFYTRNPCSCALSLT*VGICSV
Trigger: CACGCTGCATATCCCTACGCAGGTGAGGCTCAGCGC...GCATGAGCAGGGGTTTCTAGTATAAAATACCGTATCTTGCCATTCACAGCAGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR GCA 90 bp ACCTCCCTAGGACTGTGCTTCTATAAATCCACTAACCAAAGAGTTCCGATTTCACCGCTTACCTTCAGCTaGGTCTCTGTGGGGGTGGGG +
Preference number: 4 (lower is better)
Translates to: TSLGLCFYKSTNQRVPISPLTFS*VSVGVG
Trigger: CCCCACCCCCACAGAGACGCAGCTGAAGGTAAGCGG...TGAAATCGGAACTCTTTGGTTAGTGGATTTATAGAAGCACAGTCCTAGGGAGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR CCA 90 bp ACCTCCCTAGGACTGTGCTTCTATAAATCCACTAACCAAAGAGTTCCGATTTCACCAGCAGCCCCTGGGTaGAAGCCTTGGATGGCTGCT +
Preference number: 4 (lower is better)
Translates to: TSLGLCFYKSTNQRVPISPAAPG*KPWMAA
Trigger: AGCAGCCATCCAAGGCTTCCACCCAGGGGCTGCTGG...TGAAATCGGAACTCTTTGGTTAGTGGATTTATAGAAGCACAGTCCTAGGGAGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR CCA 90 bp GAGGGCGAGAGAGAGCCACAAGTGGTTTACATAAAATTACAGGTGTTCAAATATCCCACCAGCAGCCCCTaGGTGGAAGCCTTGGATGGC +
Preference number: 4 (lower is better)
Translates to: EGEREPQVVYIKLQVFKYPTSSP*VEALDG
Trigger: GCCATCCAAGGCTTCCACCCAGGGGCTGCTGGTGGG...ATATTTGAACACCTGTAATTTTATGTAAACCACTTGTGGCTCTCTCTCGCCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR CCA 90 bp AGTTCAGAAAGCCAAGTGCCACATTTCCTCTCACGTTCAGAATCAAGCCCTAGTGGAAGTGTCACTGTTTaGTCCCACCAGCAGCCCCTG +
Preference number: 4 (lower is better)
Translates to: SSESQVPHFLSRSESSPSGSVTV*SHQQPL
Trigger: CAGGGGCTGCTGGTGGGACCAAACAGTGACACTTCC...ACTAGGGCTTGATTCTGAACGTGAGAGGAAATGTGGCACTTGGCTTTCTGAACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038381.14
ENSMUST00000077981.7
CDS-3UTR CCA 90 bp CAGCCAAGTTCAGAAAGCCAAGTGCCACATTTCCTCTCACGTTCAGAATCAAGCGTCCAAACTTCGGGGTaGCTCTCATTTGCTGCTGCC +
Preference number: 4 (lower is better)
Translates to: QPSSESQVPHFLSRSESSVQTSG*LSFAAA
Trigger: GGCAGCAGCAAATGAGAGCCACCCCGAAGTTTGGAC...GCTTGATTCTGAACGTGAGAGGAAATGTGGCACTTGGCTTTCTGAACTTGGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038381.14
ENSMUST00000077981.7
CDS-3UTR CCA 90 bp ACCTGCTGTGAATGGCAAGATACGGTATTTTATACTAGAAACCCCTGCTCATGCCGCCAGGCCCTTTCCTaGGGAGGTCTGCTTGATGAC +
Preference number: 4 (lower is better)
Translates to: TCCEWQDTVFYTRNPCSCRQALS*GGLLDD
Trigger: GTCATCAAGCAGACCTCCCCAGGAAAGGGCCTGGCG...GCATGAGCAGGGGTTTCTAGTATAAAATACCGTATCTTGCCATTCACAGCAGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR CCA 90 bp ACCAGCTCTCTGCTCACTCTTTCTAGGAACTATAATATGCAAAGGAGAAAATACGCGGGAGGGCCACCCTaGGCCTTGGCCATGCTGGAA +
Preference number: 4 (lower is better)
Translates to: TSSLLTLSRNYNMQRRKYAGGPP*ALAMLE
Trigger: TTCCAGCATGGCCAAGGCCCAGGGTGGCCCTCCCGC...GTATTTTCTCCTTTGCATATTATAGTTCCTAGAAAGAGTGAGCAGAGAGCTGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR CCA 90 bp TTTGAGGTCATCCATGGAGCAAAATCAGCCAAGTTCAGAAAGCCAAGTGCCACACCAGGTGCTGCTGTTTaGGAGATGGGAGGGACAGAC +
Preference number: 4 (lower is better)
Translates to: FEVIHGAKSAKFRKPSATPGAAV*EMGGTD
Trigger: GTCTGTCCCTCCCATCTCCCAAACAGCAGCACCTGG...TGTGGCACTTGGCTTTCTGAACTTGGCTGATTTTGCTCCATGGATGACCTCAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038381.14
ENSMUST00000077981.7
CDS-3UTR TCA 90 bp TCAGCCAAGTTCAGAAAGCCAAGTGCCACATTTCCTCTCACGTTCAGAATCAAGGCATTCACCAACTCCTaGAGCATCTGCCGGTTCACC +
Preference number: 4 (lower is better)
Translates to: SAKFRKPSATFPLTFRIKAFTNS*SICRFT
Trigger: GGTGAACCGGCAGATGCTTCAGGAGTTGGTGAATGC...CTTGATTCTGAACGTGAGAGGAAATGTGGCACTTGGCTTTCTGAACTTGGCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038381.14
ENSMUST00000077981.7
CDS-3UTR TCA 90 bp ACCTCCCTAGGACTGTGCTTCTATAAATCCACTAACCAAAGAGTTCCGATTTCAACGCTCTTCACAGGGTaGAGGATGTGTGCGGCCGTC +
Preference number: 4 (lower is better)
Translates to: TSLGLCFYKSTNQRVPISTLFTG*RMCAAV
Trigger: GACGGCCGCACACATCCTTCACCCTGTGAAGAGCGT...TGAAATCGGAACTCTTTGGTTAGTGGATTTATAGAAGCACAGTCCTAGGGAGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR TCA 90 bp GGACCTGCTGTGAATGGCAAGATACGGTATTTTATACTAGAAACCCCTGCTCATGCTGTAGCCTCCGGCTaGCCTTCTGCTGGTAGGTTT +
Preference number: 4 (lower is better)
Translates to: GPAVNGKIRYFILETPAHAVASG*PSAGRF
Trigger: AAACCTACCAGCAGAAGGTCAGCCGGAGGCTACAGC...ATGAGCAGGGGTTTCTAGTATAAAATACCGTATCTTGCCATTCACAGCAGGTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR GCA 90 bp AGTTCAGAAAGCCAAGTGCCACATTTCCTCTCACGTTCAGAATCAAGCCCTAGTGCCTGGAGGCATCTTTaGTCCCCAGGACTTTGGCAT +
Preference number: 4 (lower is better)
Translates to: SSESQVPHFLSRSESSPSAWRHL*SPGLWH
Trigger: ATGCCAAAGTCCTGGGGAGCAAAGATGCCTCCAGGC...ACTAGGGCTTGATTCTGAACGTGAGAGGAAATGTGGCACTTGGCTTTCTGAACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038381.14
ENSMUST00000077981.7
CDS-3UTR CCA 90 bp GGACCTGCTGTGAATGGCAAGATACGGTATTTTATACTAGAAACCCCTGCTCATGGAAGTGTCACTGTTTaGTCCCACCAGCAGCCCCTG +
Preference number: 4 (lower is better)
Translates to: GPAVNGKIRYFILETPAHGSVTV*SHQQPL
Trigger: CAGGGGCTGCTGGTGGGACCAAACAGTGACACTTCC...ATGAGCAGGGGTTTCTAGTATAAAATACCGTATCTTGCCATTCACAGCAGGTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR CCA 90 bp GGATGCAATTTGAGGTCATCCATGGAGCAAAATCAGCCAAGTTCAGAAAGCCAAGGAAGTGTCACTGTTTaGTCCCACCAGCAGCCCCTG +
Preference number: 4 (lower is better)
Translates to: GCNLRSSMEQNQPSSESQGSVTV*SHQQPL
Trigger: CAGGGGCTGCTGGTGGGACCAAACAGTGACACTTCC...TTGGCTTTCTGAACTTGGCTGATTTTGCTCCATGGATGACCTCAAATTGCATCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038381.14
ENSMUST00000077981.7
CDS-3UTR CCA 90 bp CCCACAGCCACACCTGACAGCAGACAGGACTACGGAAATGGACAAAACGCTAGAATAAAGCCCATCTTGTaGACACTTTCAATGGCCAGG +
Preference number: 4 (lower is better)
Translates to: PTATPDSRQDYGNGQNARIKPIL*TLSMAR
Trigger: CCTGGCCATTGAAAGTGTCCACAAGATGGGCTTTAT...TCTAGCGTTTTGTCCATTTCCGTAGTCCTGTCTGCTGTCAGGTGTGGCTGTGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR CCA 90 bp GGAGCAAAATCAGCCAAGTTCAGAAAGCCAAGTGCCACATTTCCTCTCACGTTCAGATCTTCCACAGCCTaGAACACAGGCGATCAGCCA +
Preference number: 4 (lower is better)
Translates to: GAKSAKFRKPSATFPLTFRSSTA*NTGDQP
Trigger: TGGCTGATCGCCTGTGTTCCAGGCTGTGGAAGATCT...GAACGTGAGAGGAAATGTGGCACTTGGCTTTCTGAACTTGGCTGATTTTGCTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038381.14
CDS-3UTR CCA 90 bp CAAAATCAGCCAAGTTCAGAAAGCCAAGTGCCACATTTCCTCTCACGTTCAGAACCAGGTGCTGCTGTTTaGGAGATGGGAGGGACAGAC +
Preference number: 4 (lower is better)
Translates to: QNQPSSESQVPHFLSRSEPGAAV*EMGGTD
Trigger: GTCTGTCCCTCCCATCTCCCAAACAGCAGCACCTGG...TTCTGAACGTGAGAGGAAATGTGGCACTTGGCTTTCTGAACTTGGCTGATTTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038381.14
ENSMUST00000077981.7
3UTR CAA 72 bp CTCTGGCTCATTCCAGCTGGGGGAGGCTACTGCTGCTaGCTGAACATTTCCAAAGTAAATCAGAAAACCAGG +
Preference number: 4 (lower is better)
Translates to: LWLIPAGGGYCC*LNISKVNQKTR
Trigger: CCTGGTTTTCTGATTTACTTTGGAAATGTTCAGCAAGCAGCAGTAGCCTCCCCCAGCTGGAATGAGCCAGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
CDS-3UTR TCA 90 bp ACCTCCCTAGGACTGTGCTTCTATAAATCCACTAACCAAAGAGTTCCGATTTCAAGCTGCCGAAGTGCCTaGCTCGTTGGCAAAAGGCAG +
Preference number: 4 (lower is better)
Translates to: TSLGLCFYKSTNQRVPISSCRSA*LVGKRQ
Trigger: CTGCCTTTTGCCAACGAGTCAGGCACTTCGGCAGCT...TGAAATCGGAACTCTTTGGTTAGTGGATTTATAGAAGCACAGTCCTAGGGAGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR TCA 90 bp ACCTGCTGTGAATGGCAAGATACGGTATTTTATACTAGAAACCCCTGCTCATGCCGTACAAGTCAGCATTaGGGCTGTTCCTGGACGGTG +
Preference number: 4 (lower is better)
Translates to: TCCEWQDTVFYTRNPCSCRTSQH*GCSWTV
Trigger: CACCGTCCAGGAACAGCCTCAATGCTGACTTGTACG...GCATGAGCAGGGGTTTCTAGTATAAAATACCGTATCTTGCCATTCACAGCAGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR GCA 90 bp ACTAAAGAGACAGCTGACGAGGGGTTCACTCTGTTCTACTCTGCCACATTCTTGCCCTCTCGAATCTCTTaGAATCGCTGCCGGCTATTT +
Preference number: 4 (lower is better)
Translates to: TKETADEGFTLFYSATFLPSRIS*NRCRLF
Trigger: AAATAGCCGGCAGCGATTGCAAGAGATTCGAGAGGG...CAAGAATGTGGCAGAGTAGAACAGAGTGAACCCCTCGTCAGCTGTCTCTTTAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
CDS-3UTR GCA 90 bp GGACCTGCTGTGAATGGCAAGATACGGTATTTTATACTAGAAACCCCTGCTCATGCCTGGAGGCATCTTTaGTCCCCAGGACTTTGGCAT +
Preference number: 4 (lower is better)
Translates to: GPAVNGKIRYFILETPAHAWRHL*SPGLWH
Trigger: ATGCCAAAGTCCTGGGGAGCAAAGATGCCTCCAGGC...ATGAGCAGGGGTTTCTAGTATAAAATACCGTATCTTGCCATTCACAGCAGGTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR GCA 90 bp CCATGGATGCAATTTGAGGTCATCCATGGAGCAAAATCAGCCAAGTTCAGAAAGGCCTGGAGGCATCTTTaGTCCCCAGGACTTTGGCAT +
Preference number: 4 (lower is better)
Translates to: PWMQFEVIHGAKSAKFRKAWRHL*SPGLWH
Trigger: ATGCCAAAGTCCTGGGGAGCAAAGATGCCTCCAGGC...CTTTCTGAACTTGGCTGATTTTGCTCCATGGATGACCTCAAATTGCATCCATGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038381.14
ENSMUST00000077981.7
CDS-3UTR GCA 90 bp GAATACTGTAAGTCACAATACAAGCACAGCAGACTTCAGAATATGCCATTCATACGGCATCTCCTCCAGTaGGGCGGGGCCCTCGTAGTT +
Preference number: 4 (lower is better)
Translates to: EYCKSQYKHSRLQNMPFIRHLLQ*GGALVV
Trigger: AACTACGAGGGCCCCGCCGCACTGGAGGAGATGCCG...TATGAATGGCATATTCTGAAGTCTGCTGTGCTTGTATTGTGACTTACAGTATTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR GCA 90 bp ACCTCCCTAGGACTGTGCTTCTATAAATCCACTAACCAAAGAGTTCCGATTTCAGCTTTGGCCATTTCCTaGTCCAGCTGTAGCCTCCGG +
Preference number: 4 (lower is better)
Translates to: TSLGLCFYKSTNQRVPISALAIS*SSCSLR
Trigger: CCGGAGGCTACAGCTGGAGCAGGAAATGGCCAAAGC...TGAAATCGGAACTCTTTGGTTAGTGGATTTATAGAAGCACAGTCCTAGGGAGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR GCA 90 bp ACCTCCCTAGGACTGTGCTTCTATAAATCCACTAACCAAAGAGTTCCGATTTCACCCGACAAGAGAATGTaGCAGGCACCTCTGGTGCTG +
Preference number: 4 (lower is better)
Translates to: TSLGLCFYKSTNQRVPISPDKRM*QAPLVL
Trigger: CAGCACCAGAGGTGCCTGGCACATTCTCTTGTCGGG...TGAAATCGGAACTCTTTGGTTAGTGGATTTATAGAAGCACAGTCCTAGGGAGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR GCA 90 bp ACAAATGTTTACATTTGCCTCCCGAAGAACTCAGTCATATCCAAGACACACACATCTCCGCTGGCCTCGTaGCAGGGGCTTTCTTCATCC +
Preference number: 4 (lower is better)
Translates to: TNVYICLPKNSVISKTHTSPLAS*QGLSSS
Trigger: GGATGAAGAAAGCCCCTGGCACGAGGCCAGCGGAGA...TGTGTGTGTCTTGGATATGACTGAGTTCTTCGGGAGGCAAATGTAAACATTTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR GCA 90 bp GCAAAATCAGCCAAGTTCAGAAAGCCAAGTGCCACATTTCCTCTCACGTTCAGACACGCACCAGGAATATaGATCTGGTCACATCCCGCA +
Preference number: 4 (lower is better)
Translates to: AKSAKFRKPSATFPLTFRHAPGI*IWSHPA
Trigger: TGCGGGATGTGACCAGATGCATATTCCTGGTGCGTG...TCTGAACGTGAGAGGAAATGTGGCACTTGGCTTTCTGAACTTGGCTGATTTTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000077981.7
CDS-3UTR CCA 90 bp ACCAGCTCTCTGCTCACTCTTTCTAGGAACTATAATATGCAAAGGAGAAAATACCCAGCAGCCCCTGGGTaGAAGCCTTGGATGGCTGCT +
Preference number: 4 (lower is better)
Translates to: TSSLLTLSRNYNMQRRKYPAAPG*KPWMAA
Trigger: AGCAGCCATCCAAGGCTTCCACCCAGGGGCTGCTGG...GTATTTTCTCCTTTGCATATTATAGTTCCTAGAAAGAGTGAGCAGAGAGCTGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR CCA 90 bp AGGACCTGCTGTGAATGGCAAGATACGGTATTTTATACTAGAAACCCCTGCTCAGTCCAAACTTCGGGGTaGCTCTCATTTGCTGCTGCC +
Preference number: 4 (lower is better)
Translates to: RTCCEWQDTVFYTRNPCSVQTSG*LSFAAA
Trigger: GGCAGCAGCAAATGAGAGCCACCCCGAAGTTTGGAC...TGAGCAGGGGTTTCTAGTATAAAATACCGTATCTTGCCATTCACAGCAGGTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR CCA 90 bp CCATGGATGCAATTTGAGGTCATCCATGGAGCAAAATCAGCCAAGTTCAGAAAGGTCCAAACTTCGGGGTaGCTCTCATTTGCTGCTGCC +
Preference number: 4 (lower is better)
Translates to: PWMQFEVIHGAKSAKFRKVQTSG*LSFAAA
Trigger: GGCAGCAGCAAATGAGAGCCACCCCGAAGTTTGGAC...CTTTCTGAACTTGGCTGATTTTGCTCCATGGATGACCTCAAATTGCATCCATGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038381.14
ENSMUST00000077981.7
CDS-3UTR CCA 90 bp GAGGGCGAGAGAGAGCCACAAGTGGTTTACATAAAATTACAGGTGTTCAAATATCGCCAGGCCCTTTCCTaGGGAGGTCTGCTTGATGAC +
Preference number: 4 (lower is better)
Translates to: EGEREPQVVYIKLQVFKYRQALS*GGLLDD
Trigger: GTCATCAAGCAGACCTCCCCAGGAAAGGGCCTGGCG...ATATTTGAACACCTGTAATTTTATGTAAACCACTTGTGGCTCTCTCTCGCCCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR CCA 90 bp ACAAATGTTTACATTTGCCTCCCGAAGAACTCAGTCATATCCAAGACACACACATCAGCTGCGTCTCTGTaGGGGTGGGGGCCAAGAAAG +
Preference number: 4 (lower is better)
Translates to: TNVYICLPKNSVISKTHTSAASL*GWGPRK
Trigger: CTTTCTTGGCCCCCACCCCCACAGAGACGCAGCTGA...TGTGTGTGTCTTGGATATGACTGAGTTCTTCGGGAGGCAAATGTAAACATTTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR CCA 90 bp GAGGGCGAGAGAGAGCCACAAGTGGTTTACATAAAATTACAGGTGTTCAAATATTCAGCTGCGTCTCTGTaGGGGTGGGGGCCAAGAAAG +
Preference number: 4 (lower is better)
Translates to: EGEREPQVVYIKLQVFKYSAASL*GWGPRK
Trigger: CTTTCTTGGCCCCCACCCCCACAGAGACGCAGCTGA...ATATTTGAACACCTGTAATTTTATGTAAACCACTTGTGGCTCTCTCTCGCCCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR TCA 90 bp ACCTCCCTAGGACTGTGCTTCTATAAATCCACTAACCAAAGAGTTCCGATTTCAGCATTCACCAACTCCTaGAGCATCTGCCGGTTCACC +
Preference number: 4 (lower is better)
Translates to: TSLGLCFYKSTNQRVPISAFTNS*SICRFT
Trigger: GGTGAACCGGCAGATGCTTCAGGAGTTGGTGAATGC...TGAAATCGGAACTCTTTGGTTAGTGGATTTATAGAAGCACAGTCCTAGGGAGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR TCA 90 bp ACCTCCCTAGGACTGTGCTTCTATAAATCCACTAACCAAAGAGTTCCGATTTCACGTACAAGTCAGCATTaGGGCTGTTCCTGGACGGTG +
Preference number: 4 (lower is better)
Translates to: TSLGLCFYKSTNQRVPISRTSQH*GCSWTV
Trigger: CACCGTCCAGGAACAGCCTCAATGCTGACTTGTACG...TGAAATCGGAACTCTTTGGTTAGTGGATTTATAGAAGCACAGTCCTAGGGAGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR TCA 90 bp ACCTCCCTAGGACTGTGCTTCTATAAATCCACTAACCAAAGAGTTCCGATTTCACAGGTTGTGGGTTGTTaGAGGAGTTGGTCCTGCTGG +
Preference number: 4 (lower is better)
Translates to: TSLGLCFYKSTNQRVPISQVVGC*RSWSCW
Trigger: CCAGCAGGACCAACTCCTTCAACAACCCACAACCTG...TGAAATCGGAACTCTTTGGTTAGTGGATTTATAGAAGCACAGTCCTAGGGAGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR TCA 90 bp TCAGCCAAGTTCAGAAAGCCAAGTGCCACATTTCCTCTCACGTTCAGAATCAAGTTTCACCCCAGCACTTaGGAGGCTGAGGCAAACATA +
Preference number: 4 (lower is better)
Translates to: SAKFRKPSATFPLTFRIKFHPST*EAEANI
Trigger: TATGTTTGCCTCAGCCTCTCAAGTGCTGGGGTGAAA...CTTGATTCTGAACGTGAGAGGAAATGTGGCACTTGGCTTTCTGAACTTGGCTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038381.14
CDS-3UTR GCA 90 bp ACCTCCCTAGGACTGTGCTTCTATAAATCCACTAACCAAAGAGTTCCGATTTCATGCTTCTGCGCCCTCTaGTCCAGGGTCTTTAACCTG +
Preference number: 4 (lower is better)
Translates to: TSLGLCFYKSTNQRVPISCFCAL*SRVFNL
Trigger: CAGGTTAAAGACCCTGGAGCAGAGGGCGCAGAAGCA...TGAAATCGGAACTCTTTGGTTAGTGGATTTATAGAAGCACAGTCCTAGGGAGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR GCA 90 bp GCACAGCAGACTTCAGAATATGCCATTCATACAAATGTAAACCAGACACAGGAATTGATCACCTTCAGCTaGGTCTCTGTGGGGGTGGGG +
Preference number: 4 (lower is better)
Translates to: AQQTSEYAIHTNVNQTQELITFS*VSVGVG
Trigger: CCCCACCCCCACAGAGACGCAGCTGAAGGTGATCAA...TTCCTGTGTCTGGTTTACATTTGTATGAATGGCATATTCTGAAGTCTGCTGTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR GCA 90 bp GAATACTGTAAGTCACAATACAAGCACAGCAGACTTCAGAATATGCCATTCATAGCTCTGGATGCTTGCTaGTGGGGGAGGCCAGCGTGT +
Preference number: 4 (lower is better)
Translates to: EYCKSQYKHSRLQNMPFIALDAC*WGRPAC
Trigger: ACACGCTGGCCTCCCCCAGCAGCAAGCATCCAGAGC...TATGAATGGCATATTCTGAAGTCTGCTGTGCTTGTATTGTGACTTACAGTATTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR CCA 90 bp GAGGGCGAGAGAGAGCCACAAGTGGTTTACATAAAATTACAGGTGTTCAAATATGGAAGTGTCACTGTTTaGTCCCACCAGCAGCCCCTG +
Preference number: 4 (lower is better)
Translates to: EGEREPQVVYIKLQVFKYGSVTV*SHQQPL
Trigger: CAGGGGCTGCTGGTGGGACCAAACAGTGACACTTCC...ATATTTGAACACCTGTAATTTTATGTAAACCACTTGTGGCTCTCTCTCGCCCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR CCA 90 bp TCAGCCAAGTTCAGAAAGCCAAGTGCCACATTTCCTCTCACGTTCAGAATCAAGAAGTGCCTGACTCGTTaGCAAAAGGCAGGAGGGAAT +
Preference number: 4 (lower is better)
Translates to: SAKFRKPSATFPLTFRIKKCLTR*QKAGGN
Trigger: ATTCCCTCCTGCCTTTTGCCAACGAGTCAGGCACTT...CTTGATTCTGAACGTGAGAGGAAATGTGGCACTTGGCTTTCTGAACTTGGCTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038381.14
ENSMUST00000077981.7
CDS-3UTR CCA 90 bp ACCAGCTCTCTGCTCACTCTTTCTAGGAACTATAATATGCAAAGGAGAAAATACAGGAGTTGGTCCTGCTaGGGCCAGCCCGAAAAGCCA +
Preference number: 4 (lower is better)
Translates to: TSSLLTLSRNYNMQRRKYRSWSC*GQPEKP
Trigger: TGGCTTTTCGGGCTGGCCCCAGCAGGACCAACTCCT...GTATTTTCTCCTTTGCATATTATAGTTCCTAGAAAGAGTGAGCAGAGAGCTGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR CCA 90 bp GAGGGCGAGAGAGAGCCACAAGTGGTTTACATAAAATTACAGGTGTTCAAATATGACTCTGCTGCACACTaGTGCACAGGCTGTCCAGGT +
Preference number: 4 (lower is better)
Translates to: EGEREPQVVYIKLQVFKYDSAAH*CTGCPG
Trigger: ACCTGGACAGCCTGTGCACCAGTGTGCAGCAGAGTC...ATATTTGAACACCTGTAATTTTATGTAAACCACTTGTGGCTCTCTCTCGCCCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR TCA 90 bp GGACCTGCTGTGAATGGCAAGATACGGTATTTTATACTAGAAACCCCTGCTCATGGTAGCCCATCTTACTaGTGTACTCCAAGGCAGCTT +
Preference number: 4 (lower is better)
Translates to: GPAVNGKIRYFILETPAHGSPSY*CTPRQL
Trigger: AAGCTGCCTTGGAGTACATCAGTAAGATGGGCTACC...ATGAGCAGGGGTTTCTAGTATAAAATACCGTATCTTGCCATTCACAGCAGGTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR TCA 90 bp AGGACCTGCTGTGAATGGCAAGATACGGTATTTTATACTAGAAACCCCTGCTCAGGAAGACCTCCATCCTaGTCAGCAGGCTCATCATAT +
Preference number: 4 (lower is better)
Translates to: RTCCEWQDTVFYTRNPCSGRPPS*SAGSSY
Trigger: ATATGATGAGCCTGCTGATCAGGATGGAGGTCTTCC...TGAGCAGGGGTTTCTAGTATAAAATACCGTATCTTGCCATTCACAGCAGGTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR TCA 90 bp CATGGATGCAATTTGAGGTCATCCATGGAGCAAAATCAGCCAAGTTCAGAAAGCATGAAGACGCATTTCTaGCACAGGCCTTTCACCCCA +
Preference number: 4 (lower is better)
Translates to: HGCNLRSSMEQNQPSSESMKTHF*HRPFTP
Trigger: TGGGGTGAAAGGCCTGTGTCAGAAATGCGTCTTCAT...GCTTTCTGAACTTGGCTGATTTTGCTCCATGGATGACCTCAAATTGCATCCATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038381.14
CDS-3UTR TCA 90 bp CATGGATGCAATTTGAGGTCATCCATGGAGCAAAATCAGCCAAGTTCAGAAAGCCTTCAGGTACAAGTGTaGGGGTCCGAGCTTGAATTC +
Preference number: 4 (lower is better)
Translates to: HGCNLRSSMEQNQPSSESLQVQV*GSELEF
Trigger: GAATTCAAGCTCGGACCCTCACACTTGTACCTGAAG...GCTTTCTGAACTTGGCTGATTTTGCTCCATGGATGACCTCAAATTGCATCCATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038381.14
ENSMUST00000077981.7
CDS-3UTR TCA 90 bp GGATGCAATTTGAGGTCATCCATGGAGCAAAATCAGCCAAGTTCAGAAAGCCAACTTCAGGTACAAGTGTaGGGGTCCGAGCTTGAATTC +
Preference number: 4 (lower is better)
Translates to: GCNLRSSMEQNQPSSESQLQVQV*GSELEF
Trigger: GAATTCAAGCTCGGACCCTCACACTTGTACCTGAAG...TTGGCTTTCTGAACTTGGCTGATTTTGCTCCATGGATGACCTCAAATTGCATCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038381.14
ENSMUST00000077981.7
CDS-3UTR GCA 90 bp AATTTGAGGTCATCCATGGAGCAAAATCAGCCAAGTTCAGAAAGCCAAGTGCCACCCTCTCGAATCTCTTaGAATCGCTGCCGGCTATTT +
Preference number: 4 (lower is better)
Translates to: NLRSSMEQNQPSSESQVPPSRIS*NRCRLF
Trigger: AAATAGCCGGCAGCGATTGCAAGAGATTCGAGAGGG...TGGCACTTGGCTTTCTGAACTTGGCTGATTTTGCTCCATGGATGACCTCAAATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038381.14
ENSMUST00000077981.7
CDS-3UTR GCA 90 bp GAGGGCGAGAGAGAGCCACAAGTGGTTTACATAAAATTACAGGTGTTCAAATATGCCTGGAGGCATCTTTaGTCCCCAGGACTTTGGCAT +
Preference number: 4 (lower is better)
Translates to: EGEREPQVVYIKLQVFKYAWRHL*SPGLWH
Trigger: ATGCCAAAGTCCTGGGGAGCAAAGATGCCTCCAGGC...ATATTTGAACACCTGTAATTTTATGTAAACCACTTGTGGCTCTCTCTCGCCCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR GCA 90 bp GCACAGCAGACTTCAGAATATGCCATTCATACAAATGTAAACCAGACACAGGAACGCACTTGGCTCTACTaGTGTGCTGTACCCTTTGGG +
Preference number: 4 (lower is better)
Translates to: AQQTSEYAIHTNVNQTQERTWLY*CAVPFG
Trigger: CCCAAAGGGTACAGCACAGCAGTAGAGCCAAGTGCG...TTCCTGTGTCTGGTTTACATTTGTATGAATGGCATATTCTGAAGTCTGCTGTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR GCA 90 bp GAGGGCGAGAGAGAGCCACAAGTGGTTTACATAAAATTACAGGTGTTCAAATATCGCACTTGGCTCTACTaGTGTGCTGTACCCTTTGGG +
Preference number: 4 (lower is better)
Translates to: EGEREPQVVYIKLQVFKYRTWLY*CAVPFG
Trigger: CCCAAAGGGTACAGCACAGCAGTAGAGCCAAGTGCG...ATATTTGAACACCTGTAATTTTATGTAAACCACTTGTGGCTCTCTCTCGCCCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR GCA 90 bp TTTGAGGTCATCCATGGAGCAAAATCAGCCAAGTTCAGAAAGCCAAGTGCCACACACGCACCAGGAATATaGATTGTTGACCGGTTCAAG +
Preference number: 4 (lower is better)
Translates to: FEVIHGAKSAKFRKPSATHAPGI*IVDRFK
Trigger: CTTGAACCGGTCAACAATGCATATTCCTGGTGCGTG...TGTGGCACTTGGCTTTCTGAACTTGGCTGATTTTGCTCCATGGATGACCTCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038381.14
CDS-3UTR CCA 90 bp CATGGATGCAATTTGAGGTCATCCATGGAGCAAAATCAGCCAAGTTCAGAAAGCAAGTGCCTGACTCGTTaGCAAAAGGCAGGAGGGAAT +
Preference number: 4 (lower is better)
Translates to: HGCNLRSSMEQNQPSSESKCLTR*QKAGGN
Trigger: ATTCCCTCCTGCCTTTTGCCAACGAGTCAGGCACTT...GCTTTCTGAACTTGGCTGATTTTGCTCCATGGATGACCTCAAATTGCATCCATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038381.14
ENSMUST00000077981.7
CDS-3UTR CCA 90 bp ACCTCCCTAGGACTGTGCTTCTATAAATCCACTAACCAAAGAGTTCCGATTTCACCCTTCGCACCTTTGTaGCTCTTGTCACTCCTGTCT +
Preference number: 4 (lower is better)
Translates to: TSLGLCFYKSTNQRVPISPFAPL*LLSLLS
Trigger: AGACAGGAGTGACAAGAGCCACAAAGGTGCGAAGGG...TGAAATCGGAACTCTTTGGTTAGTGGATTTATAGAAGCACAGTCCTAGGGAGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR CCA 90 bp GAGGGCGAGAGAGAGCCACAAGTGGTTTACATAAAATTACAGGTGTTCAAATATCACAGAGCCCAGCTTTaGCCATTTCCTGCTCCAGCT +
Preference number: 4 (lower is better)
Translates to: EGEREPQVVYIKLQVFKYHRAQL*PFPAPA
Trigger: AGCTGGAGCAGGAAATGGCCAAAGCTGGGCTCTGTG...ATATTTGAACACCTGTAATTTTATGTAAACCACTTGTGGCTCTCTCTCGCCCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR TCA 90 bp ACCAGCTCTCTGCTCACTCTTTCTAGGAACTATAATATGCAAAGGAGAAAATACATGGCGTACAGAGCGTaGGTGTCCAGCTTACAAGCG +
Preference number: 4 (lower is better)
Translates to: TSSLLTLSRNYNMQRRKYMAYRA*VSSLQA
Trigger: CGCTTGTAAGCTGGACACTCACGCTCTGTACGCCAT...GTATTTTCTCCTTTGCATATTATAGTTCCTAGAAAGAGTGAGCAGAGAGCTGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR TCA 90 bp ACCTCCCTAGGACTGTGCTTCTATAAATCCACTAACCAAAGAGTTCCGATTTCAGGACATCCTTCTTCCTaGGAGTCTTCATGGCGTACA +
Preference number: 4 (lower is better)
Translates to: TSLGLCFYKSTNQRVPISGHPSS*ESSWRT
Trigger: TGTACGCCATGAAGACTCTCAGGAAGAAGGATGTCC...TGAAATCGGAACTCTTTGGTTAGTGGATTTATAGAAGCACAGTCCTAGGGAGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR TCA 90 bp GAGGGCGAGAGAGAGCCACAAGTGGTTTACATAAAATTACAGGTGTTCAAATATTTGACATGGGCCACTTaGTTCCGGTTCAGGACATCC +
Preference number: 4 (lower is better)
Translates to: EGEREPQVVYIKLQVFKYLTWAT*FRFRTS
Trigger: GGATGTCCTGAACCGGAATCAAGTGGCCCATGTCAA...ATATTTGAACACCTGTAATTTTATGTAAACCACTTGTGGCTCTCTCTCGCCCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR GCA 90 bp ACCAGCTCTCTGCTCACTCTTTCTAGGAACTATAATATGCAAAGGAGAAAATACAGGTCCACGCTGTACTaGTCAGACTTACTGGGCAGC +
Preference number: 4 (lower is better)
Translates to: TSSLLTLSRNYNMQRRKYRSTLY*SDLLGS
Trigger: GCTGCCCAGTAAGTCTGAGCAGTACAGCGTGGACCT...GTATTTTCTCCTTTGCATATTATAGTTCCTAGAAAGAGTGAGCAGAGAGCTGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR GCA 90 bp GAATACTGTAAGTCACAATACAAGCACAGCAGACTTCAGAATATGCCATTCATAGCTTTGGCCATTTCCTaGTCCAGCTGTAGCCTCCGG +
Preference number: 4 (lower is better)
Translates to: EYCKSQYKHSRLQNMPFIALAIS*SSCSLR
Trigger: CCGGAGGCTACAGCTGGAGCAGGAAATGGCCAAAGC...TATGAATGGCATATTCTGAAGTCTGCTGTGCTTGTATTGTGACTTACAGTATTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR CCA 90 bp ACCTCCCTAGGACTGTGCTTCTATAAATCCACTAACCAAAGAGTTCCGATTTCAAAGTGCCTGACTCGTTaGCAAAAGGCAGGAGGGAAT +
Preference number: 4 (lower is better)
Translates to: TSLGLCFYKSTNQRVPISKCLTR*QKAGGN
Trigger: ATTCCCTCCTGCCTTTTGCCAACGAGTCAGGCACTT...TGAAATCGGAACTCTTTGGTTAGTGGATTTATAGAAGCACAGTCCTAGGGAGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR CCA 90 bp GAGGGCGAGAGAGAGCCACAAGTGGTTTACATAAAATTACAGGTGTTCAAATATCAATCTGCTCATTCCTaGGGTCCAGGTAGCCCATCT +
Preference number: 4 (lower is better)
Translates to: EGEREPQVVYIKLQVFKYQSAHS*GPGSPS
Trigger: AGATGGGCTACCTGGACCCCAGGAATGAGCAGATTG...ATATTTGAACACCTGTAATTTTATGTAAACCACTTGTGGCTCTCTCTCGCCCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR CCA 90 bp ACCTCCCTAGGACTGTGCTTCTATAAATCCACTAACCAAAGAGTTCCGATTTCAGCTGGAATAGGCATCTaGTGGCGTCTTGTTCTGGAA +
Preference number: 4 (lower is better)
Translates to: TSLGLCFYKSTNQRVPISAGIGI*WRLVLE
Trigger: TTCCAGAACAAGACGCCACCAGATGCCTATTCCAGC...TGAAATCGGAACTCTTTGGTTAGTGGATTTATAGAAGCACAGTCCTAGGGAGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR CCA 90 bp GAATACTGTAAGTCACAATACAAGCACAGCAGACTTCAGAATATGCCATTCATAGACTCTGCTGCACACTaGTGCACAGGCTGTCCAGGT +
Preference number: 4 (lower is better)
Translates to: EYCKSQYKHSRLQNMPFIDSAAH*CTGCPG
Trigger: ACCTGGACAGCCTGTGCACCAGTGTGCAGCAGAGTC...TATGAATGGCATATTCTGAAGTCTGCTGTGCTTGTATTGTGACTTACAGTATTC
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR CCA 90 bp GAGGGCGAGAGAGAGCCACAAGTGGTTTACATAAAATTACAGGTGTTCAAATATGGCTTGATGTCCCGGTaGATAAAGCCCATCTTGTGG +
Preference number: 4 (lower is better)
Translates to: EGEREPQVVYIKLQVFKYGLMSR*IKPILW
Trigger: CCACAAGATGGGCTTTATCCACCGGGACATCAAGCC...ATATTTGAACACCTGTAATTTTATGTAAACCACTTGTGGCTCTCTCTCGCCCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR CCA 90 bp GAGGGCGAGAGAGAGCCACAAGTGGTTTACATAAAATTACAGGTGTTCAAATATCTCCACAGCGACAGTTaGAAACATCGTCCCAGAGGT +
Preference number: 4 (lower is better)
Translates to: EGEREPQVVYIKLQVFKYLHSDS*KHRPRG
Trigger: ACCTCTGGGACGATGTTTCCAACTGTCGCTGTGGAG...ATATTTGAACACCTGTAATTTTATGTAAACCACTTGTGGCTCTCTCTCGCCCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR TCA 90 bp GAGGGCGAGAGAGAGCCACAAGTGGTTTACATAAAATTACAGGTGTTCAAATATGGTAGCCCATCTTACTaGTGTACTCCAAGGCAGCTT +
Preference number: 4 (lower is better)
Translates to: EGEREPQVVYIKLQVFKYGSPSY*CTPRQL
Trigger: AAGCTGCCTTGGAGTACATCAGTAAGATGGGCTACC...ATATTTGAACACCTGTAATTTTATGTAAACCACTTGTGGCTCTCTCTCGCCCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR TCA 90 bp ACCTCCCTAGGACTGTGCTTCTATAAATCCACTAACCAAAGAGTTCCGATTTCAAAGGGGAGTAACTCTTaGTGCGAGACTCTCTCTTCT +
Preference number: 4 (lower is better)
Translates to: TSLGLCFYKSTNQRVPISKGSNS*CETLSS
Trigger: AGAAGAGAGAGTCTCGCATCAAGAGTTACTCCCCTT...TGAAATCGGAACTCTTTGGTTAGTGGATTTATAGAAGCACAGTCCTAGGGAGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR TCA 90 bp ACAAATGTTTACATTTGCCTCCCGAAGAACTCAGTCATATCCAAGACACACACAGGACATCCTTCTTCCTaGGAGTCTTCATGGCGTACA +
Preference number: 4 (lower is better)
Translates to: TNVYICLPKNSVISKTHTGHPSS*ESSWRT
Trigger: TGTACGCCATGAAGACTCTCAGGAAGAAGGATGTCC...TGTGTGTGTCTTGGATATGACTGAGTTCTTCGGGAGGCAAATGTAAACATTTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR TCA 90 bp GAATACTGTAAGTCACAATACAAGCACAGCAGACTTCAGAATATGCCATTCATATGTCCCTCTCAGCCTTaGCATGGGCCACTTGATTCC +
Preference number: 4 (lower is better)
Translates to: EYCKSQYKHSRLQNMPFICPSQP*HGPLDS
Trigger: GGAATCAAGTGGCCCATGTCAAGGCTGAGAGGGACA...TATGAATGGCATATTCTGAAGTCTGCTGTGCTTGTATTGTGACTTACAGTATTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR GCA 90 bp TGGTTTCTCACAGTCAGTCCTTATAATTTAGTAAGAAAAAGATGGGTATCCACACCCGACAAGAGAATGTaGCAGGCACCTCTGGTGCTG +
Preference number: 4 (lower is better)
Translates to: WFLTVSPYNLVRKRWVSTPDKRM*QAPLVL
Trigger: CAGCACCAGAGGTGCCTGGCACATTCTCTTGTCGGG...TGTGGATACCCATCTTTTTCTTACTAAATTATAAGGACTGACTGTGAGAAACCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR CCA 90 bp AGAACCTACCACATCAAACTATGTCAGAGCGCTGTAAATAACACGGCATTACTAAAGTGCCTGACTCGTTaGCAAAAGGCAGGAGGGAAT +
Preference number: 4 (lower is better)
Translates to: RTYHIKLCQSAVNNTALLKCLTR*QKAGGN
Trigger: ATTCCCTCCTGCCTTTTGCCAACGAGTCAGGCACTT...TAGTAATGCCGTGTTATTTACAGCGCTCTGACATAGTTTGATGTGGTAGGTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR CCA 90 bp GAGGGCGAGAGAGAGCCACAAGTGGTTTACATAAAATTACAGGTGTTCAAATATACTGCTCAGACTTACTaGGCAGCAGCAAGTGCTTTG +
Preference number: 4 (lower is better)
Translates to: EGEREPQVVYIKLQVFKYTAQTY*AAASAL
Trigger: CAAAGCACTTGCTGCTGCCCAGTAAGTCTGAGCAGT...ATATTTGAACACCTGTAATTTTATGTAAACCACTTGTGGCTCTCTCTCGCCCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR TCA 90 bp TGGTTTCTCACAGTCAGTCCTTATAATTTAGTAAGAAAAAGATGGGTATCCACAGCATTCACCAACTCCTaGAGCATCTGCCGGTTCACC +
Preference number: 4 (lower is better)
Translates to: WFLTVSPYNLVRKRWVSTAFTNS*SICRFT
Trigger: GGTGAACCGGCAGATGCTTCAGGAGTTGGTGAATGC...TGTGGATACCCATCTTTTTCTTACTAAATTATAAGGACTGACTGTGAGAAACCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR TCA 90 bp ACCTGCTGTGAATGGCAAGATACGGTATTTTATACTAGAAACCCCTGCTCATGCCGATGCCTAGAGTCTTaGTTTTCACAAACATGGACT +
Preference number: 4 (lower is better)
Translates to: TCCEWQDTVFYTRNPCSCRCLES*FSQTWT
Trigger: AGTCCATGTTTGTGAAAATCAAGACTCTAGGCATCG...GCATGAGCAGGGGTTTCTAGTATAAAATACCGTATCTTGCCATTCACAGCAGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR TCA 90 bp ATAATACTAAGTAACGGGTGCACTGTGCTAAGAACCTTGGTGAGAAGATTTGGCTCTGTCAGCTTAATATaGCCATCCAGGTCGATGAGT +
Preference number: 4 (lower is better)
Translates to: IILSNGCTVLRTLVRRFGSVSLI*PSRSMS
Trigger: ACTCATCGACCTGGATGGTCATATTAAGCTGACAGA...GCCAAATCTTCTCACCAAGGTTCTTAGCACAGTGCACCCGTTACTTAGTATTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR CCA 90 bp ACCAGCTCTCTGCTCACTCTTTCTAGGAACTATAATATGCAAAGGAGAAAATACACTGCTCAGACTTACTaGGCAGCAGCAAGTGCTTTG +
Preference number: 4 (lower is better)
Translates to: TSSLLTLSRNYNMQRRKYTAQTY*AAASAL
Trigger: CAAAGCACTTGCTGCTGCCCAGTAAGTCTGAGCAGT...GTATTTTCTCCTTTGCATATTATAGTTCCTAGAAAGAGTGAGCAGAGAGCTGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR CCA 90 bp ACCTCCCTAGGACTGTGCTTCTATAAATCCACTAACCAAAGAGTTCCGATTTCAATAAAGCCCATCTTGTaGACACTTTCAATGGCCAGG +
Preference number: 4 (lower is better)
Translates to: TSLGLCFYKSTNQRVPISIKPIL*TLSMAR
Trigger: CCTGGCCATTGAAAGTGTCCACAAGATGGGCTTTAT...TGAAATCGGAACTCTTTGGTTAGTGGATTTATAGAAGCACAGTCCTAGGGAGGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR GCA 90 bp GCACAGCAGACTTCAGAATATGCCATTCATACAAATGTAAACCAGACACAGGAAAGAAAGTCTAAATATTaGCGCGGCATCTCCTCCAGT +
Preference number: 4 (lower is better)
Translates to: AQQTSEYAIHTNVNQTQERKSKY*RGISSS
Trigger: ACTGGAGGAGATGCCGCGGCAATATTTAGACTTTCT...TTCCTGTGTCTGGTTTACATTTGTATGAATGGCATATTCTGAAGTCTGCTGTGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR GCA 90 bp GAGGGCGAGAGAGAGCCACAAGTGGTTTACATAAAATTACAGGTGTTCAAATATAGAAAGTCTAAATATTaGCGCGGCATCTCCTCCAGT +
Preference number: 4 (lower is better)
Translates to: EGEREPQVVYIKLQVFKYRKSKY*RGISSS
Trigger: ACTGGAGGAGATGCCGCGGCAATATTTAGACTTTCT...ATATTTGAACACCTGTAATTTTATGTAAACCACTTGTGGCTCTCTCTCGCCCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR CCA 90 bp TGGTTTCTCACAGTCAGTCCTTATAATTTAGTAAGAAAAAGATGGGTATCCACACCCTTCGCACCTTTGTaGCTCTTGTCACTCCTGTCT +
Preference number: 4 (lower is better)
Translates to: WFLTVSPYNLVRKRWVSTPFAPL*LLSLLS
Trigger: AGACAGGAGTGACAAGAGCCACAAAGGTGCGAAGGG...TGTGGATACCCATCTTTTTCTTACTAAATTATAAGGACTGACTGTGAGAAACCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR CCA 90 bp TGGTTTCTCACAGTCAGTCCTTATAATTTAGTAAGAAAAAGATGGGTATCCACAGGCTTGATGTCCCGGTaGATAAAGCCCATCTTGTGG +
Preference number: 4 (lower is better)
Translates to: WFLTVSPYNLVRKRWVSTGLMSR*IKPILW
Trigger: CCACAAGATGGGCTTTATCCACCGGGACATCAAGCC...TGTGGATACCCATCTTTTTCTTACTAAATTATAAGGACTGACTGTGAGAAACCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR TCA 90 bp GAATACTGTAAGTCACAATACAAGCACAGCAGACTTCAGAATATGCCATTCATAAAGGGGAGTAACTCTTaGTGCGAGACTCTCTCTTCT +
Preference number: 4 (lower is better)
Translates to: EYCKSQYKHSRLQNMPFIKGSNS*CETLSS
Trigger: AGAAGAGAGAGTCTCGCATCAAGAGTTACTCCCCTT...TATGAATGGCATATTCTGAAGTCTGCTGTGCTTGTATTGTGACTTACAGTATTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR TCA 90 bp GAGGGCGAGAGAGAGCCACAAGTGGTTTACATAAAATTACAGGTGTTCAAATATCGATGCCTAGAGTCTTaGTTTTCACAAACATGGACT +
Preference number: 4 (lower is better)
Translates to: EGEREPQVVYIKLQVFKYRCLES*FSQTWT
Trigger: AGTCCATGTTTGTGAAAATCAAGACTCTAGGCATCG...ATATTTGAACACCTGTAATTTTATGTAAACCACTTGTGGCTCTCTCTCGCCCTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR TCA 90 bp GAATACTGTAAGTCACAATACAAGCACAGCAGACTTCAGAATATGCCATTCATAAGGAGTAGTAGAGTTTaGCCACCCACTCATTGTCTG +
Preference number: 4 (lower is better)
Translates to: EYCKSQYKHSRLQNMPFIRSSRV*PPTHCL
Trigger: CAGACAATGAGTGGGTGGTCAAACTCTACTACTCCT...TATGAATGGCATATTCTGAAGTCTGCTGTGCTTGTATTGTGACTTACAGTATTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR GCA 90 bp TGGTTTCTCACAGTCAGTCCTTATAATTTAGTAAGAAAAAGATGGGTATCCACATTTCCTGGGGAGGTCTaGTTGATGACTCGCACAATC +
Preference number: 4 (lower is better)
Translates to: WFLTVSPYNLVRKRWVSTFPGEV*LMTRTI
Trigger: GATTGTGCGAGTCATCAAGCAGACCTCCCCAGGAAA...TGTGGATACCCATCTTTTTCTTACTAAATTATAAGGACTGACTGTGAGAAACCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR GCA 90 bp ACCAGCTCTCTGCTCACTCTTTCTAGGAACTATAATATGCAAAGGAGAAAATACTCTTCTCTTCATCTCTaGTATTCTTGCGGACAGGCA +
Preference number: 4 (lower is better)
Translates to: TSSLLTLSRNYNMQRRKYSSLHL*YSCGQA
Trigger: TGCCTGTCCGCAAGAATAGCAGAGATGAAGAGAAGA...GTATTTTCTCCTTTGCATATTATAGTTCCTAGAAAGAGTGAGCAGAGAGCTGGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR CAA 90 bp CGAGTCACCGGGGTGGGCGCCAGGCCCTTTCCTGGGGAGGTCTGCTTGATGACTTTGCTCCCCAGGACTTaGGCATCCAGGGAAGTGTCA +
Preference number: 5 (lower is better)
Translates to: RVTGVGARPFPGEVCLMTLLPRT*ASREVS
Trigger: TGACACTTCCCTGGATGCCAAAGTCCTGGGGAGCAA...AGTCATCAAGCAGACCTCCCCAGGAAAGGGCCTGGCGCCCACCCCGGTGACTCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
CDS-3UTR CAA 90 bp AATGAGCCGCTTAGGGGCTGGCTGATAGATCCGGTTGCTTTCCGTGAGTCCTGGCCCTGGGTGGAAGCCTaGGATGGCTGCTTCAGCCCC +
Preference number: 5 (lower is better)
Translates to: NEPLRGWLIDPVAFRESWPWVEA*DGCFSP
Trigger: GGGGCTGAAGCAGCCATCCAAGGCTTCCACCCAGGG...CCAGGACTCACGGAAAGCAACCGGATCTATCAGCCAGCCCCTAAGCGGCTCATT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR CAA 90 bp AGTACTCTCCACACCAGACACCGGAGTCACACCCACCAGCTCTCTGCTCACTCTCGGGGTGGCTCTCATTaGCTGCTGCCTGGAGGCATC +
Preference number: 5 (lower is better)
Translates to: STLHTRHRSHTHQLSAHSRGGSH*LLPGGI
Trigger: GATGCCTCCAGGCAGCAGCAAATGAGAGCCACCCCG...AGAGTGAGCAGAGAGCTGGTGGGTGTGACTCCGGTGTCTGGTGTGGAGAGTACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR CAA 90 bp GACAGTTGGAAACATCGTCCCAGAGGTCACCGGGCTCCATGCTGTCCTGTCTCACGGGGTGGCTCTCATTaGCTGCTGCCTGGAGGCATC +
Preference number: 5 (lower is better)
Translates to: DSWKHRPRGHRAPCCPVSRGGSH*LLPGGI
Trigger: GATGCCTCCAGGCAGCAGCAAATGAGAGCCACCCCG...TGAGACAGGACAGCATGGAGCCCGGTGACCTCTGGGACGATGTTTCCAACTGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
CDS TCA 90 bp CAGCCAAGGCTCTCTTGCTGGTCACATCCCGCATTCACCAACTCCTaGAGCATCTGCCGGTTCACCTCTGCAGCTGCCGAAGTGCCTGAC +
Preference number: 5 (lower is better)
Translates to: QPRLSCWSHPAFTNS*SICRFTSAAAEVPD
Trigger: GTCAGGCACTTCGGCAGCTGCAGAGGTGAACCGGCAGATGCTTCAGGAGTTGGTGAATGCGGGATGTGACCAGCAAGAGAGCCTTGGCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
CDS CCA 90 bp CATCCAGGGAAGTGTCACTGTTTGGTCCCACCAGCAGCCCCTGGGTaGAAGCCTTGGATGGCTGCTTCAGCCCCTCTCGAATCTCTTGCA +
Preference number: 5 (lower is better)
Translates to: HPGKCHCLVPPAAPG*KPWMAASAPLESLA
Trigger: TGCAAGAGATTCGAGAGGGGCTGAAGCAGCCATCCAAGGCTTCCACCCAGGGGCTGCTGGTGGGACCAAACAGTGACACTTCCCTGGATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022531.14
ENSMUST00000038381.14
ENSMUST00000077981.7
ENSMUST00000173990.8
ENSMUST00000174166.2
ENSMUST00000174213.8
CDS TCA 90 bp TGTGAGTTCAAGGCCACCTGGTCACATCCCGCATTCACCAACTCCTaGAGCATCTGCCGGTTCACCTCTGCAGCTGCCGAAGTGCCTGAC +
Preference number: 5 (lower is better)
Translates to: CEFKATWSHPAFTNS*SICRFTSAAAEVPD
Trigger: GTCAGGCACTTCGGCAGCTGCAGAGGTGAACCGGCAGATGCTTCAGGAGTTGGTGAATGCGGGATGTGACCAGGTGGCCTTGAACTCACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038381.14
CDS CCA 90 bp ATCTTTGCTCCCCAGGACTTTGGCATCCAGGGAAGTGTCACTGTTTaGTCCCACCAGCAGCCCCTGGGTGGAAGCCTTGGATGGCTGCTT +
Preference number: 5 (lower is better)
Translates to: IFAPQDFGIQGSVTV*SHQQPLGGSLGWLL
Trigger: AAGCAGCCATCCAAGGCTTCCACCCAGGGGCTGCTGGTGGGACCAAACAGTGACACTTCCCTGGATGCCAAAGTCCTGGGGAGCAAAGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022531.14
ENSMUST00000038381.14
ENSMUST00000077981.7
ENSMUST00000173990.8
ENSMUST00000174166.2
ENSMUST00000174213.8
CDS-3UTR CAA 90 bp GGAAGAGAAAGTCTAAATATTGCCGCGGCATCTCCTCCAGTGCGGCGGGGCCCTCCCCTCTCGAATCTCTaGCAATCGCTGCCGGCTATT +
Preference number: 5 (lower is better)
Translates to: GRESLNIAAASPPVRRGPPLSNL*QSLPAI
Trigger: AATAGCCGGCAGCGATTGCAAGAGATTCGAGAGGGG...AGGGCCCCGCCGCACTGGAGGAGATGCCGCGGCAATATTTAGACTTTCTCTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
CDS-3UTR CAA 90 bp AATGAGCCGCTTAGGGGCTGGCTGATAGATCCGGTTGCTTTCCGTGAGTCCTGGCCTGGGGAGGTCTGCTaGATGACTCGCACAATCTGC +
Preference number: 5 (lower is better)
Translates to: NEPLRGWLIDPVAFRESWPGEVC*MTRTIC
Trigger: GCAGATTGTGCGAGTCATCAAGCAGACCTCCCCAGG...CCAGGACTCACGGAAAGCAACCGGATCTATCAGCCAGCCCCTAAGCGGCTCATT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR CAA 90 bp GCAGTACTCTCCACACCAGACACCGGAGTCACACCCACCAGCTCTCTGCTCACTGGCTCAGGTTGTGGGTaGTTGAAGGAGTTGGTCCTG +
Preference number: 5 (lower is better)
Translates to: AVLSTPDTGVTPTSSLLTGSGCG*LKELVL
Trigger: CAGGACCAACTCCTTCAACAACCCACAACCTGAGCC...AGTGAGCAGAGAGCTGGTGGGTGTGACTCCGGTGTCTGGTGTGGAGAGTACTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS TCA 90 bp CTCCTGAAGCATCTGCCGGTTCACCTCTGCAGCTGCCGAAGTGCCTaGCTCGTTGGCAAAAGGCAGGAGGGAATATCGGATTTCCCTGAG +
Preference number: 5 (lower is better)
Translates to: LLKHLPVHLCSCRSA*LVGKRQEGISDFPE
Trigger: CTCAGGGAAATCCGATATTCCCTCCTGCCTTTTGCCAACGAGTCAGGCACTTCGGCAGCTGCAGAGGTGAACCGGCAGATGCTTCAGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000022531.14
ENSMUST00000038381.14
ENSMUST00000077981.7
ENSMUST00000173990.8
ENSMUST00000174166.2
ENSMUST00000174213.8
CDS TCA 90 bp GCACCAGGAATATGCATCTGGTCACATCCCGCATTCACCAACTCCTaGAGCATCTGCCGGTTCACCTCTGCAGCTGCCGAAGTGCCTGAC +
Preference number: 5 (lower is better)
Translates to: APGICIWSHPAFTNS*SICRFTSAAAEVPD
Trigger: GTCAGGCACTTCGGCAGCTGCAGAGGTGAACCGGCAGATGCTTCAGGAGTTGGTGAATGCGGGATGTGACCAGATGCATATTCCTGGTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000077981.7
CDS GCA 90 bp CCAACTCCTGAAGCATCTGCCGGTTCACCTCTGCAGCTGCCGAAGTaGCTGACTCGTTGGCAAAAGGCAGGAGGGAATATCGGATTTCCC +
Preference number: 5 (lower is better)
Translates to: PTPEASAGSPLQLPK*LTRWQKAGGNIGFP
Trigger: GGGAAATCCGATATTCCCTCCTGCCTTTTGCCAACGAGTCAGGCACTTCGGCAGCTGCAGAGGTGAACCGGCAGATGCTTCAGGAGTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000022531.14
ENSMUST00000038381.14
ENSMUST00000077981.7
ENSMUST00000173990.8
ENSMUST00000174166.2
ENSMUST00000174213.8
CDS CCA 90 bp GTAGCAGCCTGTGTGCCTGTAATCCAGGTGCTGCTGTTTGGGAGATaGGAGGGACAGACAGGAGCATCTCCAGAAACAGACACGCACCAG +
Preference number: 5 (lower is better)
Translates to: VAACVPVIQVLLFGR*EGQTGASPETDTHQ
Trigger: CTGGTGCGTGTCTGTTTCTGGAGATGCTCCTGTCTGTCCCTCCCATCTCCCAAACAGCAGCACCTGGATTACAGGCACACAGGCTGCTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038381.14
ENSMUST00000077981.7
CDS-3UTR CAA 90 bp AATGAGCCGCTTAGGGGCTGGCTGATAGATCCGGTTGCTTTCCGTGAGTCCTGGCCCCTCTCGAATCTCTaGCAATCGCTGCCGGCTATT +
Preference number: 5 (lower is better)
Translates to: NEPLRGWLIDPVAFRESWPLSNL*QSLPAI
Trigger: AATAGCCGGCAGCGATTGCAAGAGATTCGAGAGGGG...CCAGGACTCACGGAAAGCAACCGGATCTATCAGCCAGCCCCTAAGCGGCTCATT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR CAA 90 bp AATGAGCCGCTTAGGGGCTGGCTGATAGATCCGGTTGCTTTCCGTGAGTCCTGGTTGCTCCCCAGGACTTaGGCATCCAGGGAAGTGTCA +
Preference number: 5 (lower is better)
Translates to: NEPLRGWLIDPVAFRESWLLPRT*ASREVS
Trigger: TGACACTTCCCTGGATGCCAAAGTCCTGGGGAGCAA...CCAGGACTCACGGAAAGCAACCGGATCTATCAGCCAGCCCCTAAGCGGCTCATT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR CAA 90 bp ACACCTGACAGCAGACAGGACTACGGAAATGGACAAAACGCTAGAATTATGTCAACGGCGGTGACCGTGTaGGGGGCGGGCAGTGAGGGC +
Preference number: 5 (lower is better)
Translates to: TPDSRQDYGNGQNARIMSTAVTV*GAGSEG
Trigger: GCCCTCACTGCCCGCCCCCAACACGGTCACCGCCGT...TGACATAATTCTAGCGTTTTGTCCATTTCCGTAGTCCTGTCTGCTGTCAGGTGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR CAA 90 bp CCATGGAGCAAAATCAGCCAAGTTCAGAAAGCCAAGTGCCACATTTCCTCTCACCCCTGGGTGGAAGCCTaGGATGGCTGCTTCAGCCCC +
Preference number: 5 (lower is better)
Translates to: PWSKISQVQKAKCHISSHPWVEA*DGCFSP
Trigger: GGGGCTGAAGCAGCCATCCAAGGCTTCCACCCAGGG...GTGAGAGGAAATGTGGCACTTGGCTTTCTGAACTTGGCTGATTTTGCTCCATGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038381.14
ENSMUST00000077981.7
CDS-3UTR CAA 90 bp GCTGGGGGAGGCTACTGCTGCTTGCTGAACATTTCCAAAGTAAATCAGAAAACCCCCTGGGTGGAAGCCTaGGATGGCTGCTTCAGCCCC +
Preference number: 5 (lower is better)
Translates to: AGGGYCCLLNISKVNQKTPWVEA*DGCFSP
Trigger: GGGGCTGAAGCAGCCATCCAAGGCTTCCACCCAGGG...GGTTTTCTGATTTACTTTGGAAATGTTCAGCAAGCAGCAGTAGCCTCCCCCAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
CDS CCA 90 bp CAAAGCTGTAGCAGCCTGTGTGCCTGTAATCCAGGTGCTGCTGTTTaGGAGATGGGAGGGACAGACAGGAGCATCTCCAGAAACAGACAC +
Preference number: 5 (lower is better)
Translates to: QSCSSLCACNPGAAV*EMGGTDRSISRNRH
Trigger: GTGTCTGTTTCTGGAGATGCTCCTGTCTGTCCCTCCCATCTCCCAAACAGCAGCACCTGGATTACAGGCACACAGGCTGCTACAGCTTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038381.14
ENSMUST00000077981.7
CDS-3UTR CAA 90 bp AGAACTGGGTTTCACAGAACCTCCTGGTTGGCTGAGAACACAGGAAGCAGGACCCCCCTCTCGAATCTCTaGCAATCGCTGCCGGCTATT +
Preference number: 5 (lower is better)
Translates to: RTGFHRTSWLAENTGSRTPLSNL*QSLPAI
Trigger: AATAGCCGGCAGCGATTGCAAGAGATTCGAGAGGGG...GGTCCTGCTTCCTGTGTTCTCAGCCAACCAGGAGGTTCTGTGAAACCCAGTTCT
54% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR CAA 90 bp GAGGGCGAGAGAGAGCCACAAGTGGTTTACATAAAATTACAGGTGTTCAAATATACGGCGGTGACCGTGTaGGGGGCGGGCAGTGAGGGC +
Preference number: 5 (lower is better)
Translates to: EGEREPQVVYIKLQVFKYTAVTV*GAGSEG
Trigger: GCCCTCACTGCCCGCCCCCAACACGGTCACCGCCGT...ATATTTGAACACCTGTAATTTTATGTAAACCACTTGTGGCTCTCTCTCGCCCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR CAA 90 bp TCTCCAGCTCTTCCTTTTCTAGCTGTGGACAAGTGCTATCAGATACAACACACAGCGTGCTCTGGATGCTaGCTGCTGGGGGAGGCCAGC +
Preference number: 5 (lower is better)
Translates to: SPALPFLAVDKCYQIQHTACSGC*LLGEAS
Trigger: GCTGGCCTCCCCCAGCAGCAAGCATCCAGAGCACGC...TGTGTGTTGTATCTGATAGCACTTGTCCACAGCTAGAAAAGGAAGAGCTGGAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR CAA 90 bp CAAAATCAGCCAAGTTCAGAAAGCCAAGTGCCACATTTCCTCTCACGTTCAGAACCCTGGGTGGAAGCCTaGGATGGCTGCTTCAGCCCC +
Preference number: 5 (lower is better)
Translates to: QNQPSSESQVPHFLSRSEPWVEA*DGCFSP
Trigger: GGGGCTGAAGCAGCCATCCAAGGCTTCCACCCAGGG...TTCTGAACGTGAGAGGAAATGTGGCACTTGGCTTTCTGAACTTGGCTGATTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038381.14
ENSMUST00000077981.7
CDS-3UTR CAA 90 bp AAAGAACTGGGTTTCACAGAACCTCCTGGTTGGCTGAGAACACAGGAAGCAGGATCCACCGGGTCAAAATaGGAGGTGTCCATGGGGTGG +
Preference number: 5 (lower is better)
Translates to: KELGFTEPPGWLRTQEAGSTGSK*EVSMGW
Trigger: CCACCCCATGGACACCTCCAATTTTGACCCGGTGGA...TCCTGCTTCCTGTGTTCTCAGCCAACCAGGAGGTTCTGTGAAACCCAGTTCTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR CAA 90 bp ACAAATGTTTACATTTGCCTCCCGAAGAACTCAGTCATATCCAAGACACACACAAGCGTGTCCCAGGCCTaGGCGCTCTCTCCGCTGGCC +
Preference number: 5 (lower is better)
Translates to: TNVYICLPKNSVISKTHTSVSQA*ALSPLA
Trigger: GGCCAGCGGAGAGAGCGCCAAGGCCTGGGACACGCT...TGTGTGTGTCTTGGATATGACTGAGTTCTTCGGGAGGCAAATGTAAACATTTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS TCA 90 bp AGACGCATTTCTGACACAGGCCTTTCACCCCAGCACTTGAGAGGCTaGGGCAAACATATCTCTGTGAGTTCAAGGCCACCTGGTCACATC +
Preference number: 5 (lower is better)
Translates to: RRISDTGLSPQHLRG*GKHISVSSRPPGHI
Trigger: GATGTGACCAGGTGGCCTTGAACTCACAGAGATATGTTTGCCTCAGCCTCTCAAGTGCTGGGGTGAAAGGCCTGTGTCAGAAATGCGTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038381.14
CDS GCA 90 bp GGGACAGACAGGAGCATCTCCAGAAACAGACACGCACCAGGAATATaGATTGTTGACCGGTTCAAGATCTTCCACAGCCTGGAACACAGG +
Preference number: 5 (lower is better)
Translates to: GTDRSISRNRHAPGI*IVDRFKIFHSLEHR
Trigger: CCTGTGTTCCAGGCTGTGGAAGATCTTGAACCGGTCAACAATGCATATTCCTGGTGCGTGTCTGTTTCTGGAGATGCTCCTGTCTGTCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038381.14
CDS-3UTR CAA 90 bp GGGCTCAGGTTGTGGGTTGTTGAAGGAGTTGGTCCTGCTGGGGCCAGCCCGAAATATTTCCAGAGTAAGTaGTGGCAGGAAAAGTCTTTG +
Preference number: 5 (lower is better)
Translates to: GLRLWVVEGVGPAGASPKYFQSK*WQEKSL
Trigger: CAAAGACTTTTCCTGCCACAACTTACTCTGGAAATA...TTTCGGGCTGGCCCCAGCAGGACCAACTCCTTCAACAACCCACAACCTGAGCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
CDS-3UTR CAA 90 bp ATAATACTAAGTAACGGGTGCACTGTGCTAAGAACCTTGGTGAGAAGATTTGGCCCCTGGGTGGAAGCCTaGGATGGCTGCTTCAGCCCC +
Preference number: 5 (lower is better)
Translates to: IILSNGCTVLRTLVRRFGPWVEA*DGCFSP
Trigger: GGGGCTGAAGCAGCCATCCAAGGCTTCCACCCAGGG...GCCAAATCTTCTCACCAAGGTTCTTAGCACAGTGCACCCGTTACTTAGTATTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR CAA 90 bp CAAAATCAGCCAAGTTCAGAAAGCCAAGTGCCACATTTCCTCTCACGTTCAGAACGGGGTGGCTCTCATTaGCTGCTGCCTGGAGGCATC +
Preference number: 5 (lower is better)
Translates to: QNQPSSESQVPHFLSRSERGGSH*LLPGGI
Trigger: GATGCCTCCAGGCAGCAGCAAATGAGAGCCACCCCG...TTCTGAACGTGAGAGGAAATGTGGCACTTGGCTTTCTGAACTTGGCTGATTTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038381.14
ENSMUST00000077981.7
CDS-3UTR CAA 90 bp ACCTCCCTAGGACTGTGCTTCTATAAATCCACTAACCAAAGAGTTCCGATTTCACGGGGCCCTCGTAGTTaGCACCACCCAGCTGGTGGT +
Preference number: 5 (lower is better)
Translates to: TSLGLCFYKSTNQRVPISRGPRS*HHPAGG
Trigger: ACCACCAGCTGGGTGGTGCAAACTACGAGGGCCCCG...TGAAATCGGAACTCTTTGGTTAGTGGATTTATAGAAGCACAGTCCTAGGGAGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR CAA 90 bp GGAGCAAAATCAGCCAAGTTCAGAAAGCCAAGTGCCACATTTCCTCTCACGTTCCCCCTCTCGAATCTCTaGCAATCGCTGCCGGCTATT +
Preference number: 5 (lower is better)
Translates to: GAKSAKFRKPSATFPLTFPLSNL*QSLPAI
Trigger: AATAGCCGGCAGCGATTGCAAGAGATTCGAGAGGGG...GAACGTGAGAGGAAATGTGGCACTTGGCTTTCTGAACTTGGCTGATTTTGCTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038381.14
ENSMUST00000077981.7
CDS-3UTR CAA 90 bp GGAGCAAAATCAGCCAAGTTCAGAAAGCCAAGTGCCACATTTCCTCTCACGTTCTTGCTCCCCAGGACTTaGGCATCCAGGGAAGTGTCA +
Preference number: 5 (lower is better)
Translates to: GAKSAKFRKPSATFPLTFLLPRT*ASREVS
Trigger: TGACACTTCCCTGGATGCCAAAGTCCTGGGGAGCAA...GAACGTGAGAGGAAATGTGGCACTTGGCTTTCTGAACTTGGCTGATTTTGCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038381.14
ENSMUST00000077981.7
CDS-3UTR CAA 90 bp TGTAACCATGGATGCAATTTGAGGTCATCCATGGAGCAAAATCAGCCAAGTTCACGGGGTGGCTCTCATTaGCTGCTGCCTGGAGGCATC +
Preference number: 5 (lower is better)
Translates to: CNHGCNLRSSMEQNQPSSRGGSH*LLPGGI
Trigger: GATGCCTCCAGGCAGCAGCAAATGAGAGCCACCCCG...TGAACTTGGCTGATTTTGCTCCATGGATGACCTCAAATTGCATCCATGGTTACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038381.14
ENSMUST00000077981.7
CDS-3UTR CAA 90 bp ACCTCCCTAGGACTGTGCTTCTATAAATCCACTAACCAAAGAGTTCCGATTTCACGGGGTGGCTCTCATTaGCTGCTGCCTGGAGGCATC +
Preference number: 5 (lower is better)
Translates to: TSLGLCFYKSTNQRVPISRGGSH*LLPGGI
Trigger: GATGCCTCCAGGCAGCAGCAAATGAGAGCCACCCCG...TGAAATCGGAACTCTTTGGTTAGTGGATTTATAGAAGCACAGTCCTAGGGAGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR CAA 90 bp TTTGAGGTCATCCATGGAGCAAAATCAGCCAAGTTCAGAAAGCCAAGTGCCACATCCAGGTGCTGCTGTTaGGGAGATGGGAGGGACAGA +
Preference number: 5 (lower is better)
Translates to: FEVIHGAKSAKFRKPSATSRCCC*GDGRDR
Trigger: TCTGTCCCTCCCATCTCCCAAACAGCAGCACCTGGA...TGTGGCACTTGGCTTTCTGAACTTGGCTGATTTTGCTCCATGGATGACCTCAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038381.14
ENSMUST00000077981.7
CDS-3UTR CAA 90 bp ACACCTGACAGCAGACAGGACTACGGAAATGGACAAAACGCTAGAATTATGTCACCTGGGGAGGTCTGCTaGATGACTCGCACAATCTGC +
Preference number: 5 (lower is better)
Translates to: TPDSRQDYGNGQNARIMSPGEVC*MTRTIC
Trigger: GCAGATTGTGCGAGTCATCAAGCAGACCTCCCCAGG...TGACATAATTCTAGCGTTTTGTCCATTTCCGTAGTCCTGTCTGCTGTCAGGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR CAA 90 bp GAGGGCGAGAGAGAGCCACAAGTGGTTTACATAAAATTACAGGTGTTCAAATATGGGTTGTTGAAGGAGTaGGTCCTGCTGGGGCCAGCC +
Preference number: 5 (lower is better)
Translates to: EGEREPQVVYIKLQVFKYGLLKE*VLLGPA
Trigger: GGCTGGCCCCAGCAGGACCAACTCCTTCAACAACCC...ATATTTGAACACCTGTAATTTTATGTAAACCACTTGTGGCTCTCTCTCGCCCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR CAA 90 bp CCATGGATGCAATTTGAGGTCATCCATGGAGCAAAATCAGCCAAGTTCAGAAAGTCCAGGTGCTGCTGTTaGGGAGATGGGAGGGACAGA +
Preference number: 5 (lower is better)
Translates to: PWMQFEVIHGAKSAKFRKSRCCC*GDGRDR
Trigger: TCTGTCCCTCCCATCTCCCAAACAGCAGCACCTGGA...CTTTCTGAACTTGGCTGATTTTGCTCCATGGATGACCTCAAATTGCATCCATGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038381.14
ENSMUST00000077981.7
CDS-3UTR CAA 90 bp CAAAATCAGCCAAGTTCAGAAAGCCAAGTGCCACATTTCCTCTCACGTTCAGAACCCCTCTCGAATCTCTaGCAATCGCTGCCGGCTATT +
Preference number: 5 (lower is better)
Translates to: QNQPSSESQVPHFLSRSEPLSNL*QSLPAI
Trigger: AATAGCCGGCAGCGATTGCAAGAGATTCGAGAGGGG...TTCTGAACGTGAGAGGAAATGTGGCACTTGGCTTTCTGAACTTGGCTGATTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038381.14
ENSMUST00000077981.7
CDS-3UTR CAA 90 bp CCATGGATGCAATTTGAGGTCATCCATGGAGCAAAATCAGCCAAGTTCAGAAAGTTGCTCCCCAGGACTTaGGCATCCAGGGAAGTGTCA +
Preference number: 5 (lower is better)
Translates to: PWMQFEVIHGAKSAKFRKLLPRT*ASREVS
Trigger: TGACACTTCCCTGGATGCCAAAGTCCTGGGGAGCAA...CTTTCTGAACTTGGCTGATTTTGCTCCATGGATGACCTCAAATTGCATCCATGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038381.14
ENSMUST00000077981.7
CDS-3UTR CAA 90 bp ACCAGCTCTCTGCTCACTCTTTCTAGGAACTATAATATGCAAAGGAGAAAATACGGGTTGTTGAAGGAGTaGGTCCTGCTGGGGCCAGCC +
Preference number: 5 (lower is better)
Translates to: TSSLLTLSRNYNMQRRKYGLLKE*VLLGPA
Trigger: GGCTGGCCCCAGCAGGACCAACTCCTTCAACAACCC...GTATTTTCTCCTTTGCATATTATAGTTCCTAGAAAGAGTGAGCAGAGAGCTGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR CAA 90 bp TCTCCAGCTCTTCCTTTTCTAGCTGTGGACAAGTGCTATCAGATACAACACACATCTCCACAGCGACAGTaGGAAACATCGTCCCAGAGG +
Preference number: 5 (lower is better)
Translates to: SPALPFLAVDKCYQIQHTSPQRQ*ETSSQR
Trigger: CCTCTGGGACGATGTTTCCAACTGTCGCTGTGGAGA...TGTGTGTTGTATCTGATAGCACTTGTCCACAGCTAGAAAAGGAAGAGCTGGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR CAA 90 bp TGGTTTCTCACAGTCAGTCCTTATAATTTAGTAAGAAAAAGATGGGTATCCACACGGGGCCCTCGTAGTTaGCACCACCCAGCTGGTGGT +
Preference number: 5 (lower is better)
Translates to: WFLTVSPYNLVRKRWVSTRGPRS*HHPAGG
Trigger: ACCACCAGCTGGGTGGTGCAAACTACGAGGGCCCCG...TGTGGATACCCATCTTTTTCTTACTAAATTATAAGGACTGACTGTGAGAAACCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR CAA 90 bp ACCTCCCTAGGACTGTGCTTCTATAAATCCACTAACCAAAGAGTTCCGATTTCAGGCTCAGGTTGTGGGTaGTTGAAGGAGTTGGTCCTG +
Preference number: 5 (lower is better)
Translates to: TSLGLCFYKSTNQRVPISGSGCG*LKELVL
Trigger: CAGGACCAACTCCTTCAACAACCCACAACCTGAGCC...TGAAATCGGAACTCTTTGGTTAGTGGATTTATAGAAGCACAGTCCTAGGGAGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR CAA 90 bp GCACAGCAGACTTCAGAATATGCCATTCATACAAATGTAAACCAGACACAGGAATCACAGAGCCCAGCTTaGGCCATTTCCTGCTCCAGC +
Preference number: 5 (lower is better)
Translates to: AQQTSEYAIHTNVNQTQESQSPA*AISCSS
Trigger: GCTGGAGCAGGAAATGGCCAAAGCTGGGCTCTGTGA...TTCCTGTGTCTGGTTTACATTTGTATGAATGGCATATTCTGAAGTCTGCTGTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR CAA 90 bp GAGGGCGAGAGAGAGCCACAAGTGGTTTACATAAAATTACAGGTGTTCAAATATTCACAGAGCCCAGCTTaGGCCATTTCCTGCTCCAGC +
Preference number: 5 (lower is better)
Translates to: EGEREPQVVYIKLQVFKYSQSPA*AISCSS
Trigger: GCTGGAGCAGGAAATGGCCAAAGCTGGGCTCTGTGA...ATATTTGAACACCTGTAATTTTATGTAAACCACTTGTGGCTCTCTCTCGCCCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR CAA 90 bp ACCTCCCTAGGACTGTGCTTCTATAAATCCACTAACCAAAGAGTTCCGATTTCAATGGACTTGTCCATCTaGGCCCTCTTCAGCCGGTTG +
Preference number: 5 (lower is better)
Translates to: TSLGLCFYKSTNQRVPISMDLSI*ALFSRL
Trigger: CAACCGGCTGAAGAGGGCCAAGATGGACAAGTCCAT...TGAAATCGGAACTCTTTGGTTAGTGGATTTATAGAAGCACAGTCCTAGGGAGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR CAA 90 bp TCTCCAGCTCTTCCTTTTCTAGCTGTGGACAAGTGCTATCAGATACAACACACACTTGACATGGGCCACTaGATTCCGGTTCAGGACATC +
Preference number: 5 (lower is better)
Translates to: SPALPFLAVDKCYQIQHTLDMGH*IPVQDI
Trigger: GATGTCCTGAACCGGAATCAAGTGGCCCATGTCAAG...TGTGTGTTGTATCTGATAGCACTTGTCCACAGCTAGAAAAGGAAGAGCTGGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR CAA 90 bp ACAAATGTTTACATTTGCCTCCCGAAGAACTCAGTCATATCCAAGACACACACATTGCTCCCCAGGACTTaGGCATCCAGGGAAGTGTCA +
Preference number: 5 (lower is better)
Translates to: TNVYICLPKNSVISKTHTLLPRT*ASREVS
Trigger: TGACACTTCCCTGGATGCCAAAGTCCTGGGGAGCAA...TGTGTGTGTCTTGGATATGACTGAGTTCTTCGGGAGGCAAATGTAAACATTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR CAA 90 bp ATAATACTAAGTAACGGGTGCACTGTGCTAAGAACCTTGGTGAGAAGATTTGGCGCACCTTTGTGGCTCTaGTCACTCCTGTCTTGCTCA +
Preference number: 5 (lower is better)
Translates to: IILSNGCTVLRTLVRRFGAPLWL*SLLSCS
Trigger: TGAGCAAGACAGGAGTGACAAGAGCCACAAAGGTGC...GCCAAATCTTCTCACCAAGGTTCTTAGCACAGTGCACCCGTTACTTAGTATTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR CAA 90 bp GAGGGCGAGAGAGAGCCACAAGTGGTTTACATAAAATTACAGGTGTTCAAATATTCTCCACAGCGACAGTaGGAAACATCGTCCCAGAGG +
Preference number: 5 (lower is better)
Translates to: EGEREPQVVYIKLQVFKYSPQRQ*ETSSQR
Trigger: CCTCTGGGACGATGTTTCCAACTGTCGCTGTGGAGA...ATATTTGAACACCTGTAATTTTATGTAAACCACTTGTGGCTCTCTCTCGCCCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR CAA 90 bp ACCAGCTCTCTGCTCACTCTTTCTAGGAACTATAATATGCAAAGGAGAAAATACAAGAACGGGTGTGCCTaGAGGTCATCTGCCCCATCC +
Preference number: 5 (lower is better)
Translates to: TSSLLTLSRNYNMQRRKYKNGCA*RSSAPS
Trigger: GGATGGGGCAGATGACCTCAAGGCACACCCGTTCTT...GTATTTTCTCCTTTGCATATTATAGTTCCTAGAAAGAGTGAGCAGAGAGCTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR CAA 90 bp ACAAATGTTTACATTTGCCTCCCGAAGAACTCAGTCATATCCAAGACACACACATCAGGTTGTGGGTTGTaGAAGGAGTTGGTCCTGCTG +
Preference number: 5 (lower is better)
Translates to: TNVYICLPKNSVISKTHTSGCGL*KELVLL
Trigger: CAGCAGGACCAACTCCTTCAACAACCCACAACCTGA...TGTGTGTGTCTTGGATATGACTGAGTTCTTCGGGAGGCAAATGTAAACATTTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR CAA 90 bp GAGGGCGAGAGAGAGCCACAAGTGGTTTACATAAAATTACAGGTGTTCAAATATTCAGGTTGTGGGTTGTaGAAGGAGTTGGTCCTGCTG +
Preference number: 5 (lower is better)
Translates to: EGEREPQVVYIKLQVFKYSGCGL*KELVLL
Trigger: CAGCAGGACCAACTCCTTCAACAACCCACAACCTGA...ATATTTGAACACCTGTAATTTTATGTAAACCACTTGTGGCTCTCTCTCGCCCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR CAA 90 bp GAGGGCGAGAGAGAGCCACAAGTGGTTTACATAAAATTACAGGTGTTCAAATATGCACCTTTGTGGCTCTaGTCACTCCTGTCTTGCTCA +
Preference number: 5 (lower is better)
Translates to: EGEREPQVVYIKLQVFKYAPLWL*SLLSCS
Trigger: TGAGCAAGACAGGAGTGACAAGAGCCACAAAGGTGC...ATATTTGAACACCTGTAATTTTATGTAAACCACTTGTGGCTCTCTCTCGCCCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR CAA 90 bp GAGGGCGAGAGAGAGCCACAAGTGGTTTACATAAAATTACAGGTGTTCAAATATTTGTCTCTGCCAGCTTaGTCTCCCTTCGCACCTTTG +
Preference number: 5 (lower is better)
Translates to: EGEREPQVVYIKLQVFKYLSLPA*SPFAPL
Trigger: CAAAGGTGCGAAGGGAGACAAAGCTGGCAGAGACAA...ATATTTGAACACCTGTAATTTTATGTAAACCACTTGTGGCTCTCTCTCGCCCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR CAA 90 bp GAGGGCGAGAGAGAGCCACAAGTGGTTTACATAAAATTACAGGTGTTCAAATATCTTGACATGGGCCACTaGATTCCGGTTCAGGACATC +
Preference number: 5 (lower is better)
Translates to: EGEREPQVVYIKLQVFKYLDMGH*IPVQDI
Trigger: GATGTCCTGAACCGGAATCAAGTGGCCCATGTCAAG...ATATTTGAACACCTGTAATTTTATGTAAACCACTTGTGGCTCTCTCTCGCCCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR CAA 90 bp ACCTCCCTAGGACTGTGCTTCTATAAATCCACTAACCAAAGAGTTCCGATTTCAAGTATGTTGTCAGGCTaGATGTCCCGGTGGATAAAG +
Preference number: 5 (lower is better)
Translates to: TSLGLCFYKSTNQRVPISSMLSG*MSRWIK
Trigger: CTTTATCCACCGGGACATCAAGCCTGACAACATACT...TGAAATCGGAACTCTTTGGTTAGTGGATTTATAGAAGCACAGTCCTAGGGAGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS-3UTR CAA 90 bp GCAAAATCAGCCAAGTTCAGAAAGCCAAGTGCCACATTTCCTCTCACGTTCAGATATTTCCAGAGTAAGTaGTGGCAGGAAAAGTCTTTG +
Preference number: 5 (lower is better)
Translates to: AKSAKFRKPSATFPLTFRYFQSK*WQEKSL
Trigger: CAAAGACTTTTCCTGCCACAACTTACTCTGGAAATA...TCTGAACGTGAGAGGAAATGTGGCACTTGGCTTTCTGAACTTGGCTGATTTTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038381.14
ENSMUST00000077981.7
CDS-3UTR CAA 90 bp TGGTTTCTCACAGTCAGTCCTTATAATTTAGTAAGAAAAAGATGGGTATCCACAATGGACTTGTCCATCTaGGCCCTCTTCAGCCGGTTG +
Preference number: 5 (lower is better)
Translates to: WFLTVSPYNLVRKRWVSTMDLSI*ALFSRL
Trigger: CAACCGGCTGAAGAGGGCCAAGATGGACAAGTCCAT...TGTGGATACCCATCTTTTTCTTACTAAATTATAAGGACTGACTGTGAGAAACCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR CAA 90 bp GCACAGCAGACTTCAGAATATGCCATTCATACAAATGTAAACCAGACACAGGAAAGTATGTTGTCAGGCTaGATGTCCCGGTGGATAAAG +
Preference number: 5 (lower is better)
Translates to: AQQTSEYAIHTNVNQTQESMLSG*MSRWIK
Trigger: CTTTATCCACCGGGACATCAAGCCTGACAACATACT...TTCCTGTGTCTGGTTTACATTTGTATGAATGGCATATTCTGAAGTCTGCTGTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR CAA 90 bp ACCAGCTCTCTGCTCACTCTTTCTAGGAACTATAATATGCAAAGGAGAAAATACGAAAAGTCGATGGTGTaGAAGAACGGGTGTGCCTTG +
Preference number: 5 (lower is better)
Translates to: TSSLLTLSRNYNMQRRKYEKSMV*KNGCAL
Trigger: CAAGGCACACCCGTTCTTCAACACCATCGACTTTTC...GTATTTTCTCCTTTGCATATTATAGTTCCTAGAAAGAGTGAGCAGAGAGCTGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR CAA 90 bp TCTCCAGCTCTTCCTTTTCTAGCTGTGGACAAGTGCTATCAGATACAACACACATATTTCCAGAGTAAGTaGTGGCAGGAAAAGTCTTTG +
Preference number: 5 (lower is better)
Translates to: SPALPFLAVDKCYQIQHTYFQSK*WQEKSL
Trigger: CAAAGACTTTTCCTGCCACAACTTACTCTGGAAATA...TGTGTGTTGTATCTGATAGCACTTGTCCACAGCTAGAAAAGGAAGAGCTGGAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR CAA 90 bp AATTTGAGGTCATCCATGGAGCAAAATCAGCCAAGTTCAGAAAGCCAAGTGCCATATTTCCAGAGTAAGTaGTGGCAGGAAAAGTCTTTG +
Preference number: 5 (lower is better)
Translates to: NLRSSMEQNQPSSESQVPYFQSK*WQEKSL
Trigger: CAAAGACTTTTCCTGCCACAACTTACTCTGGAAATA...TGGCACTTGGCTTTCTGAACTTGGCTGATTTTGCTCCATGGATGACCTCAAATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038381.14
ENSMUST00000077981.7
CDS-3UTR CAA 90 bp TGGTTTCTCACAGTCAGTCCTTATAATTTAGTAAGAAAAAGATGGGTATCCACATTGTCTCTGCCAGCTTaGTCTCCCTTCGCACCTTTG +
Preference number: 5 (lower is better)
Translates to: WFLTVSPYNLVRKRWVSTLSLPA*SPFAPL
Trigger: CAAAGGTGCGAAGGGAGACAAAGCTGGCAGAGACAA...TGTGGATACCCATCTTTTTCTTACTAAATTATAAGGACTGACTGTGAGAAACCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022531.14
CDS-3UTR CAA 90 bp ACCTCCCTAGGACTGTGCTTCTATAAATCCACTAACCAAAGAGTTCCGATTTCATATTTCCAGAGTAAGTaGTGGCAGGAAAAGTCTTTG +
Preference number: 5 (lower is better)
Translates to: TSLGLCFYKSTNQRVPISYFQSK*WQEKSL
Trigger: CAAAGACTTTTCCTGCCACAACTTACTCTGGAAATA...TGAAATCGGAACTCTTTGGTTAGTGGATTTATAGAAGCACAGTCCTAGGGAGGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173990.8
CDS TCA 72 bp GCCATCTCCTGGTCACATCCCGCATTCACCAACTCCTaGAGCATCTGCCGGTTCACCTCTGCAGCTGCCGAA +
Preference number: 6 (lower is better)
Translates to: AISWSHPAFTNS*SICRFTSAAAE
Trigger: TTCGGCAGCTGCAGAGGTGAACCGGCAGATGCTTCAGGAGTTGGTGAATGCGGGATGTGACCAGGAGATGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022531.14
ENSMUST00000173990.8
CDS TCA 72 bp AAGGCCACCTGGTCACATCCCGCATTCACCAACTCCTaGAGCATCTGCCGGTTCACCTCTGCAGCTGCCGAA +
Preference number: 6 (lower is better)
Translates to: KATWSHPAFTNS*SICRFTSAAAE
Trigger: TTCGGCAGCTGCAGAGGTGAACCGGCAGATGCTTCAGGAGTTGGTGAATGCGGGATGTGACCAGGTGGCCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038381.14
CDS TCA 72 bp CATCTGCCGGTTCACCTCTGCAGCTGCCGAAGTGCCTaGCTCGTTGGCAAAAGGCAGGAGGGAATATCGGAT +
Preference number: 6 (lower is better)
Translates to: HLPVHLCSCRSA*LVGKRQEGISD
Trigger: ATCCGATATTCCCTCCTGCCTTTTGCCAACGAGTCAGGCACTTCGGCAGCTGCAGAGGTGAACCGGCAGATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000022531.14
ENSMUST00000038381.14
ENSMUST00000077981.7
ENSMUST00000173990.8
ENSMUST00000174166.2
ENSMUST00000174213.8
CDS TCA 72 bp CTCTCTTGCTGGTCACATCCCGCATTCACCAACTCCTaGAGCATCTGCCGGTTCACCTCTGCAGCTGCCGAA +
Preference number: 6 (lower is better)
Translates to: LSCWSHPAFTNS*SICRFTSAAAE
Trigger: TTCGGCAGCTGCAGAGGTGAACCGGCAGATGCTTCAGGAGTTGGTGAATGCGGGATGTGACCAGCAAGAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174213.8
CDS GCA 72 bp GAAGCATCTGCCGGTTCACCTCTGCAGCTGCCGAAGTaGCTGACTCGTTGGCAAAAGGCAGGAGGGAATATC +
Preference number: 6 (lower is better)
Translates to: EASAGSPLQLPK*LTRWQKAGGNI
Trigger: GATATTCCCTCCTGCCTTTTGCCAACGAGTCAGGCACTTCGGCAGCTGCAGAGGTGAACCGGCAGATGCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000022531.14
ENSMUST00000038381.14
ENSMUST00000077981.7
ENSMUST00000173990.8
ENSMUST00000174166.2
ENSMUST00000174213.8
CDS GCA 72 bp TACTCCAAGGCAGCTTCGATACTCCTACTGCCCGTCTaGTTGAGCGCTCTGCCAGCCATCTCCTGGTCACAT +
Preference number: 6 (lower is better)
Translates to: YSKAASILLLPV*LSALPAISWSH
Trigger: ATGTGACCAGGAGATGGCTGGCAGAGCGCTCAAGCAGACGGGCAGTAGGAGTATCGAAGCTGCCTTGGAGTA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022531.14
ENSMUST00000173990.8
CDS CCA 72 bp AGCAGCCTGTGTGCCTGTAATCCAGGTGCTGCTGTTTaGGAGATGGGAGGGACAGACAGGAGCATCTCCAGA +
Preference number: 6 (lower is better)
Translates to: SSLCACNPGAAV*EMGGTDRSISR
Trigger: TCTGGAGATGCTCCTGTCTGTCCCTCCCATCTCCCAAACAGCAGCACCTGGATTACAGGCACACAGGCTGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038381.14
ENSMUST00000077981.7
CDS CAA 72 bp CGGTTCACCTCTGCAGCTGCCGAAGTGCCTGACTCGTaGGCAAAAGGCAGGAGGGAATATCGGATTTCCCTG +
Preference number: 6 (lower is better)
Translates to: RFTSAAAEVPDS*AKGRREYRISL
Trigger: CAGGGAAATCCGATATTCCCTCCTGCCTTTTGCCAACGAGTCAGGCACTTCGGCAGCTGCAGAGGTGAACCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000022531.14
ENSMUST00000038381.14
ENSMUST00000077981.7
ENSMUST00000173990.8
ENSMUST00000174166.2
ENSMUST00000174213.8
CDS CAA 90 bp CCAAACTTCGGGGTGGCTCTCATTTGCTGCTGCCTGGAGGCATCTTaGCTCCCCAGGACTTTGGCATCCAGGGAAGTGTCACTGTTTGGT +
Preference number: 6 (lower is better)
Translates to: PNFGVALICCCLEAS*LPRTLASREVSLFG
Trigger: ACCAAACAGTGACACTTCCCTGGATGCCAAAGTCCTGGGGAGCAAAGATGCCTCCAGGCAGCAGCAAATGAGAGCCACCCCGAAGTTTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022531.14
ENSMUST00000038381.14
ENSMUST00000077981.7
ENSMUST00000173990.8
ENSMUST00000174166.2
ENSMUST00000174213.8
CDS TCA 72 bp ATATGCATCTGGTCACATCCCGCATTCACCAACTCCTaGAGCATCTGCCGGTTCACCTCTGCAGCTGCCGAA +
Preference number: 6 (lower is better)
Translates to: ICIWSHPAFTNS*SICRFTSAAAE
Trigger: TTCGGCAGCTGCAGAGGTGAACCGGCAGATGCTTCAGGAGTTGGTGAATGCGGGATGTGACCAGATGCATAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000077981.7
CDS CCA 72 bp TGTGTGCCTGTAATCCAGGTGCTGCTGTTTGGGAGATaGGAGGGACAGACAGGAGCATCTCCAGAAACAGAC +
Preference number: 6 (lower is better)
Translates to: CVPVIQVLLFGR*EGQTGASPETD
Trigger: GTCTGTTTCTGGAGATGCTCCTGTCTGTCCCTCCCATCTCCCAAACAGCAGCACCTGGATTACAGGCACACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038381.14
ENSMUST00000077981.7
CDS TCA 72 bp TCTGACACAGGCCTTTCACCCCAGCACTTGAGAGGCTaGGGCAAACATATCTCTGTGAGTTCAAGGCCACCT +
Preference number: 6 (lower is better)
Translates to: SDTGLSPQHLRG*GKHISVSSRPP
Trigger: AGGTGGCCTTGAACTCACAGAGATATGTTTGCCTCAGCCTCTCAAGTGCTGGGGTGAAAGGCCTGTGTCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038381.14
CDS CAA 72 bp AGCCTTGGATGGCTGCTTCAGCCCCTCTCGAATCTCTaGCAATCGCTGCCGGCTATTTCCAGAGTAAGTTGT +
Preference number: 6 (lower is better)
Translates to: SLGWLLQPLSNL*QSLPAISRVSC
Trigger: ACAACTTACTCTGGAAATAGCCGGCAGCGATTGCAAGAGATTCGAGAGGGGCTGAAGCAGCCATCCAAGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000022531.14
ENSMUST00000038381.14
ENSMUST00000077981.7
ENSMUST00000173990.8
ENSMUST00000174166.2
ENSMUST00000174213.8
CDS CAA 90 bp ACAGGAGCATCTCCAGAAACAGACACGCACCAGGAATATGCATTGTaGACCGGTTCAAGATCTTCCACAGCCTGGAACACAGGCGATCAG +
Preference number: 6 (lower is better)
Translates to: TGASPETDTHQEYAL*TGSRSSTAWNTGDQ
Trigger: CTGATCGCCTGTGTTCCAGGCTGTGGAAGATCTTGAACCGGTCAACAATGCATATTCCTGGTGCGTGTCTGTTTCTGGAGATGCTCCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038381.14
CDS TCA 72 bp TCAGCCACTGATACCTTCCTTATGAAGACGCATTTCTaGCACAGGCCTTTCACCCCAGCACTTGAGAGGCTG +
Preference number: 6 (lower is better)
Translates to: SATDTFLMKTHF*HRPFTPALERL
Trigger: CAGCCTCTCAAGTGCTGGGGTGAAAGGCCTGTGTCAGAAATGCGTCTTCATAAGGAAGGTATCAGTGGCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038381.14
CDS TCA 72 bp TGGAACACAGGCGATCAGCCACTGATACCTTCCTTATaGAGACGCATTTCTGACACAGGCCTTTCACCCCAG +
Preference number: 6 (lower is better)
Translates to: WNTGDQPLIPSL*RRISDTGLSPQ
Trigger: CTGGGGTGAAAGGCCTGTGTCAGAAATGCGTCTTCATAAGGAAGGTATCAGTGGCTGATCGCCTGTGTTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038381.14
CDS TCA 72 bp GATCTTCCACAGCCTGGAACACAGGCGATCAGCCACTaGTACCTTCCTTATGAAGACGCATTTCTGACACAG +
Preference number: 6 (lower is better)
Translates to: DLPQPGTQAISH*YLPYEDAFLTQ
Trigger: CTGTGTCAGAAATGCGTCTTCATAAGGAAGGTATCAGTGGCTGATCGCCTGTGTTCCAGGCTGTGGAAGATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038381.14
CDS TCA 72 bp CTCCAGAAACAGACACGCACCAGGAATATGCATTGTTaGCCGGTTCAAGATCTTCCACAGCCTGGAACACAG +
Preference number: 6 (lower is better)
Translates to: LQKQTRTRNMHC*PVQDLPQPGTQ
Trigger: CTGTGTTCCAGGCTGTGGAAGATCTTGAACCGGTCAACAATGCATATTCCTGGTGCGTGTCTGTTTCTGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038381.14
CDS GCA 72 bp AGGAGCATCTCCAGAAACAGACACGCACCAGGAATATaGATTGTTGACCGGTTCAAGATCTTCCACAGCCTG +
Preference number: 6 (lower is better)
Translates to: RSISRNRHAPGI*IVDRFKIFHSL
Trigger: CAGGCTGTGGAAGATCTTGAACCGGTCAACAATGCATATTCCTGGTGCGTGTCTGTTTCTGGAGATGCTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038381.14
CDS CCA 72 bp TATGCATTGTTGACCGGTTCAAGATCTTCCACAGCCTaGAACACAGGCGATCAGCCACTGATACCTTCCTTA +
Preference number: 6 (lower is better)
Translates to: YALLTGSRSSTA*NTGDQPLIPSL
Trigger: TAAGGAAGGTATCAGTGGCTGATCGCCTGTGTTCCAGGCTGTGGAAGATCTTGAACCGGTCAACAATGCATA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038381.14
CDS CAA 72 bp AGGCAGGAGGGAATATCGGATTTCCCTGAGAGCTTTTaGATAAGGTCCAAACTTCGGGGTGGCTCTCATTTG +
Preference number: 6 (lower is better)
Translates to: RQEGISDFPESF*IRSKLRGGSHL
Trigger: CAAATGAGAGCCACCCCGAAGTTTGGACCTTATCAAAAAGCTCTCAGGGAAATCCGATATTCCCTCCTGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022531.14
ENSMUST00000038381.14
ENSMUST00000077981.7
ENSMUST00000173990.8
ENSMUST00000174166.2
ENSMUST00000174213.8
CDS CAA 72 bp TCTCCAGAAACAGACACGCACCAGGAATATGCATTGTaGACCGGTTCAAGATCTTCCACAGCCTGGAACACA +
Preference number: 6 (lower is better)
Translates to: SPETDTHQEYAL*TGSRSSTAWNT
Trigger: TGTGTTCCAGGCTGTGGAAGATCTTGAACCGGTCAACAATGCATATTCCTGGTGCGTGTCTGTTTCTGGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038381.14