Pregenerated sensors for LAT (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030742Ensembl transcript IDs: ENSMUST00000032997.8, ENSMUST00000205642.2, ENSMUST00000206793.2
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | CATGACATGGTCTGGCTGGAACCAGATTCATTCTCAGGCTTTATCAGAAGGTACAAGGCAGAGGTCAAATaGGATCCTCTTAGCGACACC | + |
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Preference number: 2 (lower is better) Translates to: HDMVWLEPDSFSGFIRRYKAEVK*DPLSDT Trigger: GGTGTCGCTAAGAGGATCCCATTTGACCTCTGCCTT...GTACCTTCTGATAAAGCCTGAGAATGAATCTGGTTCCAGCCAGACCATGTCATG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032997.8 ENSMUST00000206793.2 |
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| 3UTR CCA 72 bp | GGAAGATTCTCAGGCTGTGGCAAGGCAGAGGTCAAATaGGATCCTCTTAGCGACACCCCAGCAAGTCCAGTT | + |
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Preference number: 3 (lower is better) Translates to: GRFSGCGKAEVK*DPLSDTPASPV Trigger: AACTGGACTTGCTGGGGTGTCGCTAAGAGGATCCCATTTGACCTCTGCCTTGCCACAGCCTGAGAATCTTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032997.8 ENSMUST00000206793.2 |
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| 3UTR-3UTR CAA 90 bp | GTCACATGGCCTTTATTCCATGACATGGTCTGGCTGGAACCAGATTCATTCTCAAGAAGGTACAGAATATaGGGGACACAGACTGGACCC | + |
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Preference number: 3 (lower is better) Translates to: VTWPLFHDMVWLEPDSFSRRYRI*GTQTGP Trigger: GGGTCCAGTCTGTGTCCCCAATATTCTGTACCTTCT...TGAGAATGAATCTGGTTCCAGCCAGACCATGTCATGGAATAAAGGCCATGTGAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032997.8 ENSMUST00000206793.2 |
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| CDS-3UTR CCA 90 bp | TCTCAGGCTGTGGCAAGGCAGAGGTCAAATGGGATCCTCTTAGCGACACCCCAGGTGGGGATCTCGGGATaGGGAGCAGGTCTGGCTGCC | + |
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Preference number: 4 (lower is better) Translates to: SQAVARQRSNGILLATPQVGISG*GAGLAA Trigger: GGCAGCCAGACCTGCTCCCCATCCCGAGATCCCCAC...CTGGGGTGTCGCTAAGAGGATCCCATTTGACCTCTGCCTTGCCACAGCCTGAGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032997.8 ENSMUST00000206793.2 |
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| CDS-3UTR GCA 90 bp | TCTCAGGCTGTGGCAAGGCAGAGGTCAAATGGGATCCTCTTAGCGACACCCCAGATCCAGAGACGCCTCTaGGCTCTCCTCACTCTCAGG | + |
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Preference number: 4 (lower is better) Translates to: SQAVARQRSNGILLATPQIQRRL*ALLTLR Trigger: CCTGAGAGTGAGGAGAGCGCAGAGGCGTCTCTGGAT...CTGGGGTGTCGCTAAGAGGATCCCATTTGACCTCTGCCTTGCCACAGCCTGAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032997.8 ENSMUST00000206793.2 |
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| CDS-3UTR CCA 90 bp | ACATGGCCTTTATTCCATGACATGGTCTGGCTGGAACCAGATTCATTCTCAGGCGTGGGGATCTCGGGATaGGGAGCAGGTCTGGCTGCC | + |
|
Preference number: 4 (lower is better) Translates to: TWPLFHDMVWLEPDSFSGVGISG*GAGLAA Trigger: GGCAGCCAGACCTGCTCCCCATCCCGAGATCCCCAC...GCCTGAGAATGAATCTGGTTCCAGCCAGACCATGTCATGGAATAAAGGCCATGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032997.8 ENSMUST00000206793.2 |
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| CDS-3UTR TCA 90 bp | GTCACATGGCCTTTATTCCATGACATGGTCTGGCTGGAACCAGATTCATTCTCAGGGCAGCCAGGAGCGTaGCCAAGAAGGGCAGCAGCA | + |
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Preference number: 4 (lower is better) Translates to: VTWPLFHDMVWLEPDSFSGQPGA*PRRAAA Trigger: TGCTGCTGCCCTTCTTGGTCACGCTCCTGGCTGCCC...TGAGAATGAATCTGGTTCCAGCCAGACCATGTCATGGAATAAAGGCCATGTGAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032997.8 ENSMUST00000206793.2 |
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| CDS-3UTR GCA 90 bp | AGGGGAAGATTCTCAGGCTGTGGCAAGGCAGAGGTCAAATGGGATCCTCTTAGCCTGGTCACTGGCTGCTaGTCTGGGGACACATTCACA | + |
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Preference number: 4 (lower is better) Translates to: RGRFSGCGKAEVKWDPLSLVTGC*SGDTFT Trigger: TGTGAATGTGTCCCCAGAGCAGCAGCCAGTGACCAG...GCTAAGAGGATCCCATTTGACCTCTGCCTTGCCACAGCCTGAGAATCTTCCCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032997.8 ENSMUST00000206793.2 |
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| CDS-3UTR GCA 90 bp | GTTAGGGGAAGATTCTCAGGCTGTGGCAAGGCAGAGGTCAAATGGGATCCTCTTCTGGTCACTGGCTGCTaGTCTGGGGACACATTCACA | + |
|
Preference number: 4 (lower is better) Translates to: VRGRFSGCGKAEVKWDPLLVTGC*SGDTFT Trigger: TGTGAATGTGTCCCCAGAGCAGCAGCCAGTGACCAG...AAGAGGATCCCATTTGACCTCTGCCTTGCCACAGCCTGAGAATCTTCCCCTAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032997.8 ENSMUST00000206793.2 |
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| CDS-3UTR TCA 90 bp | GACAATAAGTTAGGGGAAGATTCTCAGGCTGTGGCAAGGCAGAGGTCAAATGGGCGGGGGACGGTTATTTaGGGTGGCTTGATGAGGATG | + |
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Preference number: 4 (lower is better) Translates to: DNKLGEDSQAVARQRSNGRGTVI*GGLMRM Trigger: CATCCTCATCAAGCCACCTCAAATAACCGTCCCCCG...CCCATTTGACCTCTGCCTTGCCACAGCCTGAGAATCTTCCCCTAACTTATTGTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032997.8 ENSMUST00000206793.2 |
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| CDS-3UTR TCA 90 bp | TTAGGGGAAGATTCTCAGGCTGTGGCAAGGCAGAGGTCAAATGGGATCCTCTTAGGGGTGGGAAGGAAGTaGCTAGAGGGTAGGAAACAG | + |
|
Preference number: 4 (lower is better) Translates to: LGEDSQAVARQRSNGILLGVGRK*LEGRKQ Trigger: CTGTTTCCTACCCTCTAGTCACTTCCTTCCCACCCC...TAAGAGGATCCCATTTGACCTCTGCCTTGCCACAGCCTGAGAATCTTCCCCTAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032997.8 ENSMUST00000206793.2 |
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| CDS-3UTR GCA 90 bp | GTCACATGGCCTTTATTCCATGACATGGTCTGGCTGGAACCAGATTCATTCTCAATCCAGAGACGCCTCTaGGCTCTCCTCACTCTCAGG | + |
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Preference number: 4 (lower is better) Translates to: VTWPLFHDMVWLEPDSFSIQRRL*ALLTLR Trigger: CCTGAGAGTGAGGAGAGCGCAGAGGCGTCTCTGGAT...TGAGAATGAATCTGGTTCCAGCCAGACCATGTCATGGAATAAAGGCCATGTGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032997.8 ENSMUST00000206793.2 |
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| CDS-3UTR CCA 90 bp | GTCACATGGCCTTTATTCCATGACATGGTCTGGCTGGAACCAGATTCATTCTCAGAAGATGGCATCCGATaGGAACCCCCAAGGGGCTGT | + |
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Preference number: 4 (lower is better) Translates to: VTWPLFHDMVWLEPDSFSEDGIR*EPPRGC Trigger: ACAGCCCCTTGGGGGTTCCCATCGGATGCCATCTTC...TGAGAATGAATCTGGTTCCAGCCAGACCATGTCATGGAATAAAGGCCATGTGAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032997.8 ENSMUST00000206793.2 |
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| CDS-3UTR CCA 90 bp | CATGACATGGTCTGGCTGGAACCAGATTCATTCTCAGGCTTTATCAGAAGGTACGAAGATGGCATCCGATaGGAACCCCCAAGGGGCTGT | + |
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Preference number: 4 (lower is better) Translates to: HDMVWLEPDSFSGFIRRYEDGIR*EPPRGC Trigger: ACAGCCCCTTGGGGGTTCCCATCGGATGCCATCTTC...GTACCTTCTGATAAAGCCTGAGAATGAATCTGGTTCCAGCCAGACCATGTCATG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032997.8 ENSMUST00000206793.2 |
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| CDS-3UTR TCA 90 bp | GAAGATTCTCAGGCTGTGGCAAGGCAGAGGTCAAATGGGATCCTCTTAGCGACAACTGTTGGCATCATCTaGATTCTGCTGGGAAGATGG | + |
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Preference number: 4 (lower is better) Translates to: EDSQAVARQRSNGILLATTVGII*ILLGRW Trigger: CCATCTTCCCAGCAGAATTCAGATGATGCCAACAGT...TGTCGCTAAGAGGATCCCATTTGACCTCTGCCTTGCCACAGCCTGAGAATCTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032997.8 |
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| CDS-3UTR TCA 90 bp | GCTGGAACCAGATTCATTCTCAGGCTTTATCAGAAGGTACAGAATATTGGGGACCGGGGGACGGTTATTTaGGGTGGCTTGATGAGGATG | + |
|
Preference number: 4 (lower is better) Translates to: AGTRFILRLYQKVQNIGDRGTVI*GGLMRM Trigger: CATCCTCATCAAGCCACCTCAAATAACCGTCCCCCG...GTCCCCAATATTCTGTACCTTCTGATAAAGCCTGAGAATGAATCTGGTTCCAGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032997.8 ENSMUST00000206793.2 |
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| CDS-3UTR TCA 90 bp | TGGCTGGAACCAGATTCATTCTCAGGCTTTATCAGAAGGTACAGAATATTGGGGGGGGTGGGAAGGAAGTaGCTAGAGGGTAGGAAACAG | + |
|
Preference number: 4 (lower is better) Translates to: WLEPDSFSGFIRRYRILGGVGRK*LEGRKQ Trigger: CTGTTTCCTACCCTCTAGTCACTTCCTTCCCACCCC...CCCCAATATTCTGTACCTTCTGATAAAGCCTGAGAATGAATCTGGTTCCAGCCA 49% GC, longest homopolymer 8 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032997.8 ENSMUST00000206793.2 |
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| CDS-3UTR TCA 90 bp | TGGCCTTTATTCCATGACATGGTCTGGCTGGAACCAGATTCATTCTCAGGCTTTGGCTGGCTCATCATCTaGATTCTGCTGGGAAGATGG | + |
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Preference number: 4 (lower is better) Translates to: WPLFHDMVWLEPDSFSGFGWLII*ILLGRW Trigger: CCATCTTCCCAGCAGAATTCAGATGATGAGCCAGCC...AAAGCCTGAGAATGAATCTGGTTCCAGCCAGACCATGTCATGGAATAAAGGCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000206793.2 |
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| CDS-3UTR CCA 90 bp | TGGCCTTTATTCCATGACATGGTCTGGCTGGAACCAGATTCATTCTCAGGCTTTCACTGGCTGCTGCTCTaGGGACACATTCACATACTC | + |
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Preference number: 4 (lower is better) Translates to: WPLFHDMVWLEPDSFSGFHWLLL*GHIHIL Trigger: GAGTATGTGAATGTGTCCCCAGAGCAGCAGCCAGTG...AAAGCCTGAGAATGAATCTGGTTCCAGCCAGACCATGTCATGGAATAAAGGCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032997.8 ENSMUST00000206793.2 |
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| CDS-3UTR GCA 90 bp | TTAGGGGAAGATTCTCAGGCTGTGGCAAGGCAGAGGTCAAATGGGATCCTCTTAGTCTTCATCCTCATCTaGATCCACATTCTTACAGGC | + |
|
Preference number: 4 (lower is better) Translates to: LGEDSQAVARQRSNGILLVFILI*IHILTG Trigger: GCCTGTAAGAATGTGGATGCAGATGAGGATGAAGAC...TAAGAGGATCCCATTTGACCTCTGCCTTGCCACAGCCTGAGAATCTTCCCCTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032997.8 ENSMUST00000206793.2 |
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| CDS-3UTR GCA 90 bp | GTCACATGGCCTTTATTCCATGACATGGTCTGGCTGGAACCAGATTCATTCTCAAACTCTCTGTGGAAGTaGTGTCATAGGAGACTGGCA | + |
|
Preference number: 4 (lower is better) Translates to: VTWPLFHDMVWLEPDSFSNSLWK*CHRRLA Trigger: TGCCAGTCTCCTATGACAGCACTTCCACAGAGAGTT...TGAGAATGAATCTGGTTCCAGCCAGACCATGTCATGGAATAAAGGCCATGTGAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032997.8 ENSMUST00000206793.2 |
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| CDS-3UTR GCA 90 bp | TGGCTGGAACCAGATTCATTCTCAGGCTTTATCAGAAGGTACAGAATATTGGGGCTGGTTCTCGTAGCTTaGCACACTGTTGGCATCATC | + |
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Preference number: 4 (lower is better) Translates to: WLEPDSFSGFIRRYRILGLVLVA*HTVGII Trigger: GATGATGCCAACAGTGTGGCAAGCTACGAGAACCAG...CCCCAATATTCTGTACCTTCTGATAAAGCCTGAGAATGAATCTGGTTCCAGCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032997.8 |
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| CDS-3UTR CCA 90 bp | CTGGCTGGAACCAGATTCATTCTCAGGCTTTATCAGAAGGTACAGAATATTGGGCACATTCTTACAGGCTaGCTCCTGGTTCTCGTAGCT | + |
|
Preference number: 4 (lower is better) Translates to: LAGTRFILRLYQKVQNIGHILTG*LLVLVA Trigger: AGCTACGAGAACCAGGAGCCAGCCTGTAAGAATGTG...CCCAATATTCTGTACCTTCTGATAAAGCCTGAGAATGAATCTGGTTCCAGCCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032997.8 |
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| CDS-3UTR CCA 90 bp | TTATTCCATGACATGGTCTGGCTGGAACCAGATTCATTCTCAGGCTTTATCAGACACTGGCTGCTGCTCTaGGGACACATTCACATACTC | + |
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Preference number: 4 (lower is better) Translates to: LFHDMVWLEPDSFSGFIRHWLLL*GHIHIL Trigger: GAGTATGTGAATGTGTCCCCAGAGCAGCAGCCAGTG...TCTGATAAAGCCTGAGAATGAATCTGGTTCCAGCCAGACCATGTCATGGAATAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032997.8 ENSMUST00000206793.2 |
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| CDS-3UTR GCA 90 bp | GCTGGAACCAGATTCATTCTCAGGCTTTATCAGAAGGTACAGAATATTGGGGACAACTCTCTGTGGAAGTaGTGTCATAGGAGACTGGCA | + |
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Preference number: 4 (lower is better) Translates to: AGTRFILRLYQKVQNIGDNSLWK*CHRRLA Trigger: TGCCAGTCTCCTATGACAGCACTTCCACAGAGAGTT...GTCCCCAATATTCTGTACCTTCTGATAAAGCCTGAGAATGAATCTGGTTCCAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032997.8 ENSMUST00000206793.2 |
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| CDS-3UTR GCA 90 bp | GCTGGAACCAGATTCATTCTCAGGCTTTATCAGAAGGTACAGAATATTGGGGACGCATCATCTGAATTCTaGTGGGAAGATGGCATCCGA | + |
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Preference number: 4 (lower is better) Translates to: AGTRFILRLYQKVQNIGDASSEF*WEDGIR Trigger: TCGGATGCCATCTTCCCAGCAGAATTCAGATGATGC...GTCCCCAATATTCTGTACCTTCTGATAAAGCCTGAGAATGAATCTGGTTCCAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032997.8 |
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| CDS-3UTR GCA 90 bp | GCTGGAACCAGATTCATTCTCAGGCTTTATCAGAAGGTACAGAATATTGGGGACTCATCATCTGAATTCTaGTGGGAAGATGGCATCCGA | + |
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Preference number: 4 (lower is better) Translates to: AGTRFILRLYQKVQNIGDSSSEF*WEDGIR Trigger: TCGGATGCCATCTTCCCAGCAGAATTCAGATGATGA...GTCCCCAATATTCTGTACCTTCTGATAAAGCCTGAGAATGAATCTGGTTCCAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000206793.2 |
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| CDS CCA 90 bp | GCTTCTTGGGTACAAACTCTCTGTGGAAGTGCTGTCATAGGAGACTaGCAACTCACGGCAGCGCACGCACAGGGCAGCCAGGAGCGTGAC | + |
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Preference number: 5 (lower is better) Translates to: ASWVQTLCGSAVIGD*QLTAAHAQGSQERD Trigger: GTCACGCTCCTGGCTGCCCTGTGCGTGCGCTGCCGTGAGTTGCCAGTCTCCTATGACAGCACTTCCACAGAGAGTTTGTACCCAAGAAGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032997.8 ENSMUST00000205642.2 ENSMUST00000206793.2 |
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| CDS-3UTR CAA 90 bp | TCTCAGGCTGTGGCAAGGCAGAGGTCAAATGGGATCCTCTTAGCGACACCCCAGTCTCCAAGGTCAGGGTaGCTAGGCACAGGAGCAGAG | + |
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Preference number: 5 (lower is better) Translates to: SQAVARQRSNGILLATPQSPRSG*LGTGAE Trigger: CTCTGCTCCTGTGCCTAGCAACCCTGACCTTGGAGA...CTGGGGTGTCGCTAAGAGGATCCCATTTGACCTCTGCCTTGCCACAGCCTGAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032997.8 ENSMUST00000206793.2 |
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| CDS GCA 90 bp | TCATCTGCATCCACATTCTTACAGGCTGGCTCATCATCTGAATTCTaGTGGGAAGATGGCATCCGATGGGAACCCCCAAGGGGCTGTGGG | + |
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Preference number: 5 (lower is better) Translates to: SSASTFLQAGSSSEF*WEDGIRWEPPRGCG Trigger: CCCACAGCCCCTTGGGGGTTCCCATCGGATGCCATCTTCCCAGCAGAATTCAGATGATGAGCCAGCCTGTAAGAATGTGGATGCAGATGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000206793.2 |
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| CDS CCA 90 bp | GGACGGCAGCAGGACTACTGTCAGGCAGCACCACTAGGTAGCCGTTaGGATAGTCGTCTTCATCCTCATCTGCATCCACATTCTTACAGG | + |
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Preference number: 5 (lower is better) Translates to: GRQQDYCQAAPLGSR*DSRLHPHLHPHSYR Trigger: CCTGTAAGAATGTGGATGCAGATGAGGATGAAGACGACTATCCCAACGGCTACCTAGTGGTGCTGCCTGACAGTAGTCCTGCTGCCGTCC 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032997.8 ENSMUST00000206793.2 |
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| CDS-3UTR CAA 90 bp | AGGGGAAGATTCTCAGGCTGTGGCAAGGCAGAGGTCAAATGGGATCCTCTTAGCCCTGGTTCTCGTAGCTaGCCACACTGTTGGCATCAT | + |
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Preference number: 5 (lower is better) Translates to: RGRFSGCGKAEVKWDPLSPGSRS*PHCWHH Trigger: ATGATGCCAACAGTGTGGCAAGCTACGAGAACCAGG...GCTAAGAGGATCCCATTTGACCTCTGCCTTGCCACAGCCTGAGAATCTTCCCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032997.8 |
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| CDS TCA 90 bp | TTCATCCTCATCTGCATCCACATTCTTACAGGCTGGCTCATCATCTaGATTCTGCTGGGAAGATGGCATCCGATGGGAACCCCCAAGGGG | + |
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Preference number: 5 (lower is better) Translates to: FILICIHILTGWLII*ILLGRWHPMGTPKG Trigger: CCCCTTGGGGGTTCCCATCGGATGCCATCTTCCCAGCAGAATTCAGATGATGAGCCAGCCTGTAAGAATGTGGATGCAGATGAGGATGAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000206793.2 |
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| CDS-3UTR CAA 90 bp | ACATGGCCTTTATTCCATGACATGGTCTGGCTGGAACCAGATTCATTCTCAGGCTCTCCAAGGTCAGGGTaGCTAGGCACAGGAGCAGAG | + |
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Preference number: 5 (lower is better) Translates to: TWPLFHDMVWLEPDSFSGSPRSG*LGTGAE Trigger: CTCTGCTCCTGTGCCTAGCAACCCTGACCTTGGAGA...GCCTGAGAATGAATCTGGTTCCAGCCAGACCATGTCATGGAATAAAGGCCATGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032997.8 ENSMUST00000206793.2 |
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| CDS-3UTR CAA 90 bp | CTGGCTGGAACCAGATTCATTCTCAGGCTTTATCAGAAGGTACAGAATATTGGGTCGGGGGACGGTTATTaGAGGTGGCTTGATGAGGAT | + |
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Preference number: 5 (lower is better) Translates to: LAGTRFILRLYQKVQNIGSGDGY*RWLDED Trigger: ATCCTCATCAAGCCACCTCAAATAACCGTCCCCCGA...CCCAATATTCTGTACCTTCTGATAAAGCCTGAGAATGAATCTGGTTCCAGCCAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032997.8 ENSMUST00000206793.2 |
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| CDS-3UTR CAA 90 bp | GCTGGAACCAGATTCATTCTCAGGCTTTATCAGAAGGTACAGAATATTGGGGACTCGGGGGACGGTTATTaGAGGTGGCTTGATGAGGAT | + |
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Preference number: 5 (lower is better) Translates to: AGTRFILRLYQKVQNIGDSGDGY*RWLDED Trigger: ATCCTCATCAAGCCACCTCAAATAACCGTCCCCCGA...GTCCCCAATATTCTGTACCTTCTGATAAAGCCTGAGAATGAATCTGGTTCCAGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032997.8 ENSMUST00000206793.2 |
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| CDS GCA 72 bp | GAGTTCACAGAGGCCAGCTCAGCCCTGGTCACTGGCTaGTGCTCTGGGGACACATTCACATACTCCCGGCTC | + |
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Preference number: 6 (lower is better) Translates to: EFTEASSALVTG*CSGDTFTYSRL Trigger: GAGCCGGGAGTATGTGAATGTGTCCCCAGAGCAGCAGCCAGTGACCAGGGCTGAGCTGGCCTCTGTGAACTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032997.8 ENSMUST00000206793.2 |
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| CDS CAA 90 bp | TCTTCACACGACTCCACAGAGAAGGCACTGTCTCCAAGGTCAGGGTaGCTAGGCACAGGAGCAGAGGAGACAACAGGGACGGCAGCAGGA | + |
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Preference number: 6 (lower is better) Translates to: SSHDSTEKALSPRSG*LGTGAEETTGTAAG Trigger: TCCTGCTGCCGTCCCTGTTGTCTCCTCTGCTCCTGTGCCTAGCAACCCTGACCTTGGAGACAGTGCCTTCTCTGTGGAGTCGTGTGAAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032997.8 ENSMUST00000206793.2 |
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| CDS CCA 72 bp | ACATTCTTACAGGCTGGCTCATCATCTGAATTCTGCTaGGAAGATGGCATCCGATGGGAACCCCCAAGGGGC | + |
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Preference number: 6 (lower is better) Translates to: TFLQAGSSSEFC*EDGIRWEPPRG Trigger: GCCCCTTGGGGGTTCCCATCGGATGCCATCTTCCCAGCAGAATTCAGATGATGAGCCAGCCTGTAAGAATGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000206793.2 |
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| CDS CCA 72 bp | GTCTTCATCCTCATCTGCATCCACATTCTTACAGGCTaGCTCCTGGTTCTCGTAGCTTGCCACACTGTTGGC | + |
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Preference number: 6 (lower is better) Translates to: VFILICIHILTG*LLVLVACHTVG Trigger: GCCAACAGTGTGGCAAGCTACGAGAACCAGGAGCCAGCCTGTAAGAATGTGGATGCAGATGAGGATGAAGAC 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032997.8 |
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| CDS CCA 72 bp | CAGGACTACTGTCAGGCAGCACCACTAGGTAGCCGTTaGGATAGTCGTCTTCATCCTCATCTGCATCCACAT | + |
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Preference number: 6 (lower is better) Translates to: QDYCQAAPLGSR*DSRLHPHLHPH Trigger: ATGTGGATGCAGATGAGGATGAAGACGACTATCCCAACGGCTACCTAGTGGTGCTGCCTGACAGTAGTCCTG 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032997.8 ENSMUST00000206793.2 |
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| CDS CCA 72 bp | GGAAACAGCAGGTGTTCGGGGGACGGTTATTTGAGGTaGCTTGATGAGGATGCTTCTTGGGTACAAACTCTC | + |
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Preference number: 6 (lower is better) Translates to: GNSRCSGDGYLR*LDEDASWVQTL Trigger: GAGAGTTTGTACCCAAGAAGCATCCTCATCAAGCCACCTCAAATAACCGTCCCCCGAACACCTGCTGTTTCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032997.8 ENSMUST00000206793.2 |
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| CDS CAA 72 bp | AGGGTAGGAAACAGCAGGTGTTCGGGGGACGGTTATTaGAGGTGGCTTGATGAGGATGCTTCTTGGGTACAA | + |
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Preference number: 6 (lower is better) Translates to: RVGNSRCSGDGY*RWLDEDASWVQ Trigger: TTGTACCCAAGAAGCATCCTCATCAAGCCACCTCAAATAACCGTCCCCCGAACACCTGCTGTTTCCTACCCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032997.8 ENSMUST00000206793.2 |
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