RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LARS (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024493

Ensembl transcript IDs: ENSMUST00000097590.5, ENSMUST00000235432.2, ENSMUST00000235845.2, ENSMUST00000237587.2

Found 258 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CACTCAGTCCTGGGTTCTATAACCCCGCACCACATATGCAAGGCATaGTGGCGCCACCTGTATTTCCAGCCCTCAGTAGACAGAGGCAGG +
Preference number: 1 (lower is better)
Translates to: HSVLGSITPHHICKA*WRHLYFQPSVDRGR
Trigger: CCTGCCTCTGTCTACTGAGGGCTGGAAATACAGGTGGCGCCATCATGCCTTGCATATGTGGTGCGGGGTTATAGAACCCAGGACTGAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR TCA 90 bp CTCCCATTAACTCCTTCACAACCGGCACCACTCCGTTGTGCTTGGTaGAGCCTTGGTATGACATATTCCTGGCTGCTCTCTGGGTACAGA +
Preference number: 1 (lower is better)
Translates to: LPLTPSQPAPLRCAW*SLGMTYSWLLSGYR
Trigger: TCTGTACCCAGAGAGCAGCCAGGAATATGTCATACCAAGGCTTCACCAAGCACAACGGAGTGGTGCCGGTTGTGAAGGAGTTAATGGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR GCA 90 bp ATTTCCTCTCCCATTAACTCCTTCACAACCGGCACCACTCCGTTGTaGTTGGTGAAGCCTTGGTATGACATATTCCTGGCTGCTCTCTGG +
Preference number: 1 (lower is better)
Translates to: ISSPINSFTTGTTPL*LVKPWYDIFLAALW
Trigger: CCAGAGAGCAGCCAGGAATATGTCATACCAAGGCTTCACCAAGCACAACGGAGTGGTGCCGGTTGTGAAGGAGTTAATGGGAGAGGAAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR CCA 90 bp AACTCCTTCACAACCGGCACCACTCCGTTGTGCTTGGTGAAGCCTTaGTATGACATATTCCTGGCTGCTCTCTGGGTACAGATGAAGATG +
Preference number: 1 (lower is better)
Translates to: NSFTTGTTPLCLVKP*YDIFLAALWVQMKM
Trigger: CATCTTCATCTGTACCCAGAGAGCAGCCAGGAATATGTCATACCAAGGCTTCACCAAGCACAACGGAGTGGTGCCGGTTGTGAAGGAGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR TCA 90 bp CCTTGCCTGATGTCGATTTTGGTGGAGAAGTGCCCACTCGATGGCTaGGGATTTACTAGGGAAACTGGCACACCAGGTTCTGTTCTGAAA +
Preference number: 1 (lower is better)
Translates to: PCLMSILVEKCPLDG*GFTRETGTPGSVLK
Trigger: TTTCAGAACAGAACCTGGTGTGCCAGTTTCCCTAGTAAATCCTCAGCCATCGAGTGGGCACTTCTCCACCAAAATCGACATCAGGCAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237587.2
3UTR GCA 90 bp GAGCCCAAGGGATTTCATAATGTCCCACTGGTACTTAGAAGATCCTaGTTTGGCGGCAGCTTTGCTCTTTTTCCCTTTGGCTTTATCCCT +
Preference number: 1 (lower is better)
Translates to: EPKGFHNVPLVLRRS*FGGSFALFPFGFIP
Trigger: AGGGATAAAGCCAAAGGGAAAAAGAGCAAAGCTGCCGCCAAAGCAGGATCTTCTAAGTACCAGTGGGACATTATGAAATCCCTTGGGCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR CCA 90 bp ACTATGTCGTCATCAGAGAGCCCAAGGGATTTCATAATGTCCCACTaGTACTTAGAAGATCCTGCTTTGGCGGCAGCTTTGCTCTTTTTC +
Preference number: 1 (lower is better)
Translates to: TMSSSESPRDFIMSH*YLEDPALAAALLFF
Trigger: GAAAAAGAGCAAAGCTGCCGCCAAAGCAGGATCTTCTAAGTACCAGTGGGACATTATGAAATCCCTTGGGCTCTCTGATGACGACATAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR CCA 90 bp TTGTGCTTGGTGAAGCCTTGGTATGACATATTCCTGGCTGCTCTCTaGGTACAGATGAAGATGTCTCCATTTGCTGTCTCAAACCCAATG +
Preference number: 1 (lower is better)
Translates to: LCLVKPWYDIFLAAL*VQMKMSPFAVSNPM
Trigger: CATTGGGTTTGAGACAGCAAATGGAGACATCTTCATCTGTACCCAGAGAGCAGCCAGGAATATGTCATACCAAGGCTTCACCAAGCACAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR TCA 90 bp TCAGGCCGCTTAATTTTGATGGATATGGTTCAAGCACCTTCAGTTTaGCCAGAGTATATTCCTGAGGTCCAACACCCTCTCCAGTTTGTC +
Preference number: 1 (lower is better)
Translates to: SGRLILMDMVQAPSV*PEYIPEVQHPLQFV
Trigger: GACAAACTGGAGAGGGTGTTGGACCTCAGGAATATACTCTGGTCAAACTGAAGGTGCTTGAACCATATCCATCAAAATTAAGCGGCCTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR GCA 90 bp CATATTCCTGGCTGCTCTCTGGGTACAGATGAAGATGTCTCCATTTaGTGTCTCAAACCCAATGTATTTCATATCAGGCCGAACCCAACA +
Preference number: 1 (lower is better)
Translates to: HIPGCSLGTDEDVSI*CLKPNVFHIRPNPT
Trigger: TGTTGGGTTCGGCCTGATATGAAATACATTGGGTTTGAGACAGCAAATGGAGACATCTTCATCTGTACCCAGAGAGCAGCCAGGAATATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR GCA 90 bp TCAAACCCAATGTATTTCATATCAGGCCGAACCCAACAATTTGTCTaGCCAAACATAGTCTCAGGTCTGAGTGTAGCAGCTACTAGGAAG +
Preference number: 1 (lower is better)
Translates to: SNPMYFISGRTQQFV*PNIVSGLSVAATRK
Trigger: CTTCCTAGTAGCTGCTACACTCAGACCTGAGACTATGTTTGGGCAGACAAATTGTTGGGTTCGGCCTGATATGAAATACATTGGGTTTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR-3UTR TCA 90 bp GGTTGTCAGGGTAATGTGCTGCCAGACGGGGTAGTTCTTTGCCACATAGATGGTCAGTGTGAGGGCCTCTaGGCTGGCTGCTTGTCAGTC +
Preference number: 2 (lower is better)
Translates to: GCQGNVLPDGVVLCHIDGQCEGL*AGCLSV
Trigger: GACTGACAAGCAGCCAGCTCAGAGGCCCTCACACTG...ACCATCTATGTGGCAAAGAACTACCCCGTCTGGCAGCACATTACCCTGACAACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000235845.2
ENSMUST00000237587.2
3UTR-3UTR CCA 90 bp TGTGCTGCCAGACGGGGTAGTTCTTTGCCACATAGATGGTGCAGTGTGAGGGCCTCTTTGCCACATAGATaGTGCAGTGTGAGGGCCTCT +
Preference number: 2 (lower is better)
Translates to: CAARRGSSLPHRWCSVRASLPHR*CSVRAS
Trigger: AGAGGCCCTCACACTGCACCATCTATGTGGCAAAGA...GGCCCTCACACTGCACCATCTATGTGGCAAAGAACTACCCCGTCTGGCAGCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000235845.2
ENSMUST00000237587.2
3UTR-3UTR GCA 90 bp CCACATAGATGGTGCAGTGTGAGGGCCTCTGAGCTGGCTGCTTGTCAGTCTTCTGACGGGGTAGTTCTTTaGCACATAGATGGTGCAGTG +
Preference number: 2 (lower is better)
Translates to: PHRWCSVRASELAACQSSDGVVL*HIDGAV
Trigger: CACTGCACCATCTATGTGGCAAAGAACTACCCCGTC...AGAAGACTGACAAGCAGCCAGCTCAGAGGCCCTCACACTGCACCATCTATGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000235845.2
ENSMUST00000237587.2
3UTR CAA 90 bp TCCTCTCCCATTAACTCCTTCACAACCGGCACCACTCCGTTGTGCTaGGTGAAGCCTTGGTATGACATATTCCTGGCTGCTCTCTGGGTA +
Preference number: 2 (lower is better)
Translates to: SSPINSFTTGTTPLC*VKPWYDIFLAALWV
Trigger: TACCCAGAGAGCAGCCAGGAATATGTCATACCAAGGCTTCACCAAGCACAACGGAGTGGTGCCGGTTGTGAAGGAGTTAATGGGAGAGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR CAA 90 bp CGCCGAGGCCCCAACAGAGGATCATCAAACCGCATCAGCTTCACTTaGGAAAGATCTTTGATCCCTCGGTCCGTTTTCATCAAGCGTCTG +
Preference number: 2 (lower is better)
Translates to: RRGPNRGSSNRISFT*ERSLIPRSVFIKRL
Trigger: CAGACGCTTGATGAAAACGGACCGAGGGATCAAAGATCTTTCCAAAGTGAAGCTGATGCGGTTTGATGATCCTCTGTTGGGGCCTCGGCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237587.2
3UTR-3UTR TCA 90 bp ACCGGCACCACTCCGTTGTGCTTGGTGAAGCCTTGGTATGACATATTCCTGGCTCACATATGCAAGGCATaGTGGCGCCACCTGTATTTC +
Preference number: 2 (lower is better)
Translates to: TGTTPLCLVKPWYDIFLAHICKA*WRHLYF
Trigger: GAAATACAGGTGGCGCCATCATGCCTTGCATATGTG...AGCCAGGAATATGTCATACCAAGGCTTCACCAAGCACAACGGAGTGGTGCCGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR-3UTR CCA 90 bp AAGCACCTTCAGTTTGACCAGAGTATATTCCTGAGGTCCAACACCCTCTCCAGTTGTCAGCGCATGCCTTaGCCACTCAGTCCTGGGTTC +
Preference number: 2 (lower is better)
Translates to: KHLQFDQSIFLRSNTLSSCQRMP*PLSPGF
Trigger: GAACCCAGGACTGAGTGGCCAAGGCATGCGCTGACA...ACTGGAGAGGGTGTTGGACCTCAGGAATATACTCTGGTCAAACTGAAGGTGCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR CAA 90 bp AGGATTTCCTCTCCCATTAACTCCTTCACAACCGGCACCACTCCGTaGTGCTTGGTGAAGCCTTGGTATGACATATTCCTGGCTGCTCTC +
Preference number: 2 (lower is better)
Translates to: RISSPINSFTTGTTP*CLVKPWYDIFLAAL
Trigger: GAGAGCAGCCAGGAATATGTCATACCAAGGCTTCACCAAGCACAACGGAGTGGTGCCGGTTGTGAAGGAGTTAATGGGAGAGGAAATCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR-3UTR TCA 90 bp CAGGACTGGCACCGGTTCAAACGGCAGGACCATGTCATCCCTAATTCCAAACTTACCAGAGTATATTCCTaGGGTCCAACACCCTCTCCA +
Preference number: 2 (lower is better)
Translates to: QDWHRFKRQDHVIPNSKLTRVYS*GPTPSP
Trigger: TGGAGAGGGTGTTGGACCTCAGGAATATACTCTGGT...AAGTTTGGAATTAGGGATGACATGGTCCTGCCGTTTGAACCGGTGCCAGTCCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR-3UTR TCA 90 bp CACGTGGAAAACGGCGTTCTCGGAAATGAGTGTCTTCTCACTGTGCTCTCTCCCCCTCAGAGGCAAACTTaGCTTCTATGTGTTCCAGCT +
Preference number: 2 (lower is better)
Translates to: HVENGVLGNECLLTVLSPPQRQT*LLCVPA
Trigger: AGCTGGAACACATAGAAGTCAAGTTTGCCTCTGAGG...GGGAGAGAGCACAGTGAGAAGACACTCATTTCCGAGAACGCCGTTTTCCACGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000237587.2
3UTR-3UTR GCA 90 bp ACAGCAGGAAGATTTCCAATCCCTGGGATTTCCAGGACTGGCACCGGTTCAAACCTTCAAGTCTCTGAGTaGTGCAAGATCATCCGGGGA +
Preference number: 2 (lower is better)
Translates to: TAGRFPIPGISRTGTGSNLQVSE*CKIIRG
Trigger: TCCCCGGATGATCTTGCAGCACTCAGAGACTTGAAG...GTTTGAACCGGTGCCAGTCCTGGAAATCCCAGGGATTGGAAATCTTCCTGCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR-3UTR GCA 90 bp GGTTGTCAGGGTAATGTGCTGCCAGACGGGGTAGTTCTTTGCCACATAGATGGTGACGGGGTAGTTCTTTaGCACATAGATGGTGCAGTG +
Preference number: 2 (lower is better)
Translates to: GCQGNVLPDGVVLCHIDGDGVVL*HIDGAV
Trigger: CACTGCACCATCTATGTGGCAAAGAACTACCCCGTC...ACCATCTATGTGGCAAAGAACTACCCCGTCTGGCAGCACATTACCCTGACAACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000235845.2
ENSMUST00000237587.2
3UTR CAA 90 bp GTCCGTTTTCATCAAGCGTCTGATTATGGACTCACAGCTATCTCCTaGCCTGATGTCGATTTTGGTGGAGAAGTGCCCACTCGATGGCTG +
Preference number: 2 (lower is better)
Translates to: VRFHQASDYGLTAIS*PDVDFGGEVPTRWL
Trigger: CAGCCATCGAGTGGGCACTTCTCCACCAAAATCGACATCAGGCAAGGAGATAGCTGTGAGTCCATAATCAGACGCTTGATGAAAACGGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237587.2
3UTR-3UTR TCA 90 bp GGTTGTCAGGGTAATGTGCTGCCAGACGGGGTAGTTCTTTGCCACATAGATGGTCATGTGCTACTTCCATaGGATACTGTGAGGAACGGA +
Preference number: 2 (lower is better)
Translates to: GCQGNVLPDGVVLCHIDGHVLLP*DTVRNG
Trigger: TCCGTTCCTCACAGTATCTCATGGAAGTAGCACATG...ACCATCTATGTGGCAAAGAACTACCCCGTCTGGCAGCACATTACCCTGACAACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000235845.2
ENSMUST00000237587.2
3UTR-3UTR CCA 90 bp TGTGCTGCCAGACGGGGTAGTTCTTTGCCACATAGATGGTGCAGTGTGAGGGCCCTTCTTCCCTTTAGCTaGCATCATGTAATTCTTGAG +
Preference number: 2 (lower is better)
Translates to: CAARRGSSLPHRWCSVRALLPFS*HHVILE
Trigger: CTCAAGAATTACATGATGCCAGCTAAAGGGAAGAAG...GGCCCTCACACTGCACCATCTATGTGGCAAAGAACTACCCCGTCTGGCAGCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000235845.2
ENSMUST00000237587.2
3UTR CAA 90 bp CCTAGTTCACTAGCAATGACTTTGTTATCAGGCAACTTTCCATTGTaGGCCTCAAAGTGGCTCCGCAGGGTTGTCAGGGTAATGTGCTGC +
Preference number: 2 (lower is better)
Translates to: PSSLAMTLLSGNFPL*ASKWLRRVVRVMCC
Trigger: GCAGCACATTACCCTGACAACCCTGCGGAGCCACTTTGAGGCCAACAATGGAAAGTTGCCTGATAACAAAGTCATTGCTAGTGAACTAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000235845.2
ENSMUST00000237587.2
3UTR CAA 90 bp CTGCCTAGTTCACTAGCAATGACTTTGTTATCAGGCAACTTTCCATaGTTGGCCTCAAAGTGGCTCCGCAGGGTTGTCAGGGTAATGTGC +
Preference number: 2 (lower is better)
Translates to: LPSSLAMTLLSGNFP*LASKWLRRVVRVMC
Trigger: GCACATTACCCTGACAACCCTGCGGAGCCACTTTGAGGCCAACAATGGAAAGTTGCCTGATAACAAAGTCATTGCTAGTGAACTAGGCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000235845.2
ENSMUST00000237587.2
3UTR-3UTR GCA 90 bp GCCGAGGCCCCAACAGAGGATCATCAAACCGCATCAGCTTCACTTTGGAAAGATACAGGCCATGAGGCATaGATGATTGAATCAGGCTTT +
Preference number: 2 (lower is better)
Translates to: AEAPTEDHQTASASLWKDTGHEA*MIESGF
Trigger: AAAGCCTGATTCAATCATGCATGCCTCATGGCCTGT...ATCTTTCCAAAGTGAAGCTGATGCGGTTTGATGATCCTCTGTTGGGGCCTCGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237587.2
3UTR-3UTR CCA 90 bp CCTCTCCAGTTTGTCTGTCATGATCCATGCAAGGCTGTCCATCTTTTGGGGAATCTGAACGGCCAGTGGTaGGAAATAATCAAGCCAGTG +
Preference number: 2 (lower is better)
Translates to: PLQFVCHDPCKAVHLLGNLNGQW*EIIKPV
Trigger: CACTGGCTTGATTATTTCCCACCACTGGCCGTTCAG...ATTCCCCAAAAGATGGACAGCCTTGCATGGATCATGACAGACAAACTGGAGAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR-3UTR GCA 90 bp TTTCACGGTCATTCTGGCTCTGAATTTTCAGCTCATCACAAACAGTCACAGCAGGGCACCACTCCGTTGTaGTTGGTGAAGCCTTGGTAT +
Preference number: 2 (lower is better)
Translates to: FHGHSGSEFSAHHKQSQQGTTPL*LVKPWY
Trigger: ATACCAAGGCTTCACCAAGCACAACGGAGTGGTGCC...CTGCTGTGACTGTTTGTGATGAGCTGAAAATTCAGAGCCAGAATGACCGTGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR-3UTR GCA 90 bp TGCTCATCAAACTCCAGCTCTAAATCCAAGACTCTCGGCCCTTTCTTCTCCATGAGCAGTGTCCAGATGTaGTCACACAAATGTGGACAG +
Preference number: 2 (lower is better)
Translates to: CSSNSSSKSKTLGPFFSMSSVQM*SHKCGQ
Trigger: CTGTCCACATTTGTGTGAGCACATCTGGACACTGCT...CATGGAGAAGAAAGGGCCGAGAGTCTTGGATTTAGAGCTGGAGTTTGATGAGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237587.2
3UTR CAA 90 bp CCAAGGGATTTCATAATGTCCCACTGGTACTTAGAAGATCCTGCTTaGGCGGCAGCTTTGCTCTTTTTCCCTTTGGCTTTATCCCTCACT +
Preference number: 2 (lower is better)
Translates to: PRDFIMSHWYLEDPA*AAALLFFPLALSLT
Trigger: AGTGAGGGATAAAGCCAAAGGGAAAAAGAGCAAAGCTGCCGCCAAAGCAGGATCTTCTAAGTACCAGTGGGACATTATGAAATCCCTTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR-3UTR TCA 90 bp TTTCACGGTCATTCTGGCTCTGAATTTTCAGCTCATCACAAACAGTCACAGCAGCCAGTTTGTCTGTCATaGTCCATGCAAGGCTGTCCA +
Preference number: 2 (lower is better)
Translates to: FHGHSGSEFSAHHKQSQQPVCLS*SMQGCP
Trigger: TGGACAGCCTTGCATGGATCATGACAGACAAACTGG...CTGCTGTGACTGTTTGTGATGAGCTGAAAATTCAGAGCCAGAATGACCGTGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR-3UTR GCA 90 bp CTTTTTCTTCAAGTCTCTGAGTGCTGCAAGATCATCCGGGGAATCAGAAGGAACCTTTGGCGGCAGCTTTaGTCTTTTTCCCTTTGGCTT +
Preference number: 2 (lower is better)
Translates to: LFLQVSECCKIIRGIRRNLWRQL*SFSLWL
Trigger: AAGCCAAAGGGAAAAAGAGCAAAGCTGCCGCCAAAG...GTTCCTTCTGATTCCCCGGATGATCTTGCAGCACTCAGAGACTTGAAGAAAAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR-3UTR CCA 90 bp TTGTGCTTGGTGAAGCCTTGGTATGACATATTCCTGGCTGCTCTCTGGGTACAGTGCTCTTTTTCCCTTTaGCTTTATCCCTCACTACTA +
Preference number: 2 (lower is better)
Translates to: LCLVKPWYDIFLAALWVQCSFSL*LYPSLL
Trigger: TAGTAGTGAGGGATAAAGCCAAAGGGAAAAAGAGCA...CTGTACCCAGAGAGCAGCCAGGAATATGTCATACCAAGGCTTCACCAAGCACAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR CAA 90 bp TACTTAGAAGATCCTGCTTTGGCGGCAGCTTTGCTCTTTTTCCCTTaGGCTTTATCCCTCACTACTATATCTCCAGGTTTAGCACTGCTT +
Preference number: 2 (lower is better)
Translates to: YLEDPALAAALLFFP*ALSLTTISPGLALL
Trigger: AAGCAGTGCTAAACCTGGAGATATAGTAGTGAGGGATAAAGCCAAAGGGAAAAAGAGCAAAGCTGCCGCCAAAGCAGGATCTTCTAAGTA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR CAA 90 bp ATAATGTCCCACTGGTACTTAGAAGATCCTGCTTTGGCGGCAGCTTaGCTCTTTTTCCCTTTGGCTTTATCCCTCACTACTATATCTCCA +
Preference number: 2 (lower is better)
Translates to: IMSHWYLEDPALAAA*LFFPLALSLTTISP
Trigger: TGGAGATATAGTAGTGAGGGATAAAGCCAAAGGGAAAAAGAGCAAAGCTGCCGCCAAAGCAGGATCTTCTAAGTACCAGTGGGACATTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR CAA 90 bp TATTTCTTCAACTCTGGCAAACTGCCTAGTTCACTAGCAATGACTTaGTTATCAGGCAACTTTCCATTGTTGGCCTCAAAGTGGCTCCGC +
Preference number: 2 (lower is better)
Translates to: YFFNSGKLPSSLAMT*LSGNFPLLASKWLR
Trigger: GCGGAGCCACTTTGAGGCCAACAATGGAAAGTTGCCTGATAACAAAGTCATTGCTAGTGAACTAGGCAGTTTGCCAGAGTTGAAGAAATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000235845.2
ENSMUST00000237587.2
3UTR-3UTR CCA 90 bp ATTCCTGGCTGCTCTCTGGGTACAGATGAAGATGTCTCCATTTGCTGTCTCAAAAGGCTGTCCATCTTTTaGGGAATAAATAGTGTACCG +
Preference number: 2 (lower is better)
Translates to: IPGCSLGTDEDVSICCLKRLSIF*GINSVP
Trigger: CGGTACACTATTTATTCCCCAAAAGATGGACAGCCT...TTTGAGACAGCAAATGGAGACATCTTCATCTGTACCCAGAGAGCAGCCAGGAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR-3UTR CCA 90 bp TTTCACGGTCATTCTGGCTCTGAATTTTCAGCTCATCACAAACAGTCACAGCAGTGCTTGGTGAAGCCTTaGTATGACATATTCCTGGCT +
Preference number: 2 (lower is better)
Translates to: FHGHSGSEFSAHHKQSQQCLVKP*YDIFLA
Trigger: AGCCAGGAATATGTCATACCAAGGCTTCACCAAGCA...CTGCTGTGACTGTTTGTGATGAGCTGAAAATTCAGAGCCAGAATGACCGTGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR-3UTR CCA 90 bp AACTCTGGCAAACTGCCTAGTTCACTAGCAATGACTTTGTTATCAGGCAACTTTTCTTTGCCACATAGATaGTGCAGTGTGAGGGCCTCT +
Preference number: 2 (lower is better)
Translates to: NSGKLPSSLAMTLLSGNFSLPHR*CSVRAS
Trigger: AGAGGCCCTCACACTGCACCATCTATGTGGCAAAGA...AAAGTTGCCTGATAACAAAGTCATTGCTAGTGAACTAGGCAGTTTGCCAGAGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000235845.2
ENSMUST00000237587.2
3UTR-3UTR CCA 90 bp TCGGTCCGTTTTCATCAAGCGTCTGATTATGGACTCACAGCTATCTCCTTGCCTCCAGCTCGAGAGAATTaGTTAGGTAGACTATATTCT +
Preference number: 2 (lower is better)
Translates to: SVRFHQASDYGLTAISLPPAREN*LGRLYS
Trigger: AGAATATAGTCTACCTAACCAATTCTCTCGAGCTGG...AGGCAAGGAGATAGCTGTGAGTCCATAATCAGACGCTTGATGAAAACGGACCGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237587.2
3UTR-3UTR GCA 90 bp TTTCACGGTCATTCTGGCTCTGAATTTTCAGCTCATCACAAACAGTCACAGCAGACCCAACAATTTGTCTaGCCAAACATAGTCTCAGGT +
Preference number: 2 (lower is better)
Translates to: FHGHSGSEFSAHHKQSQQTQQFV*PNIVSG
Trigger: ACCTGAGACTATGTTTGGGCAGACAAATTGTTGGGT...CTGCTGTGACTGTTTGTGATGAGCTGAAAATTCAGAGCCAGAATGACCGTGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR-3UTR CCA 90 bp TGTCTCAAACCCAATGTATTTCATATCAGGCCGAACCCAACAATTTGTCTGCCCTTCATAATGTCCCACTaGTACTTAGAAGATCCTGCT +
Preference number: 2 (lower is better)
Translates to: CLKPNVFHIRPNPTICLPFIMSH*YLEDPA
Trigger: AGCAGGATCTTCTAAGTACCAGTGGGACATTATGAA...GGGCAGACAAATTGTTGGGTTCGGCCTGATATGAAATACATTGGGTTTGAGACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR-3UTR GCA 90 bp TTTCACGGTCATTCTGGCTCTGAATTTTCAGCTCATCACAAACAGTCACAGCAGTTTGTTCGTAAGGCTTaGTTTTTCTTCAAGTCTCTG +
Preference number: 2 (lower is better)
Translates to: FHGHSGSEFSAHHKQSQQFVRKA*FFFKSL
Trigger: CAGAGACTTGAAGAAAAAGCAAGCCTTACGAACAAA...CTGCTGTGACTGTTTGTGATGAGCTGAAAATTCAGAGCCAGAATGACCGTGAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR-3UTR TCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTCATGTGCTACTTCCATaGGATACTGTGAGGAACGGA +
Preference number: 2 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSHVLLP*DTVRNG
Trigger: TCCGTTCCTCACAGTATCTCATGGAAGTAGCACATG...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237587.2
3UTR-3UTR GCA 90 bp TATTTCATATCAGGCCGAACCCAACAATTTGTCTGCCCAAACATAGTCTCAGGTCTTAAAGTTAAAAACTaGCACCTGACAAAGGAATCG +
Preference number: 2 (lower is better)
Translates to: YFISGRTQQFVCPNIVSGLKVKN*HLTKES
Trigger: CGATTCCTTTGTCAGGTGGCAGTTTTTAACTTTAAG...ACCTGAGACTATGTTTGGGCAGACAAATTGTTGGGTTCGGCCTGATATGAAATA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR TCA 72 bp TGGTGTCGCCGATGTCCGTGCGCAGCCCGTTCTCGGTaGGGTGGACTTTCTTGCTCACCAGGTCCACGTGGA +
Preference number: 3 (lower is better)
Translates to: WCRRCPCAARSR*GGLSCSPGPRG
Trigger: TCCACGTGGACCTGGTGAGCAAGAAAGTCCACCTCACCGAGAACGGGCTGCGCACGGACATCGGCGACACCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237587.2
3UTR GCA 72 bp AAAACGGCGTTCTCGGAAATGAGTGTCTTCTCACTGTaGTCTCTCCCCAGGACCGGAACTCGCCGAGGCCCC +
Preference number: 3 (lower is better)
Translates to: KTAFSEMSVFSL*SLPRTGTRRGP
Trigger: GGGGCCTCGGCGAGTTCCGGTCCTGGGGAGAGAGCACAGTGAGAAGACACTCATTTCCGAGAACGCCGTTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237587.2
3UTR GCA 72 bp GCTGCCAGACGGGGTAGTTCTTTGCCACATAGATGGTaGAGTGTGAGGGCCTCTGAGCTGGCTGCTTGTCAG +
Preference number: 3 (lower is better)
Translates to: AARRGSSLPHRW*SVRASELAACQ
Trigger: CTGACAAGCAGCCAGCTCAGAGGCCCTCACACTGCACCATCTATGTGGCAAAGAACTACCCCGTCTGGCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000235845.2
ENSMUST00000237587.2
3UTR TCA 72 bp TCACCAGGTCCACGTGGAAAACGGCGTTCTCGGAAATaGGTGTCTTCTCACTGTGCTCTCTCCCCAGGACCG +
Preference number: 3 (lower is better)
Translates to: SPGPRGKRRSRK*VSSHCALSPGP
Trigger: CGGTCCTGGGGAGAGAGCACAGTGAGAAGACACTCATTTCCGAGAACGCCGTTTTCCACGTGGACCTGGTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237587.2
3UTR CCA 72 bp TGTGCTGCCAGACGGGGTAGTTCTTTGCCACATAGATaGTGCAGTGTGAGGGCCTCTGAGCTGGCTGCTTGT +
Preference number: 3 (lower is better)
Translates to: CAARRGSSLPHR*CSVRASELAAC
Trigger: ACAAGCAGCCAGCTCAGAGGCCCTCACACTGCACCATCTATGTGGCAAAGAACTACCCCGTCTGGCAGCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000235845.2
ENSMUST00000237587.2
3UTR-3UTR CAA 90 bp ACGGCGTTCTCGGAAATGAGTGTCTTCTCACTGTGCTCTCTCCCCAGGACCGGAGCCTCAGAGGCAAACTaGACTTCTATGTGTTCCAGC +
Preference number: 3 (lower is better)
Translates to: TAFSEMSVFSLCSLPRTGASEAN*TSMCSS
Trigger: GCTGGAACACATAGAAGTCAAGTTTGCCTCTGAGGC...TCCGGTCCTGGGGAGAGAGCACAGTGAGAAGACACTCATTTCCGAGAACGCCGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237587.2
3UTR TCA 72 bp CTGGGTTCTATAACCCCGCACCACATATGCAAGGCATaGTGGCGCCACCTGTATTTCCAGCCCTCAGTAGAC +
Preference number: 3 (lower is better)
Translates to: LGSITPHHICKA*WRHLYFQPSVD
Trigger: GTCTACTGAGGGCTGGAAATACAGGTGGCGCCATCATGCCTTGCATATGTGGTGCGGGGTTATAGAACCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR TCA 72 bp CATCCACGGGACCTGCCACAGGCCATGAGGCATGCATaGTTGAATCAGGCTTTCCAAGCAGTGTCCAGATGT +
Preference number: 3 (lower is better)
Translates to: HPRDLPQAMRHA*LNQAFQAVSRC
Trigger: ACATCTGGACACTGCTTGGAAAGCCTGATTCAATCATGCATGCCTCATGGCCTGTGGCAGGTCCCGTGGATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237587.2
3UTR CCA 72 bp ACAACCGGCACCACTCCGTTGTGCTTGGTGAAGCCTTaGTATGACATATTCCTGGCTGCTCTCTGGGTACAG +
Preference number: 3 (lower is better)
Translates to: TTGTTPLCLVKP*YDIFLAALWVQ
Trigger: CTGTACCCAGAGAGCAGCCAGGAATATGTCATACCAAGGCTTCACCAAGCACAACGGAGTGGTGCCGGTTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR TCA 72 bp ACTCCTTCACAACCGGCACCACTCCGTTGTGCTTGGTaGAGCCTTGGTATGACATATTCCTGGCTGCTCTCT +
Preference number: 3 (lower is better)
Translates to: TPSQPAPLRCAW*SLGMTYSWLLS
Trigger: AGAGAGCAGCCAGGAATATGTCATACCAAGGCTTCACCAAGCACAACGGAGTGGTGCCGGTTGTGAAGGAGT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR-3UTR CAA 90 bp GTAAGGATTCACGTCCGTGGTGATGAAGGAGCGCCGCCAGTCTACCTTCAAACCTTAGAAGATCCTGCTTaGGCGGCAGCTTTGCTCTTT +
Preference number: 3 (lower is better)
Translates to: VRIHVRGDEGAPPVYLQTLEDPA*AAALLF
Trigger: AAAGAGCAAAGCTGCCGCCAAAGCAGGATCTTCTAA...GGTTTGAAGGTAGACTGGCGGCGCTCCTTCATCACCACGGACGTGAATCCTTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR-3UTR CAA 90 bp GAACGTAGACCACCTTATAGCACGTCAGGGGTGCAGAAAGTGAAGCCCCAAGGAAACACCCTCTCCAGTTaGTCTGTCATGATCCATGCA +
Preference number: 3 (lower is better)
Translates to: ERRPPYSTSGVQKVKPQGNTLSS*SVMIHA
Trigger: TGCATGGATCATGACAGACAAACTGGAGAGGGTGTT...TCCTTGGGGCTTCACTTTCTGCACCCCTGACGTGCTATAAGGTGGTCTACGTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR GCA 72 bp CCCATTAACTCCTTCACAACCGGCACCACTCCGTTGTaGTTGGTGAAGCCTTGGTATGACATATTCCTGGCT +
Preference number: 3 (lower is better)
Translates to: PINSFTTGTTPL*LVKPWYDIFLA
Trigger: AGCCAGGAATATGTCATACCAAGGCTTCACCAAGCACAACGGAGTGGTGCCGGTTGTGAAGGAGTTAATGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR-3UTR CAA 90 bp CCCTCGGTCCGTTTTCATCAAGCGTCTGATTATGGACTCACAGCTATCTCCTTGAGACGGGGTAGTTCTTaGCCACATAGATGGTGCAGT +
Preference number: 3 (lower is better)
Translates to: PSVRFHQASDYGLTAISLRRGSS*PHRWCS
Trigger: ACTGCACCATCTATGTGGCAAAGAACTACCCCGTCT...CAAGGAGATAGCTGTGAGTCCATAATCAGACGCTTGATGAAAACGGACCGAGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237587.2
3UTR GCA 72 bp ATACAGCTCTATTTCTCTTTTCAGCTTGTCAGCGCATaGCTTGGCCACTCAGTCCTGGGTTCTATAACCCCG +
Preference number: 3 (lower is better)
Translates to: IQLYFSFQLVSA*LGHSVLGSITP
Trigger: CGGGGTTATAGAACCCAGGACTGAGTGGCCAAGGCATGCGCTGACAAGCTGAAAAGAGAAATAGAGCTGTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR CCA 72 bp AACTGGCACACCAGGTTCTGTTCTGAAAACGTTAAGTaGCTTCCCAGGACAGCACTCCTCCCTGACTTTATC +
Preference number: 3 (lower is better)
Translates to: NWHTRFCSENVK*LPRTALLPDFI
Trigger: GATAAAGTCAGGGAGGAGTGCTGTCCTGGGAAGCCACTTAACGTTTTCAGAACAGAACCTGGTGTGCCAGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237587.2
3UTR-3UTR CAA 90 bp GAACGTAGACCACCTTATAGCACGTCAGGGGTGCAGAAAGTGAAGCCCCAAGGATCAGGCCGCTTAATTTaGATGGATATGGTTCAAGCA +
Preference number: 3 (lower is better)
Translates to: ERRPPYSTSGVQKVKPQGSGRLI*MDMVQA
Trigger: TGCTTGAACCATATCCATCAAAATTAAGCGGCCTGA...TCCTTGGGGCTTCACTTTCTGCACCCCTGACGTGCTATAAGGTGGTCTACGTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR CCA 72 bp TCATCAGAGAGCCCAAGGGATTTCATAATGTCCCACTaGTACTTAGAAGATCCTGCTTTGGCGGCAGCTTTG +
Preference number: 3 (lower is better)
Translates to: SSESPRDFIMSH*YLEDPALAAAL
Trigger: CAAAGCTGCCGCCAAAGCAGGATCTTCTAAGTACCAGTGGGACATTATGAAATCCCTTGGGCTCTCTGATGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR-3UTR CAA 90 bp AACGGCAGGACCATGTCATCCCTAATTCCAAACTTTGTTCGTAAGGCTTGCTTTACCACTCCGTTGTGCTaGGTGAAGCCTTGGTATGAC +
Preference number: 3 (lower is better)
Translates to: NGRTMSSLIPNFVRKACFTTPLC*VKPWYD
Trigger: GTCATACCAAGGCTTCACCAAGCACAACGGAGTGGT...AAAGCAAGCCTTACGAACAAAGTTTGGAATTAGGGATGACATGGTCCTGCCGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR-3UTR CAA 90 bp TTGTGCTTGGTGAAGCCTTGGTATGACATATTCCTGGCTGCTCTCTGGGTACAGTTGCTCTTTTTCCCTTaGGCTTTATCCCTCACTACT +
Preference number: 3 (lower is better)
Translates to: LCLVKPWYDIFLAALWVQLLFFP*ALSLTT
Trigger: AGTAGTGAGGGATAAAGCCAAAGGGAAAAAGAGCAA...CTGTACCCAGAGAGCAGCCAGGAATATGTCATACCAAGGCTTCACCAAGCACAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR GCA 72 bp GGCTGCTCTCTGGGTACAGATGAAGATGTCTCCATTTaGTGTCTCAAACCCAATGTATTTCATATCAGGCCG +
Preference number: 3 (lower is better)
Translates to: GCSLGTDEDVSI*CLKPNVFHIRP
Trigger: CGGCCTGATATGAAATACATTGGGTTTGAGACAGCAAATGGAGACATCTTCATCTGTACCCAGAGAGCAGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR CCA 72 bp CTTCAAACCTATAGTCTTCAGATCCTGAACGGCCAGTaGTGGGAAATAATCAAGCCAGTGCTCTGCTTCAGA +
Preference number: 3 (lower is better)
Translates to: LQTYSLQILNGQ*WEIIKPVLCFR
Trigger: TCTGAAGCAGAGCACTGGCTTGATTATTTCCCACCACTGGCCGTTCAGGATCTGAAGACTATAGGTTTGAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR CCA 72 bp GTGAAGCCTTGGTATGACATATTCCTGGCTGCTCTCTaGGTACAGATGAAGATGTCTCCATTTGCTGTCTCA +
Preference number: 3 (lower is better)
Translates to: VKPWYDIFLAAL*VQMKMSPFAVS
Trigger: TGAGACAGCAAATGGAGACATCTTCATCTGTACCCAGAGAGCAGCCAGGAATATGTCATACCAAGGCTTCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR-3UTR CAA 90 bp CAAGTTTTTCACGGTCATTCTGGCTCTGAATTTTCAGCTCATCACAAACAGTCAGCTTTGGCGGCAGCTTaGCTCTTTTTCCCTTTGGCT +
Preference number: 3 (lower is better)
Translates to: QVFHGHSGSEFSAHHKQSALAAA*LFFPLA
Trigger: AGCCAAAGGGAAAAAGAGCAAAGCTGCCGCCAAAGC...TGACTGTTTGTGATGAGCTGAAAATTCAGAGCCAGAATGACCGTGAAAAACTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR TCA 72 bp GGTATGACATATTCCTGGCTGCTCTCTGGGTACAGATaGAGATGTCTCCATTTGCTGTCTCAAACCCAATGT +
Preference number: 3 (lower is better)
Translates to: GMTYSWLLSGYR*RCLHLLSQTQC
Trigger: ACATTGGGTTTGAGACAGCAAATGGAGACATCTTCATCTGTACCCAGAGAGCAGCCAGGAATATGTCATACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR CCA 72 bp CAAACCTATAGTCTTCAGATCCTGAACGGCCAGTGGTaGGAAATAATCAAGCCAGTGCTCTGCTTCAGAAAA +
Preference number: 3 (lower is better)
Translates to: QTYSLQILNGQW*EIIKPVLCFRK
Trigger: TTTTCTGAAGCAGAGCACTGGCTTGATTATTTCCCACCACTGGCCGTTCAGGATCTGAAGACTATAGGTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR-3UTR CAA 90 bp TTCAGAAAACTTCACTATGTCGTCATCAGAGAGCCCAAGGGATTTCATAATGTCATTTCTCTTTTCAGCTaGTCAGCGCATGCCTTGGCC +
Preference number: 3 (lower is better)
Translates to: FRKLHYVVIREPKGFHNVISLFS*SAHALA
Trigger: GGCCAAGGCATGCGCTGACAAGCTGAAAAGAGAAAT...GACATTATGAAATCCCTTGGGCTCTCTGATGACGACATAGTGAAGTTTTCTGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR TCA 72 bp ACTTTGTTCGTAAGGCTTGCTTTTTCTTCAAGTCTCTaGGTGCTGCAAGATCATCCGGGGAATCAGAAGGAA +
Preference number: 3 (lower is better)
Translates to: TLFVRLAFSSSL*VLQDHPGNQKE
Trigger: TTCCTTCTGATTCCCCGGATGATCTTGCAGCACTCAGAGACTTGAAGAAAAAGCAAGCCTTACGAACAAAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR GCA 72 bp ATGTATTTCATATCAGGCCGAACCCAACAATTTGTCTaGCCAAACATAGTCTCAGGTCTGAGTGTAGCAGCT +
Preference number: 3 (lower is better)
Translates to: MYFISGRTQQFV*PNIVSGLSVAA
Trigger: AGCTGCTACACTCAGACCTGAGACTATGTTTGGGCAGACAAATTGTTGGGTTCGGCCTGATATGAAATACAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR-3UTR CAA 90 bp TATTTCTTCAACTCTGGCAAACTGCCTAGTTCACTAGCAATGACTTTGTTATCAAGACGGGGTAGTTCTTaGCCACATAGATGGTGCAGT +
Preference number: 3 (lower is better)
Translates to: YFFNSGKLPSSLAMTLLSRRGSS*PHRWCS
Trigger: ACTGCACCATCTATGTGGCAAAGAACTACCCCGTCT...TGATAACAAAGTCATTGCTAGTGAACTAGGCAGTTTGCCAGAGTTGAAGAAATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000235845.2
ENSMUST00000237587.2
3UTR TCA 72 bp TTAATTTTGATGGATATGGTTCAAGCACCTTCAGTTTaGCCAGAGTATATTCCTGAGGTCCAACACCCTCTC +
Preference number: 3 (lower is better)
Translates to: LILMDMVQAPSV*PEYIPEVQHPL
Trigger: GAGAGGGTGTTGGACCTCAGGAATATACTCTGGTCAAACTGAAGGTGCTTGAACCATATCCATCAAAATTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
CDS-3UTR GCA 90 bp TCTCTCCCCAGGACCGGAACTCGCCGAGGCCCCAACAGAGGATCATCAAACCGCTGTACAGACGGAGGATaGCTGCGTCTGCCATGGCTT +
Preference number: 4 (lower is better)
Translates to: SLPRTGTRRGPNRGSSNRCTDGG*LRLPWL
Trigger: AAGCCATGGCAGACGCAGGCATCCTCCGTCTGTACA...GCGGTTTGATGATCCTCTGTTGGGGCCTCGGCGAGTTCCGGTCCTGGGGAGAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237587.2
CDS-3UTR GCA 90 bp TCTCTCCCCAGGACCGGAACTCGCCGAGGCCCCAACAGAGGATCATCAAACCGCAACACAAGCTCTCTGTaGATGCCCTCCGTGGCCAGT +
Preference number: 4 (lower is better)
Translates to: SLPRTGTRRGPNRGSSNRNTSSL*MPSVAS
Trigger: ACTGGCCACGGAGGGCATGCACAGAGAGCTTGTGTT...GCGGTTTGATGATCCTCTGTTGGGGCCTCGGCGAGTTCCGGTCCTGGGGAGAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237587.2
CDS-3UTR GCA 90 bp GCCAGACGGGGTAGTTCTTTGCCACATAGATGGTGCAGTGTGAGGGCCTCTGAGCAGACGGAGGATGCCTaGGTCTGCCATGGCTTCCAC +
Preference number: 4 (lower is better)
Translates to: ARRGSSLPHRWCSVRASEQTEDA*VCHGFH
Trigger: GTGGAAGCCATGGCAGACGCAGGCATCCTCCGTCTG...CTCAGAGGCCCTCACACTGCACCATCTATGTGGCAAAGAACTACCCCGTCTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237587.2
CDS-3UTR TCA 90 bp TGCTCATCAAACTCCAGCTCTAAATCCAAGACTCTCGGCCCTTTCTTCTCCATGCGGCAGGTCCACTTCTaGGGCTGCTGCAGCTGGCGA +
Preference number: 4 (lower is better)
Translates to: CSSNSSSKSKTLGPFFSMRQVHF*GCCSWR
Trigger: TCGCCAGCTGCAGCAGCCTCAGAAGTGGACCTGCCG...CATGGAGAAGAAAGGGCCGAGAGTCTTGGATTTAGAGCTGGAGTTTGATGAGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237587.2
CDS-3UTR GCA 90 bp AGACGGGGTAGTTCTTTGCCACATAGATGGTGCAGTGTGAGGGCCTCTGAGCTGAACACAAGCTCTCTGTaGATGCCCTCCGTGGCCAGT +
Preference number: 4 (lower is better)
Translates to: RRGSSLPHRWCSVRASELNTSSL*MPSVAS
Trigger: ACTGGCCACGGAGGGCATGCACAGAGAGCTTGTGTT...CAGCTCAGAGGCCCTCACACTGCACCATCTATGTGGCAAAGAACTACCCCGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000235845.2
ENSMUST00000237587.2
CDS-3UTR CCA 90 bp CTCAGTCCTGGGTTCTATAACCCCGCACCACATATGCAAGGCATGATGGCGCCAGCTTCCCACTTCTGCTaGGCCTCTTTCTCGATCTCC +
Preference number: 4 (lower is better)
Translates to: LSPGFYNPAPHMQGMMAPASHFC*ASFSIS
Trigger: GGAGATCGAGAAAGAGGCCCAGCAGAAGTGGGAAGC...TGGCGCCATCATGCCTTGCATATGTGGTGCGGGGTTATAGAACCCAGGACTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
CDS-3UTR TCA 90 bp TTTTCAGCTTGTCAGCGCATGCCTTGGCCACTCAGTCCTGGGTTCTATAACCCCCCAGCCGGGAGGCACTaGCTTCAAACACTTTCTCAG +
Preference number: 4 (lower is better)
Translates to: FSACQRMPWPLSPGFYNPPAGRH*LQTLSQ
Trigger: CTGAGAAAGTGTTTGAAGTCAGTGCCTCCCGGCTGG...GGGGTTATAGAACCCAGGACTGAGTGGCCAAGGCATGCGCTGACAAGCTGAAAA
54% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR CAA 72 bp GGAGGGCAGCCATACAGCTCTATTTCTCTTTTCAGCTaGTCAGCGCATGCCTTGGCCACTCAGTCCTGGGTT +
Preference number: 4 (lower is better)
Translates to: GGQPYSSISLFS*SAHALATQSWV
Trigger: AACCCAGGACTGAGTGGCCAAGGCATGCGCTGACAAGCTGAAAAGAGAAATAGAGCTGTATGGCTGCCCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
CDS-3UTR GCA 90 bp AGACGGGGTAGTTCTTTGCCACATAGATGGTGCAGTGTGAGGGCCTCTGAGCTGTTGGAATCAGATCCTTaGCAGAGGCTCGAAGGTCCA +
Preference number: 4 (lower is better)
Translates to: RRGSSLPHRWCSVRASELLESDP*QRLEGP
Trigger: TGGACCTTCGAGCCTCTGGCAAGGATCTGATTCCAA...CAGCTCAGAGGCCCTCACACTGCACCATCTATGTGGCAAAGAACTACCCCGTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237587.2
CDS-3UTR TCA 90 bp CACGTGGAAAACGGCGTTCTCGGAAATGAGTGTCTTCTCACTGTGCTCTCTCCCTGGCGAGCATTTCTTTaGCCCACTCTACCCATGTGT +
Preference number: 4 (lower is better)
Translates to: HVENGVLGNECLLTVLSPWRAFL*PTLPMC
Trigger: ACACATGGGTAGAGTGGGTCAAAGAAATGCTCGCCA...GGGAGAGAGCACAGTGAGAAGACACTCATTTCCGAGAACGCCGTTTTCCACGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237587.2
CDS-3UTR GCA 90 bp CCACATAGATGGTGCAGTGTGAGGGCCTCTGAGCTGGCTGCTTGTCAGTCTTCTAGCAGTGTCCAGATGTaGTCACACAAATGTGGACAG +
Preference number: 4 (lower is better)
Translates to: PHRWCSVRASELAACQSSSSVQM*SHKCGQ
Trigger: CTGTCCACATTTGTGTGAGCACATCTGGACACTGCT...AGAAGACTGACAAGCAGCCAGCTCAGAGGCCCTCACACTGCACCATCTATGTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235845.2
CDS-3UTR TCA 90 bp GCCGAGGCCCCAACAGAGGATCATCAAACCGCATCAGCTTCACTTTGGAAAGATACATCTTCTCCGAGTTaGGCAGCAGGTGTCCATTTG +
Preference number: 4 (lower is better)
Translates to: AEAPTEDHQTASASLWKDTSSPS*AAGVHL
Trigger: CAAATGGACACCTGCTGCTCAACTCGGAGAAGATGT...ATCTTTCCAAAGTGAAGCTGATGCGGTTTGATGATCCTCTGTTGGGGCCTCGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237587.2
CDS-3UTR CCA 90 bp CCCTCGGTCCGTTTTCATCAAGCGTCTGATTATGGACTCACAGCTATCTCCTTGTCCTTTGTCATCTGCTaGGGTCTGATGCCCAGTGGA +
Preference number: 4 (lower is better)
Translates to: PSVRFHQASDYGLTAISLSFVIC*GLMPSG
Trigger: TCCACTGGGCATCAGACCCCAGCAGATGACAAAGGA...CAAGGAGATAGCTGTGAGTCCATAATCAGACGCTTGATGAAAACGGACCGAGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237587.2
CDS-3UTR CCA 90 bp ACAGCTATCTCCTTGCCTGATGTCGATTTTGGTGGAGAAGTGCCCACTCGATGGCTTGTCACTTTGCTCTaGCCACATGGCCACATGGTT +
Preference number: 4 (lower is better)
Translates to: TAISLPDVDFGGEVPTRWLVTLL*PHGHMV
Trigger: AACCATGTGGCCATGTGGCCAGAGCAAAGTGACAAG...CCATCGAGTGGGCACTTCTCCACCAAAATCGACATCAGGCAAGGAGATAGCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237587.2
CDS-3UTR GCA 90 bp TTGAGCCGTAATCTAAGGTCATGTGCTACTTCCATGAGATACTGTGAGGAACGGGGCCACTTGTCACTTTaGTCTGGCCACATGGCCACA +
Preference number: 4 (lower is better)
Translates to: LSRNLRSCATSMRYCEERGHLSL*SGHMAT
Trigger: TGTGGCCATGTGGCCAGAGCAAAGTGACAAGTGGCC...CCGTTCCTCACAGTATCTCATGGAAGTAGCACATGACCTTAGATTACGGCTCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237587.2
CDS-3UTR GCA 90 bp AAGACTCTCGGCCCTTTCTTCTCCATGTTTTCCTTAATCATAGCAACGAATGGCCAAGCTCTCTGTGCATaGCCTCCGTGGCCAGTTCAC +
Preference number: 4 (lower is better)
Translates to: KTLGPFFSMFSLIIATNGQALCA*PPWPVH
Trigger: GTGAACTGGCCACGGAGGGCATGCACAGAGAGCTTG...GCCATTCGTTGCTATGATTAAGGAAAACATGGAGAAGAAAGGGCCGAGAGTCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237587.2
CDS-3UTR CCA 90 bp CCACATAGATGGTGCAGTGTGAGGGCCTCTGAGCTGGCTGCTTGTCAGTCTTCTATCCAGCTTCTCCTTTaGGATCTGAGTCTTAGGAAA +
Preference number: 4 (lower is better)
Translates to: PHRWCSVRASELAACQSSIQLLL*DLSLRK
Trigger: TTTCCTAAGACTCAGATCCCAAAGGAGAAGCTGGAT...AGAAGACTGACAAGCAGCCAGCTCAGAGGCCCTCACACTGCACCATCTATGTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237587.2
CDS-3UTR CCA 90 bp CAGCTATCTCCTTGCCTGATGTCGATTTTGGTGGAGAAGTGCCCACTCGATGGCTTTGCTCTGGCCACATaGCCACATGGTTGTAAATGT +
Preference number: 4 (lower is better)
Translates to: QLSPCLMSILVEKCPLDGFALAT*PHGCKC
Trigger: ACATTTACAACCATGTGGCCATGTGGCCAGAGCAAA...GCCATCGAGTGGGCACTTCTCCACCAAAATCGACATCAGGCAAGGAGATAGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237587.2
3UTR CAA 72 bp ATTAACTCCTTCACAACCGGCACCACTCCGTTGTGCTaGGTGAAGCCTTGGTATGACATATTCCTGGCTGCT +
Preference number: 4 (lower is better)
Translates to: INSFTTGTTPLC*VKPWYDIFLAA
Trigger: AGCAGCCAGGAATATGTCATACCAAGGCTTCACCAAGCACAACGGAGTGGTGCCGGTTGTGAAGGAGTTAAT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR CAA 72 bp TCTCCCATTAACTCCTTCACAACCGGCACCACTCCGTaGTGCTTGGTGAAGCCTTGGTATGACATATTCCTG +
Preference number: 4 (lower is better)
Translates to: SPINSFTTGTTP*CLVKPWYDIFL
Trigger: CAGGAATATGTCATACCAAGGCTTCACCAAGCACAACGGAGTGGTGCCGGTTGTGAAGGAGTTAATGGGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
CDS-3UTR GCA 90 bp GTTTTTCACGGTCATTCTGGCTCTGAATTTTCAGCTCATCACAAACAGTCACAGTTGCCCTTGCTGCTCTaGTTCTGCTTCTCCAGCCGG +
Preference number: 4 (lower is better)
Translates to: VFHGHSGSEFSAHHKQSQLPLLL*FCFSSR
Trigger: CCGGCTGGAGAAGCAGAAGCAGAGCAGCAAGGGCAA...CTGTGACTGTTTGTGATGAGCTGAAAATTCAGAGCCAGAATGACCGTGAAAAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
CDS-3UTR CCA 90 bp GGTTGTCAGGGTAATGTGCTGCCAGACGGGGTAGTTCTTTGCCACATAGATGGTGTGCTCACACAAATGTaGACAGAATGGAGTCAGAAG +
Preference number: 4 (lower is better)
Translates to: GCQGNVLPDGVVLCHIDGVLTQM*TEWSQK
Trigger: CTTCTGACTCCATTCTGTCCACATTTGTGTGAGCAC...ACCATCTATGTGGCAAAGAACTACCCCGTCTGGCAGCACATTACCCTGACAACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235845.2
3UTR CAA 72 bp CTAGCAATGACTTTGTTATCAGGCAACTTTCCATTGTaGGCCTCAAAGTGGCTCCGCAGGGTTGTCAGGGTA +
Preference number: 4 (lower is better)
Translates to: LAMTLLSGNFPL*ASKWLRRVVRV
Trigger: TACCCTGACAACCCTGCGGAGCCACTTTGAGGCCAACAATGGAAAGTTGCCTGATAACAAAGTCATTGCTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000235845.2
ENSMUST00000237587.2
3UTR CAA 72 bp TCACTAGCAATGACTTTGTTATCAGGCAACTTTCCATaGTTGGCCTCAAAGTGGCTCCGCAGGGTTGTCAGG +
Preference number: 4 (lower is better)
Translates to: SLAMTLLSGNFP*LASKWLRRVVR
Trigger: CCTGACAACCCTGCGGAGCCACTTTGAGGCCAACAATGGAAAGTTGCCTGATAACAAAGTCATTGCTAGTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000235845.2
ENSMUST00000237587.2
3UTR CAA 72 bp CATCAAGCGTCTGATTATGGACTCACAGCTATCTCCTaGCCTGATGTCGATTTTGGTGGAGAAGTGCCCACT +
Preference number: 4 (lower is better)
Translates to: HQASDYGLTAIS*PDVDFGGEVPT
Trigger: AGTGGGCACTTCTCCACCAAAATCGACATCAGGCAAGGAGATAGCTGTGAGTCCATAATCAGACGCTTGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237587.2
3UTR CAA 72 bp AGCAGAAGTATCCGAAAACCATCCCGACTCTCCAATTaGCATGAGCTCAGTGAACCAGGTAGACCATGGTGT +
Preference number: 4 (lower is better)
Translates to: SRSIRKPSRLSN*HELSEPGRPWC
Trigger: ACACCATGGTCTACCTGGTTCACTGAGCTCATGCAAATTGGAGAGTCGGGATGGTTTTCGGATACTTCTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237587.2
CDS-3UTR TCA 90 bp CCTGCCACAGGCCATGAGGCATGCATGATTGAATCAGGCTTTCCAAGCAGTGTCGAAATGGAGCATCCTTaGAGAACACATAATCCCAAA +
Preference number: 4 (lower is better)
Translates to: PATGHEACMIESGFPSSVEMEHP*RTHNPK
Trigger: TTTGGGATTATGTGTTCTTCAAGGATGCTCCATTTC...GACACTGCTTGGAAAGCCTGATTCAATCATGCATGCCTCATGGCCTGTGGCAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237587.2
CDS-3UTR TCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTCGGCAGGTCCACTTCTaGGGCTGCTGCAGCTGGCGA +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSRQVHF*GCCSWR
Trigger: TCGCCAGCTGCAGCAGCCTCAGAAGTGGACCTGCCG...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000237587.2
CDS-3UTR GCA 90 bp AGTTCACTAGCAATGACTTTGTTATCAGGCAACTTTCCATTGTTGGCCTCAAAGCAAGCTCTCTGTGCATaGCCTCCGTGGCCAGTTCAC +
Preference number: 4 (lower is better)
Translates to: SSLAMTLLSGNFPLLASKQALCA*PPWPVH
Trigger: GTGAACTGGCCACGGAGGGCATGCACAGAGAGCTTG...CTTTGAGGCCAACAATGGAAAGTTGCCTGATAACAAAGTCATTGCTAGTGAACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000235845.2
ENSMUST00000237587.2
CDS-3UTR CCA 90 bp CACGTGGAAAACGGCGTTCTCGGAAATGAGTGTCTTCTCACTGTGCTCTCTCCCAATTTGTCAACAGCTTaGCTCAAAGTGAGGAAGTTG +
Preference number: 4 (lower is better)
Translates to: HVENGVLGNECLLTVLSPNLSTA*LKVRKL
Trigger: CAACTTCCTCACTTTGAGCCAAGCTGTTGACAAATT...GGGAGAGAGCACAGTGAGAAGACACTCATTTCCGAGAACGCCGTTTTCCACGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237587.2
CDS-3UTR GCA 90 bp GGTACAGATGAAGATGTCTCCATTTGCTGTCTCAAACCCAATGTATTTCATATCTTGCTGCTCTGCTTCTaGTTCTCCAGCCGGGAGGCA +
Preference number: 4 (lower is better)
Translates to: GTDEDVSICCLKPNVFHILLLCF*FSSREA
Trigger: TGCCTCCCGGCTGGAGAAGCAGAAGCAGAGCAGCAA...GATATGAAATACATTGGGTTTGAGACAGCAAATGGAGACATCTTCATCTGTACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR CAA 72 bp CCCAACAGAGGATCATCAAACCGCATCAGCTTCACTTaGGAAAGATCTTTGATCCCTCGGTCCGTTTTCATC +
Preference number: 4 (lower is better)
Translates to: PNRGSSNRISFT*ERSLIPRSVFI
Trigger: GATGAAAACGGACCGAGGGATCAAAGATCTTTCCAAAGTGAAGCTGATGCGGTTTGATGATCCTCTGTTGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237587.2
CDS-3UTR TCA 90 bp ATTCCTGGCTGCTCTCTGGGTACAGATGAAGATGTCTCCATTTGCTGTCTCAAAATGGATATGGGAAGGTaGCAAAGTATTTGCCCTTGC +
Preference number: 4 (lower is better)
Translates to: IPGCSLGTDEDVSICCLKMDMGR*QSICPC
Trigger: GCAAGGGCAAATACTTTGTCACCTTCCCATATCCAT...TTTGAGACAGCAAATGGAGACATCTTCATCTGTACCCAGAGAGCAGCCAGGAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
CDS-3UTR TCA 90 bp CCTAGTTCACTAGCAATGACTTTGTTATCAGGCAACTTTCCATTGTTGGCCTCAAACTCCTGCTTCAACTaGTCCAGCTTCTCCTTTGGG +
Preference number: 4 (lower is better)
Translates to: PSSLAMTLLSGNFPLLASNSCFN*SSFSFG
Trigger: CCCAAAGGAGAAGCTGGATCAGTTGAAGCAGGAGTT...TGAGGCCAACAATGGAAAGTTGCCTGATAACAAAGTCATTGCTAGTGAACTAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237587.2
CDS-3UTR TCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTCAGTGTGAGGGCCTCTaGGCTGGCTGCTTGTCAGTC +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSQCEGL*AGCLSV
Trigger: GACTGACAAGCAGCCAGCTCAGAGGCCCTCACACTG...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR GCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTCAGACGGAGGATGCCTaGGTCTGCCATGGCTTCCAC +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSQTEDA*VCHGFH
Trigger: GTGGAAGCCATGGCAGACGCAGGCATCCTCCGTCTG...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000237587.2
CDS-3UTR CCA 90 bp TGCTCATCAAACTCCAGCTCTAAATCCAAGACTCTCGGCCCTTTCTTCTCCATGCTGAGTCTTAGGAAATaGAGCATCCTTGAAGAACAC +
Preference number: 4 (lower is better)
Translates to: CSSNSSSKSKTLGPFFSMLSLRK*SILEEH
Trigger: GTGTTCTTCAAGGATGCTCCATTTCCTAAGACTCAG...CATGGAGAAGAAAGGGCCGAGAGTCTTGGATTTAGAGCTGGAGTTTGATGAGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237587.2
3UTR CAA 72 bp GATCCTGCTTTGGCGGCAGCTTTGCTCTTTTTCCCTTaGGCTTTATCCCTCACTACTATATCTCCAGGTTTA +
Preference number: 4 (lower is better)
Translates to: DPALAAALLFFP*ALSLTTISPGL
Trigger: TAAACCTGGAGATATAGTAGTGAGGGATAAAGCCAAAGGGAAAAAGAGCAAAGCTGCCGCCAAAGCAGGATC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
CDS-3UTR TCA 90 bp CTCGGCCCTTTCTTCTCCATGTTTTCCTTAATCATAGCAACGAATGGCATCACTTTCTCCTTTGGGATCTaGGTCTTAGGAAATGGAGCA +
Preference number: 4 (lower is better)
Translates to: LGPFFSMFSLIIATNGITFSFGI*VLGNGA
Trigger: TGCTCCATTTCCTAAGACTCAGATCCCAAAGGAGAA...AGTGATGCCATTCGTTGCTATGATTAAGGAAAACATGGAGAAGAAAGGGCCGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237587.2
CDS-3UTR GCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTTTGCTGCTCTGCTTCTaGTTCTCCAGCCGGGAGGCA +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSLLLCF*FSSREA
Trigger: TGCCTCCCGGCTGGAGAAGCAGAAGCAGAGCAGCAA...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR GCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTTTGCCCTTGCTGCTCTaGTTCTGCTTCTCCAGCCGG +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSLPLLL*FCFSSR
Trigger: CCGGCTGGAGAAGCAGAAGCAGAGCAGCAAGGGCAA...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR GCA 90 bp TTTCACGGTCATTCTGGCTCTGAATTTTCAGCTCATCACAAACAGTCACAGCAGCAAAGTATTTGCCCTTaGTGCTCTGCTTCTGCTTCT +
Preference number: 4 (lower is better)
Translates to: FHGHSGSEFSAHHKQSQQQSICP*CSASAS
Trigger: AGAAGCAGAAGCAGAGCAGCAAGGGCAAATACTTTG...CTGCTGTGACTGTTTGTGATGAGCTGAAAATTCAGAGCCAGAATGACCGTGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
CDS-3UTR GCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTCCCCTGCAGCAGGTGTaGCACTGTGTAGAACGCCAT +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSPLQQV*HCVERH
Trigger: ATGGCGTTCTACACAGTGGCACACCTGCTGCAGGGG...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR GCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTCAAGCTCTCTGTGCATaGCCTCCGTGGCCAGTTCAC +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSQALCA*PPWPVH
Trigger: GTGAACTGGCCACGGAGGGCATGCACAGAGAGCTTG...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000237587.2
CDS-3UTR CCA 90 bp ATAATGTCCCACTGGTACTTAGAAGATCCTGCTTTGGCGGCAGCTTTGCTCTTTGCGTCCATTCATGTATaGATATGGGAAGGTGACAAA +
Preference number: 4 (lower is better)
Translates to: IMSHWYLEDPALAAALLFASIHV*IWEGDK
Trigger: TTTGTCACCTTCCCATATCCATACATGAATGGACGC...AAAGAGCAAAGCTGCCGCCAAAGCAGGATCTTCTAAGTACCAGTGGGACATTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
3UTR CAA 72 bp TCATCAAACCGCATCAGCTTCACTTTGGAAAGATCTTaGATCCCTCGGTCCGTTTTCATCAAGCGTCTGATT +
Preference number: 4 (lower is better)
Translates to: SSNRISFTLERS*IPRSVFIKRLI
Trigger: AATCAGACGCTTGATGAAAACGGACCGAGGGATCAAAGATCTTTCCAAAGTGAAGCTGATGCGGTTTGATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237587.2
CDS-3UTR TCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTCCAGCCGGGAGGCACTaGCTTCAAACACTTTCTCAG +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSPAGRH*LQTLSQ
Trigger: CTGAGAAAGTGTTTGAAGTCAGTGCCTCCCGGCTGG...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR GCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTGGCCACTTGTCACTTTaGTCTGGCCACATGGCCACA +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSGHLSL*SGHMAT
Trigger: TGTGGCCATGTGGCCAGAGCAAAGTGACAAGTGGCC...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000237587.2
CDS-3UTR GCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTTGTACAGACGGAGGATaGCTGCGTCTGCCATGGCTT +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSCTDGG*LRLPWL
Trigger: AAGCCATGGCAGACGCAGGCATCCTCCGTCTGTACA...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000237587.2
CDS-3UTR GCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTAACACAAGCTCTCTGTaGATGCCCTCCGTGGCCAGT +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSNTSSL*MPSVAS
Trigger: ACTGGCCACGGAGGGCATGCACAGAGAGCTTGTGTT...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000237587.2
CDS-3UTR CCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTGCTTCCCACTTCTGCTaGGCCTCTTTCTCGATCTCC +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSASHFC*ASFSIS
Trigger: GGAGATCGAGAAAGAGGCCCAGCAGAAGTGGGAAGC...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
3UTR CAA 72 bp AACTCTGGCAAACTGCCTAGTTCACTAGCAATGACTTaGTTATCAGGCAACTTTCCATTGTTGGCCTCAAAG +
Preference number: 4 (lower is better)
Translates to: NSGKLPSSLAMT*LSGNFPLLASK
Trigger: CTTTGAGGCCAACAATGGAAAGTTGCCTGATAACAAAGTCATTGCTAGTGAACTAGGCAGTTTGCCAGAGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000235845.2
ENSMUST00000237587.2
CDS-3UTR GCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTGGCACCACTCCGTTGTaGTTGGTGAAGCCTTGGTAT +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSGTTPL*LVKPWY
Trigger: ATACCAAGGCTTCACCAAGCACAACGGAGTGGTGCC...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR CCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTTCCTTTGTCATCTGCTaGGGTCTGATGCCCAGTGGA +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSSFVIC*GLMPSG
Trigger: TCCACTGGGCATCAGACCCCAGCAGATGACAAAGGA...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000237587.2
CDS-3UTR TCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTCCAGTTTGTCTGTCATaGTCCATGCAAGGCTGTCCA +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSPVCLS*SMQGCP
Trigger: TGGACAGCCTTGCATGGATCATGACAGACAAACTGG...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR TCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTACCAGAGTATATTCCTaGGGTCCAACACCCTCTCCA +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSTRVYS*GPTPSP
Trigger: TGGAGAGGGTGTTGGACCTCAGGAATATACTCTGGT...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR TCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTGGTGAAGCCTTGGTATaGCATATTCCTGGCTGCTCT +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSGEALV*HIPGCS
Trigger: AGAGCAGCCAGGAATATGTCATACCAAGGCTTCACC...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR TCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTAACTCCTGCTTCAACTaGTCCAGCTTCTCCTTTGGG +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSNSCFN*SSFSFG
Trigger: CCCAAAGGAGAAGCTGGATCAGTTGAAGCAGGAGTT...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000237587.2
CDS-3UTR TCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTACATCTTCTCCGAGTTaGGCAGCAGGTGTCCATTTG +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSTSSPS*AAGVHL
Trigger: CAAATGGACACCTGCTGCTCAACTCGGAGAAGATGT...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000237587.2
CDS-3UTR TCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTTGGCGAGCATTTCTTTaGCCCACTCTACCCATGTGT +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSWRAFL*PTLPMC
Trigger: ACACATGGGTAGAGTGGGTCAAAGAAATGCTCGCCA...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000237587.2
CDS-3UTR GCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTCTTCAAGTCTCTGAGTaGTGCAAGATCATCCGGGGA +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSLQVSE*CKIIRG
Trigger: TCCCCGGATGATCTTGCAGCACTCAGAGACTTGAAG...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR GCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTTTGGAATCAGATCCTTaGCAGAGGCTCGAAGGTCCA +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSLESDP*QRLEGP
Trigger: TGGACCTTCGAGCCTCTGGCAAGGATCTGATTCCAA...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000237587.2
CDS-3UTR GCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTGACGGGGTAGTTCTTTaGCACATAGATGGTGCAGTG +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSDGVVL*HIDGAV
Trigger: CACTGCACCATCTATGTGGCAAAGAACTACCCCGTC...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR CCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTCTGAACGGCCAGTGGTaGGAAATAATCAAGCCAGTG +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSLNGQW*EIIKPV
Trigger: CACTGGCTTGATTATTTCCCACCACTGGCCGTTCAG...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR CCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTCTTGTCACTTTGCTCTaGCCACATGGCCACATGGTT +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSLVTLL*PHGHMV
Trigger: AACCATGTGGCCATGTGGCCAGAGCAAAGTGACAAG...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000237587.2
CDS-3UTR CCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTTCTTTGCCACATAGATaGTGCAGTGTGAGGGCCTCT +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSSLPHR*CSVRAS
Trigger: AGAGGCCCTCACACTGCACCATCTATGTGGCAAAGA...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR CCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTGCAACTTTCCATTGTTaGCCTCAAAGTGGCTCCGCA +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSATFHC*PQSGSA
Trigger: TGCGGAGCCACTTTGAGGCCAACAATGGAAAGTTGC...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR TCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTCTCCGTTGTGCTTGGTaGAGCCTTGGTATGACATAT +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSLRCAW*SLGMTY
Trigger: ATATGTCATACCAAGGCTTCACCAAGCACAACGGAG...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR TCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTCCTCAGAGGCAAACTTaGCTTCTATGTGTTCCAGCT +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSPQRQT*LLCVPA
Trigger: AGCTGGAACACATAGAAGTCAAGTTTGCCTCTGAGG...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR TCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTAGCTATCTCCTTGCCTaGTGTCGATTTTGGTGGAGA +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSSYLLA*CRFWWR
Trigger: TCTCCACCAAAATCGACATCAGGCAAGGAGATAGCT...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR GCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTAGTATTTGCCCTTGCTaGTCTGCTTCTGCTTCTCCA +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSSICPC*SASASP
Trigger: TGGAGAAGCAGAAGCAGAGCAGCAAGGGCAAATACT...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR GCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTCTTTGGCGGCAGCTTTaGTCTTTTTCCCTTTGGCTT +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSLWRQL*SFSLWL
Trigger: AAGCCAAAGGGAAAAAGAGCAAAGCTGCCGCCAAAG...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR GCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTAGCAGTGTCCAGATGTaGTCACACAAATGTGGACAG +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSSSVQM*SHKCGQ
Trigger: CTGTCCACATTTGTGTGAGCACATCTGGACACTGCT...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR GCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTTCCATAAGCACTGCCTaGTCATCAAACTCCAGCTCT +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSSISTA*SSNSSS
Trigger: AGAGCTGGAGTTTGATGAGCAGGCAGTGCTTATGGA...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR CCA 90 bp TTTCACGGTCATTCTGGCTCTGAATTTTCAGCTCATCACAAACAGTCACAGCAGTTTCCTTTTAATCTCTaGTATCCTACTGCAAACTCA +
Preference number: 4 (lower is better)
Translates to: FHGHSGSEFSAHHKQSQQFPFNL*YPTANS
Trigger: TGAGTTTGCAGTAGGATACCAGAGATTAAAAGGAAA...CTGCTGTGACTGTTTGTGATGAGCTGAAAATTCAGAGCCAGAATGACCGTGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
CDS-3UTR CCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTATCCTGAACGGCCAGTaGTGGGAAATAATCAAGCCA +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSILNGQ*WEIIKP
Trigger: TGGCTTGATTATTTCCCACCACTGGCCGTTCAGGAT...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR CCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTTTCCTGGCTGCTCTCTaGGTACAGATGAAGATGTCT +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSFLAAL*VQMKMS
Trigger: AGACATCTTCATCTGTACCCAGAGAGCAGCCAGGAA...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR CCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTGGTATGACATATTCCTaGCTGCTCTCTGGGTACAGA +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSGMTYS*LLSGYR
Trigger: TCTGTACCCAGAGAGCAGCCAGGAATATGTCATACC...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR CCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTAAGATTTCCAATCCCTaGGATTTCCAGGACTGGCAC +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSKISNP*DFQDWH
Trigger: GTGCCAGTCCTGGAAATCCCAGGGATTGGAAATCTT...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR CCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTTCTGAAAACGTTAAGTaGCTTCCCAGGACAGCACTC +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSSENVK*LPRTAL
Trigger: GAGTGCTGTCCTGGGAAGCCACTTAACGTTTTCAGA...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR TCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTATGGATATGGGAAGGTaGCAAAGTATTTGCCCTTGC +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSMDMGR*QSICPC
Trigger: GCAAGGGCAAATACTTTGTCACCTTCCCATATCCAT...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR TCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTAACGTGTGTCCCAAATaGAGGCGTCCATTCATGTAT +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSNVCPK*RRPFMY
Trigger: ATACATGAATGGACGCCTTCATTTGGGACACACGTT...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR TCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTTTCTCCTTTGGGATCTaGGTCTTAGGAAATGGAGCA +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSFSFGI*VLGNGA
Trigger: TGCTCCATTTCCTAAGACTCAGATCCCAAAGGAGAA...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000237587.2
CDS-3UTR GCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTCAAAGTATTTGCCCTTaGTGCTCTGCTTCTGCTTCT +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSQSICP*CSASAS
Trigger: AGAAGCAGAAGCAGAGCAGCAAGGGCAAATACTTTG...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR GCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTACAGGCCATGAGGCATaGATGATTGAATCAGGCTTT +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSTGHEA*MIESGF
Trigger: AAAGCCTGATTCAATCATGCATGCCTCATGGCCTGT...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR GCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTATTCTCCATAAGCACTaGCTGCTCATCAAACTCCAG +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSILHKH*LLIKLQ
Trigger: CTGGAGTTTGATGAGCAGGCAGTGCTTATGGAGAAT...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR CCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTTGCTTGGTGAAGCCTTaGTATGACATATTCCTGGCT +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSCLVKP*YDIFLA
Trigger: AGCCAGGAATATGTCATACCAAGGCTTCACCAAGCA...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR CCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTTTTGCTCTGGCCACATaGCCACATGGTTGTAAATGT +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSFALAT*PHGCKC
Trigger: ACATTTACAACCATGTGGCCATGTGGCCAGAGCAAA...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000237587.2
CDS-3UTR CCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTGTGCTCACACAAATGTaGACAGAATGGAGTCAGAAG +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSVLTQM*TEWSQK
Trigger: CTTCTGACTCCATTCTGTCCACATTTGTGTGAGCAC...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR TCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTATGTTCTTCAGGCACTaGAATGTCTGTTTCTTCCAG +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSMFFRH*NVCFFQ
Trigger: CTGGAAGAAACAGACATTTCAGTGCCTGAAGAACAT...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR GCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTACCCAACAATTTGTCTaGCCAAACATAGTCTCAGGT +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSTQQFV*PNIVSG
Trigger: ACCTGAGACTATGTTTGGGCAGACAAATTGTTGGGT...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR CCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTGCGTCCATTCATGTATaGATATGGGAAGGTGACAAA +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSASIHV*IWEGDK
Trigger: TTTGTCACCTTCCCATATCCATACATGAATGGACGC...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR CCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTCTGCAAACTCACACTTaGATAAGGAAAACGTGTGTC +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSLQTHT*IRKTCV
Trigger: GACACACGTTTTCCTTATCCAAGTGTGAGTTTGCAG...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR CCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTAGGCTGTCCATCTTTTaGGGAATAAATAGTGTACCG +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSRLSIF*GINSVP
Trigger: CGGTACACTATTTATTCCCCAAAAGATGGACAGCCT...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR CCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTCTGAGTCTTAGGAAATaGAGCATCCTTGAAGAACAC +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSLSLRK*SILEEH
Trigger: GTGTTCTTCAAGGATGCTCCATTTCCTAAGACTCAG...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000237587.2
CDS-3UTR CCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTATCCAGCTTCTCCTTTaGGATCTGAGTCTTAGGAAA +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSIQLLL*DLSLRK
Trigger: TTTCCTAAGACTCAGATCCCAAAGGAGAAGCTGGAT...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000237587.2
CDS-3UTR TCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTTTAAAAACTGCCACCTaGCAAAGGAATCGTAGTAAG +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSLKTAT*QRNRSK
Trigger: CTTACTACGATTCCTTTGTCAGGTGGCAGTTTTTAA...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR TCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTGAAATGGAGCATCCTTaGAGAACACATAATCCCAAA +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSEMEHP*RTHNPK
Trigger: TTTGGGATTATGTGTTCTTCAAGGATGCTCCATTTC...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000237587.2
CDS-3UTR GCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTGAAGATGTCTCCATTTaGTGTCTCAAACCCAATGTA +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSEDVSI*CLKPNV
Trigger: TACATTGGGTTTGAGACAGCAAATGGAGACATCTTC...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR CCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTTGCTCTTTTTCCCTTTaGCTTTATCCCTCACTACTA +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSCSFSL*LYPSLL
Trigger: TAGTAGTGAGGGATAAAGCCAAAGGGAAAAAGAGCA...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR CCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTTTCATAATGTCCCACTaGTACTTAGAAGATCCTGCT +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSFIMSH*YLEDPA
Trigger: AGCAGGATCTTCTAAGTACCAGTGGGACATTATGAA...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR CCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTAATTTGTCAACAGCTTaGCTCAAAGTGAGGAAGTTG +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSNLSTA*LKVRKL
Trigger: CAACTTCCTCACTTTGAGCCAAGCTGTTGACAAATT...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000237587.2
CDS-3UTR CCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTCTTCTTCCCTTTAGCTaGCATCATGTAATTCTTGAG +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSLLPFS*HHVILE
Trigger: CTCAAGAATTACATGATGCCAGCTAAAGGGAAGAAG...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR CCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTCCAGCTCGAGAGAATTaGTTAGGTAGACTATATTCT +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSPAREN*LGRLYS
Trigger: AGAATATAGTCTACCTAACCAATTCTCTCGAGCTGG...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR GCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTCTTAAAGTTAAAAACTaGCACCTGACAAAGGAATCG +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSLKVKN*HLTKES
Trigger: CGATTCCTTTGTCAGGTGGCAGTTTTTAACTTTAAG...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR GCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTTTTGTTCGTAAGGCTTaGTTTTTCTTCAAGTCTCTG +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSFVRKA*FFFKSL
Trigger: CAGAGACTTGAAGAAAAAGCAAGCCTTACGAACAAA...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR CCA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTTTTCCTTTTAATCTCTaGTATCCTACTGCAAACTCA +
Preference number: 4 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSFPFNL*YPTANS
Trigger: TGAGTTTGCAGTAGGATACCAGAGATTAAAAGGAAA...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS TCA 90 bp ATTTGCCCTTGCTGCTCTGCTTCTGCTTCTCCAGCCGGGAGGCACTaGCTTCAAACACTTTCTCAGCTTCCCACTTCTGCTGGGCCTCTT +
Preference number: 5 (lower is better)
Translates to: ICPCCSASASPAGRH*LQTLSQLPTSAGPL
Trigger: AAGAGGCCCAGCAGAAGTGGGAAGCTGAGAAAGTGTTTGAAGTCAGTGCCTCCCGGCTGGAGAAGCAGAAGCAGAGCAGCAAGGGCAAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000235432.2
CDS-3UTR CAA 90 bp GGTTGTCAGGGTAATGTGCTGCCAGACGGGGTAGTTCTTTGCCACATAGATGGTCTGGCGAGCATTTCTTaGACCCACTCTACCCATGTG +
Preference number: 5 (lower is better)
Translates to: GCQGNVLPDGVVLCHIDGLASIS*THSTHV
Trigger: CACATGGGTAGAGTGGGTCAAAGAAATGCTCGCCAG...ACCATCTATGTGGCAAAGAACTACCCCGTCTGGCAGCACATTACCCTGACAACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237587.2
CDS GCA 90 bp GGATATGGGAAGGTGACAAAGTATTTGCCCTTGCTGCTCTGCTTCTaGTTCTCCAGCCGGGAGGCACTGACTTCAAACACTTTCTCAGCT +
Preference number: 5 (lower is better)
Translates to: GYGKVTKYLPLLLCF*FSSREALTSNTFSA
Trigger: AGCTGAGAAAGTGTTTGAAGTCAGTGCCTCCCGGCTGGAGAAGCAGAAGCAGAGCAGCAAGGGCAAATACTTTGTCACCTTCCCATATCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000235432.2
CDS CCA 90 bp CCCCCTGCAGCAGGTGTGCCACTGTGTAGAACGCCATGTAAATTGTaGAATCCGAGAGAGATTCGATTAACCACTGTTCATCCCAAGGCA +
Preference number: 5 (lower is better)
Translates to: PPAAGVPLCRTPCKL*NPREIRLTTVHPKA
Trigger: TGCCTTGGGATGAACAGTGGTTAATCGAATCTCTCTCGGATTCCACAATTTACATGGCGTTCTACACAGTGGCACACCTGCTGCAGGGGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR CAA 90 bp ACCGGCACCACTCCGTTGTGCTTGGTGAAGCCTTGGTATGACATATTCCTGGCTACAAAGTATTTGCCCTaGCTGCTCTGCTTCTGCTTC +
Preference number: 5 (lower is better)
Translates to: TGTTPLCLVKPWYDIFLATKYLP*LLCFCF
Trigger: GAAGCAGAAGCAGAGCAGCAAGGGCAAATACTTTGT...AGCCAGGAATATGTCATACCAAGGCTTCACCAAGCACAACGGAGTGGTGCCGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235432.2
CDS-3UTR CAA 90 bp ACAGCTATCTCCTTGCCTGATGTCGATTTTGGTGGAGAAGTGCCCACTCGATGGGACATCTTCTCCGAGTaGAGCAGCAGGTGTCCATTT +
Preference number: 5 (lower is better)
Translates to: TAISLPDVDFGGEVPTRWDIFSE*SSRCPF
Trigger: AAATGGACACCTGCTGCTCAACTCGGAGAAGATGTC...CCATCGAGTGGGCACTTCTCCACCAAAATCGACATCAGGCAAGGAGATAGCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237587.2
CDS GCA 90 bp AGCCGGGAGGCACTGACTTCAAACACTTTCTCAGCTTCCCACTTCTaGTGGGCCTCTTTCTCGATCTCCTTCAAGAAGTCTACTTTAGCA +
Preference number: 5 (lower is better)
Translates to: SREALTSNTFSASHF*WASFSISFKKSTLA
Trigger: TGCTAAAGTAGACTTCTTGAAGGAGATCGAGAAAGAGGCCCAGCAGAAGTGGGAAGCTGAGAAAGTGTTTGAAGTCAGTGCCTCCCGGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000235432.2
CDS GCA 90 bp CATTTCTTTGACCCACTCTACCCATGTGTACAGACGGAGGATGCCTaGGTCTGCCATGGCTTCCACAAAGTTAGCATCTTCAACAGTGTC +
Preference number: 5 (lower is better)
Translates to: HFFDPLYPCVQTEDA*VCHGFHKVSIFNSV
Trigger: GACACTGTTGAAGATGCTAACTTTGTGGAAGCCATGGCAGACGCAGGCATCCTCCGTCTGTACACATGGGTAGAGTGGGTCAAAGAAATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000237587.2
CDS-3UTR CAA 90 bp GCCAGACGGGGTAGTTCTTTGCCACATAGATGGTGCAGTGTGAGGGCCTCTGAGAAATTTGTCAACAGCTaGGCTCAAAGTGAGGAAGTT +
Preference number: 5 (lower is better)
Translates to: ARRGSSLPHRWCSVRASEKFVNS*AQSEEV
Trigger: AACTTCCTCACTTTGAGCCAAGCTGTTGACAAATTT...CTCAGAGGCCCTCACACTGCACCATCTATGTGGCAAAGAACTACCCCGTCTGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237587.2
CDS TCA 90 bp TGTGTCCCAAATGAAGGCGTCCATTCATGTATGGATATGGGAAGGTaGCAAAGTATTTGCCCTTGCTGCTCTGCTTCTGCTTCTCCAGCC +
Preference number: 5 (lower is better)
Translates to: CVPNEGVHSCMDMGR*QSICPCCSASASPA
Trigger: GGCTGGAGAAGCAGAAGCAGAGCAGCAAGGGCAAATACTTTGTCACCTTCCCATATCCATACATGAATGGACGCCTTCATTTGGGACACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000235432.2
CDS TCA 90 bp TATAATTCCTGCATTCATTTCACTGGCAAACACACGATCATTGAATaGGTCGGCAGGTCCACTTCTGAGGCTGCTGCAGCTGGCGAGCAT +
Preference number: 5 (lower is better)
Translates to: YNSCIHFTGKHTIIE*VGRSTSEAAAAGEH
Trigger: ATGCTCGCCAGCTGCAGCAGCCTCAGAAGTGGACCTGCCGACTCATTCAATGATCGTGTGTTTGCCAGTGAAATGAATGCAGGAATTATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS GCA 90 bp ATGTATGGATATGGGAAGGTGACAAAGTATTTGCCCTTGCTGCTCTaGTTCTGCTTCTCCAGCCGGGAGGCACTGACTTCAAACACTTTC +
Preference number: 5 (lower is better)
Translates to: MYGYGKVTKYLPLLL*FCFSSREALTSNTF
Trigger: GAAAGTGTTTGAAGTCAGTGCCTCCCGGCTGGAGAAGCAGAAGCAGAGCAGCAAGGGCAAATACTTTGTCACCTTCCCATATCCATACAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000235432.2
CDS GCA 90 bp ATAATCCAAGTACCACTGGTCACACAGGGCCACGACGCACTCATCTaGAGACCTCGACATCACTTGTTTTTCTGGCTCCATGTAGATAAG +
Preference number: 5 (lower is better)
Translates to: IIQVPLVTQGHDALI*RPRHHLFFWLHVDK
Trigger: CTTATCTACATGGAGCCAGAAAAACAAGTGATGTCGAGGTCTGCAGATGAGTGCGTCGTGGCCCTGTGTGACCAGTGGTACTTGGATTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS CCA 90 bp GGCCACGACGCACTCATCTGCAGACCTCGACATCACTTGTTTTTCTaGCTCCATGTAGATAAGCGCATCTCCAGCATCAATCATGTTTTT +
Preference number: 5 (lower is better)
Translates to: GHDALICRPRHHLFF*LHVDKRISSINHVF
Trigger: AAAAACATGATTGATGCTGGAGATGCGCTTATCTACATGGAGCCAGAAAAACAAGTGATGTCGAGGTCTGCAGATGAGTGCGTCGTGGCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR CAA 90 bp AACCATCCCGACTCTCCAATTTGCATGAGCTCAGTGAACCAGGTAGACCATGGTCTCAAAGTGAGGAAGTaGCCCGTAGATTTTGACATC +
Preference number: 5 (lower is better)
Translates to: NHPDSPICMSSVNQVDHGLKVRK*PVDFDI
Trigger: GATGTCAAAATCTACGGGCAACTTCCTCACTTTGAG...ACCATGGTCTACCTGGTTCACTGAGCTCATGCAAATTGGAGAGTCGGGATGGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237587.2
CDS CCA 90 bp GGAAAACGTGTGTCCCAAATGAAGGCGTCCATTCATGTATGGATATaGGAAGGTGACAAAGTATTTGCCCTTGCTGCTCTGCTTCTGCTT +
Preference number: 5 (lower is better)
Translates to: GKRVSQMKASIHVWI*EGDKVFALAALLLL
Trigger: AAGCAGAAGCAGAGCAGCAAGGGCAAATACTTTGTCACCTTCCCATATCCATACATGAATGGACGCCTTCATTTGGGACACACGTTTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000235432.2
CDS-3UTR CAA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTGTGAGGTGGACTTTCTaGCTCACCAGGTCCACGTGG +
Preference number: 5 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSVRWTF*LTRSTW
Trigger: CCACGTGGACCTGGTGAGCAAGAAAGTCCACCTCAC...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS TCA 90 bp CCTACTGCAAACTCACACTTGGATAAGGAAAACGTGTGTCCCAAATaGAGGCGTCCATTCATGTATGGATATGGGAAGGTGACAAAGTAT +
Preference number: 5 (lower is better)
Translates to: PTANSHLDKENVCPK*RRPFMYGYGKVTKY
Trigger: ATACTTTGTCACCTTCCCATATCCATACATGAATGGACGCCTTCATTTGGGACACACGTTTTCCTTATCCAAGTGTGAGTTTGCAGTAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000235432.2
CDS GCA 90 bp AAGCATGTTCTTGTAGCCAGTCTAAGGAAGCTTCAAAATTCTTCCTaGTCTCCTCGCAGAATGTTTCCATGTTCTTCAGGCACTGAAATG +
Preference number: 5 (lower is better)
Translates to: KHVLVASLRKLQNSS*SPRRMFPCSSGTEM
Trigger: CATTTCAGTGCCTGAAGAACATGGAAACATTCTGCGAGGAGAGCAGGAAGAATTTTGAAGCTTCCTTAGACTGGCTACAAGAACATGCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS CCA 90 bp CTTCAACTGATCCAGCTTCTCCTTTGGGATCTGAGTCTTAGGAAATaGAGCATCCTTGAAGAACACATAATCCCAAACGTCCTTTGTCAT +
Preference number: 5 (lower is better)
Translates to: LQLIQLLLWDLSLRK*SILEEHIIPNVLCH
Trigger: ATGACAAAGGACGTTTGGGATTATGTGTTCTTCAAGGATGCTCCATTTCCTAAGACTCAGATCCCAAAGGAGAAGCTGGATCAGTTGAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000237587.2
CDS-3UTR CAA 90 bp TATTTCTTCAACTCTGGCAAACTGCCTAGTTCACTAGCAATGACTTTGTTATCATTTGGAATCAGATCCTaGCCAGAGGCTCGAAGGTCC +
Preference number: 5 (lower is better)
Translates to: YFFNSGKLPSSLAMTLLSFGIRS*PEARRS
Trigger: GGACCTTCGAGCCTCTGGCAAGGATCTGATTCCAAA...TGATAACAAAGTCATTGCTAGTGAACTAGGCAGTTTGCCAGAGTTGAAGAAATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237587.2
CDS-3UTR CAA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTGCTTTGGCGGCAGCTTaGCTCTTTTTCCCTTTGGCT +
Preference number: 5 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSALAAA*LFFPLA
Trigger: AGCCAAAGGGAAAAAGAGCAAAGCTGCCGCCAAAGC...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR CAA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTACCACTCCGTTGTGCTaGGTGAAGCCTTGGTATGAC +
Preference number: 5 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSTTPLC*VKPWYD
Trigger: GTCATACCAAGGCTTCACCAAGCACAACGGAGTGGT...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR CAA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTTTTGGAATCAGATCCTaGCCAGAGGCTCGAAGGTCC +
Preference number: 5 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSFGIRS*PEARRS
Trigger: GGACCTTCGAGCCTCTGGCAAGGATCTGATTCCAAA...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000237587.2
CDS-3UTR CAA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTCTGGCGAGCATTTCTTaGACCCACTCTACCCATGTG +
Preference number: 5 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSLASIS*THSTHV
Trigger: CACATGGGTAGAGTGGGTCAAAGAAATGCTCGCCAG...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000237587.2
CDS-3UTR CAA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTTGCCTGATGTCGATTTaGGTGGAGAAGTGCCCACTC +
Preference number: 5 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSCLMSI*VEKCPL
Trigger: GAGTGGGCACTTCTCCACCAAAATCGACATCAGGCA...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR CAA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTGACATCTTCTCCGAGTaGAGCAGCAGGTGTCCATTT +
Preference number: 5 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSDIFSE*SSRCPF
Trigger: AAATGGACACCTGCTGCTCAACTCGGAGAAGATGTC...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000237587.2
CDS-3UTR CAA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTAGACGGGGTAGTTCTTaGCCACATAGATGGTGCAGT +
Preference number: 5 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSRRGSS*PHRWCS
Trigger: ACTGCACCATCTATGTGGCAAAGAACTACCCCGTCT...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR CAA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTGCCTCAGAGGCAAACTaGACTTCTATGTGTTCCAGC +
Preference number: 5 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSASEAN*TSMCSS
Trigger: GCTGGAACACATAGAAGTCAAGTTTGCCTCTGAGGC...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR CAA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTACAAAGTATTTGCCCTaGCTGCTCTGCTTCTGCTTC +
Preference number: 5 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSTKYLP*LLCFCF
Trigger: GAAGCAGAAGCAGAGCAGCAAGGGCAAATACTTTGT...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR CAA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTTTAGAAGATCCTGCTTaGGCGGCAGCTTTGCTCTTT +
Preference number: 5 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSLEDPA*AAALLF
Trigger: AAAGAGCAAAGCTGCCGCCAAAGCAGGATCTTCTAA...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR CAA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTAACACCCTCTCCAGTTaGTCTGTCATGATCCATGCA +
Preference number: 5 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSNTLSS*SVMIHA
Trigger: TGCATGGATCATGACAGACAAACTGGAGAGGGTGTT...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR CAA 90 bp CCTAGTTCACTAGCAATGACTTTGTTATCAGGCAACTTTCCATTGTTGGCCTCAAATATGAAAGATGATTaGGAATCAGATCCTTGCCAG +
Preference number: 5 (lower is better)
Translates to: PSSLAMTLLSGNFPLLASNMKDD*ESDPCQ
Trigger: CTGGCAAGGATCTGATTCCAAATCATCTTTCATATT...TGAGGCCAACAATGGAAAGTTGCCTGATAACAAAGTCATTGCTAGTGAACTAGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237587.2
CDS-3UTR CAA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTCTCAAAGTGAGGAAGTaGCCCGTAGATTTTGACATC +
Preference number: 5 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSLKVRK*PVDFDI
Trigger: GATGTCAAAATCTACGGGCAACTTCCTCACTTTGAG...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000237587.2
CDS-3UTR CAA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTCGCATCAGCTTCACTTaGGAAAGATCTTTGATCCCT +
Preference number: 5 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSRISFT*ERSLIP
Trigger: AGGGATCAAAGATCTTTCCAAAGTGAAGCTGATGCG...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR CAA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTTTGCTCTTTTTCCCTTaGGCTTTATCCCTCACTACT +
Preference number: 5 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSLLFFP*ALSLTT
Trigger: AGTAGTGAGGGATAAAGCCAAAGGGAAAAAGAGCAA...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR CAA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTTCAGGCCGCTTAATTTaGATGGATATGGTTCAAGCA +
Preference number: 5 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSSGRLI*MDMVQA
Trigger: TGCTTGAACCATATCCATCAAAATTAAGCGGCCTGA...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR CAA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTCTAAACCGTACGTTCTaGAGCAAGCATGTTCTTGTA +
Preference number: 5 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSLNRTF*SKHVLV
Trigger: TACAAGAACATGCTTGCTCAAGAACGTACGGTTTAG...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR CAA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTAGAACGCCATGTAAATaGTGGAATCCGAGAGAGATT +
Preference number: 5 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSRTPCK*WNPREI
Trigger: AATCTCTCTCGGATTCCACAATTTACATGGCGTTCT...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR CAA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTATTTCTCTTTTCAGCTaGTCAGCGCATGCCTTAATA +
Preference number: 5 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSISLFS*SAHALI
Trigger: TATTAAGGCATGCGCTGACAAGCTGAAAAGAGAAAT...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR CAA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTAAATTTGTCAACAGCTaGGCTCAAAGTGAGGAAGTT +
Preference number: 5 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSKFVNS*AQSEEV
Trigger: AACTTCCTCACTTTGAGCCAAGCTGTTGACAAATTT...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000237587.2
CDS-3UTR CAA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTTCACTAGCAATGACTTaGTTATCAGGCAACTTTCCA +
Preference number: 5 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSSLAMT*LSGNFP
Trigger: TGGAAAGTTGCCTGATAACAAAGTCATTGCTAGTGA...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS-3UTR CAA 90 bp AGAATTGGGATAATTCTGACTACATACAGAACTCAGCAGTTAGAAATGAAGTCTAATATGAAAGATGATTaGGAATCAGATCCTTGCCAG +
Preference number: 5 (lower is better)
Translates to: RIGIILTTYRTQQLEMKSNMKDD*ESDPCQ
Trigger: CTGGCAAGGATCTGATTCCAAATCATCTTTCATATT...AGACTTCATTTCTAACTGCTGAGTTCTGTATGTAGTCAGAATTATCCCAATTCT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000237587.2
CDS CAA 90 bp TCGGCAGGTCCACTTCTGAGGCTGCTGCAGCTGGCGAGCATTTCTTaGACCCACTCTACCCATGTGTACAGACGGAGGATGCCTGCGTCT +
Preference number: 6 (lower is better)
Translates to: SAGPLLRLLQLASIS*THSTHVYRRRMPAS
Trigger: AGACGCAGGCATCCTCCGTCTGTACACATGGGTAGAGTGGGTCAAAGAAATGCTCGCCAGCTGCAGCAGCCTCAGAAGTGGACCTGCCGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000237587.2
CDS CAA 72 bp AGCAGGTGTCCATTTGCTCGGACAGACACGGGCCACTaGTCACTTTGCTCTGGCCACATGGCCACATGGTTG +
Preference number: 6 (lower is better)
Translates to: SRCPFARTDTGH*SLCSGHMATWL
Trigger: CAACCATGTGGCCATGTGGCCAGAGCAAAGTGACAAGTGGCCCGTGTCTGTCCGAGCAAATGGACACCTGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000237587.2
CDS TCA 72 bp CATAATCCCAAACGTCCTTTGTCATCTGCTGGGGTCTaGTGCCCAGTGGAGACTCCGCCTGCCCATTCAGGT +
Preference number: 6 (lower is better)
Translates to: HNPKRPLSSAGV*CPVETPPAHSG
Trigger: ACCTGAATGGGCAGGCGGAGTCTCCACTGGGCATCAGACCCCAGCAGATGACAAAGGACGTTTGGGATTATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS TCA 72 bp TGCTGCTCTGCTTCTGCTTCTCCAGCCGGGAGGCACTaGCTTCAAACACTTTCTCAGCTTCCCACTTCTGCT +
Preference number: 6 (lower is better)
Translates to: CCSASASPAGRH*LQTLSQLPTSA
Trigger: AGCAGAAGTGGGAAGCTGAGAAAGTGTTTGAAGTCAGTGCCTCCCGGCTGGAGAAGCAGAAGCAGAGCAGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000235432.2
CDS GCA 72 bp GTACCACTGGTCACACAGGGCCACGACGCACTCATCTaGAGACCTCGACATCACTTGTTTTTCTGGCTCCAT +
Preference number: 6 (lower is better)
Translates to: VPLVTQGHDALI*RPRHHLFFWLH
Trigger: ATGGAGCCAGAAAAACAAGTGATGTCGAGGTCTGCAGATGAGTGCGTCGTGGCCCTGTGTGACCAGTGGTAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS GCA 72 bp TATGGGAAGGTGACAAAGTATTTGCCCTTGCTGCTCTaGTTCTGCTTCTCCAGCCGGGAGGCACTGACTTCA +
Preference number: 6 (lower is better)
Translates to: YGKVTKYLPLLL*FCFSSREALTS
Trigger: TGAAGTCAGTGCCTCCCGGCTGGAGAAGCAGAAGCAGAGCAGCAAGGGCAAATACTTTGTCACCTTCCCATA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000235432.2
CDS CAA 72 bp TCAGCCAGAGCCAGGCGCATTCCGTCAGCTGAAAATTaGTCAACAGCTTGGCTCAAAGTGAGGAAGTTGCCC +
Preference number: 6 (lower is better)
Translates to: SARARRIPSAEN*STAWLKVRKLP
Trigger: GGGCAACTTCCTCACTTTGAGCCAAGCTGTTGACAAATTTTCAGCTGACGGAATGCGCCTGGCTCTGGCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000237587.2
CDS CAA 90 bp CGTCCATTCATGTATGGATATGGGAAGGTGACAAAGTATTTGCCCTaGCTGCTCTGCTTCTGCTTCTCCAGCCGGGAGGCACTGACTTCA +
Preference number: 6 (lower is better)
Translates to: RPFMYGYGKVTKYLP*LLCFCFSSREALTS
Trigger: TGAAGTCAGTGCCTCCCGGCTGGAGAAGCAGAAGCAGAGCAGCAAGGGCAAATACTTTGTCACCTTCCCATATCCATACATGAATGGACG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000235432.2
CDS GCA 72 bp AAGGTGACAAAGTATTTGCCCTTGCTGCTCTGCTTCTaGTTCTCCAGCCGGGAGGCACTGACTTCAAACACT +
Preference number: 6 (lower is better)
Translates to: KVTKYLPLLLCF*FSSREALTSNT
Trigger: AGTGTTTGAAGTCAGTGCCTCCCGGCTGGAGAAGCAGAAGCAGAGCAGCAAGGGCAAATACTTTGTCACCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000235432.2
CDS CAA 72 bp ATGTATGGATATGGGAAGGTGACAAAGTATTTGCCCTaGCTGCTCTGCTTCTGCTTCTCCAGCCGGGAGGCA +
Preference number: 6 (lower is better)
Translates to: MYGYGKVTKYLP*LLCFCFSSREA
Trigger: TGCCTCCCGGCTGGAGAAGCAGAAGCAGAGCAGCAAGGGCAAATACTTTGTCACCTTCCCATATCCATACAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000235432.2
CDS CAA 72 bp TCCATTTGCTCGGACAGACACGGGCCACTTGTCACTTaGCTCTGGCCACATGGCCACATGGTTGTAAATGTA +
Preference number: 6 (lower is better)
Translates to: SICSDRHGPLVT*LWPHGHMVVNV
Trigger: TACATTTACAACCATGTGGCCATGTGGCCAGAGCAAAGTGACAAGTGGCCCGTGTCTGTCCGAGCAAATGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000237587.2
CDS CAA 72 bp GTATTTGTCTTTCGCAGCCTGGCAAACACACGATCATaGAATGAGTCGGCAGGTCCACTTCTGAGGCTGCTG +
Preference number: 6 (lower is better)
Translates to: VFVFRSLANTRS*NESAGPLLRLL
Trigger: CAGCAGCCTCAGAAGTGGACCTGCCGACTCATTCAATGATCGTGTGTTTGCCAGGCTGCGAAAGACAAATAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237587.2
CDS TCA 72 bp TGCATTCATTTCACTGGCAAACACACGATCATTGAATaGGTCGGCAGGTCCACTTCTGAGGCTGCTGCAGCT +
Preference number: 6 (lower is better)
Translates to: CIHFTGKHTIIE*VGRSTSEAAAA
Trigger: AGCTGCAGCAGCCTCAGAAGTGGACCTGCCGACTCATTCAATGATCGTGTGTTTGCCAGTGAAATGAATGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS CAA 72 bp CATCCCAAGGCAGACGAGTGCCTAAACCGTACGTTCTaGAGCAAGCATGTTCTTGTAGCCAGTCTAAGGAAG +
Preference number: 6 (lower is better)
Translates to: HPKADECLNRTF*SKHVLVASLRK
Trigger: CTTCCTTAGACTGGCTACAAGAACATGCTTGCTCAAGAACGTACGGTTTAGGCACTCGTCTGCCTTGGGATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS TCA 72 bp AGCTTGGCTCAAAGTGAGGAAGTTGCCCGTAGATTTTaGCATCTTCTCCGAGTTGAGCAGCAGGTGTCCATT +
Preference number: 6 (lower is better)
Translates to: SLAQSEEVARRF*HLLRVEQQVSI
Trigger: AATGGACACCTGCTGCTCAACTCGGAGAAGATGTCAAAATCTACGGGCAACTTCCTCACTTTGAGCCAAGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000237587.2
CDS GCA 72 bp GCACTGACTTCAAACACTTTCTCAGCTTCCCACTTCTaGTGGGCCTCTTTCTCGATCTCCTTCAAGAAGTCT +
Preference number: 6 (lower is better)
Translates to: ALTSNTFSASHF*WASFSISFKKS
Trigger: AGACTTCTTGAAGGAGATCGAGAAAGAGGCCCAGCAGAAGTGGGAAGCTGAGAAAGTGTTTGAAGTCAGTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000235432.2
CDS CAA 72 bp GGAGGGCAGCCATACAGCTCTATTTCTCTTTTCAGCTaGTCAGCGCATGCCTTAATAGGCATACCAGTACAG +
Preference number: 6 (lower is better)
Translates to: GGQPYSSISLFS*SAHALIGIPVQ
Trigger: CTGTACTGGTATGCCTATTAAGGCATGCGCTGACAAGCTGAAAAGAGAAATAGAGCTGTATGGCTGCCCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS CAA 72 bp ATTCCTGCATTCATTTCACTGGCAAACACACGATCATaGAATGAGTCGGCAGGTCCACTTCTGAGGCTGCTG +
Preference number: 6 (lower is better)
Translates to: IPAFISLANTRS*NESAGPLLRLL
Trigger: CAGCAGCCTCAGAAGTGGACCTGCCGACTCATTCAATGATCGTGTGTTTGCCAGTGAAATGAATGCAGGAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS CAA 90 bp CTGGCCACATGGCCACATGGTTGTAAATGTAATATGAAAGATGATTaGGAATCAGATCCTTGCCAGAGGCTCGAAGGTCCACTGGGTACC +
Preference number: 6 (lower is better)
Translates to: LATWPHGCKCNMKDD*ESDPCQRLEGPLGT
Trigger: GGTACCCAGTGGACCTTCGAGCCTCTGGCAAGGATCTGATTCCAAATCATCTTTCATATTACATTTACAACCATGTGGCCATGTGGCCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000237587.2
CDS CAA 90 bp CCGTCAGCTGAAAATTTGTCAACAGCTTGGCTCAAAGTGAGGAAGTaGCCCGTAGATTTTGACATCTTCTCCGAGTTGAGCAGCAGGTGT +
Preference number: 6 (lower is better)
Translates to: PSAENLSTAWLKVRK*PVDFDIFSELSSRC
Trigger: ACACCTGCTGCTCAACTCGGAGAAGATGTCAAAATCTACGGGCAACTTCCTCACTTTGAGCCAAGCTGTTGACAAATTTTCAGCTGACGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000237587.2
CDS CAA 90 bp GTTTTTATAATTCCTGCATTCATTTCACTGGCAAACACACGATCATaGAATGAGTCGGCAGGTCCACTTCTGAGGCTGCTGCAGCTGGCG +
Preference number: 6 (lower is better)
Translates to: VFIIPAFISLANTRS*NESAGPLLRLLQLA
Trigger: CGCCAGCTGCAGCAGCCTCAGAAGTGGACCTGCCGACTCATTCAATGATCGTGTGTTTGCCAGTGAAATGAATGCAGGAATTATAAAAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS CCA 72 bp GTGTCCCAAATGAAGGCGTCCATTCATGTATGGATATaGGAAGGTGACAAAGTATTTGCCCTTGCTGCTCTG +
Preference number: 6 (lower is better)
Translates to: VSQMKASIHVWI*EGDKVFALAAL
Trigger: CAGAGCAGCAAGGGCAAATACTTTGTCACCTTCCCATATCCATACATGAATGGACGCCTTCATTTGGGACAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000235432.2
CDS CAA 72 bp GCAGCAGGTGTGCCACTGTGTAGAACGCCATGTAAATaGTGGAATCCGAGAGAGATTCGATTAACCACTGTT +
Preference number: 6 (lower is better)
Translates to: AAGVPLCRTPCK*WNPREIRLTTV
Trigger: AACAGTGGTTAATCGAATCTCTCTCGGATTCCACAATTTACATGGCGTTCTACACAGTGGCACACCTGCTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS CCA 72 bp GCAGGTGTGCCACTGTGTAGAACGCCATGTAAATTGTaGAATCCGAGAGAGATTCGATTAACCACTGTTCAT +
Preference number: 6 (lower is better)
Translates to: AGVPLCRTPCKL*NPREIRLTTVH
Trigger: ATGAACAGTGGTTAATCGAATCTCTCTCGGATTCCACAATTTACATGGCGTTCTACACAGTGGCACACCTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097590.5
CDS CCA 72 bp CAGACACGGGCCACTTGTCACTTTGCTCTGGCCACATaGCCACATGGTTGTAAATGTAATATGAAAGATGAT +
Preference number: 6 (lower is better)
Translates to: QTRATCHFALAT*PHGCKCNMKDD
Trigger: ATCATCTTTCATATTACATTTACAACCATGTGGCCATGTGGCCAGAGCAAAGTGACAAGTGGCCCGTGTCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000237587.2
CDS TCA 72 bp CACAAATGTGGACAGAATGGAGTCAGAAGGATTGTCTaGACTTCAATAAAGCGGAACACAAGCTCTCTGTGC +
Preference number: 6 (lower is better)
Translates to: HKCGQNGVRRIV*TSIKRNTSSLC
Trigger: GCACAGAGAGCTTGTGTTCCGCTTTATTGAAGTTCAGACAATCCTTCTGACTCCATTCTGTCCACATTTGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000235845.2
CDS CCA 72 bp ATCCAGCTTCTCCTTTGGGATCTGAGTCTTAGGAAATaGAGCATCCTTGAAGAACACATAATCCCAAACGTC +
Preference number: 6 (lower is better)
Translates to: IQLLLWDLSLRK*SILEEHIIPNV
Trigger: GACGTTTGGGATTATGTGTTCTTCAAGGATGCTCCATTTCCTAAGACTCAGATCCCAAAGGAGAAGCTGGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000237587.2
CDS CAA 72 bp GAAAATTTGTCAACAGCTTGGCTCAAAGTGAGGAAGTaGCCCGTAGATTTTGACATCTTCTCCGAGTTGAGC +
Preference number: 6 (lower is better)
Translates to: ENLSTAWLKVRK*PVDFDIFSELS
Trigger: GCTCAACTCGGAGAAGATGTCAAAATCTACGGGCAACTTCCTCACTTTGAGCCAAGCTGTTGACAAATTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000237587.2
CDS GCA 72 bp AAATGTAATATGAAAGATGATTTGGAATCAGATCCTTaGCAGAGGCTCGAAGGTCCACTGGGTACCAAAACT +
Preference number: 6 (lower is better)
Translates to: KCNMKDDLESDP*QRLEGPLGTKT
Trigger: AGTTTTGGTACCCAGTGGACCTTCGAGCCTCTGGCAAGGATCTGATTCCAAATCATCTTTCATATTACATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097590.5
ENSMUST00000237587.2