RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LARP7 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000027968

Ensembl transcript IDs: ENSMUST00000029588.10, ENSMUST00000197668.2

Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp GGGTTTCTGCTTCGGAGCCCTCAGAGGCCGTCCTTGGTCTCTTCGTaGCTTTACACACGCCCGAGCTGCTGCTGTCCACGGCCGACTCTT +
Preference number: 5 (lower is better)
Translates to: GFLLRSPQRPSLVSS*LYTRPSCCCPRPTL
Trigger: AAGAGTCGGCCGTGGACAGCAGCAGCTCGGGCGTGTGTAAAGCCACGAAGAGACCAAGGACGGCCTCTGAGGGCTCCGAAGCAGAAACCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029588.10
CDS CCA 90 bp TGGAGCTTCCGGGGTTTCTGCTTCGGAGCCCTCAGAGGCCGTCCTTaGTCTCTTCGTGGCTTTACACACGCCCGAGCTGCTGCTGTCCAC +
Preference number: 5 (lower is better)
Translates to: WSFRGFCFGALRGRP*SLRGFTHARAAAVH
Trigger: GTGGACAGCAGCAGCTCGGGCGTGTGTAAAGCCACGAAGAGACCAAGGACGGCCTCTGAGGGCTCCGAAGCAGAAACCCCGGAAGCTCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029588.10
CDS GCA 90 bp CAGAGGCCGTCCTTGGTCTCTTCGTGGCTTTACACACGCCCGAGCTaGTGCTGTCCACGGCCGACTCTTTGGCCTGCACACTCTCTTCCT +
Preference number: 5 (lower is better)
Translates to: QRPSLVSSWLYTRPS*CCPRPTLWPAHSLP
Trigger: AGGAAGAGAGTGTGCAGGCCAAAGAGTCGGCCGTGGACAGCAGCAGCTCGGGCGTGTGTAAAGCCACGAAGAGACCAAGGACGGCCTCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029588.10
CDS CCA 90 bp GGCAGTCTTCGTCCTCGGCGCTGCACCTCTCCCTCTTCCCTGCCCTaGCTTCAGGTAAGCTGGATGCTTCCACCTTGTCCCGCTTCTTCT +
Preference number: 5 (lower is better)
Translates to: GSLRPRRCTSPSSLP*LQVSWMLPPCPASS
Trigger: AGAAGAAGCGGGACAAGGTGGAAGCATCCAGCTTACCTGAAGCCAGGGCAGGGAAGAGGGAGAGGTGCAGCGCCGAGGACGAAGACTGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029588.10
CDS GCA 90 bp AGGCCGTCCTTGGTCTCTTCGTGGCTTTACACACGCCCGAGCTGCTaGTGTCCACGGCCGACTCTTTGGCCTGCACACTCTCTTCCTTCT +
Preference number: 5 (lower is better)
Translates to: RPSLVSSWLYTRPSC*CPRPTLWPAHSLPS
Trigger: AGAAGGAAGAGAGTGTGCAGGCCAAAGAGTCGGCCGTGGACAGCAGCAGCTCGGGCGTGTGTAAAGCCACGAAGAGACCAAGGACGGCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029588.10
CDS GCA 90 bp CTTCTTCTTTTTCTTTGCAGGTTGCTTTGGAGCTTCCGGGGTTTCTaGTTCGGAGCCCTCAGAGGCCGTCCTTGGTCTCTTCGTGGCTTT +
Preference number: 5 (lower is better)
Translates to: LLLFLCRLLWSFRGF*FGALRGRPWSLRGF
Trigger: AAAGCCACGAAGAGACCAAGGACGGCCTCTGAGGGCTCCGAAGCAGAAACCCCGGAAGCTCCAAAGCAACCTGCAAAGAAAAAGAAGAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029588.10
CDS GCA 90 bp GCTCACAATCTTCACAATCACTCCAGTCACAAACTGTGGGCCTTGTaGACTGACCTTCTCCTGGGTGGAACACTCTTGACCACTGCCTGC +
Preference number: 5 (lower is better)
Translates to: AHNLHNHSSHKLWAL*TDLLLGGTLLTTAC
Trigger: GCAGGCAGTGGTCAAGAGTGTTCCACCCAGGAGAAGGTCAGTGCACAAGGCCCACAGTTTGTGACTGGAGTGATTGTGAAGATTGTGAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029588.10
CDS CCA 90 bp AGGCTCTCCGCTCACAATCTTCACAATCACTCCAGTCACAAACTGTaGGCCTTGTGCACTGACCTTCTCCTGGGTGGAACACTCTTGACC +
Preference number: 5 (lower is better)
Translates to: RLSAHNLHNHSSHKL*ALCTDLLLGGTLLT
Trigger: GGTCAAGAGTGTTCCACCCAGGAGAAGGTCAGTGCACAAGGCCCACAGTTTGTGACTGGAGTGATTGTGAAGATTGTGAGCGGAGAGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029588.10
CDS TCA 90 bp AACTGTGGGCCTTGTGCACTGACCTTCTCCTGGGTGGAACACTCTTaGCCACTGCCTGCTGTAGGCGCTTTACAGTCTGTTTCCATTTCT +
Preference number: 5 (lower is better)
Translates to: NCGPCALTFSWVEHS*PLPAVGALQSVSIS
Trigger: AGAAATGGAAACAGACTGTAAAGCGCCTACAGCAGGCAGTGGTCAAGAGTGTTCCACCCAGGAGAAGGTCAGTGCACAAGGCCCACAGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029588.10
CDS TCA 90 bp TTGGCCTGTCTATCTACCAAAATCTTCTGCCAGTACCTCTGCTCATaGTCCCCAGAAAGGACCTCGAGGTTCCAACTGTGCTTCTTTCTA +
Preference number: 5 (lower is better)
Translates to: LACLSTKIFCQYLCS*SPERTSRFQLCFFL
Trigger: TAGAAAGAAGCACAGTTGGAACCTCGAGGTCCTTTCTGGGGATCATGAGCAGAGGTACTGGCAGAAGATTTTGGTAGATAGACAGGCCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029588.10
CDS GCA 90 bp AAGGACCTCGAGGTTCCAACTGTGCTTCTTTCTAATTTCAGTCTGTaGATTCATTACTGCCTGAGCATCCTCGGGGGTTTTAAATCGGGC +
Preference number: 5 (lower is better)
Translates to: KDLEVPTVLLSNFSL*IHYCLSILGGFKSG
Trigger: GCCCGATTTAAAACCCCCGAGGATGCTCAGGCAGTAATGAATGCACAGACTGAAATTAGAAAGAAGCACAGTTGGAACCTCGAGGTCCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029588.10
CDS TCA 90 bp CCATCTCTAGACTTTTCAATTTGCTCTCGCAGAAACTTGTCCTTGTaGAGGTTTGCATCTCCAAACCAGAAGTCCACCTGCTTAGCAATA +
Preference number: 5 (lower is better)
Translates to: PSLDFSICSRRNLSL*RFASPNQKSTCLAI
Trigger: TATTGCTAAGCAGGTGGACTTCTGGTTTGGAGATGCAAACCTTCACAAGGACAAGTTTCTGCGAGAGCAAATTGAAAAGTCTAGAGATGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029588.10
ENSMUST00000197668.2
CDS GCA 90 bp AGACTTTTCAATTTGCTCTCGCAGAAACTTGTCCTTGTGAAGGTTTaGATCTCCAAACCAGAAGTCCACCTGCTTAGCAATATCTGCAAG +
Preference number: 5 (lower is better)
Translates to: RLFNLLSQKLVLVKV*ISKPEVHLLSNICK
Trigger: CTTGCAGATATTGCTAAGCAGGTGGACTTCTGGTTTGGAGATGCAAACCTTCACAAGGACAAGTTTCTGCGAGAGCAAATTGAAAAGTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029588.10
ENSMUST00000197668.2
CDS CAA 72 bp CCGGGGTTTCTGCTTCGGAGCCCTCAGAGGCCGTCCTaGGTCTCTTCGTGGCTTTACACACGCCCGAGCTGC +
Preference number: 6 (lower is better)
Translates to: PGFLLRSPQRPS*VSSWLYTRPSC
Trigger: GCAGCTCGGGCGTGTGTAAAGCCACGAAGAGACCAAGGACGGCCTCTGAGGGCTCCGAAGCAGAAACCCCGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029588.10
CDS CCA 72 bp CGGGGTTTCTGCTTCGGAGCCCTCAGAGGCCGTCCTTaGTCTCTTCGTGGCTTTACACACGCCCGAGCTGCT +
Preference number: 6 (lower is better)
Translates to: RGFCFGALRGRP*SLRGFTHARAA
Trigger: AGCAGCTCGGGCGTGTGTAAAGCCACGAAGAGACCAAGGACGGCCTCTGAGGGCTCCGAAGCAGAAACCCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029588.10
CDS CAA 90 bp TTGGAGCTTCCGGGGTTTCTGCTTCGGAGCCCTCAGAGGCCGTCCTaGGTCTCTTCGTGGCTTTACACACGCCCGAGCTGCTGCTGTCCA +
Preference number: 6 (lower is better)
Translates to: LELPGFLLRSPQRPS*VSSWLYTRPSCCCP
Trigger: TGGACAGCAGCAGCTCGGGCGTGTGTAAAGCCACGAAGAGACCAAGGACGGCCTCTGAGGGCTCCGAAGCAGAAACCCCGGAAGCTCCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029588.10
CDS GCA 72 bp TTGGTCTCTTCGTGGCTTTACACACGCCCGAGCTGCTaGTGTCCACGGCCGACTCTTTGGCCTGCACACTCT +
Preference number: 6 (lower is better)
Translates to: LVSSWLYTRPSC*CPRPTLWPAHS
Trigger: AGAGTGTGCAGGCCAAAGAGTCGGCCGTGGACAGCAGCAGCTCGGGCGTGTGTAAAGCCACGAAGAGACCAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029588.10
CDS CAA 72 bp CACACGCCCGAGCTGCTGCTGTCCACGGCCGACTCTTaGGCCTGCACACTCTCTTCCTTCTTTATTCTGCCT +
Preference number: 6 (lower is better)
Translates to: HTPELLLSTADS*ACTLSSFFILP
Trigger: AGGCAGAATAAAGAAGGAAGAGAGTGTGCAGGCCAAAGAGTCGGCCGTGGACAGCAGCAGCTCGGGCGTGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029588.10
CDS CCA 72 bp ACACGCCCGAGCTGCTGCTGTCCACGGCCGACTCTTTaGCCTGCACACTCTCTTCCTTCTTTATTCTGCCTT +
Preference number: 6 (lower is better)
Translates to: TRPSCCCPRPTL*PAHSLPSLFCL
Trigger: AAGGCAGAATAAAGAAGGAAGAGAGTGTGCAGGCCAAAGAGTCGGCCGTGGACAGCAGCAGCTCGGGCGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029588.10
CDS GCA 72 bp TTTCTTTGCAGGTTGCTTTGGAGCTTCCGGGGTTTCTaGTTCGGAGCCCTCAGAGGCCGTCCTTGGTCTCTT +
Preference number: 6 (lower is better)
Translates to: FLCRLLWSFRGF*FGALRGRPWSL
Trigger: AAGAGACCAAGGACGGCCTCTGAGGGCTCCGAAGCAGAAACCCCGGAAGCTCCAAAGCAACCTGCAAAGAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029588.10
CDS CAA 72 bp TCCTCAGTAGAGCAGAATTCTAAGTCTCTGCTCTCCTaGGAGACCTCGGAAGCTGCTTGGCCGACGCCATCC +
Preference number: 6 (lower is better)
Translates to: SSVEQNSKSLLS*ETSEAAWPTPS
Trigger: GGATGGCGTCGGCCAAGCAGCTTCCGAGGTCTCCAAGGAGAGCAGAGACTTAGAATTCTGCTCTACTGAGGA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029588.10
CDS CAA 72 bp GCCTTGTGCACTGACCTTCTCCTGGGTGGAACACTCTaGACCACTGCCTGCTGTAGGCGCTTTACAGTCTGT +
Preference number: 6 (lower is better)
Translates to: ALCTDLLLGGTL*TTACCRRFTVC
Trigger: ACAGACTGTAAAGCGCCTACAGCAGGCAGTGGTCAAGAGTGTTCCACCCAGGAGAAGGTCAGTGCACAAGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029588.10
CDS TCA 72 bp CCTTGTGCACTGACCTTCTCCTGGGTGGAACACTCTTaGCCACTGCCTGCTGTAGGCGCTTTACAGTCTGTT +
Preference number: 6 (lower is better)
Translates to: PCALTFSWVEHS*PLPAVGALQSV
Trigger: AACAGACTGTAAAGCGCCTACAGCAGGCAGTGGTCAAGAGTGTTCCACCCAGGAGAAGGTCAGTGCACAAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029588.10
CDS TCA 72 bp CAATCACTCCAGTCACAAACTGTGGGCCTTGTGCACTaGCCTTCTCCTGGGTGGAACACTCTTGACCACTGC +
Preference number: 6 (lower is better)
Translates to: QSLQSQTVGLVH*PSPGWNTLDHC
Trigger: GCAGTGGTCAAGAGTGTTCCACCCAGGAGAAGGTCAGTGCACAAGGCCCACAGTTTGTGACTGGAGTGATTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029588.10
CDS GCA 72 bp TCCACCTTGTCCCGCTTCTTCTTTTTCTTTGCAGGTTaGTTTGGAGCTTCCGGGGTTTCTGCTTCGGAGCCC +
Preference number: 6 (lower is better)
Translates to: STLSRFFFFFAG*FGASGVSASEP
Trigger: GGGCTCCGAAGCAGAAACCCCGGAAGCTCCAAAGCAACCTGCAAAGAAAAAGAAGAAGCGGGACAAGGTGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029588.10
CDS CAA 72 bp CCTTGTCCCGCTTCTTCTTTTTCTTTGCAGGTTGCTTaGGAGCTTCCGGGGTTTCTGCTTCGGAGCCCTCAG +
Preference number: 6 (lower is better)
Translates to: PCPASSFSLQVA*ELPGFLLRSPQ
Trigger: CTGAGGGCTCCGAAGCAGAAACCCCGGAAGCTCCAAAGCAACCTGCAAAGAAAAAGAAGAAGCGGGACAAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029588.10
CDS CAA 90 bp TCCCTCTTCCCTGCCCTGGCTTCAGGTAAGCTGGATGCTTCCACCTaGTCCCGCTTCTTCTTTTTCTTTGCAGGTTGCTTTGGAGCTTCC +
Preference number: 6 (lower is better)
Translates to: SLFPALASGKLDAST*SRFFFFFAGCFGAS
Trigger: GGAAGCTCCAAAGCAACCTGCAAAGAAAAAGAAGAAGCGGGACAAGGTGGAAGCATCCAGCTTACCTGAAGCCAGGGCAGGGAAGAGGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029588.10
CDS CAA 90 bp TCCGCTCACAATCTTCACAATCACTCCAGTCACAAACTGTGGGCCTaGTGCACTGACCTTCTCCTGGGTGGAACACTCTTGACCACTGCC +
Preference number: 6 (lower is better)
Translates to: SAHNLHNHSSHKLWA*CTDLLLGGTLLTTA
Trigger: GGCAGTGGTCAAGAGTGTTCCACCCAGGAGAAGGTCAGTGCACAAGGCCCACAGTTTGTGACTGGAGTGATTGTGAAGATTGTGAGCGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029588.10
CDS GCA 72 bp CTTCACAATCACTCCAGTCACAAACTGTGGGCCTTGTaGACTGACCTTCTCCTGGGTGGAACACTCTTGACC +
Preference number: 6 (lower is better)
Translates to: LHNHSSHKLWAL*TDLLLGGTLLT
Trigger: GGTCAAGAGTGTTCCACCCAGGAGAAGGTCAGTGCACAAGGCCCACAGTTTGTGACTGGAGTGATTGTGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029588.10
CDS CAA 90 bp AAACTGTGGGCCTTGTGCACTGACCTTCTCCTGGGTGGAACACTCTaGACCACTGCCTGCTGTAGGCGCTTTACAGTCTGTTTCCATTTC +
Preference number: 6 (lower is better)
Translates to: KLWALCTDLLLGGTL*TTACCRRFTVCFHF
Trigger: GAAATGGAAACAGACTGTAAAGCGCCTACAGCAGGCAGTGGTCAAGAGTGTTCCACCCAGGAGAAGGTCAGTGCACAAGGCCCACAGTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029588.10
CDS CCA 72 bp GCTCACAATCTTCACAATCACTCCAGTCACAAACTGTaGGCCTTGTGCACTGACCTTCTCCTGGGTGGAACA +
Preference number: 6 (lower is better)
Translates to: AHNLHNHSSHKL*ALCTDLLLGGT
Trigger: TGTTCCACCCAGGAGAAGGTCAGTGCACAAGGCCCACAGTTTGTGACTGGAGTGATTGTGAAGATTGTGAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029588.10
CDS TCA 72 bp CTATCTACCAAAATCTTCTGCCAGTACCTCTGCTCATaGTCCCCAGAAAGGACCTCGAGGTTCCAACTGTGC +
Preference number: 6 (lower is better)
Translates to: LSTKIFCQYLCS*SPERTSRFQLC
Trigger: GCACAGTTGGAACCTCGAGGTCCTTTCTGGGGATCATGAGCAGAGGTACTGGCAGAAGATTTTGGTAGATAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029588.10
CDS CAA 72 bp AATCTTCACAATCACTCCAGTCACAAACTGTGGGCCTaGTGCACTGACCTTCTCCTGGGTGGAACACTCTTG +
Preference number: 6 (lower is better)
Translates to: NLHNHSSHKLWA*CTDLLLGGTLL
Trigger: CAAGAGTGTTCCACCCAGGAGAAGGTCAGTGCACAAGGCCCACAGTTTGTGACTGGAGTGATTGTGAAGATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029588.10
CDS GCA 72 bp ATCTCCAAACCAGAAGTCCACCTGCTTAGCAATATCTaGAAGCACCTGTTTAACCCGGGAGCGCTTCTTTTT +
Preference number: 6 (lower is better)
Translates to: ISKPEVHLLSNI*KHLFNPGALLF
Trigger: AAAAAGAAGCGCTCCCGGGTTAAACAGGTGCTTGCAGATATTGCTAAGCAGGTGGACTTCTGGTTTGGAGAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029588.10
ENSMUST00000197668.2
CDS TCA 72 bp GACTTTTCAATTTGCTCTCGCAGAAACTTGTCCTTGTaGAGGTTTGCATCTCCAAACCAGAAGTCCACCTGC +
Preference number: 6 (lower is better)
Translates to: DFSICSRRNLSL*RFASPNQKSTC
Trigger: GCAGGTGGACTTCTGGTTTGGAGATGCAAACCTTCACAAGGACAAGTTTCTGCGAGAGCAAATTGAAAAGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029588.10
ENSMUST00000197668.2
CDS GCA 72 bp GTGCTTCTTTCTAATTTCAGTCTGTGCATTCATTACTaGCTGAGCATCCTCGGGGGTTTTAAATCGGGCATG +
Preference number: 6 (lower is better)
Translates to: VLLSNFSLCIHY*LSILGGFKSGM
Trigger: CATGCCCGATTTAAAACCCCCGAGGATGCTCAGGCAGTAATGAATGCACAGACTGAAATTAGAAAGAAGCAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029588.10
CDS TCA 72 bp TTCTTTCTAATTTCAGTCTGTGCATTCATTACTGCCTaGGCATCCTCGGGGGTTTTAAATCGGGCATGGCAT +
Preference number: 6 (lower is better)
Translates to: FFLISVCAFITA*ASSGVLNRAWH
Trigger: ATGCCATGCCCGATTTAAAACCCCCGAGGATGCTCAGGCAGTAATGAATGCACAGACTGAAATTAGAAAGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029588.10
CDS CAA 90 bp AATGCTCTGGCTATTAGCTTCCCATCAGTTGTCAGCTTCTTCATTTaGTTAAAAGACACCAGGAGAGAAATGTCCACATATCCATCTCTA +
Preference number: 6 (lower is better)
Translates to: NALAISFPSVVSFFI*LKDTRREMSTYPSL
Trigger: TAGAGATGGATATGTGGACATTTCTCTCCTGGTGTCTTTTAACAAAATGAAGAAGCTGACAACTGATGGGAAGCTAATAGCCAGAGCATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029588.10
CDS CAA 72 bp AGAAATGTCCACATATCCATCTCTAGACTTTTCAATTaGCTCTCGCAGAAACTTGTCCTTGTGAAGGTTTGC +
Preference number: 6 (lower is better)
Translates to: RNVHISISRLFN*LSQKLVLVKVC
Trigger: GCAAACCTTCACAAGGACAAGTTTCTGCGAGAGCAAATTGAAAAGTCTAGAGATGGATATGTGGACATTTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029588.10
ENSMUST00000197668.2