Pregenerated sensors for LARP6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000034839Ensembl transcript IDs: ENSMUST00000038407.6
Found 101 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GCTGCCTGTTCAGCGAGACTCCTAGAGATGACAGACCTCCCAGGCTaGCAGAAGCCTCCAGGAGAGTCCGGGACTGCCCTGCAGGGACAC | + |
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Preference number: 1 (lower is better) Translates to: AACSARLLEMTDLPG*QKPPGESGTALQGH Trigger: GTGTCCCTGCAGGGCAGTCCCGGACTCTCCTGGAGGCTTCTGGCAGCCTGGGAGGTCTGTCATCTCTAGGAGTCTCGCTGAACAGGCAGC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| 3UTR TCA 90 bp | GTCCCACAGCCCTTCAGAGCCACCACACTAACACATGCCAAGCATTaGCAGAACAGTGGCCTTGCTGAGAGCAACAGCCCCAGCCAGAAG | + |
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Preference number: 1 (lower is better) Translates to: VPQPFRATTLTHAKH*QNSGLAESNSPSQK Trigger: CTTCTGGCTGGGGCTGTTGCTCTCAGCAAGGCCACTGTTCTGTCAATGCTTGGCATGTGTTAGTGTGGTGGCTCTGAAGGGCTGTGGGAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| 3UTR GCA 90 bp | ACTGTTAGTCTGGAACGCTGTGGAGACAGCAGGAACTGTCTAAGCTaGCTGTTCAGCGAGACTCCTAGAGATGACAGACCTCCCAGGCTG | + |
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Preference number: 1 (lower is better) Translates to: TVSLERCGDSRNCLS*LFSETPRDDRPPRL Trigger: CAGCCTGGGAGGTCTGTCATCTCTAGGAGTCTCGCTGAACAGGCAGCTTAGACAGTTCCTGCTGTCTCCACAGCGTTCCAGACTAACAGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| 3UTR TCA 90 bp | CACCATGCTATTGACTGTAGGATTTACCATAAAGCACATCTCCTTTaGGGTCTTAAGAGGAGCCCTTGCGCGGCCTGCCAAAGACAGCTC | + |
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Preference number: 1 (lower is better) Translates to: HHAIDCRIYHKAHLL*GLKRSPCAACQRQL Trigger: GAGCTGTCTTTGGCAGGCCGCGCAAGGGCTCCTCTTAAGACCTCAAAGGAGATGTGCTTTATGGTAAATCCTACAGTCAATAGCATGGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| 3UTR TCA 90 bp | CCTCAGATAAAGGACTTCCAGTGGGTGTTTTATTATTTATTCACTTaGCAGGGAACAGACACACTCAGTCCTATGAGACACCATGCTATT | + |
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Preference number: 1 (lower is better) Translates to: PQIKDFQWVFYYLFT*QGTDTLSPMRHHAI Trigger: AATAGCATGGTGTCTCATAGGACTGAGTGTGTCTGTTCCCTGTCAAGTGAATAAATAATAAAACACCCACTGGAAGTCCTTTATCTGAGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| 3UTR TCA 90 bp | TTTATTATTTATTCACTTGACAGGGAACAGACACACTCAGTCCTATaGGACACCATGCTATTGACTGTAGGATTTACCATAAAGCACATC | + |
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Preference number: 1 (lower is better) Translates to: FIIYSLDREQTHSVL*DTMLLTVGFTIKHI Trigger: GATGTGCTTTATGGTAAATCCTACAGTCAATAGCATGGTGTCTCATAGGACTGAGTGTGTCTGTTCCCTGTCAAGTGAATAAATAATAAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| 3UTR-3UTR CCA 90 bp | TCCCAGGCTGCCAGAAGCCTCCAGGAGAGTCCGGGACTGCCCTGCAGGGACACCACGATCCTAAACCCATaGCCCACCAGACAGTTTGTA | + |
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Preference number: 2 (lower is better) Translates to: SQAARSLQESPGLPCRDTTILNP*PTRQFV Trigger: TACAAACTGTCTGGTGGGCCATGGGTTTAGGATCGT...GGTGTCCCTGCAGGGCAGTCCCGGACTCTCCTGGAGGCTTCTGGCAGCCTGGGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| 3UTR-3UTR GCA 90 bp | AAAGGCATCTCTGTGACCTCAGATAAAGGACTTCCAGTGGGTGTTTTATTATTTCACCACACTAACACATaGCAAGCATTGACAGAACAG | + |
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Preference number: 2 (lower is better) Translates to: KGISVTSDKGLPVGVLLFHHTNT*QALTEQ Trigger: CTGTTCTGTCAATGCTTGGCATGTGTTAGTGTGGTG...AAATAATAAAACACCCACTGGAAGTCCTTTATCTGAGGTCACAGAGATGCCTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| 3UTR TCA 72 bp | CCCTTCAGAGCCACCACACTAACACATGCCAAGCATTaGCAGAACAGTGGCCTTGCTGAGAGCAACAGCCCC | + |
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Preference number: 3 (lower is better) Translates to: PFRATTLTHAKH*QNSGLAESNSP Trigger: GGGGCTGTTGCTCTCAGCAAGGCCACTGTTCTGTCAATGCTTGGCATGTGTTAGTGTGGTGGCTCTGAAGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| 3UTR GCA 72 bp | CTGGAACGCTGTGGAGACAGCAGGAACTGTCTAAGCTaGCTGTTCAGCGAGACTCCTAGAGATGACAGACCT | + |
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Preference number: 3 (lower is better) Translates to: LERCGDSRNCLS*LFSETPRDDRP Trigger: AGGTCTGTCATCTCTAGGAGTCTCGCTGAACAGGCAGCTTAGACAGTTCCTGCTGTCTCCACAGCGTTCCAG 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| 3UTR TCA 72 bp | AACACATGCCAAGCATTGACAGAACAGTGGCCTTGCTaGGAGCAACAGCCCCAGCCAGAAGACGATCCTAAA | + |
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Preference number: 3 (lower is better) Translates to: NTCQALTEQWPC*EQQPQPEDDPK Trigger: TTTAGGATCGTCTTCTGGCTGGGGCTGTTGCTCTCAGCAAGGCCACTGTTCTGTCAATGCTTGGCATGTGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| 3UTR TCA 72 bp | ATTGACTGTAGGATTTACCATAAAGCACATCTCCTTTaGGGTCTTAAGAGGAGCCCTTGCGCGGCCTGCCAA | + |
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Preference number: 3 (lower is better) Translates to: IDCRIYHKAHLL*GLKRSPCAACQ Trigger: TTGGCAGGCCGCGCAAGGGCTCCTCTTAAGACCTCAAAGGAGATGTGCTTTATGGTAAATCCTACAGTCAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| 3UTR TCA 72 bp | GGGCCTAGAAACTTTTATTTCTTGCAAGTTCTCAGGTaGTGTCAAACACTGTTAGTCTGGAACGCTGTGGAG | + |
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Preference number: 3 (lower is better) Translates to: GPRNFYFLQVLR*CQTLLVWNAVE Trigger: CTCCACAGCGTTCCAGACTAACAGTGTTTGACATCACCTGAGAACTTGCAAGAAATAAAAGTTTCTAGGCCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| 3UTR TCA 72 bp | TATTCACTTGACAGGGAACAGACACACTCAGTCCTATaGGACACCATGCTATTGACTGTAGGATTTACCATA | + |
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Preference number: 3 (lower is better) Translates to: YSLDREQTHSVL*DTMLLTVGFTI Trigger: TATGGTAAATCCTACAGTCAATAGCATGGTGTCTCATAGGACTGAGTGTGTCTGTTCCCTGTCAAGTGAATA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| 3UTR TCA 72 bp | AAGGACTTCCAGTGGGTGTTTTATTATTTATTCACTTaGCAGGGAACAGACACACTCAGTCCTATGAGACAC | + |
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Preference number: 3 (lower is better) Translates to: KDFQWVFYYLFT*QGTDTLSPMRH Trigger: GTGTCTCATAGGACTGAGTGTGTCTGTTCCCTGTCAAGTGAATAAATAATAAAACACCCACTGGAAGTCCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| CDS-3UTR CCA 90 bp | TCCCAGGCTGCCAGAAGCCTCCAGGAGAGTCCGGGACTGCCCTGCAGGGACACCACTGAGGTACCGGGCTaGGTCCCCCGCTGCCCGCGC | + |
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Preference number: 4 (lower is better) Translates to: SQAARSLQESPGLPCRDTTEVPG*VPRCPR Trigger: GCGCGGGCAGCGGGGGACCCAGCCCGGTACCTCAGT...GGTGTCCCTGCAGGGCAGTCCCGGACTCTCCTGGAGGCTTCTGGCAGCCTGGGA 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| CDS-3UTR GCA 90 bp | GGCTGCCAGAAGCCTCCAGGAGAGTCCGGGACTGCCCTGCAGGGACACCGTGAGTTGTTGCTGGCCGCGTaGCGCCGGCCGGCCATGGGA | + |
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Preference number: 4 (lower is better) Translates to: GCQKPPGESGTALQGHRELLLAA*RRPAMG Trigger: TCCCATGGCCGGCCGGCGGCACGCGGCCAGCAACAA...CTCACGGTGTCCCTGCAGGGCAGTCCCGGACTCTCCTGGAGGCTTCTGGCAGCC 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| CDS-3UTR CCA 90 bp | TCCCAGGCTGCCAGAAGCCTCCAGGAGAGTCCGGGACTGCCCTGCAGGGACACCGTCCCCATCTCAGCCTaGCGTCGTCTGCGAACCCAG | + |
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Preference number: 4 (lower is better) Translates to: SQAARSLQESPGLPCRDTVPISA*RRLRTQ Trigger: CTGGGTTCGCAGACGACGCCAGGCTGAGATGGGGAC...GGTGTCCCTGCAGGGCAGTCCCGGACTCTCCTGGAGGCTTCTGGCAGCCTGGGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| CDS-3UTR GCA 90 bp | GGCTGCCAGAAGCCTCCAGGAGAGTCCGGGACTGCCCTGCAGGGACACCGTGAGTTCTGGAGACACCCTTaGGCTGTGCCAAGGGGCTGC | + |
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Preference number: 4 (lower is better) Translates to: GCQKPPGESGTALQGHREFWRHP*AVPRGC Trigger: GCAGCCCCTTGGCACAGCGCAAGGGTGTCTCCAGAA...CTCACGGTGTCCCTGCAGGGCAGTCCCGGACTCTCCTGGAGGCTTCTGGCAGCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| CDS-3UTR CCA 90 bp | TCCCAGGCTGCCAGAAGCCTCCAGGAGAGTCCGGGACTGCCCTGCAGGGACACCCCAGCAGCATCTTGCTaGGGAGGTTCTCATTGGGGA | + |
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Preference number: 4 (lower is better) Translates to: SQAARSLQESPGLPCRDTPAASC*GGSHWG Trigger: TCCCCAATGAGAACCTCCCCAGCAAGATGCTGCTGG...GGTGTCCCTGCAGGGCAGTCCCGGACTCTCCTGGAGGCTTCTGGCAGCCTGGGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| CDS-3UTR GCA 90 bp | ATCTCCTTTGAGGTCTTAAGAGGAGCCCTTGCGCGGCCTGCCAAAGACAGCTCACAGCCTGGCGTCGTCTaGGAACCCAGGGGCTGCCCG | + |
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Preference number: 4 (lower is better) Translates to: ISFEVLRGALARPAKDSSQPGVV*EPRGCP Trigger: CGGGCAGCCCCTGGGTTCGCAGACGACGCCAGGCTG...TGAGCTGTCTTTGGCAGGCCGCGCAAGGGCTCCTCTTAAGACCTCAAAGGAGAT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| CDS-3UTR CCA 90 bp | CACATGCCAAGCATTGACAGAACAGTGGCCTTGCTGAGAGCAACAGCCCCAGCCCGCCCCCACTTGTCGTaGCACTACTGTGCCCGCGGC | + |
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Preference number: 4 (lower is better) Translates to: HMPSIDRTVALLRATAPARPHLS*HYCARG Trigger: GCCGCGGGCACAGTAGTGCCACGACAAGTGGGGGCG...GGCTGGGGCTGTTGCTCTCAGCAAGGCCACTGTTCTGTCAATGCTTGGCATGTG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| CDS-3UTR TCA 90 bp | GGCTGCCAGAAGCCTCCAGGAGAGTCCGGGACTGCCCTGCAGGGACACCGTGAGCGTTCAACTCCAGGGTaGCTGAATACTTCAAGGCGT | + |
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Preference number: 4 (lower is better) Translates to: GCQKPPGESGTALQGHRERSTPG*LNTSRR Trigger: ACGCCTTGAAGTATTCAGTCACCCTGGAGTTGAACG...CTCACGGTGTCCCTGCAGGGCAGTCCCGGACTCTCCTGGAGGCTTCTGGCAGCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| CDS-3UTR TCA 90 bp | TCAAACACTGTTAGTCTGGAACGCTGTGGAGACAGCAGGAACTGTCTAAGCTGCTGCCCCAGCCGGGACTaGGGTACCGGGCTGGGTCCC | + |
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Preference number: 4 (lower is better) Translates to: SNTVSLERCGDSRNCLSCCPSRD*GTGLGP Trigger: GGGACCCAGCCCGGTACCTCAGTCCCGGCTGGGGCA...GCAGCTTAGACAGTTCCTGCTGTCTCCACAGCGTTCCAGACTAACAGTGTTTGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| CDS-3UTR TCA 90 bp | GGCTGCCAGAAGCCTCCAGGAGAGTCCGGGACTGCCCTGCAGGGACACCGTGAGATGTTCTCTTTGCTCTaGGATTCAGTGACCATGAAT | + |
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Preference number: 4 (lower is better) Translates to: GCQKPPGESGTALQGHREMFSLL*DSVTMN Trigger: ATTCATGGTCACTGAATCTCAGAGCAAAGAGAACAT...CTCACGGTGTCCCTGCAGGGCAGTCCCGGACTCTCCTGGAGGCTTCTGGCAGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| CDS-3UTR CCA 90 bp | TCAAACACTGTTAGTCTGGAACGCTGTGGAGACAGCAGGAACTGTCTAAGCTGCCACGGATCTGCACCGTaGTCTCGGGCCCAGGCAGAG | + |
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Preference number: 4 (lower is better) Translates to: SNTVSLERCGDSRNCLSCHGSAP*SRAQAE Trigger: CTCTGCCTGGGCCCGAGACCACGGTGCAGATCCGTG...GCAGCTTAGACAGTTCCTGCTGTCTCCACAGCGTTCCAGACTAACAGTGTTTGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| CDS-3UTR CCA 90 bp | TTAAGAGGAGCCCTTGCGCGGCCTGCCAAAGACAGCTCAGTCATTGTAAGAAAATGTTGTCGGGGCCTCTaGGCAGCCTCAGCACCCCCA | + |
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Preference number: 4 (lower is better) Translates to: LRGALARPAKDSSVIVRKCCRGL*AASAPP Trigger: TGGGGGTGCTGAGGCTGCCCAGAGGCCCCGACAACA...TTTTCTTACAATGACTGAGCTGTCTTTGGCAGGCCGCGCAAGGGCTCCTCTTAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| CDS-3UTR CCA 90 bp | ATAAAGCACATCTCCTTTGAGGTCTTAAGAGGAGCCCTTGCGCGGCCTGCCAAACGGCCATGGGAGAGGTaGGATTGCTCTCAGGGTCAG | + |
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Preference number: 4 (lower is better) Translates to: IKHISFEVLRGALARPAKRPWER*DCSQGQ Trigger: CTGACCCTGAGAGCAATCCCACCTCTCCCATGGCCG...TTTGGCAGGCCGCGCAAGGGCTCCTCTTAAGACCTCAAAGGAGATGTGCTTTAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| CDS-3UTR TCA 90 bp | ATCTCCTTTGAGGTCTTAAGAGGAGCCCTTGCGCGGCCTGCCAAAGACAGCTCATCCGCACCGATGAGATaGCGCCAAAAGTCCCAAAGA | + |
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Preference number: 4 (lower is better) Translates to: ISFEVLRGALARPAKDSSSAPMR*RQKSQR Trigger: TCTTTGGGACTTTTGGCGTCATCTCATCGGTGCGGA...TGAGCTGTCTTTGGCAGGCCGCGCAAGGGCTCCTCTTAAGACCTCAAAGGAGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| CDS-3UTR GCA 90 bp | ATCTCCTTTGAGGTCTTAAGAGGAGCCCTTGCGCGGCCTGCCAAAGACAGCTCATCCATCACCTTCTCCTaGACCCTTCCGTTCTTCTGG | + |
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Preference number: 4 (lower is better) Translates to: ISFEVLRGALARPAKDSSSITFS*TLPFFW Trigger: CCAGAAGAACGGAAGGGTGCAGGAGAAGGTGATGGA...TGAGCTGTCTTTGGCAGGCCGCGCAAGGGCTCCTCTTAAGACCTCAAAGGAGAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| CDS-3UTR CCA 90 bp | ATAAAGCACATCTCCTTTGAGGTCTTAAGAGGAGCCCTTGCGCGGCCTGCCAAATGGGGAGGTTCTCATTaGGGAACAGTGGCACAGGGG | + |
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Preference number: 4 (lower is better) Translates to: IKHISFEVLRGALARPAKWGGSH*GTVAQG Trigger: CCCCTGTGCCACTGTTCCCCAATGAGAACCTCCCCA...TTTGGCAGGCCGCGCAAGGGCTCCTCTTAAGACCTCAAAGGAGATGTGCTTTAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| CDS-3UTR CCA 90 bp | GAGAGCAACAGCCCCAGCCAGAAGACGATCCTAAACCCATGGCCCACCAGACAGAGAAAAATATTCTGGTaGCCCGAAGGGCTGAGCTTG | + |
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Preference number: 4 (lower is better) Translates to: ESNSPSQKTILNPWPTRQRKIFW*PEGLSL Trigger: CAAGCTCAGCCCTTCGGGCCACCAGAATATTTTTCT...CTGTCTGGTGGGCCATGGGTTTAGGATCGTCTTCTGGCTGGGGCTGTTGCTCTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| CDS-3UTR TCA 90 bp | GGTCTACATGGATACAAAAGCTTTCTAAGGGGACTGAACTCCATTCTCTGTCATGGCTGTAGCGGCTGCTaGTCCTCCGGATGTCAGGGG | + |
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Preference number: 4 (lower is better) Translates to: GLHGYKSFLRGLNSILCHGCSGC*SSGCQG Trigger: CCCCTGACATCCGGAGGATCAGCAGCCGCTACAGCC...ATGACAGAGAATGGAGTTCAGTCCCCTTAGAAAGCTTTTGTATCCATGTAGACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| CDS-3UTR CCA 90 bp | AAATTAAGAGGTCTACATGGATACAAAAGCTTTCTAAGGGGACTGAACTCCATTTCGGCTCCTCCTCGCTaGCGCTGCCCCAGCCGGGAC | + |
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Preference number: 4 (lower is better) Translates to: KLRGLHGYKSFLRGLNSISAPPR*RCPSRD Trigger: GTCCCGGCTGGGGCAGCGCCAGCGAGGAGGAGCCGA...AATGGAGTTCAGTCCCCTTAGAAAGCTTTTGTATCCATGTAGACCTCTTAATTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| CDS-3UTR TCA 90 bp | ATAAAGCACATCTCCTTTGAGGTCTTAAGAGGAGCCCTTGCGCGGCCTGCCAAAAAGTCCCAAAGAGCTTaGGCAGATGCTCCATCACCT | + |
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Preference number: 4 (lower is better) Translates to: IKHISFEVLRGALARPAKKSQRA*ADAPSP Trigger: AGGTGATGGAGCATCTGCTCAAGCTCTTTGGGACTT...TTTGGCAGGCCGCGCAAGGGCTCCTCTTAAGACCTCAAAGGAGATGTGCTTTAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| CDS-3UTR CCA 90 bp | TTATTTATTCACTTGACAGGGAACAGACACACTCAGTCCTATGAGACACCATGCCCTCAGCCTCCTGGATaGCGACACGGATCTGCACCG | + |
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Preference number: 4 (lower is better) Translates to: LFIHLTGNRHTQSYETPCPQPPG*RHGSAP Trigger: CGGTGCAGATCCGTGTCGCCATCCAGGAGGCTGAGG...GCATGGTGTCTCATAGGACTGAGTGTGTCTGTTCCCTGTCAAGTGAATAAATAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| CDS-3UTR GCA 90 bp | AAATTAAGAGGTCTACATGGATACAAAAGCTTTCTAAGGGGACTGAACTCCATTGTCGTGGCACTACTGTaGCCGCGGCTCGGCTCCTCC | + |
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Preference number: 4 (lower is better) Translates to: KLRGLHGYKSFLRGLNSIVVALL*PRLGSS Trigger: GGAGGAGCCGAGCCGCGGGCACAGTAGTGCCACGAC...AATGGAGTTCAGTCCCCTTAGAAAGCTTTTGTATCCATGTAGACCTCTTAATTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| CDS-3UTR GCA 90 bp | TTAAGAGGAGCCCTTGCGCGGCCTGCCAAAGACAGCTCAGTCATTGTAAGAAAAAAGAGCTTGAGCAGATaGTCCATCACCTTCTCCTGC | + |
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Preference number: 4 (lower is better) Translates to: LRGALARPAKDSSVIVRKKSLSR*SITFSC Trigger: GCAGGAGAAGGTGATGGAGCATCTGCTCAAGCTCTT...TTTTCTTACAATGACTGAGCTGTCTTTGGCAGGCCGCGCAAGGGCTCCTCTTAA 50% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| CDS-3UTR GCA 90 bp | ATCTCCTTTGAGGTCTTAAGAGGAGCCCTTGCGCGGCCTGCCAAAGACAGCTCACGGAAGAATAATCCATaGACTTTCGGAAGATCTCAG | + |
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Preference number: 4 (lower is better) Translates to: ISFEVLRGALARPAKDSSRKNNP*TFGRSQ Trigger: CTGAGATCTTCCGAAAGTGCATGGATTATTCTTCCG...TGAGCTGTCTTTGGCAGGCCGCGCAAGGGCTCCTCTTAAGACCTCAAAGGAGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| CDS-3UTR CCA 90 bp | ATAAAGCACATCTCCTTTGAGGTCTTAAGAGGAGCCCTTGCGCGGCCTGCCAAAGTGGCCTCATCGTCATaGTTCTTATCTTTGAGGGGT | + |
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Preference number: 4 (lower is better) Translates to: IKHISFEVLRGALARPAKVASSS*FLSLRG Trigger: ACCCCTCAAAGATAAGAACCATGACGATGAGGCCAC...TTTGGCAGGCCGCGCAAGGGCTCCTCTTAAGACCTCAAAGGAGATGTGCTTTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| CDS-3UTR TCA 90 bp | TTAAGAGGAGCCCTTGCGCGGCCTGCCAAAGACAGCTCAGTCATTGTAAGAAAACATGGTTCTTATCTTTaGGGGGTTTCTTTTTGGGCG | + |
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Preference number: 4 (lower is better) Translates to: LRGALARPAKDSSVIVRKHGSYL*GVSFWA Trigger: CGCCCAAAAAGAAACCCCTCAAAGATAAGAACCATG...TTTTCTTACAATGACTGAGCTGTCTTTGGCAGGCCGCGCAAGGGCTCCTCTTAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| CDS-3UTR CCA 90 bp | AGGACTTCCAGTGGGTGTTTTATTATTTATTCACTTGACAGGGAACAGACACACCCTCGAACTCCACAATaGCGCACTCTTGGGTCCCCA | + |
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Preference number: 4 (lower is better) Translates to: RTSSGCFIIYSLDREQTHPRTPQ*RTLGSP Trigger: TGGGGACCCAAGAGTGCGCCATTGTGGAGTTCGAGG...GTGTGTCTGTTCCCTGTCAAGTGAATAAATAATAAAACACCCACTGGAAGTCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| CDS-3UTR CCA 90 bp | AAAGGCATCTCTGTGACCTCAGATAAAGGACTTCCAGTGGGTGTTTTATTATTTGGTCAGAGGAGCTGTTaGCGGAAGACTCATCCCCCA | + |
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Preference number: 4 (lower is better) Translates to: KGISVTSDKGLPVGVLLFGQRSC*RKTHPP Trigger: TGGGGGATGAGTCTTCCGCCAACAGCTCCTCTGACC...AAATAATAAAACACCCACTGGAAGTCCTTTATCTGAGGTCACAGAGATGCCTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| CDS-3UTR TCA 90 bp | GGTCTACATGGATACAAAAGCTTTCTAAGGGGACTGAACTCCATTCTCTGTCATTCTCAGGGCTGGTGCTaGAGTTCAGTCTACCTTCTT | + |
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Preference number: 4 (lower is better) Translates to: GLHGYKSFLRGLNSILCHSQGWC*SSVYLL Trigger: AAGAAGGTAGACTGAACTTCAGCACCAGCCCTGAGA...ATGACAGAGAATGGAGTTCAGTCCCCTTAGAAAGCTTTTGTATCCATGTAGACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| CDS-3UTR GCA 90 bp | GGCATCTCTGTGACCTCAGATAAAGGACTTCCAGTGGGTGTTTTATTATTTATTATACTTCAAGGCGTGTaGTGTGGTCCTCCAGTCCCG | + |
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Preference number: 4 (lower is better) Translates to: GISVTSDKGLPVGVLLFIILQGV*CGPPVP Trigger: CGGGACTGGAGGACCACAGCACACGCCTTGAAGTAT...AATAAATAATAAAACACCCACTGGAAGTCCTTTATCTGAGGTCACAGAGATGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| CDS-3UTR CCA 90 bp | GATCCTAAACCCATGGCCCACCAGACAGTTTGTATACCTTACAAATATATAAATCTCATTGGGGAACAGTaGCACAGGGGTGGTCCTCCT | + |
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Preference number: 4 (lower is better) Translates to: DPKPMAHQTVCIPYKYINLIGEQ*HRGGPP Trigger: AGGAGGACCACCCCTGTGCCACTGTTCCCCAATGAG...ATTTATATATTTGTAAGGTATACAAACTGTCTGGTGGGCCATGGGTTTAGGATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| CDS-3UTR TCA 90 bp | AAAGGCATCTCTGTGACCTCAGATAAAGGACTTCCAGTGGGTGTTTTATTATTTCAACTCCAGGGTGACTaGATACTTCAAGGCGTGTGC | + |
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Preference number: 4 (lower is better) Translates to: KGISVTSDKGLPVGVLLFQLQGD*ILQGVC Trigger: GCACACGCCTTGAAGTATTCAGTCACCCTGGAGTTG...AAATAATAAAACACCCACTGGAAGTCCTTTATCTGAGGTCACAGAGATGCCTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| CDS-3UTR GCA 90 bp | GATCCTAAACCCATGGCCCACCAGACAGTTTGTATACCTTACAAATATATAAATAGACCAGCAGCATCTTaGTGGGGAGGTTCTCATTGG | + |
|
Preference number: 4 (lower is better) Translates to: DPKPMAHQTVCIPYKYINRPAAS*WGGSHW Trigger: CCAATGAGAACCTCCCCAGCAAGATGCTGCTGGTCT...ATTTATATATTTGTAAGGTATACAAACTGTCTGGTGGGCCATGGGTTTAGGATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
||
| CDS GCA 90 bp | AGGTCCTCGCGATCGTTCTCGCCCCCACTTGTCGTGGCACTACTGTaGCCGCGGCTCGGCTCCTCCTCGCTGGCGCTGCCCCAGCCGGGA | + |
|
Preference number: 5 (lower is better) Translates to: RSSRSFSPPLVVALL*PRLGSSSLALPQPG Trigger: TCCCGGCTGGGGCAGCGCCAGCGAGGAGGAGCCGAGCCGCGGGCACAGTAGTGCCACGACAAGTGGGGGCGAGAACGATCGCGAGGACCT 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
||
| CDS TCA 90 bp | GGGAGGCATTGGGGCTCAGAAAAATATTCTGGTGGCCCGAAGGGCTaGGCTTGTTGCTGGCCGCGTGCCGCCGGCCGGCCATGGGAGAGG | + |
|
Preference number: 5 (lower is better) Translates to: GRHWGSEKYSGGPKG*ACCWPRAAGRPWER Trigger: CCTCTCCCATGGCCGGCCGGCGGCACGCGGCCAGCAACAAGCTCAGCCCTTCGGGCCACCAGAATATTTTTCTGAGCCCCAATGCCTCCC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
||
| CDS CCA 90 bp | GTCCCCTCGTCCTCCTCCTCCAGATCCTCCAGATCCTCAGCCTCCTaGATGGCGACACGGATCTGCACCGTGGTCTCGGGCCCAGGCAGA | + |
|
Preference number: 5 (lower is better) Translates to: VPSSSSSRSSRSSAS*MATRICTVVSGPGR Trigger: TCTGCCTGGGCCCGAGACCACGGTGCAGATCCGTGTCGCCATCCAGGAGGCTGAGGATCTGGAGGATCTGGAGGAGGAGGACGAGGGGAC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
||
| CDS GCA 90 bp | TCCAGATCCTCCAGATCCTCAGCCTCCTGGATGGCGACACGGATCTaGACCGTGGTCTCGGGCCCAGGCAGAGTCTGTTCGCCGAGCTGG | + |
|
Preference number: 5 (lower is better) Translates to: SRSSRSSASWMATRI*TVVSGPGRVCSPSW Trigger: CCAGCTCGGCGAACAGACTCTGCCTGGGCCCGAGACCACGGTGCAGATCCGTGTCGCCATCCAGGAGGCTGAGGATCTGGAGGATCTGGA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
||
| CDS CCA 90 bp | CCTCGTCCTCCTCCTCCAGATCCTCCAGATCCTCAGCCTCCTGGATaGCGACACGGATCTGCACCGTGGTCTCGGGCCCAGGCAGAGTCT | + |
|
Preference number: 5 (lower is better) Translates to: PRPPPPDPPDPQPPG*RHGSAPWSRAQAES Trigger: AGACTCTGCCTGGGCCCGAGACCACGGTGCAGATCCGTGTCGCCATCCAGGAGGCTGAGGATCTGGAGGATCTGGAGGAGGAGGACGAGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
||
| CDS GCA 90 bp | AAAATATTCTGGTGGCCCGAAGGGCTGAGCTTGTTGCTGGCCGCGTaGCGCCGGCCGGCCATGGGAGAGGTGGGATTGCTCTCAGGGTCA | + |
|
Preference number: 5 (lower is better) Translates to: KIFWWPEGLSLLLAA*RRPAMGEVGLLSGS Trigger: TGACCCTGAGAGCAATCCCACCTCTCCCATGGCCGGCCGGCGGCACGCGGCCAGCAACAAGCTCAGCCCTTCGGGCCACCAGAATATTTT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
||
| CDS-3UTR CAA 90 bp | GGGAACATGTCCCCGTTGGGTTCTGTCTTGAAAAGGCATCTCTGTGACCTCAGAGAAGGGCTGAGCTTGTaGCTGGCCGCGTGCCGCCGG | + |
|
Preference number: 5 (lower is better) Translates to: GNMSPLGSVLKRHLCDLREGLSL*LAACRR Trigger: CCGGCGGCACGCGGCCAGCAACAAGCTCAGCCCTTC...TCTGAGGTCACAGAGATGCCTTTTCAAGACAGAACCCAACGGGGACATGTTCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
||
| CDS TCA 90 bp | GGTCCTCCTAACCTTCCGGTGGTCCTCGTTCAACTCCAGGGTGACTaGATACTTCAAGGCGTGTGCTGTGGTCCTCCAGTCCCGGGTGAG | + |
|
Preference number: 5 (lower is better) Translates to: GPPNLPVVLVQLQGD*ILQGVCCGPPVPGE Trigger: CTCACCCGGGACTGGAGGACCACAGCACACGCCTTGAAGTATTCAGTCACCCTGGAGTTGAACGAGGACCACCGGAAGGTTAGGAGGACC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
||
| CDS CCA 90 bp | TTGAGCAGATGCTCCATCACCTTCTCCTGCACCCTTCCGTTCTTCTaGGGTGTGGCCAGGGCCCAGAGCTTAGGGGACAGGTGTAGGTCA | + |
|
Preference number: 5 (lower is better) Translates to: LSRCSITFSCTLPFF*GVARAQSLGDRCRS Trigger: TGACCTACACCTGTCCCCTAAGCTCTGGGCCCTGGCCACACCCCAGAAGAACGGAAGGGTGCAGGAGAAGGTGATGGAGCATCTGCTCAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
||
| CDS-3UTR CAA 90 bp | CACATGCCAAGCATTGACAGAACAGTGGCCTTGCTGAGAGCAACAGCCCCAGCCTTTCTGGAGACACCCTaGCGCTGTGCCAAGGGGCTG | + |
|
Preference number: 5 (lower is better) Translates to: HMPSIDRTVALLRATAPAFLETP*RCAKGL Trigger: CAGCCCCTTGGCACAGCGCAAGGGTGTCTCCAGAAA...GGCTGGGGCTGTTGCTCTCAGCAAGGCCACTGTTCTGTCAATGCTTGGCATGTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
||
| CDS TCA 90 bp | TCTCAGCCTGGCGTCGTCTGCGAACCCAGGGGCTGCCCGAGGGAGTaGTGCTGCTGTCGGAAGAATAATCCATGCACTTTCGGAAGATCT | + |
|
Preference number: 5 (lower is better) Translates to: SQPGVVCEPRGCPRE*CCCRKNNPCTFGRS Trigger: AGATCTTCCGAAAGTGCATGGATTATTCTTCCGACAGCAGCATCACTCCCTCGGGCAGCCCCTGGGTTCGCAGACGACGCCAGGCTGAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
||
| CDS CCA 90 bp | CGGCCATGGGAGAGGTGGGATTGCTCTCAGGGTCAGAGGAGCTGTTaGCGGAAGACTCATCCCCCATGTACTGAAGTTCCTCCACTCTCT | + |
|
Preference number: 5 (lower is better) Translates to: RPWERWDCSQGQRSC*RKTHPPCTEVPPLS Trigger: AGAGAGTGGAGGAACTTCAGTACATGGGGGATGAGTCTTCCGCCAACAGCTCCTCTGACCCTGAGAGCAATCCCACCTCTCCCATGGCCG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
||
| CDS-3UTR CAA 90 bp | TCCCAGGCTGCCAGAAGCCTCCAGGAGAGTCCGGGACTGCCCTGCAGGGACACCTCATGGTTCTTATCTTaGAGGGGTTTCTTTTTGGGC | + |
|
Preference number: 5 (lower is better) Translates to: SQAARSLQESPGLPCRDTSWFLS*RGFFLG Trigger: GCCCAAAAAGAAACCCCTCAAAGATAAGAACCATGA...GGTGTCCCTGCAGGGCAGTCCCGGACTCTCCTGGAGGCTTCTGGCAGCCTGGGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
||
| CDS GCA 90 bp | CCAAAAGTCCCAAAGAGCTTGAGCAGATGCTCCATCACCTTCTCCTaGACCCTTCCGTTCTTCTGGGGTGTGGCCAGGGCCCAGAGCTTA | + |
|
Preference number: 5 (lower is better) Translates to: PKVPKSLSRCSITFS*TLPFFWGVARAQSL Trigger: TAAGCTCTGGGCCCTGGCCACACCCCAGAAGAACGGAAGGGTGCAGGAGAAGGTGATGGAGCATCTGCTCAAGCTCTTTGGGACTTTTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
||
| CDS-3UTR CAA 90 bp | TTAAGAGGAGCCCTTGCGCGGCCTGCCAAAGACAGCTCAGTCATTGTAAGAAAAGGCTGCTCCATGGGCTaGAGCACGGGGAGGCATTGG | + |
|
Preference number: 5 (lower is better) Translates to: LRGALARPAKDSSVIVRKGCSMG*STGRHW Trigger: CCAATGCCTCCCCGTGCTCAAGCCCATGGAGCAGCC...TTTTCTTACAATGACTGAGCTGTCTTTGGCAGGCCGCGCAAGGGCTCCTCTTAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
||
| CDS GCA 90 bp | CGCACCGATGAGATGACGCCAAAAGTCCCAAAGAGCTTGAGCAGATaGTCCATCACCTTCTCCTGCACCCTTCCGTTCTTCTGGGGTGTG | + |
|
Preference number: 5 (lower is better) Translates to: RTDEMTPKVPKSLSR*SITFSCTLPFFWGV Trigger: CACACCCCAGAAGAACGGAAGGGTGCAGGAGAAGGTGATGGAGCATCTGCTCAAGCTCTTTGGGACTTTTGGCGTCATCTCATCGGTGCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
||
| CDS CCA 90 bp | TCATTGGGGAACAGTGGCACAGGGGTGGTCCTCCTAACCTTCCGGTaGTCCTCGTTCAACTCCAGGGTGACTGAATACTTCAAGGCGTGT | + |
|
Preference number: 5 (lower is better) Translates to: SLGNSGTGVVLLTFR*SSFNSRVTEYFKAC Trigger: ACACGCCTTGAAGTATTCAGTCACCCTGGAGTTGAACGAGGACCACCGGAAGGTTAGGAGGACCACCCCTGTGCCACTGTTCCCCAATGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| CDS-3UTR CAA 90 bp | CACATGCCAAGCATTGACAGAACAGTGGCCTTGCTGAGAGCAACAGCCCCAGCCAGGTGTTTCACCTTCTaGAAGGAGGTGAGCAGCTTG | + |
|
Preference number: 5 (lower is better) Translates to: HMPSIDRTVALLRATAPARCFTF*KEVSSL Trigger: CAAGCTGCTCACCTCCTTCAAGAAGGTGAAACACCT...GGCTGGGGCTGTTGCTCTCAGCAAGGCCACTGTTCTGTCAATGCTTGGCATGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
||
| CDS TCA 90 bp | TCAGGGTCAGAGGAGCTGTTGGCGGAAGACTCATCCCCCATGTACTaGAGTTCCTCCACTCTCTTGTTCAGGGATCTGCTTAGGTGGGTA | + |
|
Preference number: 5 (lower is better) Translates to: SGSEELLAEDSSPMY*SSSTLLFRDLLRWV Trigger: TACCCACCTAAGCAGATCCCTGAACAAGAGAGTGGAGGAACTTCAGTACATGGGGGATGAGTCTTCCGCCAACAGCTCCTCTGACCCTGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
||
| CDS-3UTR CAA 90 bp | GGCATCTCTGTGACCTCAGATAAAGGACTTCCAGTGGGTGTTTTATTATTTATTCCCGAAGGGCTGAGCTaGTTGCTGGCCGCGTGCCGC | + |
|
Preference number: 5 (lower is better) Translates to: GISVTSDKGLPVGVLLFIPEGLS*LLAACR Trigger: GCGGCACGCGGCCAGCAACAAGCTCAGCCCTTCGGG...AATAAATAATAAAACACCCACTGGAAGTCCTTTATCTGAGGTCACAGAGATGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
||
| CDS GCA 90 bp | CATCCCCCATGTACTGAAGTTCCTCCACTCTCTTGTTCAGGGATCTaGTTAGGTGGGTACCTGCTGTGGCCTCATCGTCATGGTTCTTAT | + |
|
Preference number: 5 (lower is better) Translates to: HPPCTEVPPLSCSGI*LGGYLLWPHRHGSY Trigger: ATAAGAACCATGACGATGAGGCCACAGCAGGTACCCACCTAAGCAGATCCCTGAACAAGAGAGTGGAGGAACTTCAGTACATGGGGGATG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| CDS CCA 90 bp | TTCAGGGATCTGCTTAGGTGGGTACCTGCTGTGGCCTCATCGTCATaGTTCTTATCTTTGAGGGGTTTCTTTTTGGGCGGCTTCATCCCA | + |
|
Preference number: 5 (lower is better) Translates to: FRDLLRWVPAVASSS*FLSLRGFFLGGFIP Trigger: TGGGATGAAGCCGCCCAAAAAGAAACCCCTCAAAGATAAGAACCATGACGATGAGGCCACAGCAGGTACCCACCTAAGCAGATCCCTGAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
||
| CDS TCA 90 bp | GGCGGCTTCATCCCAATCAGAACAGCCTTCATGTTCTCTTTGCTCTaGGATTCAGTGACCATGAATTCATGGGCTTTAATGGCCGCGTCC | + |
|
Preference number: 5 (lower is better) Translates to: GGFIPIRTAFMFSLL*DSVTMNSWALMAAS Trigger: GGACGCGGCCATTAAAGCCCATGAATTCATGGTCACTGAATCTCAGAGCAAAGAGAACATGAAGGCTGTTCTGATTGGGATGAAGCCGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| CDS TCA 90 bp | TTAGGTGGGTACCTGCTGTGGCCTCATCGTCATGGTTCTTATCTTTaGGGGGTTTCTTTTTGGGCGGCTTCATCCCAATCAGAACAGCCT | + |
|
Preference number: 5 (lower is better) Translates to: LGGYLLWPHRHGSYL*GVSFWAASSQSEQP Trigger: AGGCTGTTCTGATTGGGATGAAGCCGCCCAAAAAGAAACCCCTCAAAGATAAGAACCATGACGATGAGGCCACAGCAGGTACCCACCTAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| CDS TCA 90 bp | CGGAAGAATAATCCATGCACTTTCGGAAGATCTCAGGGCTGGTGCTaGAGTTCAGTCTACCTTCTTCAGCCAGCGGGGATTTTCTGGAGA | + |
|
Preference number: 5 (lower is better) Translates to: RKNNPCTFGRSQGWC*SSVYLLQPAGIFWR Trigger: TCTCCAGAAAATCCCCGCTGGCTGAAGAAGGTAGACTGAACTTCAGCACCAGCCCTGAGATCTTCCGAAAGTGCATGGATTATTCTTCCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| CDS-3UTR CAA 90 bp | GATCCTAAACCCATGGCCCACCAGACAGTTTGTATACCTTACAAATATATAAATTGGAAGCCCCTGGTGTaGTCGGGGCCTCTGGGCAGC | + |
|
Preference number: 5 (lower is better) Translates to: DPKPMAHQTVCIPYKYINWKPLV*SGPLGS Trigger: GCTGCCCAGAGGCCCCGACAACACCAGGGGCTTCCA...ATTTATATATTTGTAAGGTATACAAACTGTCTGGTGGGCCATGGGTTTAGGATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
||
| CDS-3UTR CAA 90 bp | AAATTAAGAGGTCTACATGGATACAAAAGCTTTCTAAGGGGACTGAACTCCATTCACAATGGCGCACTCTaGGGTCCCCACCTGGCTGTA | + |
|
Preference number: 5 (lower is better) Translates to: KLRGLHGYKSFLRGLNSIHNGAL*GPHLAV Trigger: TACAGCCAGGTGGGGACCCAAGAGTGCGCCATTGTG...AATGGAGTTCAGTCCCCTTAGAAAGCTTTTGTATCCATGTAGACCTCTTAATTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| CDS GCA 72 bp | CGATCGTTCTCGCCCCCACTTGTCGTGGCACTACTGTaGCCGCGGCTCGGCTCCTCCTCGCTGGCGCTGCCC | + |
|
Preference number: 6 (lower is better) Translates to: RSFSPPLVVALL*PRLGSSSLALP Trigger: GGGCAGCGCCAGCGAGGAGGAGCCGAGCCGCGGGCACAGTAGTGCCACGACAAGTGGGGGCGAGAACGATCG 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| CDS GCA 72 bp | TGGTGGCCCGAAGGGCTGAGCTTGTTGCTGGCCGCGTaGCGCCGGCCGGCCATGGGAGAGGTGGGATTGCTC | + |
|
Preference number: 6 (lower is better) Translates to: WWPEGLSLLLAA*RRPAMGEVGLL Trigger: GAGCAATCCCACCTCTCCCATGGCCGGCCGGCGGCACGCGGCCAGCAACAAGCTCAGCCCTTCGGGCCACCA 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| CDS CCA 72 bp | CCAGGTCCTCGCGATCGTTCTCGCCCCCACTTGTCGTaGCACTACTGTGCCCGCGGCTCGGCTCCTCCTCGC | + |
|
Preference number: 6 (lower is better) Translates to: PGPRDRSRPHLS*HYCARGSAPPR Trigger: GCGAGGAGGAGCCGAGCCGCGGGCACAGTAGTGCCACGACAAGTGGGGGCGAGAACGATCGCGAGGACCTGG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| CDS CAA 72 bp | CAGGCTCCAGGTCCTCGCGATCGTTCTCGCCCCCACTaGTCGTGGCACTACTGTGCCCGCGGCTCGGCTCCT | + |
|
Preference number: 6 (lower is better) Translates to: QAPGPRDRSRPH*SWHYCARGSAP Trigger: AGGAGCCGAGCCGCGGGCACAGTAGTGCCACGACAAGTGGGGGCGAGAACGATCGCGAGGACCTGGAGCCTG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
||
| CDS CAA 90 bp | TTGTTGCTGGCCGCGTGCCGCCGGCCGGCCATGGGAGAGGTGGGATaGCTCTCAGGGTCAGAGGAGCTGTTGGCGGAAGACTCATCCCCC | + |
|
Preference number: 6 (lower is better) Translates to: LLLAACRRPAMGEVG*LSGSEELLAEDSSP Trigger: GGGGGATGAGTCTTCCGCCAACAGCTCCTCTGACCCTGAGAGCAATCCCACCTCTCCCATGGCCGGCCGGCGGCACGCGGCCAGCAACAA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
||
| CDS CCA 72 bp | CCTCAGCCTCCTGGATGGCGACACGGATCTGCACCGTaGTCTCGGGCCCAGGCAGAGTCTGTTCGCCGAGCT | + |
|
Preference number: 6 (lower is better) Translates to: PQPPGWRHGSAP*SRAQAESVRRA Trigger: AGCTCGGCGAACAGACTCTGCCTGGGCCCGAGACCACGGTGCAGATCCGTGTCGCCATCCAGGAGGCTGAGG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| CDS CCA 72 bp | AGGCTCTGCCTCTCTCATGTCCACCGTGGAAGCCCCTaGTGTTGTCGGGGCCTCTGGGCAGCCTCAGCACCC | + |
|
Preference number: 6 (lower is better) Translates to: RLCLSHVHRGSP*CCRGLWAASAP Trigger: GGGTGCTGAGGCTGCCCAGAGGCCCCGACAACACCAGGGGCTTCCACGGTGGACATGAGAGAGGCAGAGCCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| CDS TCA 72 bp | TGGGGCTCAGAAAAATATTCTGGTGGCCCGAAGGGCTaGGCTTGTTGCTGGCCGCGTGCCGCCGGCCGGCCA | + |
|
Preference number: 6 (lower is better) Translates to: WGSEKYSGGPKG*ACCWPRAAGRP Trigger: TGGCCGGCCGGCGGCACGCGGCCAGCAACAAGCTCAGCCCTTCGGGCCACCAGAATATTTTTCTGAGCCCCA 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
||
| CDS GCA 72 bp | TCCAGATCCTCAGCCTCCTGGATGGCGACACGGATCTaGACCGTGGTCTCGGGCCCAGGCAGAGTCTGTTCG | + |
|
Preference number: 6 (lower is better) Translates to: SRSSASWMATRI*TVVSGPGRVCS Trigger: CGAACAGACTCTGCCTGGGCCCGAGACCACGGTGCAGATCCGTGTCGCCATCCAGGAGGCTGAGGATCTGGA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
||
| CDS CCA 72 bp | TCCTCCTCCTCCAGATCCTCCAGATCCTCAGCCTCCTaGATGGCGACACGGATCTGCACCGTGGTCTCGGGC | + |
|
Preference number: 6 (lower is better) Translates to: SSSSRSSRSSAS*MATRICTVVSG Trigger: GCCCGAGACCACGGTGCAGATCCGTGTCGCCATCCAGGAGGCTGAGGATCTGGAGGATCTGGAGGAGGAGGA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
||
| CDS CAA 72 bp | AGAAAAATATTCTGGTGGCCCGAAGGGCTGAGCTTGTaGCTGGCCGCGTGCCGCCGGCCGGCCATGGGAGAG | + |
|
Preference number: 6 (lower is better) Translates to: RKIFWWPEGLSL*LAACRRPAMGE Trigger: CTCTCCCATGGCCGGCCGGCGGCACGCGGCCAGCAACAAGCTCAGCCCTTCGGGCCACCAGAATATTTTTCT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
||
| CDS CAA 90 bp | TTGGGGCTCAGAAAAATATTCTGGTGGCCCGAAGGGCTGAGCTTGTaGCTGGCCGCGTGCCGCCGGCCGGCCATGGGAGAGGTGGGATTG | + |
|
Preference number: 6 (lower is better) Translates to: LGLRKIFWWPEGLSL*LAACRRPAMGEVGL Trigger: CAATCCCACCTCTCCCATGGCCGGCCGGCGGCACGCGGCCAGCAACAAGCTCAGCCCTTCGGGCCACCAGAATATTTTTCTGAGCCCCAA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
||
| CDS CCA 72 bp | TGCTCCATCACCTTCTCCTGCACCCTTCCGTTCTTCTaGGGTGTGGCCAGGGCCCAGAGCTTAGGGGACAGG | + |
|
Preference number: 6 (lower is better) Translates to: CSITFSCTLPFF*GVARAQSLGDR Trigger: CCTGTCCCCTAAGCTCTGGGCCCTGGCCACACCCCAGAAGAACGGAAGGGTGCAGGAGAAGGTGATGGAGCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
||
| CDS CAA 90 bp | TTTAATGGCCGCGTCCACCTCCTCGAACTCCACAATGGCGCACTCTaGGGTCCCCACCTGGCTGTAGCGGCTGCTGATCCTCCGGATGTC | + |
|
Preference number: 6 (lower is better) Translates to: FNGRVHLLELHNGAL*GPHLAVAAADPPDV Trigger: GACATCCGGAGGATCAGCAGCCGCTACAGCCAGGTGGGGACCCAAGAGTGCGCCATTGTGGAGTTCGAGGAGGTGGACGCGGCCATTAAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
||
| CDS GCA 72 bp | CCAAAGAGCTTGAGCAGATGCTCCATCACCTTCTCCTaGACCCTTCCGTTCTTCTGGGGTGTGGCCAGGGCC | + |
|
Preference number: 6 (lower is better) Translates to: PKSLSRCSITFS*TLPFFWGVARA Trigger: GGCCCTGGCCACACCCCAGAAGAACGGAAGGGTGCAGGAGAAGGTGATGGAGCATCTGCTCAAGCTCTTTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
||
| CDS CCA 72 bp | GGGACAGGTGTAGGTCATAGACCAGCAGCATCTTGCTaGGGAGGTTCTCATTGGGGAACAGTGGCACAGGGG | + |
|
Preference number: 6 (lower is better) Translates to: GTGVGHRPAASC*GGSHWGTVAQG Trigger: CCCCTGTGCCACTGTTCCCCAATGAGAACCTCCCCAGCAAGATGCTGCTGGTCTATGACCTACACCTGTCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
||
| CDS TCA 72 bp | AACCTTCCGGTGGTCCTCGTTCAACTCCAGGGTGACTaGATACTTCAAGGCGTGTGCTGTGGTCCTCCAGTC | + |
|
Preference number: 6 (lower is better) Translates to: NLPVVLVQLQGD*ILQGVCCGPPV Trigger: GACTGGAGGACCACAGCACACGCCTTGAAGTATTCAGTCACCCTGGAGTTGAACGAGGACCACCGGAAGGTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
||
| CDS CCA 72 bp | AACAGTGGCACAGGGGTGGTCCTCCTAACCTTCCGGTaGTCCTCGTTCAACTCCAGGGTGACTGAATACTTC | + |
|
Preference number: 6 (lower is better) Translates to: NSGTGVVLLTFR*SSFNSRVTEYF Trigger: GAAGTATTCAGTCACCCTGGAGTTGAACGAGGACCACCGGAAGGTTAGGAGGACCACCCCTGTGCCACTGTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
||
| CDS TCA 72 bp | GAGGAGCTGTTGGCGGAAGACTCATCCCCCATGTACTaGAGTTCCTCCACTCTCTTGTTCAGGGATCTGCTT | + |
|
Preference number: 6 (lower is better) Translates to: EELLAEDSSPMY*SSSTLLFRDLL Trigger: AAGCAGATCCCTGAACAAGAGAGTGGAGGAACTTCAGTACATGGGGGATGAGTCTTCCGCCAACAGCTCCTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
||
| CDS GCA 72 bp | GAGATGACGCCAAAAGTCCCAAAGAGCTTGAGCAGATaGTCCATCACCTTCTCCTGCACCCTTCCGTTCTTC | + |
|
Preference number: 6 (lower is better) Translates to: EMTPKVPKSLSR*SITFSCTLPFF Trigger: GAAGAACGGAAGGGTGCAGGAGAAGGTGATGGAGCATCTGCTCAAGCTCTTTGGGACTTTTGGCGTCATCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
||
| CDS CAA 90 bp | CTTAGGTGGGTACCTGCTGTGGCCTCATCGTCATGGTTCTTATCTTaGAGGGGTTTCTTTTTGGGCGGCTTCATCCCAATCAGAACAGCC | + |
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Preference number: 6 (lower is better) Translates to: LRWVPAVASSSWFLS*RGFFLGGFIPIRTA Trigger: GGCTGTTCTGATTGGGATGAAGCCGCCCAAAAAGAAACCCCTCAAAGATAAGAACCATGACGATGAGGCCACAGCAGGTACCCACCTAAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| CDS TCA 72 bp | AATCCATGCACTTTCGGAAGATCTCAGGGCTGGTGCTaGAGTTCAGTCTACCTTCTTCAGCCAGCGGGGATT | + |
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Preference number: 6 (lower is better) Translates to: NPCTFGRSQGWC*SSVYLLQPAGI Trigger: AATCCCCGCTGGCTGAAGAAGGTAGACTGAACTTCAGCACCAGCCCTGAGATCTTCCGAAAGTGCATGGATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| CDS GCA 72 bp | TGTACTGAAGTTCCTCCACTCTCTTGTTCAGGGATCTaGTTAGGTGGGTACCTGCTGTGGCCTCATCGTCAT | + |
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Preference number: 6 (lower is better) Translates to: CTEVPPLSCSGI*LGGYLLWPHRH Trigger: ATGACGATGAGGCCACAGCAGGTACCCACCTAAGCAGATCCCTGAACAAGAGAGTGGAGGAACTTCAGTACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| CDS CAA 72 bp | GTACCTGCTGTGGCCTCATCGTCATGGTTCTTATCTTaGAGGGGTTTCTTTTTGGGCGGCTTCATCCCAATC | + |
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Preference number: 6 (lower is better) Translates to: VPAVASSSWFLS*RGFFLGGFIPI Trigger: GATTGGGATGAAGCCGCCCAAAAAGAAACCCCTCAAAGATAAGAACCATGACGATGAGGCCACAGCAGGTAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| CDS TCA 72 bp | TACCTGCTGTGGCCTCATCGTCATGGTTCTTATCTTTaGGGGGTTTCTTTTTGGGCGGCTTCATCCCAATCA | + |
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Preference number: 6 (lower is better) Translates to: YLLWPHRHGSYL*GVSFWAASSQS Trigger: TGATTGGGATGAAGCCGCCCAAAAAGAAACCCCTCAAAGATAAGAACCATGACGATGAGGCCACAGCAGGTA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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| CDS CAA 90 bp | GCTGTGGCCTCATCGTCATGGTTCTTATCTTTGAGGGGTTTCTTTTaGGGCGGCTTCATCCCAATCAGAACAGCCTTCATGTTCTCTTTG | + |
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Preference number: 6 (lower is better) Translates to: AVASSSWFLSLRGFF*GGFIPIRTAFMFSL Trigger: CAAAGAGAACATGAAGGCTGTTCTGATTGGGATGAAGCCGCCCAAAAAGAAACCCCTCAAAGATAAGAACCATGACGATGAGGCCACAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038407.6 |
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