RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LARP1B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025762

Ensembl transcript IDs: ENSMUST00000026862.9, ENSMUST00000048490.13, ENSMUST00000099121.10, ENSMUST00000191805.7, ENSMUST00000191872.6

Found 100 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AGGCTGGCCCAACCTTCTCCACAAGGGGGTGGGCGTAGACATTCTTaGACAGAAGACAGTATGGTCACTCTCACTTCTGCAGCACGATTT +
Preference number: 1 (lower is better)
Translates to: RLAQPSPQGGGRRHS*TEDSMVTLTSAARF
Trigger: AAATCGTGCTGCAGAAGTGAGAGTGACCATACTGTCTTCTGTGCAAGAATGTCTACGCCCACCCCCTTGTGGAGAAGGTTGGGCCAGCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000048490.13
ENSMUST00000191805.7
ENSMUST00000191872.6
3UTR GCA 90 bp CTCTGGTCTGTCTCACATCATTATCGTAAAGGTGGTTTTCTCCACTaGAGGCTGGCCCAACCTTCTCCACAAGGGGGTGGGCGTAGACAT +
Preference number: 1 (lower is better)
Translates to: LWSVSHHYRKGGFLH*RLAQPSPQGGGRRH
Trigger: ATGTCTACGCCCACCCCCTTGTGGAGAAGGTTGGGCCAGCCTGCAGTGGAGAAAACCACCTTTACGATAATGATGTGAGACAGACCAGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000048490.13
ENSMUST00000191805.7
ENSMUST00000191872.6
3UTR CCA 90 bp CTGTCTCACATCATTATCGTAAAGGTGGTTTTCTCCACTGCAGGCTaGCCCAACCTTCTCCACAAGGGGGTGGGCGTAGACATTCTTGCA +
Preference number: 1 (lower is better)
Translates to: LSHIIIVKVVFSTAG*PNLLHKGVGVDILA
Trigger: TGCAAGAATGTCTACGCCCACCCCCTTGTGGAGAAGGTTGGGCCAGCCTGCAGTGGAGAAAACCACCTTTACGATAATGATGTGAGACAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000048490.13
ENSMUST00000191805.7
ENSMUST00000191872.6
3UTR GCA 90 bp GGAAAAGCAGTGTCCAGACCCACAGGCCTCACTACAGCTACAGTCTaGTATGCATTCCTTTGTTGTGTGTGTGTGTGTGTGTGTGTGTGT +
Preference number: 1 (lower is better)
Translates to: GKAVSRPTGLTTATV*YAFLCCVCVCVCVC
Trigger: ACACACACACACACACACACACACACAACAAAGGAATGCATAGCAGACTGTAGCTGTAGTGAGGCCTGTGGGTCTGGACACTGCTTTTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026862.9
3UTR CCA 90 bp CTCCACAAGGGGGTGGGCGTAGACATTCTTGCACAGAAGACAGTATaGTCACTCTCACTTCTGCAGCACGATTTGCTCTCATATTTACAT +
Preference number: 1 (lower is better)
Translates to: LHKGVGVDILAQKTV*SLSLLQHDLLSYLH
Trigger: ATGTAAATATGAGAGCAAATCGTGCTGCAGAAGTGAGAGTGACCATACTGTCTTCTGTGCAAGAATGTCTACGCCCACCCCCTTGTGGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000048490.13
ENSMUST00000191805.7
ENSMUST00000191872.6
3UTR TCA 90 bp TATGCATTCCTTTGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATaGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA +
Preference number: 1 (lower is better)
Translates to: YAFLCCVCVCVCVCV*ERERERERERERER
Trigger: TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATACACACACACACACACACACACACACACAACAAAGGAATGCATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026862.9
3UTR GCA 90 bp TTGCACAGAAGACAGTATGGTCACTCTCACTTCTGCAGCACGATTTaGTCTCATATTTACATGGTATTTCAGGGAGTCACCTACTCCACT +
Preference number: 1 (lower is better)
Translates to: LHRRQYGHSHFCSTI*SHIYMVFQGVTYST
Trigger: AGTGGAGTAGGTGACTCCCTGAAATACCATGTAAATATGAGAGCAAATCGTGCTGCAGAAGTGAGAGTGACCATACTGTCTTCTGTGCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048490.13
ENSMUST00000191805.7
ENSMUST00000191872.6
3UTR-3UTR GCA 90 bp TATCGTAAAGGTGGTTTTCTCCACTGCAGGCTGGCCCAACCTTCTCCACAAGGGGGGCGTAGACATTCTTaGACAGAAGACAGTATGGTC +
Preference number: 2 (lower is better)
Translates to: YRKGGFLHCRLAQPSPQGGRRHS*TEDSMV
Trigger: GACCATACTGTCTTCTGTGCAAGAATGTCTACGCCC...CCCTTGTGGAGAAGGTTGGGCCAGCCTGCAGTGGAGAAAACCACCTTTACGATA
51% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000048490.13
ENSMUST00000191805.7
ENSMUST00000191872.6
3UTR-3UTR CCA 90 bp AAAGGAGAGGCTCCTACAGTAACCGCAGTCCTCTGGTCTGTCTCACATCATTATTTCTCCACTGCAGGCTaGCCCAACCTTCTCCACAAG +
Preference number: 2 (lower is better)
Translates to: KGEAPTVTAVLWSVSHHYFSTAG*PNLLHK
Trigger: CTTGTGGAGAAGGTTGGGCCAGCCTGCAGTGGAGAA...ATAATGATGTGAGACAGACCAGAGGACTGCGGTTACTGTAGGAGCCTCTCCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048490.13
ENSMUST00000191805.7
ENSMUST00000191872.6
3UTR CAA 90 bp ACCCACAGGCCTCACTACAGCTACAGTCTGCTATGCATTCCTTTGTaGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGAGAGAGAGAGAG +
Preference number: 2 (lower is better)
Translates to: THRPHYSYSLLCIPL*CVCVCVCVCMRERE
Trigger: CTCTCTCTCTCTCATACACACACACACACACACACACACACACAACAAAGGAATGCATAGCAGACTGTAGCTGTAGTGAGGCCTGTGGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026862.9
3UTR-3UTR TCA 90 bp ACTTGGGAAAAGCAGTGTCCAGACCCACAGGCCTCACTACAGCTACAGTCTGCTCCTTCCCTTGCTTTTTaGTATGTTCAAACATGGATT +
Preference number: 2 (lower is better)
Translates to: TWEKQCPDPQASLQLQSAPSLAF*YVQTWI
Trigger: AATCCATGTTTGAACATATCAAAAAGCAAGGGAAGG...AGCAGACTGTAGCTGTAGTGAGGCCTGTGGGTCTGGACACTGCTTTTCCCAAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026862.9
3UTR CAA 90 bp CTTGCACAGAAGACAGTATGGTCACTCTCACTTCTGCAGCACGATTaGCTCTCATATTTACATGGTATTTCAGGGAGTCACCTACTCCAC +
Preference number: 2 (lower is better)
Translates to: LAQKTVWSLSLLQHD*LSYLHGISGSHLLH
Trigger: GTGGAGTAGGTGACTCCCTGAAATACCATGTAAATATGAGAGCAAATCGTGCTGCAGAAGTGAGAGTGACCATACTGTCTTCTGTGCAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048490.13
ENSMUST00000191805.7
ENSMUST00000191872.6
3UTR CAA 90 bp CACATACACATTGAAGCCAATGTTGATTTCAAGAATACACGACGTTaGTGTACGTATCTACTTCCCTGGTACTTCAACCCTAGAGGCCAA +
Preference number: 2 (lower is better)
Translates to: HIHIEANVDFKNTRR*CTYLLPWYFNPRGQ
Trigger: TTGGCCTCTAGGGTTGAAGTACCAGGGAAGTAGATACGTACACAAACGTCGTGTATTCTTGAAATCAACATTGGCTTCAATGTGTATGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026862.9
ENSMUST00000099121.10
3UTR-3UTR CCA 90 bp AGAAGATCTATCCACATACACATTGAAGCCAATGTTGATTTCAAGAATACACGAACGTATCTACTTCCCTaGTACTTCAACCCTAGAGGC +
Preference number: 2 (lower is better)
Translates to: RRSIHIHIEANVDFKNTRTYLLP*YFNPRG
Trigger: GCCTCTAGGGTTGAAGTACCAGGGAAGTAGATACGT...TCGTGTATTCTTGAAATCAACATTGGCTTCAATGTGTATGTGGATAGATCTTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026862.9
ENSMUST00000099121.10
3UTR CAA 90 bp TTCATCTCCATTTCTGAAGTTAAGACCTATATACATAACCTTCCCTaGCTTTTTGATATGTTCAAACATGGATTGACAGGGAGACAACTG +
Preference number: 2 (lower is better)
Translates to: FISISEVKTYIHNLP*LFDMFKHGLTGRQL
Trigger: CAGTTGTCTCCCTGTCAATCCATGTTTGAACATATCAAAAAGCAAGGGAAGGTTATGTATATAGGTCTTAACTTCAGAAATGGAGATGAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026862.9
3UTR CCA 72 bp TCCACATCTACACAGCAGCTGCAACTGCCTCTGACTTaGGAAAAGCAGTGTCCAGACCCACAGGCCTCACTA +
Preference number: 3 (lower is better)
Translates to: STSTQQLQLPLT*EKQCPDPQASL
Trigger: TAGTGAGGCCTGTGGGTCTGGACACTGCTTTTCCCAAGTCAGAGGCAGTTGCAGCTGCTGTGTAGATGTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026862.9
3UTR CCA 72 bp ATCATTATCGTAAAGGTGGTTTTCTCCACTGCAGGCTaGCCCAACCTTCTCCACAAGGGGGTGGGCGTAGAC +
Preference number: 3 (lower is better)
Translates to: IIIVKVVFSTAG*PNLLHKGVGVD
Trigger: GTCTACGCCCACCCCCTTGTGGAGAAGGTTGGGCCAGCCTGCAGTGGAGAAAACCACCTTTACGATAATGAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000048490.13
ENSMUST00000191805.7
ENSMUST00000191872.6
3UTR TCA 72 bp AAAGTTCCACATCTACACAGCAGCTGCAACTGCCTCTaGCTTGGGAAAAGCAGTGTCCAGACCCACAGGCCT +
Preference number: 3 (lower is better)
Translates to: KVPHLHSSCNCL*LGKSSVQTHRP
Trigger: AGGCCTGTGGGTCTGGACACTGCTTTTCCCAAGTCAGAGGCAGTTGCAGCTGCTGTGTAGATGTGGAACTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026862.9
3UTR GCA 72 bp CAACCTTCTCCACAAGGGGGTGGGCGTAGACATTCTTaGACAGAAGACAGTATGGTCACTCTCACTTCTGCA +
Preference number: 3 (lower is better)
Translates to: QPSPQGGGRRHS*TEDSMVTLTSA
Trigger: TGCAGAAGTGAGAGTGACCATACTGTCTTCTGTGCAAGAATGTCTACGCCCACCCCCTTGTGGAGAAGGTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000048490.13
ENSMUST00000191805.7
ENSMUST00000191872.6
3UTR TCA 72 bp ATACAATACACTGTATCTCCTGTAAGAGGGATGAGCTaGAATGTCAGGTATTCCATGTGCCGCAACATGTGT +
Preference number: 3 (lower is better)
Translates to: IQYTVSPVRGMS*NVRYSMCRNMC
Trigger: ACACATGTTGCGGCACATGGAATACCTGACATTTCAGCTCATCCCTCTTACAGGAGATACAGTGTATTGTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026862.9
3UTR GCA 72 bp TTCTTGCACAGAAGACAGTATGGTCACTCTCACTTCTaGAGCACGATTTGCTCTCATATTTACATGGTATTT +
Preference number: 3 (lower is better)
Translates to: FLHRRQYGHSHF*STICSHIYMVF
Trigger: AAATACCATGTAAATATGAGAGCAAATCGTGCTGCAGAAGTGAGAGTGACCATACTGTCTTCTGTGCAAGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048490.13
ENSMUST00000191805.7
ENSMUST00000191872.6
CDS-3UTR CCA 90 bp AGGTGGTTTTCTCCACTGCAGGCTGGCCCAACCTTCTCCACAAGGGGGTGGGCGGCTGCGGCAGCTTCTTaGTCCACGGGTTCCCCTTTG +
Preference number: 4 (lower is better)
Translates to: RWFSPLQAGPTFSTRGWAAAAAS*STGSPL
Trigger: CAAAGGGGAACCCGTGGACCAAGAAGCTGCCGCAGC...CGCCCACCCCCTTGTGGAGAAGGTTGGGCCAGCCTGCAGTGGAGAAAACCACCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000048490.13
CDS-3UTR CCA 90 bp AGGTGGTTTTCTCCACTGCAGGCTGGCCCAACCTTCTCCACAAGGGGGTGGGCGAAGCTCTGTAGAAAATaGCTGCTCAGTCCTTTCCCC +
Preference number: 4 (lower is better)
Translates to: RWFSPLQAGPTFSTRGWAKLCRK*LLSPFP
Trigger: GGGGAAAGGACTGAGCAGCCATTTTCTACAGAGCTT...CGCCCACCCCCTTGTGGAGAAGGTTGGGCCAGCCTGCAGTGGAGAAAACCACCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000048490.13
ENSMUST00000191805.7
ENSMUST00000191872.6
CDS-3UTR CCA 90 bp AGGTGGTTTTCTCCACTGCAGGCTGGCCCAACCTTCTCCACAAGGGGGTGGGCGGTTAACCAATTCACCTaGTGTTGGCCAGTTTGCCAT +
Preference number: 4 (lower is better)
Translates to: RWFSPLQAGPTFSTRGWAVNQFT*CWPVCH
Trigger: ATGGCAAACTGGCCAACACCAGGTGAATTGGTTAAC...CGCCCACCCCCTTGTGGAGAAGGTTGGGCCAGCCTGCAGTGGAGAAAACCACCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000048490.13
ENSMUST00000191805.7
ENSMUST00000191872.6
CDS-3UTR CCA 90 bp TATCGTAAAGGTGGTTTTCTCCACTGCAGGCTGGCCCAACCTTCTCCACAAGGGTGGGAGCCAAAGGCCTaGCCAGGTATGAACTCCGGA +
Preference number: 4 (lower is better)
Translates to: YRKGGFLHCRLAQPSPQGWEPKA*PGMNSG
Trigger: TCCGGAGTTCATACCTGGCCAGGCCTTTGGCTCCCA...CCCTTGTGGAGAAGGTTGGGCCAGCCTGCAGTGGAGAAAACCACCTTTACGATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048490.13
ENSMUST00000191805.7
ENSMUST00000191872.6
CDS-3UTR CCA 90 bp GCCCAACCTTCTCCACAAGGGGGTGGGCGTAGACATTCTTGCACAGAAGACAGTATCACCCTGACTGTATaGGAGCCAAAGGCCTGGCCA +
Preference number: 4 (lower is better)
Translates to: AQPSPQGGGRRHSCTEDSITLTV*EPKAWP
Trigger: TGGCCAGGCCTTTGGCTCCCATACAGTCAGGGTGAT...ACTGTCTTCTGTGCAAGAATGTCTACGCCCACCCCCTTGTGGAGAAGGTTGGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000048490.13
ENSMUST00000191805.7
ENSMUST00000191872.6
CDS-3UTR GCA 90 bp GTGGTTTTCTCCACTGCAGGCTGGCCCAACCTTCTCCACAAGGGGGTGGGCGTACTTCCCGGTTCTCTTTaGTCTCACTGTTGCTTCTTT +
Preference number: 4 (lower is better)
Translates to: VVFSTAGWPNLLHKGVGVLPGSL*SHCCFF
Trigger: AAAGAAGCAACAGTGAGAGCAAAGAGAACCGGGAAG...TACGCCCACCCCCTTGTGGAGAAGGTTGGGCCAGCCTGCAGTGGAGAAAACCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000048490.13
ENSMUST00000191805.7
ENSMUST00000191872.6
CDS-3UTR CCA 90 bp AGGAGAGGCTCCTACAGTAACCGCAGTCCTCTGGTCTGTCTCACATCATTATCGTGGGAGCCAAAGGCCTaGCCAGGTATGAACTCCGGA +
Preference number: 4 (lower is better)
Translates to: RRGSYSNRSPLVCLTSLSWEPKA*PGMNSG
Trigger: TCCGGAGTTCATACCTGGCCAGGCCTTTGGCTCCCA...CGATAATGATGTGAGACAGACCAGAGGACTGCGGTTACTGTAGGAGCCTCTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048490.13
ENSMUST00000191805.7
ENSMUST00000191872.6
3UTR CAA 72 bp TTCCACATCTACACAGCAGCTGCAACTGCCTCTGACTaGGGAAAAGCAGTGTCCAGACCCACAGGCCTCACT +
Preference number: 4 (lower is better)
Translates to: FHIYTAAATASD*GKAVSRPTGLT
Trigger: AGTGAGGCCTGTGGGTCTGGACACTGCTTTTCCCAAGTCAGAGGCAGTTGCAGCTGCTGTGTAGATGTGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026862.9
CDS-3UTR TCA 90 bp GAAAGGAGAGGCTCCTACAGTAACCGCAGTCCTCTGGTCTGTCTCACATCATTACTCTGGCTGCTTGACTaGGCCTCATCCTCGCTGATG +
Preference number: 4 (lower is better)
Translates to: ERRGSYSNRSPLVCLTSLLWLLD*ASSSLM
Trigger: CATCAGCGAGGATGAGGCTCAGTCAAGCAGCCAGAG...TAATGATGTGAGACAGACCAGAGGACTGCGGTTACTGTAGGAGCCTCTCCTTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048490.13
ENSMUST00000191805.7
ENSMUST00000191872.6
CDS-3UTR TCA 90 bp TCCTCTGGTCTGTCTCACATCATTATCGTAAAGGTGGTTTTCTCCACTGCAGGCCTCTGGCTGCTTGACTaGGCCTCATCCTCGCTGATG +
Preference number: 4 (lower is better)
Translates to: SSGLSHIIIVKVVFSTAGLWLLD*ASSSLM
Trigger: CATCAGCGAGGATGAGGCTCAGTCAAGCAGCCAGAG...GCCTGCAGTGGAGAAAACCACCTTTACGATAATGATGTGAGACAGACCAGAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048490.13
ENSMUST00000191805.7
ENSMUST00000191872.6
CDS-3UTR CCA 90 bp GTAAAGGTGGTTTTCTCCACTGCAGGCTGGCCCAACCTTCTCCACAAGGGGGTGGTTAACCAATTCACCTaGTGTTGGCCAGTTTGCCAT +
Preference number: 4 (lower is better)
Translates to: VKVVFSTAGWPNLLHKGVVNQFT*CWPVCH
Trigger: ATGGCAAACTGGCCAACACCAGGTGAATTGGTTAAC...CACCCCCTTGTGGAGAAGGTTGGGCCAGCCTGCAGTGGAGAAAACCACCTTTAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000048490.13
ENSMUST00000191805.7
ENSMUST00000191872.6
CDS-3UTR CCA 90 bp GAAAGGAGAGGCTCCTACAGTAACCGCAGTCCTCTGGTCTGTCTCACATCATTAATCACCCTGACTGTATaGGAGCCAAAGGCCTGGCCA +
Preference number: 4 (lower is better)
Translates to: ERRGSYSNRSPLVCLTSLITLTV*EPKAWP
Trigger: TGGCCAGGCCTTTGGCTCCCATACAGTCAGGGTGAT...TAATGATGTGAGACAGACCAGAGGACTGCGGTTACTGTAGGAGCCTCTCCTTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048490.13
ENSMUST00000191805.7
ENSMUST00000191872.6
CDS-3UTR TCA 90 bp TCCCCAATGATAACAATTAACTTTCCCACCATGAATGAAGTAGCCCGTGCAGCCCTCTGGCTGCTTGACTaGGCCTCATCCTCGCTGATG +
Preference number: 4 (lower is better)
Translates to: SPMITINFPTMNEVARAALWLLD*ASSSLM
Trigger: CATCAGCGAGGATGAGGCTCAGTCAAGCAGCCAGAG...GGCTGCACGGGCTACTTCATTCATGGTGGGAAAGTTAATTGTTATCATTGGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048490.13
ENSMUST00000191805.7
ENSMUST00000191872.6
CDS-3UTR GCA 90 bp GAAAGGAGAGGCTCCTACAGTAACCGCAGTCCTCTGGTCTGTCTCACATCATTACTCTCTTCCTCTGGCTaGTTGACTGAGCCTCATCCT +
Preference number: 4 (lower is better)
Translates to: ERRGSYSNRSPLVCLTSLLSSSG*LTEPHP
Trigger: AGGATGAGGCTCAGTCAAGCAGCCAGAGGAAGAGAG...TAATGATGTGAGACAGACCAGAGGACTGCGGTTACTGTAGGAGCCTCTCCTTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048490.13
ENSMUST00000191805.7
ENSMUST00000191872.6
CDS-3UTR CCA 90 bp TTCAGAAAGTTCCACATCTACACAGCAGCTGCAACTGCCTCTGACTTGGGAAAACCTGTGGATTTCCCCTaGACACCGTCCTTGGGACTG +
Preference number: 4 (lower is better)
Translates to: FRKFHIYTAAATASDLGKPVDFP*TPSLGL
Trigger: CAGTCCCAAGGACGGTGTCCAGGGGAAATCCACAGG...TTTTCCCAAGTCAGAGGCAGTTGCAGCTGCTGTGTAGATGTGGAACTTTCTGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026862.9
CDS-3UTR CCA 90 bp TATCGTAAAGGTGGTTTTCTCCACTGCAGGCTGGCCCAACCTTCTCCACAAGGGAAGCTCTGTAGAAAATaGCTGCTCAGTCCTTTCCCC +
Preference number: 4 (lower is better)
Translates to: YRKGGFLHCRLAQPSPQGKLCRK*LLSPFP
Trigger: GGGGAAAGGACTGAGCAGCCATTTTCTACAGAGCTT...CCCTTGTGGAGAAGGTTGGGCCAGCCTGCAGTGGAGAAAACCACCTTTACGATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000048490.13
ENSMUST00000191805.7
ENSMUST00000191872.6
CDS-3UTR CCA 90 bp ACAGTAACCGCAGTCCTCTGGTCTGTCTCACATCATTATCGTAAAGGTGGTTTTTGGGAGCCAAAGGCCTaGCCAGGTATGAACTCCGGA +
Preference number: 4 (lower is better)
Translates to: TVTAVLWSVSHHYRKGGFWEPKA*PGMNSG
Trigger: TCCGGAGTTCATACCTGGCCAGGCCTTTGGCTCCCA...AAAACCACCTTTACGATAATGATGTGAGACAGACCAGAGGACTGCGGTTACTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000048490.13
ENSMUST00000191805.7
ENSMUST00000191872.6
CDS-3UTR TCA 90 bp CAACCTTCTCCACAAGGGGGTGGGCGTAGACATTCTTGCACAGAAGACAGTATGGGACAATCAATCAACTaGGAGAAGTCTGTTTGTGGC +
Preference number: 4 (lower is better)
Translates to: QPSPQGGGRRHSCTEDSMGQSIN*EKSVCG
Trigger: GCCACAAACAGACTTCTCTCAGTTGATTGATTGTCC...CATACTGTCTTCTGTGCAAGAATGTCTACGCCCACCCCCTTGTGGAGAAGGTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000048490.13
ENSMUST00000191805.7
ENSMUST00000191872.6
CDS-3UTR GCA 90 bp AGGAGAGGCTCCTACAGTAACCGCAGTCCTCTGGTCTGTCTCACATCATTATCGCTTCCCGGTTCTCTTTaGTCTCACTGTTGCTTCTTT +
Preference number: 4 (lower is better)
Translates to: RRGSYSNRSPLVCLTSLSLPGSL*SHCCFF
Trigger: AAAGAAGCAACAGTGAGAGCAAAGAGAACCGGGAAG...CGATAATGATGTGAGACAGACCAGAGGACTGCGGTTACTGTAGGAGCCTCTCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048490.13
ENSMUST00000191805.7
ENSMUST00000191872.6
CDS-3UTR CCA 90 bp CCTTCTCCACAAGGGGGTGGGCGTAGACATTCTTGCACAGAAGACAGTATGGTCCCTCACTTCTCACACTaGACACTTCATCTTGATCAT +
Preference number: 4 (lower is better)
Translates to: PSPQGGGRRHSCTEDSMVPHFSH*TLHLDH
Trigger: ATGATCAAGATGAAGTGTCCAGTGTGAGAAGTGAGG...GACCATACTGTCTTCTGTGCAAGAATGTCTACGCCCACCCCCTTGTGGAGAAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000048490.13
ENSMUST00000191805.7
ENSMUST00000191872.6
CDS-3UTR CCA 90 bp TTTCAGGGAGTCACCTACTCCACTGTATATTCCGATCATATGACATCCAAGAGCATCACCCTGACTGTATaGGAGCCAAAGGCCTGGCCA +
Preference number: 4 (lower is better)
Translates to: FQGVTYSTVYSDHMTSKSITLTV*EPKAWP
Trigger: TGGCCAGGCCTTTGGCTCCCATACAGTCAGGGTGAT...GCTCTTGGATGTCATATGATCGGAATATACAGTGGAGTAGGTGACTCCCTGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048490.13
ENSMUST00000191805.7
ENSMUST00000191872.6
CDS-3UTR TCA 90 bp GAAAGGAGAGGCTCCTACAGTAACCGCAGTCCTCTGGTCTGTCTCACATCATTAGGACAATCAATCAACTaGGAGAAGTCTGTTTGTGGC +
Preference number: 4 (lower is better)
Translates to: ERRGSYSNRSPLVCLTSLGQSIN*EKSVCG
Trigger: GCCACAAACAGACTTCTCTCAGTTGATTGATTGTCC...TAATGATGTGAGACAGACCAGAGGACTGCGGTTACTGTAGGAGCCTCTCCTTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048490.13
ENSMUST00000191805.7
ENSMUST00000191872.6
CDS-3UTR TCA 90 bp CACAGAAGACAGTATGGTCACTCTCACTTCTGCAGCACGATTTGCTCTCATATTAGGCCTGGCCAGGTATaGACTCCGGACAATCAATCA +
Preference number: 4 (lower is better)
Translates to: HRRQYGHSHFCSTICSHIRPGQV*TPDNQS
Trigger: TGATTGATTGTCCGGAGTTCATACCTGGCCAGGCCT...AATATGAGAGCAAATCGTGCTGCAGAAGTGAGAGTGACCATACTGTCTTCTGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048490.13
ENSMUST00000191805.7
ENSMUST00000191872.6
CDS-3UTR TCA 90 bp TTTCAGGGAGTCACCTACTCCACTGTATATTCCGATCATATGACATCCAAGAGCAGGCCTGGCCAGGTATaGACTCCGGACAATCAATCA +
Preference number: 4 (lower is better)
Translates to: FQGVTYSTVYSDHMTSKSRPGQV*TPDNQS
Trigger: TGATTGATTGTCCGGAGTTCATACCTGGCCAGGCCT...GCTCTTGGATGTCATATGATCGGAATATACAGTGGAGTAGGTGACTCCCTGAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048490.13
ENSMUST00000191805.7
ENSMUST00000191872.6
CDS-3UTR CCA 90 bp GAAAGGAGAGGCTCCTACAGTAACCGCAGTCCTCTGGTCTGTCTCACATCATTACAATTCACCTGGTGTTaGCCAGTTTGCCATATCACT +
Preference number: 4 (lower is better)
Translates to: ERRGSYSNRSPLVCLTSLQFTWC*PVCHIT
Trigger: AGTGATATGGCAAACTGGCCAACACCAGGTGAATTG...TAATGATGTGAGACAGACCAGAGGACTGCGGTTACTGTAGGAGCCTCTCCTTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048490.13
CDS-3UTR CCA 90 bp CTTCTCCACAAGGGGGTGGGCGTAGACATTCTTGCACAGAAGACAGTATGGTCACCTCACTTCTCACACTaGACACTTCATCTTGATCAT +
Preference number: 4 (lower is better)
Translates to: LLHKGVGVDILAQKTVWSPHFSH*TLHLDH
Trigger: ATGATCAAGATGAAGTGTCCAGTGTGAGAAGTGAGG...TGACCATACTGTCTTCTGTGCAAGAATGTCTACGCCCACCCCCTTGTGGAGAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000048490.13
ENSMUST00000191805.7
ENSMUST00000191872.6
CDS-3UTR CCA 90 bp TCCTCTGGTCTGTCTCACATCATTATCGTAAAGGTGGTTTTCTCCACTGCAGGCAAGCTCTGTAGAAAATaGCTGCTCAGTCCTTTCCCC +
Preference number: 4 (lower is better)
Translates to: SSGLSHIIIVKVVFSTAGKLCRK*LLSPFP
Trigger: GGGGAAAGGACTGAGCAGCCATTTTCTACAGAGCTT...GCCTGCAGTGGAGAAAACCACCTTTACGATAATGATGTGAGACAGACCAGAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000048490.13
ENSMUST00000191805.7
ENSMUST00000191872.6
CDS-3UTR CCA 90 bp CACATACACATTGAAGCCAATGTTGATTTCAAGAATACACGACGTTTGTGTACGGACAGAGGGTGGTCTTaGCCCATGGTCCCTGGACTC +
Preference number: 4 (lower is better)
Translates to: HIHIEANVDFKNTRRLCTDRGWS*PMVPGL
Trigger: GAGTCCAGGGACCATGGGCCAAGACCACCCTCTGTC...CGTACACAAACGTCGTGTATTCTTGAAATCAACATTGGCTTCAATGTGTATGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099121.10
CDS-3UTR GCA 90 bp TCTCACATCATTATCGTAAAGGTGGTTTTCTCCACTGCAGGCTGGCCCAACCTTTGGTGTTGGCCAGTTTaGCATATCACTGAAGTCACT +
Preference number: 4 (lower is better)
Translates to: SHIIIVKVVFSTAGWPNLWCWPV*HITEVT
Trigger: AGTGACTTCAGTGATATGGCAAACTGGCCAACACCA...AAGGTTGGGCCAGCCTGCAGTGGAGAAAACCACCTTTACGATAATGATGTGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048490.13
CDS-3UTR CCA 90 bp TCTCACATCATTATCGTAAAGGTGGTTTTCTCCACTGCAGGCTGGCCCAACCTTGTTAACCAATTCACCTaGTGTTGGCCAGTTTGCCAT +
Preference number: 4 (lower is better)
Translates to: SHIIIVKVVFSTAGWPNLVNQFT*CWPVCH
Trigger: ATGGCAAACTGGCCAACACCAGGTGAATTGGTTAAC...AAGGTTGGGCCAGCCTGCAGTGGAGAAAACCACCTTTACGATAATGATGTGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048490.13
ENSMUST00000191805.7
ENSMUST00000191872.6
3UTR CAA 72 bp AAAGACGCCATGGGATCCCCTGACGTCAAGCAGACCTaGTTTGTAGAATCAGGGAAAACATGTGGAGTTCAT +
Preference number: 4 (lower is better)
Translates to: KDAMGSPDVKQT*FVESGKTCGVH
Trigger: ATGAACTCCACATGTTTTCCCTGATTCTACAAACAAGGTCTGCTTGACGTCAGGGGATCCCATGGCGTCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026862.9
CDS-3UTR TCA 90 bp ATTCTTGCACAGAAGACAGTATGGTCACTCTCACTTCTGCAGCACGATTTGCTCGGACAATCAATCAACTaGGAGAAGTCTGTTTGTGGC +
Preference number: 4 (lower is better)
Translates to: ILAQKTVWSLSLLQHDLLGQSIN*EKSVCG
Trigger: GCCACAAACAGACTTCTCTCAGTTGATTGATTGTCC...GAGCAAATCGTGCTGCAGAAGTGAGAGTGACCATACTGTCTTCTGTGCAAGAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048490.13
ENSMUST00000191805.7
ENSMUST00000191872.6
CDS-3UTR TCA 90 bp GAAGCCAATGTTGATTTCAAGAATACACGACGTTTGTGTACGTATCTACTTCCCAAGCATTTGAACTGCTaGCAGAGGGTGGTCTTGGCC +
Preference number: 4 (lower is better)
Translates to: EANVDFKNTRRLCTYLLPKHLNC*QRVVLA
Trigger: GGCCAAGACCACCCTCTGTCAGCAGTTCAAATGCTT...GGGAAGTAGATACGTACACAAACGTCGTGTATTCTTGAAATCAACATTGGCTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099121.10
CDS-3UTR GCA 90 bp TCCCCAATGATAACAATTAACTTTCCCACCATGAATGAAGTAGCCCGTGCAGCCCTTCCCGGTTCTCTTTaGTCTCACTGTTGCTTCTTT +
Preference number: 4 (lower is better)
Translates to: SPMITINFPTMNEVARAALPGSL*SHCCFF
Trigger: AAAGAAGCAACAGTGAGAGCAAAGAGAACCGGGAAG...GGCTGCACGGGCTACTTCATTCATGGTGGGAAAGTTAATTGTTATCATTGGGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048490.13
ENSMUST00000191805.7
ENSMUST00000191872.6
CDS-3UTR GCA 90 bp CCTTCTCCACAAGGGGGTGGGCGTAGACATTCTTGCACAGAAGACAGTATGGTCCTTTTCCTATTACTGTaGGTTGGTTTATTTGCTTCA +
Preference number: 4 (lower is better)
Translates to: PSPQGGGRRHSCTEDSMVLFLLL*VGLFAS
Trigger: TGAAGCAAATAAACCAACGCACAGTAATAGGAAAAG...GACCATACTGTCTTCTGTGCAAGAATGTCTACGCCCACCCCCTTGTGGAGAAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000048490.13
ENSMUST00000191805.7
CDS-3UTR CCA 90 bp GAAGCCAATGTTGATTTCAAGAATACACGACGTTTGTGTACGTATCTACTTCCCAGGCTCAGCAGCACTTaGTGGAGGAAGTGTATGGTG +
Preference number: 4 (lower is better)
Translates to: EANVDFKNTRRLCTYLLPRLSST*WRKCMV
Trigger: CACCATACACTTCCTCCACCAAGTGCTGCTGAGCCT...GGGAAGTAGATACGTACACAAACGTCGTGTATTCTTGAAATCAACATTGGCTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026862.9
ENSMUST00000099121.10
CDS-3UTR CCA 90 bp AAAGGAGAGGCTCCTACAGTAACCGCAGTCCTCTGGTCTGTCTCACATCATTATCCTCACTTCTCACACTaGACACTTCATCTTGATCAT +
Preference number: 4 (lower is better)
Translates to: KGEAPTVTAVLWSVSHHYPHFSH*TLHLDH
Trigger: ATGATCAAGATGAAGTGTCCAGTGTGAGAAGTGAGG...ATAATGATGTGAGACAGACCAGAGGACTGCGGTTACTGTAGGAGCCTCTCCTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048490.13
ENSMUST00000191805.7
ENSMUST00000191872.6
CDS-3UTR GCA 90 bp AGGAGAGGCTCCTACAGTAACCGCAGTCCTCTGGTCTGTCTCACATCATTATCGCTTTTCCTATTACTGTaGGTTGGTTTATTTGCTTCA +
Preference number: 4 (lower is better)
Translates to: RRGSYSNRSPLVCLTSLSLFLLL*VGLFAS
Trigger: TGAAGCAAATAAACCAACGCACAGTAATAGGAAAAG...CGATAATGATGTGAGACAGACCAGAGGACTGCGGTTACTGTAGGAGCCTCTCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048490.13
ENSMUST00000191805.7
CDS-3UTR CCA 90 bp GCCAATGTTGATTTCAAGAATACACGACGTTTGTGTACGTATCTACTTCCCTGGCTCAGCAGCACTTGGTaGAGGAAGTGTATGGTGAAT +
Preference number: 4 (lower is better)
Translates to: ANVDFKNTRRLCTYLLPWLSSTW*RKCMVN
Trigger: ATTCACCATACACTTCCTCCACCAAGTGCTGCTGAG...CCAGGGAAGTAGATACGTACACAAACGTCGTGTATTCTTGAAATCAACATTGGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026862.9
ENSMUST00000099121.10
CDS-3UTR CCA 90 bp ACATACACATTGAAGCCAATGTTGATTTCAAGAATACACGACGTTTGTGTACGTAGGCTCAGCAGCACTTaGTGGAGGAAGTGTATGGTG +
Preference number: 4 (lower is better)
Translates to: TYTLKPMLISRIHDVCVRRLSST*WRKCMV
Trigger: CACCATACACTTCCTCCACCAAGTGCTGCTGAGCCT...ACGTACACAAACGTCGTGTATTCTTGAAATCAACATTGGCTTCAATGTGTATGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026862.9
ENSMUST00000099121.10
CDS-3UTR TCA 90 bp AGAAGATCTATCCACATACACATTGAAGCCAATGTTGATTTCAAGAATACACGACTGGACCTTTGTGAATaGCTGAGGCGGGTAGCTGTA +
Preference number: 4 (lower is better)
Translates to: RRSIHIHIEANVDFKNTRLDLCE*LRRVAV
Trigger: TACAGCTACCCGCCTCAGTCATTCACAAAGGTCCAG...TCGTGTATTCTTGAAATCAACATTGGCTTCAATGTGTATGTGGATAGATCTTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099121.10
CDS-3UTR CCA 90 bp ACATACACATTGAAGCCAATGTTGATTTCAAGAATACACGACGTTTGTGTACGTCTCAGCAGCACTTGGTaGAGGAAGTGTATGGTGAAT +
Preference number: 4 (lower is better)
Translates to: TYTLKPMLISRIHDVCVRLSSTW*RKCMVN
Trigger: ATTCACCATACACTTCCTCCACCAAGTGCTGCTGAG...ACGTACACAAACGTCGTGTATTCTTGAAATCAACATTGGCTTCAATGTGTATGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026862.9
ENSMUST00000099121.10
3UTR CAA 72 bp ATTGAAGCCAATGTTGATTTCAAGAATACACGACGTTaGTGTACGTATCTACTTCCCTGGTACTTCAACCCT +
Preference number: 4 (lower is better)
Translates to: IEANVDFKNTRR*CTYLLPWYFNP
Trigger: AGGGTTGAAGTACCAGGGAAGTAGATACGTACACAAACGTCGTGTATTCTTGAAATCAACATTGGCTTCAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026862.9
ENSMUST00000099121.10
CDS-3UTR TCA 90 bp TTGAAGCCAATGTTGATTTCAAGAATACACGACGTTTGTGTACGTATCTACTTCCTCCCCAGAAGTAGATaGATGTCTTTGTCTTCCAAA +
Preference number: 4 (lower is better)
Translates to: LKPMLISRIHDVCVRIYFLPRSR*MSLSSK
Trigger: TTTGGAAGACAAAGACATTCATCTACTTCTGGGGAG...GAAGTAGATACGTACACAAACGTCGTGTATTCTTGAAATCAACATTGGCTTCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026862.9
ENSMUST00000099121.10
CDS-3UTR TCA 90 bp ATTGAAGCCAATGTTGATTTCAAGAATACACGACGTTTGTGTACGTATCTACTTCTCCCCAGAAGTAGATaGATGTCTTTGTCTTCCAAA +
Preference number: 4 (lower is better)
Translates to: IEANVDFKNTRRLCTYLLLPRSR*MSLSSK
Trigger: TTTGGAAGACAAAGACATTCATCTACTTCTGGGGAG...AAGTAGATACGTACACAAACGTCGTGTATTCTTGAAATCAACATTGGCTTCAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026862.9
ENSMUST00000099121.10
CDS-3UTR GCA 90 bp TCCACATACACATTGAAGCCAATGTTGATTTCAAGAATACACGACGTTTGTGTATATCTGTGGTACAATTaGTGGGTAAAGCCATTTTCC +
Preference number: 4 (lower is better)
Translates to: STYTLKPMLISRIHDVCVYLWYN*WVKPFS
Trigger: GGAAAATGGCTTTACCCAGCAATTGTACCACAGATA...TACACAAACGTCGTGTATTCTTGAAATCAACATTGGCTTCAATGTGTATGTGGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099121.10
CDS-3UTR CCA 90 bp ATTGAAGCCAATGTTGATTTCAAGAATACACGACGTTTGTGTACGTATCTACTTATTTTCCAATTAAAGTaGTCTCTGAGGAAGAAGGAC +
Preference number: 4 (lower is better)
Translates to: IEANVDFKNTRRLCTYLLIFQLK*SLRKKD
Trigger: GTCCTTCTTCCTCAGAGACCACTTTAATTGGAAAAT...AAGTAGATACGTACACAAACGTCGTGTATTCTTGAAATCAACATTGGCTTCAAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099121.10
CDS GCA 90 bp GTTCCCCTTTGGCGGCGGCGGCGGCGGCTTGTCCTCCGGGCCGGCTaGCGCTGGGTCCTCGCGGGCGTCCTCCGGTGGGTCCCGCGGTGC +
Preference number: 5 (lower is better)
Translates to: VPLWRRRRRLVLRAG*RWVLAGVLRWVPRC
Trigger: GCACCGCGGGACCCACCGGAGGACGCCCGCGAGGACCCAGCGGCAGCCGGCCCGGAGGACAAGCCGCCGCCGCCGCCGCCAAAGGGGAAC
80% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048490.13
CDS-3UTR CAA 90 bp AGGTGGTTTTCTCCACTGCAGGCTGGCCCAACCTTCTCCACAAGGGGGTGGGCGGCTTCCCGGTTCTCTTaGCTCTCACTGTTGCTTCTT +
Preference number: 5 (lower is better)
Translates to: RWFSPLQAGPTFSTRGWAASRFS*LSLLLL
Trigger: AAGAAGCAACAGTGAGAGCAAAGAGAACCGGGAAGC...CGCCCACCCCCTTGTGGAGAAGGTTGGGCCAGCCTGCAGTGGAGAAAACCACCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000048490.13
ENSMUST00000191805.7
ENSMUST00000191872.6
CDS-3UTR CAA 90 bp GTAAAGGTGGTTTTCTCCACTGCAGGCTGGCCCAACCTTCTCCACAAGGGGGTGTCTTCCTCTGGCTGCTaGACTGAGCCTCATCCTCGC +
Preference number: 5 (lower is better)
Translates to: VKVVFSTAGWPNLLHKGVSSSGC*TEPHPR
Trigger: GCGAGGATGAGGCTCAGTCAAGCAGCCAGAGGAAGA...CACCCCCTTGTGGAGAAGGTTGGGCCAGCCTGCAGTGGAGAAAACCACCTTTAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000048490.13
ENSMUST00000191805.7
ENSMUST00000191872.6
CDS CCA 90 bp GTCCTTGGGACTGCAGTTCCCTGCAGATGCAGGCTCAGCAGCACTTaGTGGAGGAAGTGTATGGTGAATCCTCTCCTCCCCAGAAGTAGA +
Preference number: 5 (lower is better)
Translates to: VLGTAVPCRCRLSST*WRKCMVNPLLPRSR
Trigger: TCTACTTCTGGGGAGGAGAGGATTCACCATACACTTCCTCCACCAAGTGCTGCTGAGCCTGCATCTGCAGGGAACTGCAGTCCCAAGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026862.9
ENSMUST00000099121.10
CDS-3UTR CAA 90 bp GCCCAACCTTCTCCACAAGGGGGTGGGCGTAGACATTCTTGCACAGAAGACAGTCCCGCTTTTATAATTTaGGGGGAACTGAGCTCGGCC +
Preference number: 5 (lower is better)
Translates to: AQPSPQGGGRRHSCTEDSPAFII*GELSSA
Trigger: GGCCGAGCTCAGTTCCCCCAAAATTATAAAAGCGGG...ACTGTCTTCTGTGCAAGAATGTCTACGCCCACCCCCTTGTGGAGAAGGTTGGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000048490.13
CDS-3UTR CAA 90 bp CCTTCTCCACAAGGGGGTGGGCGTAGACATTCTTGCACAGAAGACAGTATGGTCGCTTCCCGGTTCTCTTaGCTCTCACTGTTGCTTCTT +
Preference number: 5 (lower is better)
Translates to: PSPQGGGRRHSCTEDSMVASRFS*LSLLLL
Trigger: AAGAAGCAACAGTGAGAGCAAAGAGAACCGGGAAGC...GACCATACTGTCTTCTGTGCAAGAATGTCTACGCCCACCCCCTTGTGGAGAAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000048490.13
ENSMUST00000191805.7
ENSMUST00000191872.6
CDS-3UTR CAA 90 bp TTTCAGGGAGTCACCTACTCCACTGTATATTCCGATCATATGACATCCAAGAGCTGCTGCGGCAGCTTCTaGGTCCACGGGTTCCCCTTT +
Preference number: 5 (lower is better)
Translates to: FQGVTYSTVYSDHMTSKSCCGSF*VHGFPF
Trigger: AAAGGGGAACCCGTGGACCAAGAAGCTGCCGCAGCA...GCTCTTGGATGTCATATGATCGGAATATACAGTGGAGTAGGTGACTCCCTGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048490.13
CDS-3UTR CAA 90 bp TCCCCAATGATAACAATTAACTTTCCCACCATGAATGAAGTAGCCCGTGCAGCCTCTTCCTCTGGCTGCTaGACTGAGCCTCATCCTCGC +
Preference number: 5 (lower is better)
Translates to: SPMITINFPTMNEVARAASSSGC*TEPHPR
Trigger: GCGAGGATGAGGCTCAGTCAAGCAGCCAGAGGAAGA...GGCTGCACGGGCTACTTCATTCATGGTGGGAAAGTTAATTGTTATCATTGGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048490.13
ENSMUST00000191805.7
ENSMUST00000191872.6
CDS-3UTR CAA 90 bp TCCTCTGGTCTGTCTCACATCATTATCGTAAAGGTGGTTTTCTCCACTGCAGGCGCTTCCCGGTTCTCTTaGCTCTCACTGTTGCTTCTT +
Preference number: 5 (lower is better)
Translates to: SSGLSHIIIVKVVFSTAGASRFS*LSLLLL
Trigger: AAGAAGCAACAGTGAGAGCAAAGAGAACCGGGAAGC...GCCTGCAGTGGAGAAAACCACCTTTACGATAATGATGTGAGACAGACCAGAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048490.13
ENSMUST00000191805.7
ENSMUST00000191872.6
CDS-3UTR CAA 90 bp TATCGTAAAGGTGGTTTTCTCCACTGCAGGCTGGCCCAACCTTCTCCACAAGGGACTGGACACTTCATCTaGATCATCTCTCTTTTCTCT +
Preference number: 5 (lower is better)
Translates to: YRKGGFLHCRLAQPSPQGTGHFI*IISLFS
Trigger: AGAGAAAAGAGAGATGATCAAGATGAAGTGTCCAGT...CCCTTGTGGAGAAGGTTGGGCCAGCCTGCAGTGGAGAAAACCACCTTTACGATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000048490.13
ENSMUST00000191805.7
ENSMUST00000191872.6
CDS-3UTR CAA 90 bp GAAGCCAATGTTGATTTCAAGAATACACGACGTTTGTGTACGTATCTACTTCCCCAGGCTCAGCAGCACTaGGTGGAGGAAGTGTATGGT +
Preference number: 5 (lower is better)
Translates to: EANVDFKNTRRLCTYLLPQAQQH*VEEVYG
Trigger: ACCATACACTTCCTCCACCAAGTGCTGCTGAGCCTG...GGGAAGTAGATACGTACACAAACGTCGTGTATTCTTGAAATCAACATTGGCTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026862.9
ENSMUST00000099121.10
CDS-3UTR CAA 90 bp AGAAGATCTATCCACATACACATTGAAGCCAATGTTGATTTCAAGAATACACGACCCTGGACACCGTCCTaGGGACTGCAGTTCCCTGCA +
Preference number: 5 (lower is better)
Translates to: RRSIHIHIEANVDFKNTRPWTPS*GLQFPA
Trigger: TGCAGGGAACTGCAGTCCCAAGGACGGTGTCCAGGG...TCGTGTATTCTTGAAATCAACATTGGCTTCAATGTGTATGTGGATAGATCTTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026862.9
ENSMUST00000099121.10
CDS-3UTR CAA 90 bp GGGGGTGGGCGTAGACATTCTTGCACAGAAGACAGTATGGTCACTCTCACTTCTACTGGACACTTCATCTaGATCATCTCTCTTTTCTCT +
Preference number: 5 (lower is better)
Translates to: GGGRRHSCTEDSMVTLTSTGHFI*IISLFS
Trigger: AGAGAAAAGAGAGATGATCAAGATGAAGTGTCCAGT...AGAAGTGAGAGTGACCATACTGTCTTCTGTGCAAGAATGTCTACGCCCACCCCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000048490.13
ENSMUST00000191805.7
ENSMUST00000191872.6
CDS-3UTR CAA 90 bp CACATACACATTGAAGCCAATGTTGATTTCAAGAATACACGACGTTTGTGTACGCAGGCTCAGCAGCACTaGGTGGAGGAAGTGTATGGT +
Preference number: 5 (lower is better)
Translates to: HIHIEANVDFKNTRRLCTQAQQH*VEEVYG
Trigger: ACCATACACTTCCTCCACCAAGTGCTGCTGAGCCTG...CGTACACAAACGTCGTGTATTCTTGAAATCAACATTGGCTTCAATGTGTATGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026862.9
ENSMUST00000099121.10
CDS-3UTR CAA 90 bp TCCTCTGGTCTGTCTCACATCATTATCGTAAAGGTGGTTTTCTCCACTGCAGGCAAGTCACTAGCCTTGTaGGATTTCTTTGTCTTGAGT +
Preference number: 5 (lower is better)
Translates to: SSGLSHIIIVKVVFSTAGKSLAL*DFFVLS
Trigger: ACTCAAGACAAAGAAATCCAACAAGGCTAGTGACTT...GCCTGCAGTGGAGAAAACCACCTTTACGATAATGATGTGAGACAGACCAGAGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048490.13
CDS-3UTR CAA 90 bp CCAATGTTGATTTCAAGAATACACGACGTTTGTGTACGTATCTACTTCCCTGGTAGGCTGGGTCTTAGATaGAGAATATTCCAGATAGGC +
Preference number: 5 (lower is better)
Translates to: PMLISRIHDVCVRIYFPGRLGLR*RIFQIG
Trigger: GCCTATCTGGAATATTCTCAATCTAAGACCCAGCCT...ACCAGGGAAGTAGATACGTACACAAACGTCGTGTATTCTTGAAATCAACATTGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026862.9
ENSMUST00000099121.10
CDS-3UTR CAA 90 bp TATTTACATGGTATTTCAGGGAGTCACCTACTCCACTGTATATTCCGATCATATCCAATTCACCTGGTGTaGGCCAGTTTGCCATATCAC +
Preference number: 5 (lower is better)
Translates to: YLHGISGSHLLHCIFRSYPIHLV*ASLPYH
Trigger: GTGATATGGCAAACTGGCCAACACCAGGTGAATTGG...ATATGATCGGAATATACAGTGGAGTAGGTGACTCCCTGAAATACCATGTAAATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048490.13
CDS-3UTR CAA 90 bp ACAGTAACCGCAGTCCTCTGGTCTGTCTCACATCATTATCGTAAAGGTGGTTTTACTGGACACTTCATCTaGATCATCTCTCTTTTCTCT +
Preference number: 5 (lower is better)
Translates to: TVTAVLWSVSHHYRKGGFTGHFI*IISLFS
Trigger: AGAGAAAAGAGAGATGATCAAGATGAAGTGTCCAGT...AAAACCACCTTTACGATAATGATGTGAGACAGACCAGAGGACTGCGGTTACTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000048490.13
ENSMUST00000191805.7
ENSMUST00000191872.6
CDS-3UTR CAA 90 bp GCCAATGTTGATTTCAAGAATACACGACGTTTGTGTACGTATCTACTTCCCTGGACCTGTAATTCTCTTTaGCATCTTCCCAAGCAAGTT +
Preference number: 5 (lower is better)
Translates to: ANVDFKNTRRLCTYLLPWTCNSL*HLPKQV
Trigger: AACTTGCTTGGGAAGATGCAAAAGAGAATTACAGGT...CCAGGGAAGTAGATACGTACACAAACGTCGTGTATTCTTGAAATCAACATTGGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099121.10
CDS-3UTR CAA 90 bp TTGAAGCCAATGTTGATTTCAAGAATACACGACGTTTGTGTACGTATCTACTTCAGGCTGGGTCTTAGATaGAGAATATTCCAGATAGGC +
Preference number: 5 (lower is better)
Translates to: LKPMLISRIHDVCVRIYFRLGLR*RIFQIG
Trigger: GCCTATCTGGAATATTCTCAATCTAAGACCCAGCCT...GAAGTAGATACGTACACAAACGTCGTGTATTCTTGAAATCAACATTGGCTTCAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026862.9
ENSMUST00000099121.10
CDS-3UTR CAA 90 bp ACATACACATTGAAGCCAATGTTGATTTCAAGAATACACGACGTTTGTGTACGTATATCTGTGGTACAATaGCTGGGTAAAGCCATTTTC +
Preference number: 5 (lower is better)
Translates to: TYTLKPMLISRIHDVCVRISVVQ*LGKAIF
Trigger: GAAAATGGCTTTACCCAGCAATTGTACCACAGATAT...ACGTACACAAACGTCGTGTATTCTTGAAATCAACATTGGCTTCAATGTGTATGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099121.10
CDS-3UTR CAA 90 bp ATTGAAGCCAATGTTGATTTCAAGAATACACGACGTTTGTGTACGTATCTACTTATCTTCCCAAGCAAGTaGTCTAAATTCCTCATACAT +
Preference number: 5 (lower is better)
Translates to: IEANVDFKNTRRLCTYLLIFPSK*SKFLIH
Trigger: ATGTATGAGGAATTTAGACAACTTGCTTGGGAAGAT...AAGTAGATACGTACACAAACGTCGTGTATTCTTGAAATCAACATTGGCTTCAAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099121.10
CDS CCA 72 bp GTGCTGCGGCAGCTTCTTGGTCCACGGGTTCCCCTTTaGCGGCGGCGGCGGCGGCTTGTCCTCCGGGCCGGC +
Preference number: 6 (lower is better)
Translates to: VLRQLLGPRVPL*RRRRRLVLRAG
Trigger: GCCGGCCCGGAGGACAAGCCGCCGCCGCCGCCGCCAAAGGGGAACCCGTGGACCAAGAAGCTGCCGCAGCAC
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048490.13
CDS GCA 72 bp CCTCCGGGGAGTCCTGAGCGGGCGACGGCACGCCGGTaGCCACGGTGGACAGGTGCTGCGGCAGCTTCTTGG +
Preference number: 6 (lower is better)
Translates to: PPGSPERATARR*PRWTGAAAASW
Trigger: CCAAGAAGCTGCCGCAGCACCTGTCCACCGTGGGCACCGGCGTGCCGTCGCCCGCTCAGGACTCCCCGGAGG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048490.13
CDS GCA 72 bp GCGGGCGACGGCACGCCGGTGCCCACGGTGGACAGGTaGTGCGGCAGCTTCTTGGTCCACGGGTTCCCCTTT +
Preference number: 6 (lower is better)
Translates to: AGDGTPVPTVDR*CGSFLVHGFPF
Trigger: AAAGGGGAACCCGTGGACCAAGAAGCTGCCGCAGCACCTGTCCACCGTGGGCACCGGCGTGCCGTCGCCCGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048490.13
CDS CAA 72 bp CACTGGGCTCCTGTGGATTTCCCCTGGACACCGTCCTaGGGACTGCAGTTCCCTGCAGATGCAGGCTCAGCA +
Preference number: 6 (lower is better)
Translates to: HWAPVDFPWTPS*GLQFPADAGSA
Trigger: TGCTGAGCCTGCATCTGCAGGGAACTGCAGTCCCAAGGACGGTGTCCAGGGGAAATCCACAGGAGCCCAGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026862.9
ENSMUST00000099121.10
CDS GCA 72 bp TTTCCCCTGGACACCGTCCTTGGGACTGCAGTTCCCTaGAGATGCAGGCTCAGCAGCACTTGGTGGAGGAAG +
Preference number: 6 (lower is better)
Translates to: FPLDTVLGTAVP*RCRLSSTWWRK
Trigger: CTTCCTCCACCAAGTGCTGCTGAGCCTGCATCTGCAGGGAACTGCAGTCCCAAGGACGGTGTCCAGGGGAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026862.9
ENSMUST00000099121.10
CDS GCA 72 bp CTCCTGTGGATTTCCCCTGGACACCGTCCTTGGGACTaGAGTTCCCTGCAGATGCAGGCTCAGCAGCACTTG +
Preference number: 6 (lower is better)
Translates to: LLWISPGHRPWD*SSLQMQAQQHL
Trigger: CAAGTGCTGCTGAGCCTGCATCTGCAGGGAACTGCAGTCCCAAGGACGGTGTCCAGGGGAAATCCACAGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026862.9
ENSMUST00000099121.10
CDS TCA 72 bp GTGGCACACCTTCTGAAGGTGAAGCATTTGAACTGCTaGCAGAGGGTGGTCTTGGCCCATGGTCCCTGGACT +
Preference number: 6 (lower is better)
Translates to: VAHLLKVKHLNC*QRVVLAHGPWT
Trigger: AGTCCAGGGACCATGGGCCAAGACCACCCTCTGTCAGCAGTTCAAATGCTTCACCTTCAGAAGGTGTGCCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099121.10
CDS CAA 90 bp ACCTCGGATGGTACCACCCTCACTTCTCACACTGGACACTTCATCTaGATCATCTCTCTTTTCTCTCTCCCGTCTCCAACCTCTCTTCCT +
Preference number: 6 (lower is better)
Translates to: TSDGTTLTSHTGHFI*IISLFSLPSPTSLP
Trigger: AGGAAGAGAGGTTGGAGACGGGAGAGAGAAAAGAGAGATGATCAAGATGAAGTGTCCAGTGTGAGAAGTGAGGGTGGTACCATCCGAGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191872.6
CDS CCA 72 bp GATAACACTCTGAGACCCCGTGTTAACCAATTCACCTaGTGTTGGCCAGTTTGCCATATCACTGAAGTCACT +
Preference number: 6 (lower is better)
Translates to: DNTLRPRVNQFT*CWPVCHITEVT
Trigger: AGTGACTTCAGTGATATGGCAAACTGGCCAACACCAGGTGAATTGGTTAACACGGGGTCTCAGAGTGTTATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048490.13
CDS TCA 72 bp AAGTGTATGGTGAATCCTCTCCTCCCCAGAAGTAGATaGATGTCTTTGTCTTCCAAATTCCTCACTAGAAGG +
Preference number: 6 (lower is better)
Translates to: KCMVNPLLPRSR*MSLSSKFLTRR
Trigger: CCTTCTAGTGAGGAATTTGGAAGACAAAGACATTCATCTACTTCTGGGGAGGAGAGGATTCACCATACACTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026862.9
ENSMUST00000099121.10