Pregenerated sensors for LARP1B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025762Ensembl transcript IDs: ENSMUST00000026862.9, ENSMUST00000048490.13, ENSMUST00000099121.10, ENSMUST00000191805.7, ENSMUST00000191872.6
Found 100 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
---|---|---|
3UTR GCA 90 bp | AGGCTGGCCCAACCTTCTCCACAAGGGGGTGGGCGTAGACATTCTTaGACAGAAGACAGTATGGTCACTCTCACTTCTGCAGCACGATTT | + |
Preference number: 1 (lower is better) Translates to: RLAQPSPQGGGRRHS*TEDSMVTLTSAARF Trigger: AAATCGTGCTGCAGAAGTGAGAGTGACCATACTGTCTTCTGTGCAAGAATGTCTACGCCCACCCCCTTGTGGAGAAGGTTGGGCCAGCCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000048490.13 ENSMUST00000191805.7 ENSMUST00000191872.6 |
||
3UTR GCA 90 bp | CTCTGGTCTGTCTCACATCATTATCGTAAAGGTGGTTTTCTCCACTaGAGGCTGGCCCAACCTTCTCCACAAGGGGGTGGGCGTAGACAT | + |
Preference number: 1 (lower is better) Translates to: LWSVSHHYRKGGFLH*RLAQPSPQGGGRRH Trigger: ATGTCTACGCCCACCCCCTTGTGGAGAAGGTTGGGCCAGCCTGCAGTGGAGAAAACCACCTTTACGATAATGATGTGAGACAGACCAGAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000048490.13 ENSMUST00000191805.7 ENSMUST00000191872.6 |
||
3UTR CCA 90 bp | CTGTCTCACATCATTATCGTAAAGGTGGTTTTCTCCACTGCAGGCTaGCCCAACCTTCTCCACAAGGGGGTGGGCGTAGACATTCTTGCA | + |
Preference number: 1 (lower is better) Translates to: LSHIIIVKVVFSTAG*PNLLHKGVGVDILA Trigger: TGCAAGAATGTCTACGCCCACCCCCTTGTGGAGAAGGTTGGGCCAGCCTGCAGTGGAGAAAACCACCTTTACGATAATGATGTGAGACAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000048490.13 ENSMUST00000191805.7 ENSMUST00000191872.6 |
||
3UTR GCA 90 bp | GGAAAAGCAGTGTCCAGACCCACAGGCCTCACTACAGCTACAGTCTaGTATGCATTCCTTTGTTGTGTGTGTGTGTGTGTGTGTGTGTGT | + |
Preference number: 1 (lower is better) Translates to: GKAVSRPTGLTTATV*YAFLCCVCVCVCVC Trigger: ACACACACACACACACACACACACACAACAAAGGAATGCATAGCAGACTGTAGCTGTAGTGAGGCCTGTGGGTCTGGACACTGCTTTTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026862.9 |
||
3UTR CCA 90 bp | CTCCACAAGGGGGTGGGCGTAGACATTCTTGCACAGAAGACAGTATaGTCACTCTCACTTCTGCAGCACGATTTGCTCTCATATTTACAT | + |
Preference number: 1 (lower is better) Translates to: LHKGVGVDILAQKTV*SLSLLQHDLLSYLH Trigger: ATGTAAATATGAGAGCAAATCGTGCTGCAGAAGTGAGAGTGACCATACTGTCTTCTGTGCAAGAATGTCTACGCCCACCCCCTTGTGGAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000048490.13 ENSMUST00000191805.7 ENSMUST00000191872.6 |
||
3UTR TCA 90 bp | TATGCATTCCTTTGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATaGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA | + |
Preference number: 1 (lower is better) Translates to: YAFLCCVCVCVCVCV*ERERERERERERER Trigger: TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATACACACACACACACACACACACACACACAACAAAGGAATGCATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026862.9 |
||
3UTR GCA 90 bp | TTGCACAGAAGACAGTATGGTCACTCTCACTTCTGCAGCACGATTTaGTCTCATATTTACATGGTATTTCAGGGAGTCACCTACTCCACT | + |
Preference number: 1 (lower is better) Translates to: LHRRQYGHSHFCSTI*SHIYMVFQGVTYST Trigger: AGTGGAGTAGGTGACTCCCTGAAATACCATGTAAATATGAGAGCAAATCGTGCTGCAGAAGTGAGAGTGACCATACTGTCTTCTGTGCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000048490.13 ENSMUST00000191805.7 ENSMUST00000191872.6 |
||
3UTR-3UTR GCA 90 bp | TATCGTAAAGGTGGTTTTCTCCACTGCAGGCTGGCCCAACCTTCTCCACAAGGGGGGCGTAGACATTCTTaGACAGAAGACAGTATGGTC | + |
Preference number: 2 (lower is better) Translates to: YRKGGFLHCRLAQPSPQGGRRHS*TEDSMV Trigger: GACCATACTGTCTTCTGTGCAAGAATGTCTACGCCC...CCCTTGTGGAGAAGGTTGGGCCAGCCTGCAGTGGAGAAAACCACCTTTACGATA 51% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000048490.13 ENSMUST00000191805.7 ENSMUST00000191872.6 |
||
3UTR-3UTR CCA 90 bp | AAAGGAGAGGCTCCTACAGTAACCGCAGTCCTCTGGTCTGTCTCACATCATTATTTCTCCACTGCAGGCTaGCCCAACCTTCTCCACAAG | + |
Preference number: 2 (lower is better) Translates to: KGEAPTVTAVLWSVSHHYFSTAG*PNLLHK Trigger: CTTGTGGAGAAGGTTGGGCCAGCCTGCAGTGGAGAA...ATAATGATGTGAGACAGACCAGAGGACTGCGGTTACTGTAGGAGCCTCTCCTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000048490.13 ENSMUST00000191805.7 ENSMUST00000191872.6 |
||
3UTR CAA 90 bp | ACCCACAGGCCTCACTACAGCTACAGTCTGCTATGCATTCCTTTGTaGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGAGAGAGAGAGAG | + |
Preference number: 2 (lower is better) Translates to: THRPHYSYSLLCIPL*CVCVCVCVCMRERE Trigger: CTCTCTCTCTCTCATACACACACACACACACACACACACACACAACAAAGGAATGCATAGCAGACTGTAGCTGTAGTGAGGCCTGTGGGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026862.9 |
||
3UTR-3UTR TCA 90 bp | ACTTGGGAAAAGCAGTGTCCAGACCCACAGGCCTCACTACAGCTACAGTCTGCTCCTTCCCTTGCTTTTTaGTATGTTCAAACATGGATT | + |
Preference number: 2 (lower is better) Translates to: TWEKQCPDPQASLQLQSAPSLAF*YVQTWI Trigger: AATCCATGTTTGAACATATCAAAAAGCAAGGGAAGG...AGCAGACTGTAGCTGTAGTGAGGCCTGTGGGTCTGGACACTGCTTTTCCCAAGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026862.9 |
||
3UTR CAA 90 bp | CTTGCACAGAAGACAGTATGGTCACTCTCACTTCTGCAGCACGATTaGCTCTCATATTTACATGGTATTTCAGGGAGTCACCTACTCCAC | + |
Preference number: 2 (lower is better) Translates to: LAQKTVWSLSLLQHD*LSYLHGISGSHLLH Trigger: GTGGAGTAGGTGACTCCCTGAAATACCATGTAAATATGAGAGCAAATCGTGCTGCAGAAGTGAGAGTGACCATACTGTCTTCTGTGCAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000048490.13 ENSMUST00000191805.7 ENSMUST00000191872.6 |
||
3UTR CAA 90 bp | CACATACACATTGAAGCCAATGTTGATTTCAAGAATACACGACGTTaGTGTACGTATCTACTTCCCTGGTACTTCAACCCTAGAGGCCAA | + |
Preference number: 2 (lower is better) Translates to: HIHIEANVDFKNTRR*CTYLLPWYFNPRGQ Trigger: TTGGCCTCTAGGGTTGAAGTACCAGGGAAGTAGATACGTACACAAACGTCGTGTATTCTTGAAATCAACATTGGCTTCAATGTGTATGTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026862.9 ENSMUST00000099121.10 |
||
3UTR-3UTR CCA 90 bp | AGAAGATCTATCCACATACACATTGAAGCCAATGTTGATTTCAAGAATACACGAACGTATCTACTTCCCTaGTACTTCAACCCTAGAGGC | + |
Preference number: 2 (lower is better) Translates to: RRSIHIHIEANVDFKNTRTYLLP*YFNPRG Trigger: GCCTCTAGGGTTGAAGTACCAGGGAAGTAGATACGT...TCGTGTATTCTTGAAATCAACATTGGCTTCAATGTGTATGTGGATAGATCTTCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026862.9 ENSMUST00000099121.10 |
||
3UTR CAA 90 bp | TTCATCTCCATTTCTGAAGTTAAGACCTATATACATAACCTTCCCTaGCTTTTTGATATGTTCAAACATGGATTGACAGGGAGACAACTG | + |
Preference number: 2 (lower is better) Translates to: FISISEVKTYIHNLP*LFDMFKHGLTGRQL Trigger: CAGTTGTCTCCCTGTCAATCCATGTTTGAACATATCAAAAAGCAAGGGAAGGTTATGTATATAGGTCTTAACTTCAGAAATGGAGATGAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026862.9 |
||
3UTR CCA 72 bp | TCCACATCTACACAGCAGCTGCAACTGCCTCTGACTTaGGAAAAGCAGTGTCCAGACCCACAGGCCTCACTA | + |
Preference number: 3 (lower is better) Translates to: STSTQQLQLPLT*EKQCPDPQASL Trigger: TAGTGAGGCCTGTGGGTCTGGACACTGCTTTTCCCAAGTCAGAGGCAGTTGCAGCTGCTGTGTAGATGTGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026862.9 |
||
3UTR CCA 72 bp | ATCATTATCGTAAAGGTGGTTTTCTCCACTGCAGGCTaGCCCAACCTTCTCCACAAGGGGGTGGGCGTAGAC | + |
Preference number: 3 (lower is better) Translates to: IIIVKVVFSTAG*PNLLHKGVGVD Trigger: GTCTACGCCCACCCCCTTGTGGAGAAGGTTGGGCCAGCCTGCAGTGGAGAAAACCACCTTTACGATAATGAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000048490.13 ENSMUST00000191805.7 ENSMUST00000191872.6 |
||
3UTR TCA 72 bp | AAAGTTCCACATCTACACAGCAGCTGCAACTGCCTCTaGCTTGGGAAAAGCAGTGTCCAGACCCACAGGCCT | + |
Preference number: 3 (lower is better) Translates to: KVPHLHSSCNCL*LGKSSVQTHRP Trigger: AGGCCTGTGGGTCTGGACACTGCTTTTCCCAAGTCAGAGGCAGTTGCAGCTGCTGTGTAGATGTGGAACTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026862.9 |
||
3UTR GCA 72 bp | CAACCTTCTCCACAAGGGGGTGGGCGTAGACATTCTTaGACAGAAGACAGTATGGTCACTCTCACTTCTGCA | + |
Preference number: 3 (lower is better) Translates to: QPSPQGGGRRHS*TEDSMVTLTSA Trigger: TGCAGAAGTGAGAGTGACCATACTGTCTTCTGTGCAAGAATGTCTACGCCCACCCCCTTGTGGAGAAGGTTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000048490.13 ENSMUST00000191805.7 ENSMUST00000191872.6 |
||
3UTR TCA 72 bp | ATACAATACACTGTATCTCCTGTAAGAGGGATGAGCTaGAATGTCAGGTATTCCATGTGCCGCAACATGTGT | + |
Preference number: 3 (lower is better) Translates to: IQYTVSPVRGMS*NVRYSMCRNMC Trigger: ACACATGTTGCGGCACATGGAATACCTGACATTTCAGCTCATCCCTCTTACAGGAGATACAGTGTATTGTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026862.9 |
||
3UTR GCA 72 bp | TTCTTGCACAGAAGACAGTATGGTCACTCTCACTTCTaGAGCACGATTTGCTCTCATATTTACATGGTATTT | + |
Preference number: 3 (lower is better) Translates to: FLHRRQYGHSHF*STICSHIYMVF Trigger: AAATACCATGTAAATATGAGAGCAAATCGTGCTGCAGAAGTGAGAGTGACCATACTGTCTTCTGTGCAAGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000048490.13 ENSMUST00000191805.7 ENSMUST00000191872.6 |
||
CDS-3UTR CCA 90 bp | AGGTGGTTTTCTCCACTGCAGGCTGGCCCAACCTTCTCCACAAGGGGGTGGGCGGCTGCGGCAGCTTCTTaGTCCACGGGTTCCCCTTTG | + |
Preference number: 4 (lower is better) Translates to: RWFSPLQAGPTFSTRGWAAAAAS*STGSPL Trigger: CAAAGGGGAACCCGTGGACCAAGAAGCTGCCGCAGC...CGCCCACCCCCTTGTGGAGAAGGTTGGGCCAGCCTGCAGTGGAGAAAACCACCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000048490.13 |
||
CDS-3UTR CCA 90 bp | AGGTGGTTTTCTCCACTGCAGGCTGGCCCAACCTTCTCCACAAGGGGGTGGGCGAAGCTCTGTAGAAAATaGCTGCTCAGTCCTTTCCCC | + |
Preference number: 4 (lower is better) Translates to: RWFSPLQAGPTFSTRGWAKLCRK*LLSPFP Trigger: GGGGAAAGGACTGAGCAGCCATTTTCTACAGAGCTT...CGCCCACCCCCTTGTGGAGAAGGTTGGGCCAGCCTGCAGTGGAGAAAACCACCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000048490.13 ENSMUST00000191805.7 ENSMUST00000191872.6 |
||
CDS-3UTR CCA 90 bp | AGGTGGTTTTCTCCACTGCAGGCTGGCCCAACCTTCTCCACAAGGGGGTGGGCGGTTAACCAATTCACCTaGTGTTGGCCAGTTTGCCAT | + |
Preference number: 4 (lower is better) Translates to: RWFSPLQAGPTFSTRGWAVNQFT*CWPVCH Trigger: ATGGCAAACTGGCCAACACCAGGTGAATTGGTTAAC...CGCCCACCCCCTTGTGGAGAAGGTTGGGCCAGCCTGCAGTGGAGAAAACCACCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000048490.13 ENSMUST00000191805.7 ENSMUST00000191872.6 |
||
CDS-3UTR CCA 90 bp | TATCGTAAAGGTGGTTTTCTCCACTGCAGGCTGGCCCAACCTTCTCCACAAGGGTGGGAGCCAAAGGCCTaGCCAGGTATGAACTCCGGA | + |
Preference number: 4 (lower is better) Translates to: YRKGGFLHCRLAQPSPQGWEPKA*PGMNSG Trigger: TCCGGAGTTCATACCTGGCCAGGCCTTTGGCTCCCA...CCCTTGTGGAGAAGGTTGGGCCAGCCTGCAGTGGAGAAAACCACCTTTACGATA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000048490.13 ENSMUST00000191805.7 ENSMUST00000191872.6 |
||
CDS-3UTR CCA 90 bp | GCCCAACCTTCTCCACAAGGGGGTGGGCGTAGACATTCTTGCACAGAAGACAGTATCACCCTGACTGTATaGGAGCCAAAGGCCTGGCCA | + |
Preference number: 4 (lower is better) Translates to: AQPSPQGGGRRHSCTEDSITLTV*EPKAWP Trigger: TGGCCAGGCCTTTGGCTCCCATACAGTCAGGGTGAT...ACTGTCTTCTGTGCAAGAATGTCTACGCCCACCCCCTTGTGGAGAAGGTTGGGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000048490.13 ENSMUST00000191805.7 ENSMUST00000191872.6 |
||
CDS-3UTR GCA 90 bp | GTGGTTTTCTCCACTGCAGGCTGGCCCAACCTTCTCCACAAGGGGGTGGGCGTACTTCCCGGTTCTCTTTaGTCTCACTGTTGCTTCTTT | + |
Preference number: 4 (lower is better) Translates to: VVFSTAGWPNLLHKGVGVLPGSL*SHCCFF Trigger: AAAGAAGCAACAGTGAGAGCAAAGAGAACCGGGAAG...TACGCCCACCCCCTTGTGGAGAAGGTTGGGCCAGCCTGCAGTGGAGAAAACCAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000048490.13 ENSMUST00000191805.7 ENSMUST00000191872.6 |
||
CDS-3UTR CCA 90 bp | AGGAGAGGCTCCTACAGTAACCGCAGTCCTCTGGTCTGTCTCACATCATTATCGTGGGAGCCAAAGGCCTaGCCAGGTATGAACTCCGGA | + |
Preference number: 4 (lower is better) Translates to: RRGSYSNRSPLVCLTSLSWEPKA*PGMNSG Trigger: TCCGGAGTTCATACCTGGCCAGGCCTTTGGCTCCCA...CGATAATGATGTGAGACAGACCAGAGGACTGCGGTTACTGTAGGAGCCTCTCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000048490.13 ENSMUST00000191805.7 ENSMUST00000191872.6 |
||
3UTR CAA 72 bp | TTCCACATCTACACAGCAGCTGCAACTGCCTCTGACTaGGGAAAAGCAGTGTCCAGACCCACAGGCCTCACT | + |
Preference number: 4 (lower is better) Translates to: FHIYTAAATASD*GKAVSRPTGLT Trigger: AGTGAGGCCTGTGGGTCTGGACACTGCTTTTCCCAAGTCAGAGGCAGTTGCAGCTGCTGTGTAGATGTGGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026862.9 |
||
CDS-3UTR TCA 90 bp | GAAAGGAGAGGCTCCTACAGTAACCGCAGTCCTCTGGTCTGTCTCACATCATTACTCTGGCTGCTTGACTaGGCCTCATCCTCGCTGATG | + |
Preference number: 4 (lower is better) Translates to: ERRGSYSNRSPLVCLTSLLWLLD*ASSSLM Trigger: CATCAGCGAGGATGAGGCTCAGTCAAGCAGCCAGAG...TAATGATGTGAGACAGACCAGAGGACTGCGGTTACTGTAGGAGCCTCTCCTTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000048490.13 ENSMUST00000191805.7 ENSMUST00000191872.6 |
||
CDS-3UTR TCA 90 bp | TCCTCTGGTCTGTCTCACATCATTATCGTAAAGGTGGTTTTCTCCACTGCAGGCCTCTGGCTGCTTGACTaGGCCTCATCCTCGCTGATG | + |
Preference number: 4 (lower is better) Translates to: SSGLSHIIIVKVVFSTAGLWLLD*ASSSLM Trigger: CATCAGCGAGGATGAGGCTCAGTCAAGCAGCCAGAG...GCCTGCAGTGGAGAAAACCACCTTTACGATAATGATGTGAGACAGACCAGAGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000048490.13 ENSMUST00000191805.7 ENSMUST00000191872.6 |
||
CDS-3UTR CCA 90 bp | GTAAAGGTGGTTTTCTCCACTGCAGGCTGGCCCAACCTTCTCCACAAGGGGGTGGTTAACCAATTCACCTaGTGTTGGCCAGTTTGCCAT | + |
Preference number: 4 (lower is better) Translates to: VKVVFSTAGWPNLLHKGVVNQFT*CWPVCH Trigger: ATGGCAAACTGGCCAACACCAGGTGAATTGGTTAAC...CACCCCCTTGTGGAGAAGGTTGGGCCAGCCTGCAGTGGAGAAAACCACCTTTAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000048490.13 ENSMUST00000191805.7 ENSMUST00000191872.6 |
||
CDS-3UTR CCA 90 bp | GAAAGGAGAGGCTCCTACAGTAACCGCAGTCCTCTGGTCTGTCTCACATCATTAATCACCCTGACTGTATaGGAGCCAAAGGCCTGGCCA | + |
Preference number: 4 (lower is better) Translates to: ERRGSYSNRSPLVCLTSLITLTV*EPKAWP Trigger: TGGCCAGGCCTTTGGCTCCCATACAGTCAGGGTGAT...TAATGATGTGAGACAGACCAGAGGACTGCGGTTACTGTAGGAGCCTCTCCTTTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000048490.13 ENSMUST00000191805.7 ENSMUST00000191872.6 |
||
CDS-3UTR TCA 90 bp | TCCCCAATGATAACAATTAACTTTCCCACCATGAATGAAGTAGCCCGTGCAGCCCTCTGGCTGCTTGACTaGGCCTCATCCTCGCTGATG | + |
Preference number: 4 (lower is better) Translates to: SPMITINFPTMNEVARAALWLLD*ASSSLM Trigger: CATCAGCGAGGATGAGGCTCAGTCAAGCAGCCAGAG...GGCTGCACGGGCTACTTCATTCATGGTGGGAAAGTTAATTGTTATCATTGGGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000048490.13 ENSMUST00000191805.7 ENSMUST00000191872.6 |
||
CDS-3UTR GCA 90 bp | GAAAGGAGAGGCTCCTACAGTAACCGCAGTCCTCTGGTCTGTCTCACATCATTACTCTCTTCCTCTGGCTaGTTGACTGAGCCTCATCCT | + |
Preference number: 4 (lower is better) Translates to: ERRGSYSNRSPLVCLTSLLSSSG*LTEPHP Trigger: AGGATGAGGCTCAGTCAAGCAGCCAGAGGAAGAGAG...TAATGATGTGAGACAGACCAGAGGACTGCGGTTACTGTAGGAGCCTCTCCTTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000048490.13 ENSMUST00000191805.7 ENSMUST00000191872.6 |
||
CDS-3UTR CCA 90 bp | TTCAGAAAGTTCCACATCTACACAGCAGCTGCAACTGCCTCTGACTTGGGAAAACCTGTGGATTTCCCCTaGACACCGTCCTTGGGACTG | + |
Preference number: 4 (lower is better) Translates to: FRKFHIYTAAATASDLGKPVDFP*TPSLGL Trigger: CAGTCCCAAGGACGGTGTCCAGGGGAAATCCACAGG...TTTTCCCAAGTCAGAGGCAGTTGCAGCTGCTGTGTAGATGTGGAACTTTCTGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026862.9 |
||
CDS-3UTR CCA 90 bp | TATCGTAAAGGTGGTTTTCTCCACTGCAGGCTGGCCCAACCTTCTCCACAAGGGAAGCTCTGTAGAAAATaGCTGCTCAGTCCTTTCCCC | + |
Preference number: 4 (lower is better) Translates to: YRKGGFLHCRLAQPSPQGKLCRK*LLSPFP Trigger: GGGGAAAGGACTGAGCAGCCATTTTCTACAGAGCTT...CCCTTGTGGAGAAGGTTGGGCCAGCCTGCAGTGGAGAAAACCACCTTTACGATA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000048490.13 ENSMUST00000191805.7 ENSMUST00000191872.6 |
||
CDS-3UTR CCA 90 bp | ACAGTAACCGCAGTCCTCTGGTCTGTCTCACATCATTATCGTAAAGGTGGTTTTTGGGAGCCAAAGGCCTaGCCAGGTATGAACTCCGGA | + |
Preference number: 4 (lower is better) Translates to: TVTAVLWSVSHHYRKGGFWEPKA*PGMNSG Trigger: TCCGGAGTTCATACCTGGCCAGGCCTTTGGCTCCCA...AAAACCACCTTTACGATAATGATGTGAGACAGACCAGAGGACTGCGGTTACTGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000048490.13 ENSMUST00000191805.7 ENSMUST00000191872.6 |
||
CDS-3UTR TCA 90 bp | CAACCTTCTCCACAAGGGGGTGGGCGTAGACATTCTTGCACAGAAGACAGTATGGGACAATCAATCAACTaGGAGAAGTCTGTTTGTGGC | + |
Preference number: 4 (lower is better) Translates to: QPSPQGGGRRHSCTEDSMGQSIN*EKSVCG Trigger: GCCACAAACAGACTTCTCTCAGTTGATTGATTGTCC...CATACTGTCTTCTGTGCAAGAATGTCTACGCCCACCCCCTTGTGGAGAAGGTTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000048490.13 ENSMUST00000191805.7 ENSMUST00000191872.6 |
||
CDS-3UTR GCA 90 bp | AGGAGAGGCTCCTACAGTAACCGCAGTCCTCTGGTCTGTCTCACATCATTATCGCTTCCCGGTTCTCTTTaGTCTCACTGTTGCTTCTTT | + |
Preference number: 4 (lower is better) Translates to: RRGSYSNRSPLVCLTSLSLPGSL*SHCCFF Trigger: AAAGAAGCAACAGTGAGAGCAAAGAGAACCGGGAAG...CGATAATGATGTGAGACAGACCAGAGGACTGCGGTTACTGTAGGAGCCTCTCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000048490.13 ENSMUST00000191805.7 ENSMUST00000191872.6 |
||
CDS-3UTR CCA 90 bp | CCTTCTCCACAAGGGGGTGGGCGTAGACATTCTTGCACAGAAGACAGTATGGTCCCTCACTTCTCACACTaGACACTTCATCTTGATCAT | + |
Preference number: 4 (lower is better) Translates to: PSPQGGGRRHSCTEDSMVPHFSH*TLHLDH Trigger: ATGATCAAGATGAAGTGTCCAGTGTGAGAAGTGAGG...GACCATACTGTCTTCTGTGCAAGAATGTCTACGCCCACCCCCTTGTGGAGAAGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000048490.13 ENSMUST00000191805.7 ENSMUST00000191872.6 |
||
CDS-3UTR CCA 90 bp | TTTCAGGGAGTCACCTACTCCACTGTATATTCCGATCATATGACATCCAAGAGCATCACCCTGACTGTATaGGAGCCAAAGGCCTGGCCA | + |
Preference number: 4 (lower is better) Translates to: FQGVTYSTVYSDHMTSKSITLTV*EPKAWP Trigger: TGGCCAGGCCTTTGGCTCCCATACAGTCAGGGTGAT...GCTCTTGGATGTCATATGATCGGAATATACAGTGGAGTAGGTGACTCCCTGAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000048490.13 ENSMUST00000191805.7 ENSMUST00000191872.6 |
||
CDS-3UTR TCA 90 bp | GAAAGGAGAGGCTCCTACAGTAACCGCAGTCCTCTGGTCTGTCTCACATCATTAGGACAATCAATCAACTaGGAGAAGTCTGTTTGTGGC | + |
Preference number: 4 (lower is better) Translates to: ERRGSYSNRSPLVCLTSLGQSIN*EKSVCG Trigger: GCCACAAACAGACTTCTCTCAGTTGATTGATTGTCC...TAATGATGTGAGACAGACCAGAGGACTGCGGTTACTGTAGGAGCCTCTCCTTTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000048490.13 ENSMUST00000191805.7 ENSMUST00000191872.6 |
||
CDS-3UTR TCA 90 bp | CACAGAAGACAGTATGGTCACTCTCACTTCTGCAGCACGATTTGCTCTCATATTAGGCCTGGCCAGGTATaGACTCCGGACAATCAATCA | + |
Preference number: 4 (lower is better) Translates to: HRRQYGHSHFCSTICSHIRPGQV*TPDNQS Trigger: TGATTGATTGTCCGGAGTTCATACCTGGCCAGGCCT...AATATGAGAGCAAATCGTGCTGCAGAAGTGAGAGTGACCATACTGTCTTCTGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000048490.13 ENSMUST00000191805.7 ENSMUST00000191872.6 |
||
CDS-3UTR TCA 90 bp | TTTCAGGGAGTCACCTACTCCACTGTATATTCCGATCATATGACATCCAAGAGCAGGCCTGGCCAGGTATaGACTCCGGACAATCAATCA | + |
Preference number: 4 (lower is better) Translates to: FQGVTYSTVYSDHMTSKSRPGQV*TPDNQS Trigger: TGATTGATTGTCCGGAGTTCATACCTGGCCAGGCCT...GCTCTTGGATGTCATATGATCGGAATATACAGTGGAGTAGGTGACTCCCTGAAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000048490.13 ENSMUST00000191805.7 ENSMUST00000191872.6 |
||
CDS-3UTR CCA 90 bp | GAAAGGAGAGGCTCCTACAGTAACCGCAGTCCTCTGGTCTGTCTCACATCATTACAATTCACCTGGTGTTaGCCAGTTTGCCATATCACT | + |
Preference number: 4 (lower is better) Translates to: ERRGSYSNRSPLVCLTSLQFTWC*PVCHIT Trigger: AGTGATATGGCAAACTGGCCAACACCAGGTGAATTG...TAATGATGTGAGACAGACCAGAGGACTGCGGTTACTGTAGGAGCCTCTCCTTTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048490.13 |
||
CDS-3UTR CCA 90 bp | CTTCTCCACAAGGGGGTGGGCGTAGACATTCTTGCACAGAAGACAGTATGGTCACCTCACTTCTCACACTaGACACTTCATCTTGATCAT | + |
Preference number: 4 (lower is better) Translates to: LLHKGVGVDILAQKTVWSPHFSH*TLHLDH Trigger: ATGATCAAGATGAAGTGTCCAGTGTGAGAAGTGAGG...TGACCATACTGTCTTCTGTGCAAGAATGTCTACGCCCACCCCCTTGTGGAGAAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000048490.13 ENSMUST00000191805.7 ENSMUST00000191872.6 |
||
CDS-3UTR CCA 90 bp | TCCTCTGGTCTGTCTCACATCATTATCGTAAAGGTGGTTTTCTCCACTGCAGGCAAGCTCTGTAGAAAATaGCTGCTCAGTCCTTTCCCC | + |
Preference number: 4 (lower is better) Translates to: SSGLSHIIIVKVVFSTAGKLCRK*LLSPFP Trigger: GGGGAAAGGACTGAGCAGCCATTTTCTACAGAGCTT...GCCTGCAGTGGAGAAAACCACCTTTACGATAATGATGTGAGACAGACCAGAGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000048490.13 ENSMUST00000191805.7 ENSMUST00000191872.6 |
||
CDS-3UTR CCA 90 bp | CACATACACATTGAAGCCAATGTTGATTTCAAGAATACACGACGTTTGTGTACGGACAGAGGGTGGTCTTaGCCCATGGTCCCTGGACTC | + |
Preference number: 4 (lower is better) Translates to: HIHIEANVDFKNTRRLCTDRGWS*PMVPGL Trigger: GAGTCCAGGGACCATGGGCCAAGACCACCCTCTGTC...CGTACACAAACGTCGTGTATTCTTGAAATCAACATTGGCTTCAATGTGTATGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099121.10 |
||
CDS-3UTR GCA 90 bp | TCTCACATCATTATCGTAAAGGTGGTTTTCTCCACTGCAGGCTGGCCCAACCTTTGGTGTTGGCCAGTTTaGCATATCACTGAAGTCACT | + |
Preference number: 4 (lower is better) Translates to: SHIIIVKVVFSTAGWPNLWCWPV*HITEVT Trigger: AGTGACTTCAGTGATATGGCAAACTGGCCAACACCA...AAGGTTGGGCCAGCCTGCAGTGGAGAAAACCACCTTTACGATAATGATGTGAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048490.13 |
||
CDS-3UTR CCA 90 bp | TCTCACATCATTATCGTAAAGGTGGTTTTCTCCACTGCAGGCTGGCCCAACCTTGTTAACCAATTCACCTaGTGTTGGCCAGTTTGCCAT | + |
Preference number: 4 (lower is better) Translates to: SHIIIVKVVFSTAGWPNLVNQFT*CWPVCH Trigger: ATGGCAAACTGGCCAACACCAGGTGAATTGGTTAAC...AAGGTTGGGCCAGCCTGCAGTGGAGAAAACCACCTTTACGATAATGATGTGAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000048490.13 ENSMUST00000191805.7 ENSMUST00000191872.6 |
||
3UTR CAA 72 bp | AAAGACGCCATGGGATCCCCTGACGTCAAGCAGACCTaGTTTGTAGAATCAGGGAAAACATGTGGAGTTCAT | + |
Preference number: 4 (lower is better) Translates to: KDAMGSPDVKQT*FVESGKTCGVH Trigger: ATGAACTCCACATGTTTTCCCTGATTCTACAAACAAGGTCTGCTTGACGTCAGGGGATCCCATGGCGTCTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026862.9 |
||
CDS-3UTR TCA 90 bp | ATTCTTGCACAGAAGACAGTATGGTCACTCTCACTTCTGCAGCACGATTTGCTCGGACAATCAATCAACTaGGAGAAGTCTGTTTGTGGC | + |
Preference number: 4 (lower is better) Translates to: ILAQKTVWSLSLLQHDLLGQSIN*EKSVCG Trigger: GCCACAAACAGACTTCTCTCAGTTGATTGATTGTCC...GAGCAAATCGTGCTGCAGAAGTGAGAGTGACCATACTGTCTTCTGTGCAAGAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000048490.13 ENSMUST00000191805.7 ENSMUST00000191872.6 |
||
CDS-3UTR TCA 90 bp | GAAGCCAATGTTGATTTCAAGAATACACGACGTTTGTGTACGTATCTACTTCCCAAGCATTTGAACTGCTaGCAGAGGGTGGTCTTGGCC | + |
Preference number: 4 (lower is better) Translates to: EANVDFKNTRRLCTYLLPKHLNC*QRVVLA Trigger: GGCCAAGACCACCCTCTGTCAGCAGTTCAAATGCTT...GGGAAGTAGATACGTACACAAACGTCGTGTATTCTTGAAATCAACATTGGCTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099121.10 |
||
CDS-3UTR GCA 90 bp | TCCCCAATGATAACAATTAACTTTCCCACCATGAATGAAGTAGCCCGTGCAGCCCTTCCCGGTTCTCTTTaGTCTCACTGTTGCTTCTTT | + |
Preference number: 4 (lower is better) Translates to: SPMITINFPTMNEVARAALPGSL*SHCCFF Trigger: AAAGAAGCAACAGTGAGAGCAAAGAGAACCGGGAAG...GGCTGCACGGGCTACTTCATTCATGGTGGGAAAGTTAATTGTTATCATTGGGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000048490.13 ENSMUST00000191805.7 ENSMUST00000191872.6 |
||
CDS-3UTR GCA 90 bp | CCTTCTCCACAAGGGGGTGGGCGTAGACATTCTTGCACAGAAGACAGTATGGTCCTTTTCCTATTACTGTaGGTTGGTTTATTTGCTTCA | + |
Preference number: 4 (lower is better) Translates to: PSPQGGGRRHSCTEDSMVLFLLL*VGLFAS Trigger: TGAAGCAAATAAACCAACGCACAGTAATAGGAAAAG...GACCATACTGTCTTCTGTGCAAGAATGTCTACGCCCACCCCCTTGTGGAGAAGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000048490.13 ENSMUST00000191805.7 |
||
CDS-3UTR CCA 90 bp | GAAGCCAATGTTGATTTCAAGAATACACGACGTTTGTGTACGTATCTACTTCCCAGGCTCAGCAGCACTTaGTGGAGGAAGTGTATGGTG | + |
Preference number: 4 (lower is better) Translates to: EANVDFKNTRRLCTYLLPRLSST*WRKCMV Trigger: CACCATACACTTCCTCCACCAAGTGCTGCTGAGCCT...GGGAAGTAGATACGTACACAAACGTCGTGTATTCTTGAAATCAACATTGGCTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026862.9 ENSMUST00000099121.10 |
||
CDS-3UTR CCA 90 bp | AAAGGAGAGGCTCCTACAGTAACCGCAGTCCTCTGGTCTGTCTCACATCATTATCCTCACTTCTCACACTaGACACTTCATCTTGATCAT | + |
Preference number: 4 (lower is better) Translates to: KGEAPTVTAVLWSVSHHYPHFSH*TLHLDH Trigger: ATGATCAAGATGAAGTGTCCAGTGTGAGAAGTGAGG...ATAATGATGTGAGACAGACCAGAGGACTGCGGTTACTGTAGGAGCCTCTCCTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000048490.13 ENSMUST00000191805.7 ENSMUST00000191872.6 |
||
CDS-3UTR GCA 90 bp | AGGAGAGGCTCCTACAGTAACCGCAGTCCTCTGGTCTGTCTCACATCATTATCGCTTTTCCTATTACTGTaGGTTGGTTTATTTGCTTCA | + |
Preference number: 4 (lower is better) Translates to: RRGSYSNRSPLVCLTSLSLFLLL*VGLFAS Trigger: TGAAGCAAATAAACCAACGCACAGTAATAGGAAAAG...CGATAATGATGTGAGACAGACCAGAGGACTGCGGTTACTGTAGGAGCCTCTCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048490.13 ENSMUST00000191805.7 |
||
CDS-3UTR CCA 90 bp | GCCAATGTTGATTTCAAGAATACACGACGTTTGTGTACGTATCTACTTCCCTGGCTCAGCAGCACTTGGTaGAGGAAGTGTATGGTGAAT | + |
Preference number: 4 (lower is better) Translates to: ANVDFKNTRRLCTYLLPWLSSTW*RKCMVN Trigger: ATTCACCATACACTTCCTCCACCAAGTGCTGCTGAG...CCAGGGAAGTAGATACGTACACAAACGTCGTGTATTCTTGAAATCAACATTGGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026862.9 ENSMUST00000099121.10 |
||
CDS-3UTR CCA 90 bp | ACATACACATTGAAGCCAATGTTGATTTCAAGAATACACGACGTTTGTGTACGTAGGCTCAGCAGCACTTaGTGGAGGAAGTGTATGGTG | + |
Preference number: 4 (lower is better) Translates to: TYTLKPMLISRIHDVCVRRLSST*WRKCMV Trigger: CACCATACACTTCCTCCACCAAGTGCTGCTGAGCCT...ACGTACACAAACGTCGTGTATTCTTGAAATCAACATTGGCTTCAATGTGTATGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026862.9 ENSMUST00000099121.10 |
||
CDS-3UTR TCA 90 bp | AGAAGATCTATCCACATACACATTGAAGCCAATGTTGATTTCAAGAATACACGACTGGACCTTTGTGAATaGCTGAGGCGGGTAGCTGTA | + |
Preference number: 4 (lower is better) Translates to: RRSIHIHIEANVDFKNTRLDLCE*LRRVAV Trigger: TACAGCTACCCGCCTCAGTCATTCACAAAGGTCCAG...TCGTGTATTCTTGAAATCAACATTGGCTTCAATGTGTATGTGGATAGATCTTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099121.10 |
||
CDS-3UTR CCA 90 bp | ACATACACATTGAAGCCAATGTTGATTTCAAGAATACACGACGTTTGTGTACGTCTCAGCAGCACTTGGTaGAGGAAGTGTATGGTGAAT | + |
Preference number: 4 (lower is better) Translates to: TYTLKPMLISRIHDVCVRLSSTW*RKCMVN Trigger: ATTCACCATACACTTCCTCCACCAAGTGCTGCTGAG...ACGTACACAAACGTCGTGTATTCTTGAAATCAACATTGGCTTCAATGTGTATGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026862.9 ENSMUST00000099121.10 |
||
3UTR CAA 72 bp | ATTGAAGCCAATGTTGATTTCAAGAATACACGACGTTaGTGTACGTATCTACTTCCCTGGTACTTCAACCCT | + |
Preference number: 4 (lower is better) Translates to: IEANVDFKNTRR*CTYLLPWYFNP Trigger: AGGGTTGAAGTACCAGGGAAGTAGATACGTACACAAACGTCGTGTATTCTTGAAATCAACATTGGCTTCAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026862.9 ENSMUST00000099121.10 |
||
CDS-3UTR TCA 90 bp | TTGAAGCCAATGTTGATTTCAAGAATACACGACGTTTGTGTACGTATCTACTTCCTCCCCAGAAGTAGATaGATGTCTTTGTCTTCCAAA | + |
Preference number: 4 (lower is better) Translates to: LKPMLISRIHDVCVRIYFLPRSR*MSLSSK Trigger: TTTGGAAGACAAAGACATTCATCTACTTCTGGGGAG...GAAGTAGATACGTACACAAACGTCGTGTATTCTTGAAATCAACATTGGCTTCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026862.9 ENSMUST00000099121.10 |
||
CDS-3UTR TCA 90 bp | ATTGAAGCCAATGTTGATTTCAAGAATACACGACGTTTGTGTACGTATCTACTTCTCCCCAGAAGTAGATaGATGTCTTTGTCTTCCAAA | + |
Preference number: 4 (lower is better) Translates to: IEANVDFKNTRRLCTYLLLPRSR*MSLSSK Trigger: TTTGGAAGACAAAGACATTCATCTACTTCTGGGGAG...AAGTAGATACGTACACAAACGTCGTGTATTCTTGAAATCAACATTGGCTTCAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026862.9 ENSMUST00000099121.10 |
||
CDS-3UTR GCA 90 bp | TCCACATACACATTGAAGCCAATGTTGATTTCAAGAATACACGACGTTTGTGTATATCTGTGGTACAATTaGTGGGTAAAGCCATTTTCC | + |
Preference number: 4 (lower is better) Translates to: STYTLKPMLISRIHDVCVYLWYN*WVKPFS Trigger: GGAAAATGGCTTTACCCAGCAATTGTACCACAGATA...TACACAAACGTCGTGTATTCTTGAAATCAACATTGGCTTCAATGTGTATGTGGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099121.10 |
||
CDS-3UTR CCA 90 bp | ATTGAAGCCAATGTTGATTTCAAGAATACACGACGTTTGTGTACGTATCTACTTATTTTCCAATTAAAGTaGTCTCTGAGGAAGAAGGAC | + |
Preference number: 4 (lower is better) Translates to: IEANVDFKNTRRLCTYLLIFQLK*SLRKKD Trigger: GTCCTTCTTCCTCAGAGACCACTTTAATTGGAAAAT...AAGTAGATACGTACACAAACGTCGTGTATTCTTGAAATCAACATTGGCTTCAAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099121.10 |
||
CDS GCA 90 bp | GTTCCCCTTTGGCGGCGGCGGCGGCGGCTTGTCCTCCGGGCCGGCTaGCGCTGGGTCCTCGCGGGCGTCCTCCGGTGGGTCCCGCGGTGC | + |
Preference number: 5 (lower is better) Translates to: VPLWRRRRRLVLRAG*RWVLAGVLRWVPRC Trigger: GCACCGCGGGACCCACCGGAGGACGCCCGCGAGGACCCAGCGGCAGCCGGCCCGGAGGACAAGCCGCCGCCGCCGCCGCCAAAGGGGAAC 80% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048490.13 |
||
CDS-3UTR CAA 90 bp | AGGTGGTTTTCTCCACTGCAGGCTGGCCCAACCTTCTCCACAAGGGGGTGGGCGGCTTCCCGGTTCTCTTaGCTCTCACTGTTGCTTCTT | + |
Preference number: 5 (lower is better) Translates to: RWFSPLQAGPTFSTRGWAASRFS*LSLLLL Trigger: AAGAAGCAACAGTGAGAGCAAAGAGAACCGGGAAGC...CGCCCACCCCCTTGTGGAGAAGGTTGGGCCAGCCTGCAGTGGAGAAAACCACCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000048490.13 ENSMUST00000191805.7 ENSMUST00000191872.6 |
||
CDS-3UTR CAA 90 bp | GTAAAGGTGGTTTTCTCCACTGCAGGCTGGCCCAACCTTCTCCACAAGGGGGTGTCTTCCTCTGGCTGCTaGACTGAGCCTCATCCTCGC | + |
Preference number: 5 (lower is better) Translates to: VKVVFSTAGWPNLLHKGVSSSGC*TEPHPR Trigger: GCGAGGATGAGGCTCAGTCAAGCAGCCAGAGGAAGA...CACCCCCTTGTGGAGAAGGTTGGGCCAGCCTGCAGTGGAGAAAACCACCTTTAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000048490.13 ENSMUST00000191805.7 ENSMUST00000191872.6 |
||
CDS CCA 90 bp | GTCCTTGGGACTGCAGTTCCCTGCAGATGCAGGCTCAGCAGCACTTaGTGGAGGAAGTGTATGGTGAATCCTCTCCTCCCCAGAAGTAGA | + |
Preference number: 5 (lower is better) Translates to: VLGTAVPCRCRLSST*WRKCMVNPLLPRSR Trigger: TCTACTTCTGGGGAGGAGAGGATTCACCATACACTTCCTCCACCAAGTGCTGCTGAGCCTGCATCTGCAGGGAACTGCAGTCCCAAGGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026862.9 ENSMUST00000099121.10 |
||
CDS-3UTR CAA 90 bp | GCCCAACCTTCTCCACAAGGGGGTGGGCGTAGACATTCTTGCACAGAAGACAGTCCCGCTTTTATAATTTaGGGGGAACTGAGCTCGGCC | + |
Preference number: 5 (lower is better) Translates to: AQPSPQGGGRRHSCTEDSPAFII*GELSSA Trigger: GGCCGAGCTCAGTTCCCCCAAAATTATAAAAGCGGG...ACTGTCTTCTGTGCAAGAATGTCTACGCCCACCCCCTTGTGGAGAAGGTTGGGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000048490.13 |
||
CDS-3UTR CAA 90 bp | CCTTCTCCACAAGGGGGTGGGCGTAGACATTCTTGCACAGAAGACAGTATGGTCGCTTCCCGGTTCTCTTaGCTCTCACTGTTGCTTCTT | + |
Preference number: 5 (lower is better) Translates to: PSPQGGGRRHSCTEDSMVASRFS*LSLLLL Trigger: AAGAAGCAACAGTGAGAGCAAAGAGAACCGGGAAGC...GACCATACTGTCTTCTGTGCAAGAATGTCTACGCCCACCCCCTTGTGGAGAAGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000048490.13 ENSMUST00000191805.7 ENSMUST00000191872.6 |
||
CDS-3UTR CAA 90 bp | TTTCAGGGAGTCACCTACTCCACTGTATATTCCGATCATATGACATCCAAGAGCTGCTGCGGCAGCTTCTaGGTCCACGGGTTCCCCTTT | + |
Preference number: 5 (lower is better) Translates to: FQGVTYSTVYSDHMTSKSCCGSF*VHGFPF Trigger: AAAGGGGAACCCGTGGACCAAGAAGCTGCCGCAGCA...GCTCTTGGATGTCATATGATCGGAATATACAGTGGAGTAGGTGACTCCCTGAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048490.13 |
||
CDS-3UTR CAA 90 bp | TCCCCAATGATAACAATTAACTTTCCCACCATGAATGAAGTAGCCCGTGCAGCCTCTTCCTCTGGCTGCTaGACTGAGCCTCATCCTCGC | + |
Preference number: 5 (lower is better) Translates to: SPMITINFPTMNEVARAASSSGC*TEPHPR Trigger: GCGAGGATGAGGCTCAGTCAAGCAGCCAGAGGAAGA...GGCTGCACGGGCTACTTCATTCATGGTGGGAAAGTTAATTGTTATCATTGGGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000048490.13 ENSMUST00000191805.7 ENSMUST00000191872.6 |
||
CDS-3UTR CAA 90 bp | TCCTCTGGTCTGTCTCACATCATTATCGTAAAGGTGGTTTTCTCCACTGCAGGCGCTTCCCGGTTCTCTTaGCTCTCACTGTTGCTTCTT | + |
Preference number: 5 (lower is better) Translates to: SSGLSHIIIVKVVFSTAGASRFS*LSLLLL Trigger: AAGAAGCAACAGTGAGAGCAAAGAGAACCGGGAAGC...GCCTGCAGTGGAGAAAACCACCTTTACGATAATGATGTGAGACAGACCAGAGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000048490.13 ENSMUST00000191805.7 ENSMUST00000191872.6 |
||
CDS-3UTR CAA 90 bp | TATCGTAAAGGTGGTTTTCTCCACTGCAGGCTGGCCCAACCTTCTCCACAAGGGACTGGACACTTCATCTaGATCATCTCTCTTTTCTCT | + |
Preference number: 5 (lower is better) Translates to: YRKGGFLHCRLAQPSPQGTGHFI*IISLFS Trigger: AGAGAAAAGAGAGATGATCAAGATGAAGTGTCCAGT...CCCTTGTGGAGAAGGTTGGGCCAGCCTGCAGTGGAGAAAACCACCTTTACGATA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000048490.13 ENSMUST00000191805.7 ENSMUST00000191872.6 |
||
CDS-3UTR CAA 90 bp | GAAGCCAATGTTGATTTCAAGAATACACGACGTTTGTGTACGTATCTACTTCCCCAGGCTCAGCAGCACTaGGTGGAGGAAGTGTATGGT | + |
Preference number: 5 (lower is better) Translates to: EANVDFKNTRRLCTYLLPQAQQH*VEEVYG Trigger: ACCATACACTTCCTCCACCAAGTGCTGCTGAGCCTG...GGGAAGTAGATACGTACACAAACGTCGTGTATTCTTGAAATCAACATTGGCTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026862.9 ENSMUST00000099121.10 |
||
CDS-3UTR CAA 90 bp | AGAAGATCTATCCACATACACATTGAAGCCAATGTTGATTTCAAGAATACACGACCCTGGACACCGTCCTaGGGACTGCAGTTCCCTGCA | + |
Preference number: 5 (lower is better) Translates to: RRSIHIHIEANVDFKNTRPWTPS*GLQFPA Trigger: TGCAGGGAACTGCAGTCCCAAGGACGGTGTCCAGGG...TCGTGTATTCTTGAAATCAACATTGGCTTCAATGTGTATGTGGATAGATCTTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026862.9 ENSMUST00000099121.10 |
||
CDS-3UTR CAA 90 bp | GGGGGTGGGCGTAGACATTCTTGCACAGAAGACAGTATGGTCACTCTCACTTCTACTGGACACTTCATCTaGATCATCTCTCTTTTCTCT | + |
Preference number: 5 (lower is better) Translates to: GGGRRHSCTEDSMVTLTSTGHFI*IISLFS Trigger: AGAGAAAAGAGAGATGATCAAGATGAAGTGTCCAGT...AGAAGTGAGAGTGACCATACTGTCTTCTGTGCAAGAATGTCTACGCCCACCCCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000048490.13 ENSMUST00000191805.7 ENSMUST00000191872.6 |
||
CDS-3UTR CAA 90 bp | CACATACACATTGAAGCCAATGTTGATTTCAAGAATACACGACGTTTGTGTACGCAGGCTCAGCAGCACTaGGTGGAGGAAGTGTATGGT | + |
Preference number: 5 (lower is better) Translates to: HIHIEANVDFKNTRRLCTQAQQH*VEEVYG Trigger: ACCATACACTTCCTCCACCAAGTGCTGCTGAGCCTG...CGTACACAAACGTCGTGTATTCTTGAAATCAACATTGGCTTCAATGTGTATGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026862.9 ENSMUST00000099121.10 |
||
CDS-3UTR CAA 90 bp | TCCTCTGGTCTGTCTCACATCATTATCGTAAAGGTGGTTTTCTCCACTGCAGGCAAGTCACTAGCCTTGTaGGATTTCTTTGTCTTGAGT | + |
Preference number: 5 (lower is better) Translates to: SSGLSHIIIVKVVFSTAGKSLAL*DFFVLS Trigger: ACTCAAGACAAAGAAATCCAACAAGGCTAGTGACTT...GCCTGCAGTGGAGAAAACCACCTTTACGATAATGATGTGAGACAGACCAGAGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048490.13 |
||
CDS-3UTR CAA 90 bp | CCAATGTTGATTTCAAGAATACACGACGTTTGTGTACGTATCTACTTCCCTGGTAGGCTGGGTCTTAGATaGAGAATATTCCAGATAGGC | + |
Preference number: 5 (lower is better) Translates to: PMLISRIHDVCVRIYFPGRLGLR*RIFQIG Trigger: GCCTATCTGGAATATTCTCAATCTAAGACCCAGCCT...ACCAGGGAAGTAGATACGTACACAAACGTCGTGTATTCTTGAAATCAACATTGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026862.9 ENSMUST00000099121.10 |
||
CDS-3UTR CAA 90 bp | TATTTACATGGTATTTCAGGGAGTCACCTACTCCACTGTATATTCCGATCATATCCAATTCACCTGGTGTaGGCCAGTTTGCCATATCAC | + |
Preference number: 5 (lower is better) Translates to: YLHGISGSHLLHCIFRSYPIHLV*ASLPYH Trigger: GTGATATGGCAAACTGGCCAACACCAGGTGAATTGG...ATATGATCGGAATATACAGTGGAGTAGGTGACTCCCTGAAATACCATGTAAATA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048490.13 |
||
CDS-3UTR CAA 90 bp | ACAGTAACCGCAGTCCTCTGGTCTGTCTCACATCATTATCGTAAAGGTGGTTTTACTGGACACTTCATCTaGATCATCTCTCTTTTCTCT | + |
Preference number: 5 (lower is better) Translates to: TVTAVLWSVSHHYRKGGFTGHFI*IISLFS Trigger: AGAGAAAAGAGAGATGATCAAGATGAAGTGTCCAGT...AAAACCACCTTTACGATAATGATGTGAGACAGACCAGAGGACTGCGGTTACTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000048490.13 ENSMUST00000191805.7 ENSMUST00000191872.6 |
||
CDS-3UTR CAA 90 bp | GCCAATGTTGATTTCAAGAATACACGACGTTTGTGTACGTATCTACTTCCCTGGACCTGTAATTCTCTTTaGCATCTTCCCAAGCAAGTT | + |
Preference number: 5 (lower is better) Translates to: ANVDFKNTRRLCTYLLPWTCNSL*HLPKQV Trigger: AACTTGCTTGGGAAGATGCAAAAGAGAATTACAGGT...CCAGGGAAGTAGATACGTACACAAACGTCGTGTATTCTTGAAATCAACATTGGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099121.10 |
||
CDS-3UTR CAA 90 bp | TTGAAGCCAATGTTGATTTCAAGAATACACGACGTTTGTGTACGTATCTACTTCAGGCTGGGTCTTAGATaGAGAATATTCCAGATAGGC | + |
Preference number: 5 (lower is better) Translates to: LKPMLISRIHDVCVRIYFRLGLR*RIFQIG Trigger: GCCTATCTGGAATATTCTCAATCTAAGACCCAGCCT...GAAGTAGATACGTACACAAACGTCGTGTATTCTTGAAATCAACATTGGCTTCAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026862.9 ENSMUST00000099121.10 |
||
CDS-3UTR CAA 90 bp | ACATACACATTGAAGCCAATGTTGATTTCAAGAATACACGACGTTTGTGTACGTATATCTGTGGTACAATaGCTGGGTAAAGCCATTTTC | + |
Preference number: 5 (lower is better) Translates to: TYTLKPMLISRIHDVCVRISVVQ*LGKAIF Trigger: GAAAATGGCTTTACCCAGCAATTGTACCACAGATAT...ACGTACACAAACGTCGTGTATTCTTGAAATCAACATTGGCTTCAATGTGTATGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099121.10 |
||
CDS-3UTR CAA 90 bp | ATTGAAGCCAATGTTGATTTCAAGAATACACGACGTTTGTGTACGTATCTACTTATCTTCCCAAGCAAGTaGTCTAAATTCCTCATACAT | + |
Preference number: 5 (lower is better) Translates to: IEANVDFKNTRRLCTYLLIFPSK*SKFLIH Trigger: ATGTATGAGGAATTTAGACAACTTGCTTGGGAAGAT...AAGTAGATACGTACACAAACGTCGTGTATTCTTGAAATCAACATTGGCTTCAAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099121.10 |
||
CDS CCA 72 bp | GTGCTGCGGCAGCTTCTTGGTCCACGGGTTCCCCTTTaGCGGCGGCGGCGGCGGCTTGTCCTCCGGGCCGGC | + |
Preference number: 6 (lower is better) Translates to: VLRQLLGPRVPL*RRRRRLVLRAG Trigger: GCCGGCCCGGAGGACAAGCCGCCGCCGCCGCCGCCAAAGGGGAACCCGTGGACCAAGAAGCTGCCGCAGCAC 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048490.13 |
||
CDS GCA 72 bp | CCTCCGGGGAGTCCTGAGCGGGCGACGGCACGCCGGTaGCCACGGTGGACAGGTGCTGCGGCAGCTTCTTGG | + |
Preference number: 6 (lower is better) Translates to: PPGSPERATARR*PRWTGAAAASW Trigger: CCAAGAAGCTGCCGCAGCACCTGTCCACCGTGGGCACCGGCGTGCCGTCGCCCGCTCAGGACTCCCCGGAGG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048490.13 |
||
CDS GCA 72 bp | GCGGGCGACGGCACGCCGGTGCCCACGGTGGACAGGTaGTGCGGCAGCTTCTTGGTCCACGGGTTCCCCTTT | + |
Preference number: 6 (lower is better) Translates to: AGDGTPVPTVDR*CGSFLVHGFPF Trigger: AAAGGGGAACCCGTGGACCAAGAAGCTGCCGCAGCACCTGTCCACCGTGGGCACCGGCGTGCCGTCGCCCGC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048490.13 |
||
CDS CAA 72 bp | CACTGGGCTCCTGTGGATTTCCCCTGGACACCGTCCTaGGGACTGCAGTTCCCTGCAGATGCAGGCTCAGCA | + |
Preference number: 6 (lower is better) Translates to: HWAPVDFPWTPS*GLQFPADAGSA Trigger: TGCTGAGCCTGCATCTGCAGGGAACTGCAGTCCCAAGGACGGTGTCCAGGGGAAATCCACAGGAGCCCAGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026862.9 ENSMUST00000099121.10 |
||
CDS GCA 72 bp | TTTCCCCTGGACACCGTCCTTGGGACTGCAGTTCCCTaGAGATGCAGGCTCAGCAGCACTTGGTGGAGGAAG | + |
Preference number: 6 (lower is better) Translates to: FPLDTVLGTAVP*RCRLSSTWWRK Trigger: CTTCCTCCACCAAGTGCTGCTGAGCCTGCATCTGCAGGGAACTGCAGTCCCAAGGACGGTGTCCAGGGGAAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026862.9 ENSMUST00000099121.10 |
||
CDS GCA 72 bp | CTCCTGTGGATTTCCCCTGGACACCGTCCTTGGGACTaGAGTTCCCTGCAGATGCAGGCTCAGCAGCACTTG | + |
Preference number: 6 (lower is better) Translates to: LLWISPGHRPWD*SSLQMQAQQHL Trigger: CAAGTGCTGCTGAGCCTGCATCTGCAGGGAACTGCAGTCCCAAGGACGGTGTCCAGGGGAAATCCACAGGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026862.9 ENSMUST00000099121.10 |
||
CDS TCA 72 bp | GTGGCACACCTTCTGAAGGTGAAGCATTTGAACTGCTaGCAGAGGGTGGTCTTGGCCCATGGTCCCTGGACT | + |
Preference number: 6 (lower is better) Translates to: VAHLLKVKHLNC*QRVVLAHGPWT Trigger: AGTCCAGGGACCATGGGCCAAGACCACCCTCTGTCAGCAGTTCAAATGCTTCACCTTCAGAAGGTGTGCCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099121.10 |
||
CDS CAA 90 bp | ACCTCGGATGGTACCACCCTCACTTCTCACACTGGACACTTCATCTaGATCATCTCTCTTTTCTCTCTCCCGTCTCCAACCTCTCTTCCT | + |
Preference number: 6 (lower is better) Translates to: TSDGTTLTSHTGHFI*IISLFSLPSPTSLP Trigger: AGGAAGAGAGGTTGGAGACGGGAGAGAGAAAAGAGAGATGATCAAGATGAAGTGTCCAGTGTGAGAAGTGAGGGTGGTACCATCCGAGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000191872.6 |
||
CDS CCA 72 bp | GATAACACTCTGAGACCCCGTGTTAACCAATTCACCTaGTGTTGGCCAGTTTGCCATATCACTGAAGTCACT | + |
Preference number: 6 (lower is better) Translates to: DNTLRPRVNQFT*CWPVCHITEVT Trigger: AGTGACTTCAGTGATATGGCAAACTGGCCAACACCAGGTGAATTGGTTAACACGGGGTCTCAGAGTGTTATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048490.13 |
||
CDS TCA 72 bp | AAGTGTATGGTGAATCCTCTCCTCCCCAGAAGTAGATaGATGTCTTTGTCTTCCAAATTCCTCACTAGAAGG | + |
Preference number: 6 (lower is better) Translates to: KCMVNPLLPRSR*MSLSSKFLTRR Trigger: CCTTCTAGTGAGGAATTTGGAAGACAAAGACATTCATCTACTTCTGGGGAGGAGAGGATTCACCATACACTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026862.9 ENSMUST00000099121.10 |