RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LARP1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000037331

Ensembl transcript IDs: ENSMUST00000071487.13, ENSMUST00000178636.2

Found 370 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TGGAGCAGGGCCAGGCAGCCTTCCCTCCGAGTAGCAAATCTGCTCTaGGGCTCACAGGTTTGCAAACCACCATCTGCCCCTTGCTGGGGC +
Preference number: 1 (lower is better)
Translates to: WSRARQPSLRVANLL*GSQVCKPPSAPCWG
Trigger: GCCCCAGCAAGGGGCAGATGGTGGTTTGCAAACCTGTGAGCCTCAGAGCAGATTTGCTACTCGGAGGGAAGGCTGCCTGGCCCTGCTCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR CCA 90 bp GGCGGTTCCATTTGGCAGGCTGTCTGTCTTAGGTCTTGGATTCCATaGGAAGATGGTGATGGGGAAGTGGCTTGCTCTGGTGCCCCACCC +
Preference number: 1 (lower is better)
Translates to: GGSIWQAVCLRSWIP*EDGDGEVACSGAPP
Trigger: GGGTGGGGCACCAGAGCAAGCCACTTCCCCATCACCATCTTCCCATGGAATCCAAGACCTAAGACAGACAGCCTGCCAAATGGAACCGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR GCA 90 bp AGTAGCAAATCTGCTCTGAGGCTCACAGGTTTGCAAACCACCATCTaGCCCTTGCTGGGGCCAGGTGGATGTCTAACCCTGCACAGGCAG +
Preference number: 1 (lower is better)
Translates to: SSKSALRLTGLQTTI*PLLGPGGCLTLHRQ
Trigger: CTGCCTGTGCAGGGTTAGACATCCACCTGGCCCCAGCAAGGGGCAGATGGTGGTTTGCAAACCTGTGAGCCTCAGAGCAGATTTGCTACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR CCA 90 bp TTACCCTCCTCAGCTCCTGGTGACAGCAGCCTCCAGCCACTCCTCTaGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAG +
Preference number: 1 (lower is better)
Translates to: LPSSAPGDSSLQPLL*HLKCSSGSLAFEEK
Trigger: CTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCCAGAGGAGTGGCTGGAGGCTGCTGTCACCAGGAGCTGAGGAGGGTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR TCA 90 bp GACCACACCCCCTTGTGCCACCTAGGTCCAAGTGTAGGGTTAGCATaGAGTCTCCCAGCCTGTGTGCTCAGTCCTTCATTACCCTCCTCA +
Preference number: 1 (lower is better)
Translates to: DHTPLCHLGPSVGLA*SLPACVLSPSLPSS
Trigger: TGAGGAGGGTAATGAAGGACTGAGCACACAGGCTGGGAGACTTCATGCTAACCCTACACTTGGACCTAGGTGGCACAAGGGGGTGTGGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR CCA 90 bp CTAAGCTGTGGACATCAGTGGGTGTTCAACCCCTTGTTCTGGAGTTaGGGAGATGTGCACACTGAGGACAAGTGTGTACCAGGCAAGACC +
Preference number: 1 (lower is better)
Translates to: LSCGHQWVFNPLFWS*GDVHTEDKCVPGKT
Trigger: GGTCTTGCCTGGTACACACTTGTCCTCAGTGTGCACATCTCCCCAACTCCAGAACAAGGGGTTGAACACCCACTGATGTCCACAGCTTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR CCA 90 bp ACAGACCTAAGCTGTGGACATCAGTGGGTGTTCAACCCCTTGTTCTaGAGTTGGGGAGATGTGCACACTGAGGACAAGTGTGTACCAGGC +
Preference number: 1 (lower is better)
Translates to: TDLSCGHQWVFNPLF*SWGDVHTEDKCVPG
Trigger: GCCTGGTACACACTTGTCCTCAGTGTGCACATCTCCCCAACTCCAGAACAAGGGGTTGAACACCCACTGATGTCCACAGCTTAGGTCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR CCA 90 bp GAGGATGAAGGCGGTTCCATTTGGCAGGCTGTCTGTCTTAGGTCTTaGATTCCATGGGAAGATGGTGATGGGGAAGTGGCTTGCTCTGGT +
Preference number: 1 (lower is better)
Translates to: EDEGGSIWQAVCLRS*IPWEDGDGEVACSG
Trigger: ACCAGAGCAAGCCACTTCCCCATCACCATCTTCCCATGGAATCCAAGACCTAAGACAGACAGCCTGCCAAATGGAACCGCCTTCATCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR CCA 90 bp TCCTTGAGGTCAAAGGTCGTTAAGGTTAGACACAGACCTAAGCTGTaGACATCAGTGGGTGTTCAACCCCTTGTTCTGGAGTTGGGGAGA +
Preference number: 1 (lower is better)
Translates to: SLRSKVVKVRHRPKL*TSVGVQPLVLELGR
Trigger: TCTCCCCAACTCCAGAACAAGGGGTTGAACACCCACTGATGTCCACAGCTTAGGTCTGTGTCTAACCTTAACGACCTTTGACCTCAAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR TCA 90 bp GTGGGTGTTCAACCCCTTGTTCTGGAGTTGGGGAGATGTGCACACTaGGGACAAGTGTGTACCAGGCAAGACCAATTATGTTTACAACAG +
Preference number: 1 (lower is better)
Translates to: VGVQPLVLELGRCAH*GQVCTRQDQLCLQQ
Trigger: CTGTTGTAAACATAATTGGTCTTGCCTGGTACACACTTGTCCTCAGTGTGCACATCTCCCCAACTCCAGAACAAGGGGTTGAACACCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR GCA 90 bp GACATCAGTGGGTGTTCAACCCCTTGTTCTGGAGTTGGGGAGATGTaGACACTGAGGACAAGTGTGTACCAGGCAAGACCAATTATGTTT +
Preference number: 1 (lower is better)
Translates to: DISGCSTPCSGVGEM*TLRTSVYQARPIMF
Trigger: AAACATAATTGGTCTTGCCTGGTACACACTTGTCCTCAGTGTGCACATCTCCCCAACTCCAGAACAAGGGGTTGAACACCCACTGATGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR CCA 90 bp GAGCAGGGCCAGGCAGCCTTCCCTCCGAGTAGCAAATCTGCTCTGAGGCTCACACGGAGCAGAGCTGAGTaGGCCTGGAGAGGCGACAGC +
Preference number: 2 (lower is better)
Translates to: EQGQAAFPPSSKSALRLTRSRAE*AWRGDS
Trigger: GCTGTCGCCTCTCCAGGCCCACTCAGCTCTGCTCCG...TGTGAGCCTCAGAGCAGATTTGCTACTCGGAGGGAAGGCTGCCTGGCCCTGCTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR TCA 90 bp GGCTCAAAGTTTTCTTCTGCCTCTGCCGTAACCATGGCTGGAGGAGAGGGTGGGCTCCTCAGCTCCTGGTaGCAGCAGCCTCCAGCCACT +
Preference number: 2 (lower is better)
Translates to: GSKFSSASAVTMAGGEGGLLSSW*QQPPAT
Trigger: AGTGGCTGGAGGCTGCTGTCACCAGGAGCTGAGGAG...CCCACCCTCTCCTCCAGCCATGGTTACGGCAGAGGCAGAAGAAAACTTTGAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR GCA 90 bp GAGCAGGGCCAGGCAGCCTTCCCTCCGAGTAGCAAATCTGCTCTGAGGCTCACATTGCAAACCACCATCTaGCCCTTGCTGGGGCCAGGT +
Preference number: 2 (lower is better)
Translates to: EQGQAAFPPSSKSALRLTLQTTI*PLLGPG
Trigger: ACCTGGCCCCAGCAAGGGGCAGATGGTGGTTTGCAA...TGTGAGCCTCAGAGCAGATTTGCTACTCGGAGGGAAGGCTGCCTGGCCCTGCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR CCA 90 bp GGCTCAAAGTTTTCTTCTGCCTCTGCCGTAACCATGGCTGGAGGAGAGGGTGGGGAGGGATGGGGTACTTaGAGGCTCCTGCCCAGGAGC +
Preference number: 2 (lower is better)
Translates to: GSKFSSASAVTMAGGEGGEGWGT*RLLPRS
Trigger: GCTCCTGGGCAGGAGCCTCCAAGTACCCCATCCCTC...CCCACCCTCTCCTCCAGCCATGGTTACGGCAGAGGCAGAAGAAAACTTTGAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR TCA 90 bp GAGCAGGGCCAGGCAGCCTTCCCTCCGAGTAGCAAATCTGCTCTGAGGCTCACATCCATGGGAAGATGGTaGTGGGGAAGTGGCTTGCTC +
Preference number: 2 (lower is better)
Translates to: EQGQAAFPPSSKSALRLTSMGRW*WGSGLL
Trigger: GAGCAAGCCACTTCCCCATCACCATCTTCCCATGGA...TGTGAGCCTCAGAGCAGATTTGCTACTCGGAGGGAAGGCTGCCTGGCCCTGCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR GCA 90 bp GAGCAGGGCCAGGCAGCCTTCCCTCCGAGTAGCAAATCTGCTCTGAGGCTCACACTTGTCAGCCTGGGATaGTGTGTCCCAGTCCCAACT +
Preference number: 2 (lower is better)
Translates to: EQGQAAFPPSSKSALRLTLVSLG*CVPVPT
Trigger: AGTTGGGACTGGGACACAGCATCCCAGGCTGACAAG...TGTGAGCCTCAGAGCAGATTTGCTACTCGGAGGGAAGGCTGCCTGGCCCTGCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR CAA 90 bp AAATCTGCTCTGAGGCTCACAGGTTTGCAAACCACCATCTGCCCCTaGCTGGGGCCAGGTGGATGTCTAACCCTGCACAGGCAGAGGATG +
Preference number: 2 (lower is better)
Translates to: KSALRLTGLQTTICP*LGPGGCLTLHRQRM
Trigger: CATCCTCTGCCTGTGCAGGGTTAGACATCCACCTGGCCCCAGCAAGGGGCAGATGGTGGTTTGCAAACCTGTGAGCCTCAGAGCAGATTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR GCA 90 bp GAGCAGGGCCAGGCAGCCTTCCCTCCGAGTAGCAAATCTGCTCTGAGGCTCACACCACATATACCTTCCTaGCATGGGGCTTCACCAAAC +
Preference number: 2 (lower is better)
Translates to: EQGQAAFPPSSKSALRLTPHIPS*HGASPN
Trigger: GTTTGGTGAAGCCCCATGGCAGGAAGGTATATGTGG...TGTGAGCCTCAGAGCAGATTTGCTACTCGGAGGGAAGGCTGCCTGGCCCTGCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR GCA 90 bp GTCCTCAATGCCCTTTCCCTCATGTCCAGACCTTCCAAGCAGCTTGCCTTCTTTCCACCATCTGCCCCTTaGTGGGGCCAGGTGGATGTC +
Preference number: 2 (lower is better)
Translates to: VLNALSLMSRPSKQLAFFPPSAP*WGQVDV
Trigger: GACATCCACCTGGCCCCAGCAAGGGGCAGATGGTGG...AAAGAAGGCAAGCTGCTTGGAAGGTCTGGACATGAGGGAAAGGGCATTGAGGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR CCA 90 bp AAGCTGTGGACATCAGTGGGTGTTCAACCCCTTGTTCTGGAGTTGGGGAGATGTGAGGGATGGGGTACTTaGAGGCTCCTGCCCAGGAGC +
Preference number: 2 (lower is better)
Translates to: KLWTSVGVQPLVLELGRCEGWGT*RLLPRS
Trigger: GCTCCTGGGCAGGAGCCTCCAAGTACCCCATCCCTC...ACATCTCCCCAACTCCAGAACAAGGGGTTGAACACCCACTGATGTCCACAGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR CCA 90 bp GTCCTCAATGCCCTTTCCCTCATGTCCAGACCTTCCAAGCAGCTTGCCTTCTTTTGCTTCTGGGGCCCATaGGCACCGCCAGAGCCTTCT +
Preference number: 2 (lower is better)
Translates to: VLNALSLMSRPSKQLAFFCFWGP*APPEPS
Trigger: AGAAGGCTCTGGCGGTGCCCATGGGCCCCAGAAGCA...AAAGAAGGCAAGCTGCTTGGAAGGTCTGGACATGAGGGAAAGGGCATTGAGGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR CCA 90 bp CACACACACACACACTCCCACCCCTCCTCAGCCTGTGTTGAGATGATAGCCTTGTCCTTCCCCCAGAGGTaGCAGAAGGGCATGTGGAAC +
Preference number: 2 (lower is better)
Translates to: HTHTHSHPSSACVEMIALSFPQR*QKGMWN
Trigger: GTTCCACATGCCCTTCTGCCACCTCTGGGGGAAGGA...CAAGGCTATCATCTCAACACAGGCTGAGGAGGGGTGGGAGTGTGTGTGTGTGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR CCA 90 bp GTCCTCAATGCCCTTTCCCTCATGTCCAGACCTTCCAAGCAGCTTGCCTTCTTTGACATCCCGGGCAGGTaGAGCTCTTCCGGAGGCTCA +
Preference number: 2 (lower is better)
Translates to: VLNALSLMSRPSKQLAFFDIPGR*SSSGGS
Trigger: TGAGCCTCCGGAAGAGCTCCACCTGCCCGGGATGTC...AAAGAAGGCAAGCTGCTTGGAAGGTCTGGACATGAGGGAAAGGGCATTGAGGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR CCA 90 bp GGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGGTATACCGGAGCAGAGCTGAGTaGGCCTGGAGAGGCGACAGC +
Preference number: 2 (lower is better)
Translates to: GISSAAQAVWLLKRSQVYRSRAE*AWRGDS
Trigger: GCTGTCGCCTCTCCAGGCCCACTCAGCTCTGCTCCG...GTATACCTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR CCA 90 bp ATGATGGAAGTCATGGTGACAGGAGGGATGGGGTACTTGGAGGCTCCTGCCCAGTCTTGTTCGCTCTTCTaGGCACCCCACAGATCCTCA +
Preference number: 2 (lower is better)
Translates to: MMEVMVTGGMGYLEAPAQSCSLF*APHRSS
Trigger: TGAGGATCTGTGGGGTGCCCAGAAGAGCGAACAAGA...CTGGGCAGGAGCCTCCAAGTACCCCATCCCTCCTGTCACCATGACTTCCATCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR CCA 90 bp CCTAAGCTGTGGACATCAGTGGGTGTTCAACCCCTTGTTCTGGAGTTGGGGAGAGGTGGGCTGCATAGTTaGCTTGAGGGAAGCGGGAAG +
Preference number: 2 (lower is better)
Translates to: PKLWTSVGVQPLVLELGRGGLHS*LEGSGK
Trigger: CTTCCCGCTTCCCTCAAGCCAACTATGCAGCCCACC...TCTCCCCAACTCCAGAACAAGGGGTTGAACACCCACTGATGTCCACAGCTTAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR CCA 90 bp GGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGGTATACTGCTTCTGGGGCCCATaGGCACCGCCAGAGCCTTCT +
Preference number: 2 (lower is better)
Translates to: GISSAAQAVWLLKRSQVYCFWGP*APPEPS
Trigger: AGAAGGCTCTGGCGGTGCCCATGGGCCCCAGAAGCA...GTATACCTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR CCA 90 bp CCTAAGCTGTGGACATCAGTGGGTGTTCAACCCCTTGTTCTGGAGTTGGGGAGATCCTTCCCCCAGAGGTaGCAGAAGGGCATGTGGAAC +
Preference number: 2 (lower is better)
Translates to: PKLWTSVGVQPLVLELGRSFPQR*QKGMWN
Trigger: GTTCCACATGCCCTTCTGCCACCTCTGGGGGAAGGA...TCTCCCCAACTCCAGAACAAGGGGTTGAACACCCACTGATGTCCACAGCTTAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR CCA 90 bp GGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGGTATACGACATCCCGGGCAGGTaGAGCTCTTCCGGAGGCTCA +
Preference number: 2 (lower is better)
Translates to: GISSAAQAVWLLKRSQVYDIPGR*SSSGGS
Trigger: TGAGCCTCCGGAAGAGCTCCACCTGCCCGGGATGTC...GTATACCTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR CCA 90 bp CACACACACACACACTCCCACCCCTCCTCAGCCTGTGTTGAGATGATAGCCTTGAAGCAAACTTGGCCTTaGGGTTTCCCAGGGCTTGGC +
Preference number: 2 (lower is better)
Translates to: HTHTHSHPSSACVEMIALKQTWP*GFPGLG
Trigger: GCCAAGCCCTGGGAAACCCCAAGGCCAAGTTTGCTT...CAAGGCTATCATCTCAACACAGGCTGAGGAGGGGTGGGAGTGTGTGTGTGTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR CCA 90 bp GAGCAGGGCCAGGCAGCCTTCCCTCCGAGTAGCAAATCTGCTCTGAGGCTCACACACAGACCTAAGCTGTaGACATCAGTGGGTGTTCAA +
Preference number: 2 (lower is better)
Translates to: EQGQAAFPPSSKSALRLTHRPKL*TSVGVQ
Trigger: TTGAACACCCACTGATGTCCACAGCTTAGGTCTGTG...TGTGAGCCTCAGAGCAGATTTGCTACTCGGAGGGAAGGCTGCCTGGCCCTGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR CCA 90 bp GTCCTCAATGCCCTTTCCCTCATGTCCAGACCTTCCAAGCAGCTTGCCTTCTTTGGGCCAATGAGAGGGTaGGCAGAGATGGCTTGCAGG +
Preference number: 2 (lower is better)
Translates to: VLNALSLMSRPSKQLAFFGPMRG*AEMACR
Trigger: CCTGCAAGCCATCTCTGCCCACCCTCTCATTGGCCC...AAAGAAGGCAAGCTGCTTGGAAGGTCTGGACATGAGGGAAAGGGCATTGAGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR TCA 90 bp GGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGGTATACATGGCAAACCCCAGGTaGTCAAGGGGCTGGTGCTTC +
Preference number: 2 (lower is better)
Translates to: GISSAAQAVWLLKRSQVYMANPR*SRGWCF
Trigger: GAAGCACCAGCCCCTTGATCACCTGGGGTTTGCCAT...GTATACCTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR CCA 90 bp GTCCTCAATGCCCTTTCCCTCATGTCCAGACCTTCCAAGCAGCTTGCCTTCTTTCTCCAGCCACTCCTCTaGCATCTCAAGTGCAGCTCA +
Preference number: 2 (lower is better)
Translates to: VLNALSLMSRPSKQLAFFLQPLL*HLKCSS
Trigger: TGAGCTGCACTTGAGATGCCAGAGGAGTGGCTGGAG...AAAGAAGGCAAGCTGCTTGGAAGGTCTGGACATGAGGGAAAGGGCATTGAGGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR CCA 90 bp CACACACACACACACTCCCACCCCTCCTCAGCCTGTGTTGAGATGATAGCCTTGCCCAGTCCCAACTTTTaGGACAATAGAGGAACTGGG +
Preference number: 2 (lower is better)
Translates to: HTHTHSHPSSACVEMIALPSPNF*DNRGTG
Trigger: CCCAGTTCCTCTATTGTCCCAAAAGTTGGGACTGGG...CAAGGCTATCATCTCAACACAGGCTGAGGAGGGGTGGGAGTGTGTGTGTGTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR CCA 90 bp GTCCTCAATGCCCTTTCCCTCATGTCCAGACCTTCCAAGCAGCTTGCCTTCTTTAAGCTCTTGTCAGCCTaGGATGCTGTGTCCCAGTCC +
Preference number: 2 (lower is better)
Translates to: VLNALSLMSRPSKQLAFFKLLSA*DAVSQS
Trigger: GGACTGGGACACAGCATCCCAGGCTGACAAGAGCTT...AAAGAAGGCAAGCTGCTTGGAAGGTCTGGACATGAGGGAAAGGGCATTGAGGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR CCA 90 bp CACACACACACACACTCCCACCCCTCCTCAGCCTGTGTTGAGATGATAGCCTTGGAGGTTCTGTGGTGCTaGATATACAGTAGAGGGCTG +
Preference number: 2 (lower is better)
Translates to: HTHTHSHPSSACVEMIALEVLWC*IYSRGL
Trigger: CAGCCCTCTACTGTATATCCAGCACCACAGAACCTC...CAAGGCTATCATCTCAACACAGGCTGAGGAGGGGTGGGAGTGTGTGTGTGTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR CCA 90 bp GGCTCAAAGTTTTCTTCTGCCTCTGCCGTAACCATGGCTGGAGGAGAGGGTGGGAGCCCTGAGGTTCTGTaGTGCTGGATATACAGTAGA +
Preference number: 2 (lower is better)
Translates to: GSKFSSASAVTMAGGEGGSPEVL*CWIYSR
Trigger: TCTACTGTATATCCAGCACCACAGAACCTCAGGGCT...CCCACCCTCTCCTCCAGCCATGGTTACGGCAGAGGCAGAAGAAAACTTTGAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR GCA 90 bp GTCCTCAATGCCCTTTCCCTCATGTCCAGACCTTCCAAGCAGCTTGCCTTCTTTAGCCTTCTGGTGGGCTaGATAGTTGGCTTGAGGGAA +
Preference number: 2 (lower is better)
Translates to: VLNALSLMSRPSKQLAFFSLLVG*IVGLRE
Trigger: TTCCCTCAAGCCAACTATGCAGCCCACCAGAAGGCT...AAAGAAGGCAAGCTGCTTGGAAGGTCTGGACATGAGGGAAAGGGCATTGAGGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR GCA 90 bp TCCTCTGGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGAGCCTTCTGGTGGGCTaGATAGTTGGCTTGAGGGAA +
Preference number: 2 (lower is better)
Translates to: SSGISSAAQAVWLLKRSQSLLVG*IVGLRE
Trigger: TTCCCTCAAGCCAACTATGCAGCCCACCAGAAGGCT...CTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCCAGAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR GCA 90 bp CCTAAGCTGTGGACATCAGTGGGTGTTCAACCCCTTGTTCTGGAGTTGGGGAGAATTGGCTTCAGACAATaGAACAGCAGGGGTGTCCTG +
Preference number: 2 (lower is better)
Translates to: PKLWTSVGVQPLVLELGRIGFRQ*NSRGVL
Trigger: CAGGACACCCCTGCTGTTGCATTGTCTGAAGCCAAT...TCTCCCCAACTCCAGAACAAGGGGTTGAACACCCACTGATGTCCACAGCTTAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR CCA 90 bp GTCCTCAATGCCCTTTCCCTCATGTCCAGACCTTCCAAGCAGCTTGCCTTCTTTTCTTGTTCGCTCTTCTaGGCACCCCACAGATCCTCA +
Preference number: 2 (lower is better)
Translates to: VLNALSLMSRPSKQLAFFSCSLF*APHRSS
Trigger: TGAGGATCTGTGGGGTGCCCAGAAGAGCGAACAAGA...AAAGAAGGCAAGCTGCTTGGAAGGTCTGGACATGAGGGAAAGGGCATTGAGGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR CCA 90 bp GTGTTCAACCCCTTGTTCTGGAGTTGGGGAGATGTGCACACTGAGGACAAGTGTCCCACTGAGATCCTTTaGTTTCCTTCCCCCAGAGGT +
Preference number: 2 (lower is better)
Translates to: VFNPLFWSWGDVHTEDKCPTEIL*FPSPRG
Trigger: ACCTCTGGGGGAAGGAAACCAAAGGATCTCAGTGGG...ACACTTGTCCTCAGTGTGCACATCTCCCCAACTCCAGAACAAGGGGTTGAACAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR CCA 90 bp GTCCTCAATGCCCTTTCCCTCATGTCCAGACCTTCCAAGCAGCTTGCCTTCTTTCCCACTGAGATCCTTTaGTTTCCTTCCCCCAGAGGT +
Preference number: 2 (lower is better)
Translates to: VLNALSLMSRPSKQLAFFPTEIL*FPSPRG
Trigger: ACCTCTGGGGGAAGGAAACCAAAGGATCTCAGTGGG...AAAGAAGGCAAGCTGCTTGGAAGGTCTGGACATGAGGGAAAGGGCATTGAGGAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR CCA 90 bp GGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGGTATACAAGCAAACTTGGCCTTaGGGTTTCCCAGGGCTTGGC +
Preference number: 2 (lower is better)
Translates to: GISSAAQAVWLLKRSQVYKQTWP*GFPGLG
Trigger: GCCAAGCCCTGGGAAACCCCAAGGCCAAGTTTGCTT...GTATACCTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR TCA 90 bp CACACACACACACACTCCCACCCCTCCTCAGCCTGTGTTGAGATGATAGCCTTGATGTTTACAACAGTCTaGAGCAAACTTGGCCTTGGG +
Preference number: 2 (lower is better)
Translates to: HTHTHSHPSSACVEMIALMFTTV*SKLGLG
Trigger: CCCAAGGCCAAGTTTGCTTCAGACTGTTGTAAACAT...CAAGGCTATCATCTCAACACAGGCTGAGGAGGGGTGGGAGTGTGTGTGTGTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR GCA 90 bp GTCCTCAATGCCCTTTCCCTCATGTCCAGACCTTCCAAGCAGCTTGCCTTCTTTATTGGCTTCAGACAATaGAACAGCAGGGGTGTCCTG +
Preference number: 2 (lower is better)
Translates to: VLNALSLMSRPSKQLAFFIGFRQ*NSRGVL
Trigger: CAGGACACCCCTGCTGTTGCATTGTCTGAAGCCAAT...AAAGAAGGCAAGCTGCTTGGAAGGTCTGGACATGAGGGAAAGGGCATTGAGGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR CCA 90 bp ACCCTTAGAGAATGGTACCTTTTCTCCACCTCCTTGAGGTCAAAGGTCGTTAAGTGGCAGAAGGGCATGTaGAACAGCAGGGACACGGTG +
Preference number: 2 (lower is better)
Translates to: TLREWYLFSTSLRSKVVKWQKGM*NSRDTV
Trigger: CACCGTGTCCCTGCTGTTCCACATGCCCTTCTGCCA...CTTAACGACCTTTGACCTCAAGGAGGTGGAGAAAAGGTACCATTCTCTAAGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR CCA 90 bp AAGCTGTGGACATCAGTGGGTGTTCAACCCCTTGTTCTGGAGTTGGGGAGATGTGCACAACAAGGACAGTaGCAACAGTGTGCAGACACA +
Preference number: 2 (lower is better)
Translates to: KLWTSVGVQPLVLELGRCAQQGQ*QQCADT
Trigger: TGTGTCTGCACACTGTTGCCACTGTCCTTGTTGTGC...ACATCTCCCCAACTCCAGAACAAGGGGTTGAACACCCACTGATGTCCACAGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR CCA 90 bp AAGCTGTGGACATCAGTGGGTGTTCAACCCCTTGTTCTGGAGTTGGGGAGATGTTTCAATAGTCTCTTCTaGTGTGAGCAGCGTCTCTGG +
Preference number: 2 (lower is better)
Translates to: KLWTSVGVQPLVLELGRCFNSLF*CEQRLW
Trigger: CCAGAGACGCTGCTCACACCAGAAGAGACTATTGAA...ACATCTCCCCAACTCCAGAACAAGGGGTTGAACACCCACTGATGTCCACAGCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR CCA 90 bp GGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGGTATACTTCAATAGTCTCTTCTaGTGTGAGCAGCGTCTCTGG +
Preference number: 2 (lower is better)
Translates to: GISSAAQAVWLLKRSQVYFNSLF*CEQRLW
Trigger: CCAGAGACGCTGCTCACACCAGAAGAGACTATTGAA...GTATACCTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR CCA 90 bp ACCCTTAGAGAATGGTACCTTTTCTCCACCTCCTTGAGGTCAAAGGTCGTTAAGGCACAACAAGGACAGTaGCAACAGTGTGCAGACACA +
Preference number: 2 (lower is better)
Translates to: TLREWYLFSTSLRSKVVKAQQGQ*QQCADT
Trigger: TGTGTCTGCACACTGTTGCCACTGTCCTTGTTGTGC...CTTAACGACCTTTGACCTCAAGGAGGTGGAGAAAAGGTACCATTCTCTAAGGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR CCA 90 bp ACCCTTAGAGAATGGTACCTTTTCTCCACCTCCTTGAGGTCAAAGGTCGTTAAGCACAGACCTAAGCTGTaGACATCAGTGGGTGTTCAA +
Preference number: 2 (lower is better)
Translates to: TLREWYLFSTSLRSKVVKHRPKL*TSVGVQ
Trigger: TTGAACACCCACTGATGTCCACAGCTTAGGTCTGTG...CTTAACGACCTTTGACCTCAAGGAGGTGGAGAAAAGGTACCATTCTCTAAGGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR CCA 72 bp CTGGGCGGGGCGGGGCGGAGCAGAGCTGAGTGGGCCTaGAGAGGCGACAGCAAGCACAACAAGGACAGTGGC +
Preference number: 3 (lower is better)
Translates to: LGGAGRSRAEWA*RGDSKHNKDSG
Trigger: GCCACTGTCCTTGTTGTGCTTGCTGTCGCCTCTCCAGGCCCACTCAGCTCTGCTCCGCCCCGCCCCGCCCAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR CAA 90 bp GAGCAGGGCCAGGCAGCCTTCCCTCCGAGTAGCAAATCTGCTCTGAGGCTCACAACCACCATCTGCCCCTaGCTGGGGCCAGGTGGATGT +
Preference number: 3 (lower is better)
Translates to: EQGQAAFPPSSKSALRLTTTICP*LGPGGC
Trigger: ACATCCACCTGGCCCCAGCAAGGGGCAGATGGTGGT...TGTGAGCCTCAGAGCAGATTTGCTACTCGGAGGGAAGGCTGCCTGGCCCTGCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR TCA 72 bp ACATTGAACAACTTGACCCGGGGCTCAGCACCTGTCTaGACCTGCGGTCCAGGCTGGAGCAGGGCCAGGCAG +
Preference number: 3 (lower is better)
Translates to: TLNNLTRGSAPV*TCGPGWSRARQ
Trigger: CTGCCTGGCCCTGCTCCAGCCTGGACCGCAGGTTCAGACAGGTGCTGAGCCCCGGGTCAAGTTGTTCAATGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR CAA 90 bp GAGCAGGGCCAGGCAGCCTTCCCTCCGAGTAGCAAATCTGCTCTGAGGCTCACACAGTCTGAAGCAAACTaGGCCTTGGGGTTTCCCAGG +
Preference number: 3 (lower is better)
Translates to: EQGQAAFPPSSKSALRLTQSEAN*ALGFPR
Trigger: CCTGGGAAACCCCAAGGCCAAGTTTGCTTCAGACTG...TGTGAGCCTCAGAGCAGATTTGCTACTCGGAGGGAAGGCTGCCTGGCCCTGCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR CAA 90 bp GGCTCAAAGTTTTCTTCTGCCTCTGCCGTAACCATGGCTGGAGGAGAGGGTGGGGGTCTGTCCCTTCTCTaGTTCGCTCTTCTGGGCACC +
Preference number: 3 (lower is better)
Translates to: GSKFSSASAVTMAGGEGGGLSLL*FALLGT
Trigger: GGTGCCCAGAAGAGCGAACAAGAGAAGGGACAGACC...CCCACCCTCTCCTCCAGCCATGGTTACGGCAGAGGCAGAAGAAAACTTTGAGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR CAA 90 bp GTGTTCAACCCCTTGTTCTGGAGTTGGGGAGATGTGCACACTGAGGACAAGTGTGGAGGGATGGGGTACTaGGAGGCTCCTGCCCAGGAG +
Preference number: 3 (lower is better)
Translates to: VFNPLFWSWGDVHTEDKCGGMGY*EAPAQE
Trigger: CTCCTGGGCAGGAGCCTCCAAGTACCCCATCCCTCC...ACACTTGTCCTCAGTGTGCACATCTCCCCAACTCCAGAACAAGGGGTTGAACAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR CAA 90 bp GGCTCAAAGTTTTCTTCTGCCTCTGCCGTAACCATGGCTGGAGGAGAGGGTGGGCAGGGAGCCCACTGTTaGGTGAAGGTGCACCATAGG +
Preference number: 3 (lower is better)
Translates to: GSKFSSASAVTMAGGEGGQGAHC*VKVHHR
Trigger: CCTATGGTGCACCTTCACCAAACAGTGGGCTCCCTG...CCCACCCTCTCCTCCAGCCATGGTTACGGCAGAGGCAGAAGAAAACTTTGAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR TCA 72 bp GCCAGGCAGCCTTCCCTCCGAGTAGCAAATCTGCTCTaGGGCTCACAGGTTTGCAAACCACCATCTGCCCCT +
Preference number: 3 (lower is better)
Translates to: ARQPSLRVANLL*GSQVCKPPSAP
Trigger: AGGGGCAGATGGTGGTTTGCAAACCTGTGAGCCTCAGAGCAGATTTGCTACTCGGAGGGAAGGCTGCCTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR CAA 90 bp GGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGGTATACGGAGGGATGGGGTACTaGGAGGCTCCTGCCCAGGAG +
Preference number: 3 (lower is better)
Translates to: GISSAAQAVWLLKRSQVYGGMGY*EAPAQE
Trigger: CTCCTGGGCAGGAGCCTCCAAGTACCCCATCCCTCC...GTATACCTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR CAA 90 bp GGCTCAAAGTTTTCTTCTGCCTCTGCCGTAACCATGGCTGGAGGAGAGGGTGGGACAGAAGGCAAGCTCTaGTCAGCCTGGGATGCTGTG +
Preference number: 3 (lower is better)
Translates to: GSKFSSASAVTMAGGEGGTEGKL*SAWDAV
Trigger: CACAGCATCCCAGGCTGACAAGAGCTTGCCTTCTGT...CCCACCCTCTCCTCCAGCCATGGTTACGGCAGAGGCAGAAGAAAACTTTGAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR TCA 72 bp CCTAGTCTGGATAGCCTAGATGGAAACCACCTTCCCTaGTGCTGGGCCTCAAGCCCTGAGGTTCTGTGGTGC +
Preference number: 3 (lower is better)
Translates to: PSLDSLDGNHLP*CWASSPEVLWC
Trigger: GCACCACAGAACCTCAGGGCTTGAGGCCCAGCATCAGGGAAGGTGGTTTCCATCTAGGCTATCCAGACTAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR GCA 72 bp CCTGTGAGAACTGGGCTCAAAGTTTTCTTCTGCCTCTaGCGTAACCATGGCTGGAGGAGAGGGTGGGAGCTG +
Preference number: 3 (lower is better)
Translates to: PVRTGLKVFFCL*RNHGWRRGWEL
Trigger: CAGCTCCCACCCTCTCCTCCAGCCATGGTTACGGCAGAGGCAGAAGAAAACTTTGAGCCCAGTTCTCACAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR CAA 90 bp TCCTCTGGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGGGCTGCATAGTTGGCTaGAGGGAAGCGGGAAGAGGC +
Preference number: 3 (lower is better)
Translates to: SSGISSAAQAVWLLKRSQGCIVG*REAGRG
Trigger: GCCTCTTCCCGCTTCCCTCAAGCCAACTATGCAGCC...CTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCCAGAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR CAA 90 bp GGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGGTATACGAACTGCCCCAACTCTaGCCTCCAGGTAGGAGGCCC +
Preference number: 3 (lower is better)
Translates to: GISSAAQAVWLLKRSQVYELPQL*PPGRRP
Trigger: GGGCCTCCTACCTGGAGGCAAGAGTTGGGGCAGTTC...GTATACCTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR CAA 90 bp CCTAAGCTGTGGACATCAGTGGGTGTTCAACCCCTTGTTCTGGAGTTGGGGAGAGAAGCAAACTTGGCCTaGGGGTTTCCCAGGGCTTGG +
Preference number: 3 (lower is better)
Translates to: PKLWTSVGVQPLVLELGREANLA*GFPRAW
Trigger: CCAAGCCCTGGGAAACCCCAAGGCCAAGTTTGCTTC...TCTCCCCAACTCCAGAACAAGGGGTTGAACACCCACTGATGTCCACAGCTTAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR CAA 90 bp GTCCTCAATGCCCTTTCCCTCATGTCCAGACCTTCCAAGCAGCTTGCCTTCTTTGTTCCTCTCACCCCCTaGATCCCAGGCAGGGCCAAT +
Preference number: 3 (lower is better)
Translates to: VLNALSLMSRPSKQLAFFVPLTP*IPGRAN
Trigger: ATTGGCCCTGCCTGGGATCAAGGGGGTGAGAGGAAC...AAAGAAGGCAAGCTGCTTGGAAGGTCTGGACATGAGGGAAAGGGCATTGAGGAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR CAA 90 bp TCCTCTGGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGAGGATTCCCCAGCCCTaGGTTCCTCTCACCCCCTTG +
Preference number: 3 (lower is better)
Translates to: SSGISSAAQAVWLLKRSQRIPQP*VPLTPL
Trigger: CAAGGGGGTGAGAGGAACCAAGGGCTGGGGAATCCT...CTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCCAGAGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR TCA 72 bp GAGAGGAGAAAGGGAAGCAGGGAGCCCACTGTTTGGTaGAGGTGCACCATAGGGCAGGTACCAGACTTAGGA +
Preference number: 3 (lower is better)
Translates to: ERRKGSREPTVW*RCTIGQVPDLG
Trigger: TCCTAAGTCTGGTACCTGCCCTATGGTGCACCTTCACCAAACAGTGGGCTCCCTGCTTCCCTTTCTCCTCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR GCA 72 bp CCCCAACTCTTGCCTCCAGGTAGGAGGCCCCGTACATaGAACTCAGTCTCGAGGAAAGTTCTAGTCAGTCCA +
Preference number: 3 (lower is better)
Translates to: PQLLPPGRRPRT*NSVSRKVLVSP
Trigger: TGGACTGACTAGAACTTTCCTCGAGACTGAGTTGCATGTACGGGGCCTCCTACCTGGAGGCAAGAGTTGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR GCA 72 bp GACAGCAGCCTCCAGCCACTCCTCTGGCATCTCAAGTaGAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCA +
Preference number: 3 (lower is better)
Translates to: DSSLQPLLWHLK*SSGSLAFEEKS
Trigger: TGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCCAGAGGAGTGGCTGGAGGCTGCTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR CAA 90 bp GTCCTCAATGCCCTTTCCCTCATGTCCAGACCTTCCAAGCAGCTTGCCTTCTTTGGTCTGTCCCTTCTCTaGTTCGCTCTTCTGGGCACC +
Preference number: 3 (lower is better)
Translates to: VLNALSLMSRPSKQLAFFGLSLL*FALLGT
Trigger: GGTGCCCAGAAGAGCGAACAAGAGAAGGGACAGACC...AAAGAAGGCAAGCTGCTTGGAAGGTCTGGACATGAGGGAAAGGGCATTGAGGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR CAA 90 bp GGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGGTATACGTTCCTCTCACCCCCTaGATCCCAGGCAGGGCCAAT +
Preference number: 3 (lower is better)
Translates to: GISSAAQAVWLLKRSQVYVPLTP*IPGRAN
Trigger: ATTGGCCCTGCCTGGGATCAAGGGGGTGAGAGGAAC...GTATACCTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR GCA 72 bp GGGTGTTCAACCCCTTGTTCTGGAGTTGGGGAGATGTaGACACTGAGGACAAGTGTGTACCAGGCAAGACCA +
Preference number: 3 (lower is better)
Translates to: GCSTPCSGVGEM*TLRTSVYQARP
Trigger: TGGTCTTGCCTGGTACACACTTGTCCTCAGTGTGCACATCTCCCCAACTCCAGAACAAGGGGTTGAACACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR GCA 72 bp CAGAGTGGGGCAAGGCATGAGCTCAAAGTAACAAGGTaGCCAAAGACAGAAGGCAAGCTCTTGTCAGCCTGG +
Preference number: 3 (lower is better)
Translates to: QSGARHELKVTR*PKTEGKLLSAW
Trigger: CCAGGCTGACAAGAGCTTGCCTTCTGTCTTTGGGCACCTTGTTACTTTGAGCTCATGCCTTGCCCCACTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR GCA 72 bp TCCTTTCCTGTGAGAACTGGGCTCAAAGTTTTCTTCTaGCTCTGCCGTAACCATGGCTGGAGGAGAGGGTGG +
Preference number: 3 (lower is better)
Translates to: SFPVRTGLKVFF*LCRNHGWRRGW
Trigger: CCACCCTCTCCTCCAGCCATGGTTACGGCAGAGGCAGAAGAAAACTTTGAGCCCAGTTCTCACAGGAAAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR CCA 72 bp GGCGGTTCCATTTGGCAGGCTGTCTGTCTTAGGTCTTaGATTCCATGGGAAGATGGTGATGGGGAAGTGGCT +
Preference number: 3 (lower is better)
Translates to: GGSIWQAVCLRS*IPWEDGDGEVA
Trigger: AGCCACTTCCCCATCACCATCTTCCCATGGAATCCAAGACCTAAGACAGACAGCCTGCCAAATGGAACCGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR CAA 90 bp ACCCTTAGAGAATGGTACCTTTTCTCCACCTCCTTGAGGTCAAAGGTCGTTAAGGAACTGCCCCAACTCTaGCCTCCAGGTAGGAGGCCC +
Preference number: 3 (lower is better)
Translates to: TLREWYLFSTSLRSKVVKELPQL*PPGRRP
Trigger: GGGCCTCCTACCTGGAGGCAAGAGTTGGGGCAGTTC...CTTAACGACCTTTGACCTCAAGGAGGTGGAGAAAAGGTACCATTCTCTAAGGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR CAA 90 bp GTCCTCAATGCCCTTTCCCTCATGTCCAGACCTTCCAAGCAGCTTGCCTTCTTTAAAGACCACACCCCCTaGTGCCACCTAGGTCCAAGT +
Preference number: 3 (lower is better)
Translates to: VLNALSLMSRPSKQLAFFKDHTP*CHLGPS
Trigger: ACTTGGACCTAGGTGGCACAAGGGGGTGTGGTCTTT...AAAGAAGGCAAGCTGCTTGGAAGGTCTGGACATGAGGGAAAGGGCATTGAGGAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR TCA 72 bp CCCTTGTGCCACCTAGGTCCAAGTGTAGGGTTAGCATaGAGTCTCCCAGCCTGTGTGCTCAGTCCTTCATTA +
Preference number: 3 (lower is better)
Translates to: PLCHLGPSVGLA*SLPACVLSPSL
Trigger: TAATGAAGGACTGAGCACACAGGCTGGGAGACTTCATGCTAACCCTACACTTGGACCTAGGTGGCACAAGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR CCA 72 bp GGACATCAGTGGGTGTTCAACCCCTTGTTCTGGAGTTaGGGAGATGTGCACACTGAGGACAAGTGTGTACCA +
Preference number: 3 (lower is better)
Translates to: GHQWVFNPLFWS*GDVHTEDKCVP
Trigger: TGGTACACACTTGTCCTCAGTGTGCACATCTCCCCAACTCCAGAACAAGGGGTTGAACACCCACTGATGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR CAA 90 bp GGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGGTATACCAGTCTGAAGCAAACTaGGCCTTGGGGTTTCCCAGG +
Preference number: 3 (lower is better)
Translates to: GISSAAQAVWLLKRSQVYQSEAN*ALGFPR
Trigger: CCTGGGAAACCCCAAGGCCAAGTTTGCTTCAGACTG...GTATACCTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR CAA 90 bp TCCTCTGGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGTGGGTGTTCAACCCCTaGTTCTGGAGTTGGGGAGAT +
Preference number: 3 (lower is better)
Translates to: SSGISSAAQAVWLLKRSQWVFNP*FWSWGD
Trigger: ATCTCCCCAACTCCAGAACAAGGGGTTGAACACCCA...CTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCCAGAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR CAA 90 bp ACCCTTAGAGAATGGTACCTTTTCTCCACCTCCTTGAGGTCAAAGGTCGTTAAGGAAGCAAACTTGGCCTaGGGGTTTCCCAGGGCTTGG +
Preference number: 3 (lower is better)
Translates to: TLREWYLFSTSLRSKVVKEANLA*GFPRAW
Trigger: CCAAGCCCTGGGAAACCCCAAGGCCAAGTTTGCTTC...CTTAACGACCTTTGACCTCAAGGAGGTGGAGAAAAGGTACCATTCTCTAAGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR CCA 72 bp GGCAGAGATGGCTTGCAGGGGGTGGTGGTAATAAGATaGAAAGACAACACCAGACCCTTAGAGAATGGTACC +
Preference number: 3 (lower is better)
Translates to: GRDGLQGVVVIR*KDNTRPLENGT
Trigger: GGTACCATTCTCTAAGGGTCTGGTGTTGTCTTTCCATCTTATTACCACCACCCCCTGCAAGCCATCTCTGCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR CCA 72 bp ATTTGGCAGGCTGTCTGTCTTAGGTCTTGGATTCCATaGGAAGATGGTGATGGGGAAGTGGCTTGCTCTGGT +
Preference number: 3 (lower is better)
Translates to: IWQAVCLRSWIP*EDGDGEVACSG
Trigger: ACCAGAGCAAGCCACTTCCCCATCACCATCTTCCCATGGAATCCAAGACCTAAGACAGACAGCCTGCCAAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR TCA 72 bp CAACCCCTTGTTCTGGAGTTGGGGAGATGTGCACACTaGGGACAAGTGTGTACCAGGCAAGACCAATTATGT +
Preference number: 3 (lower is better)
Translates to: QPLVLELGRCAH*GQVCTRQDQLC
Trigger: ACATAATTGGTCTTGCCTGGTACACACTTGTCCTCAGTGTGCACATCTCCCCAACTCCAGAACAAGGGGTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR-3UTR CAA 90 bp GTCCTCAATGCCCTTTCCCTCATGTCCAGACCTTCCAAGCAGCTTGCCTTCTTTTACAGAACAAAAACATaGAACAACTTGACCCGGGGC +
Preference number: 3 (lower is better)
Translates to: VLNALSLMSRPSKQLAFFYRTKT*NNLTRG
Trigger: GCCCCGGGTCAAGTTGTTCAATGTTTTTGTTCTGTA...AAAGAAGGCAAGCTGCTTGGAAGGTCTGGACATGAGGGAAAGGGCATTGAGGAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR TCA 72 bp AGACCCTTAGAGAATGGTACCTTTTCTCCACCTCCTTaGGGTCAAAGGTCGTTAAGGTTAGACACAGACCTA +
Preference number: 3 (lower is better)
Translates to: RPLENGTFSPPP*GQRSLRLDTDL
Trigger: TAGGTCTGTGTCTAACCTTAACGACCTTTGACCTCAAGGAGGTGGAGAAAAGGTACCATTCTCTAAGGGTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR CCA 72 bp AATAAGATGGAAAGACAACACCAGACCCTTAGAGAATaGTACCTTTTCTCCACCTCCTTGAGGTCAAAGGTC +
Preference number: 3 (lower is better)
Translates to: NKMERQHQTLRE*YLFSTSLRSKV
Trigger: GACCTTTGACCTCAAGGAGGTGGAGAAAAGGTACCATTCTCTAAGGGTCTGGTGTTGTCTTTCCATCTTATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR GCA 90 bp GGCTCAAAGTTTTCTTCTGCCTCTGCCGTAACCATGGCTGGAGGAGAGGGTGGGGCCGGCGGCGGCGCGTaGTTCGTCCACGGGTTCACC +
Preference number: 4 (lower is better)
Translates to: GSKFSSASAVTMAGGEGGAGGGA*FVHGFT
Trigger: GGTGAACCCGTGGACGAAGCACGCGCCGCCGCCGGC...CCCACCCTCTCCTCCAGCCATGGTTACGGCAGAGGCAGAAGAAAACTTTGAGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp GAGCAGGGCCAGGCAGCCTTCCCTCCGAGTAGCAAATCTGCTCTGAGGCTCACATCCACGGGTTCACCTTaGGCGGCGGTGCCTCCACGA +
Preference number: 4 (lower is better)
Translates to: EQGQAAFPPSSKSALRLTSTGSP*AAVPPR
Trigger: TCGTGGAGGCACCGCCGCCCAAGGTGAACCCGTGGA...TGTGAGCCTCAGAGCAGATTTGCTACTCGGAGGGAAGGCTGCCTGGCCCTGCTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR TCA 90 bp GAGCAGGGCCAGGCAGCCTTCCCTCCGAGTAGCAAATCTGCTCTGAGGCTCACATTGTTGGCACTGGGGTaGCTGCACGGGGAGAGCCAG +
Preference number: 4 (lower is better)
Translates to: EQGQAAFPPSSKSALRLTLLALG*LHGESQ
Trigger: CTGGCTCTCCCCGTGCAGTCACCCCAGTGCCAACAA...TGTGAGCCTCAGAGCAGATTTGCTACTCGGAGGGAAGGCTGCCTGGCCCTGCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR GCA 90 bp GTCCTCAATGCCCTTTCCCTCATGTCCAGACCTTCCAAGCAGCTTGCCTTCTTTGCCGGCGGCGGCGCGTaGTTCGTCCACGGGTTCACC +
Preference number: 4 (lower is better)
Translates to: VLNALSLMSRPSKQLAFFAGGGA*FVHGFT
Trigger: GGTGAACCCGTGGACGAAGCACGCGCCGCCGCCGGC...AAAGAAGGCAAGCTGCTTGGAAGGTCTGGACATGAGGGAAAGGGCATTGAGGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR GCA 90 bp GAGCAGGGCCAGGCAGCCTTCCCTCCGAGTAGCAAATCTGCTCTGAGGCTCACACGGTTTAGGAGCAGCTaGCCTCACCACCTTGGCTGG +
Preference number: 4 (lower is better)
Translates to: EQGQAAFPPSSKSALRLTRFRSS*PHHLGW
Trigger: CCAGCCAAGGTGGTGAGGGCAGCTGCTCCTAAACCG...TGTGAGCCTCAGAGCAGATTTGCTACTCGGAGGGAAGGCTGCCTGGCCCTGCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR GCA 90 bp GAGCAGGGCCAGGCAGCCTTCCCTCCGAGTAGCAAATCTGCTCTGAGGCTCACAACGGGGAGAGCCAGGTaGCGACTCTGTCTCTTTCTG +
Preference number: 4 (lower is better)
Translates to: EQGQAAFPPSSKSALRLTTGRAR*RLCLFL
Trigger: CAGAAAGAGACAGAGTCGGCACCTGGCTCTCCCCGT...TGTGAGCCTCAGAGCAGATTTGCTACTCGGAGGGAAGGCTGCCTGGCCCTGCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR GCA 90 bp GGCTCAAAGTTTTCTTCTGCCTCTGCCGTAACCATGGCTGGAGGAGAGGGTGGGGGTGTCGCTTGTGGTTaGCTTCCTCGCCCATGGGGG +
Preference number: 4 (lower is better)
Translates to: GSKFSSASAVTMAGGEGGGVACG*LPRPWG
Trigger: CCCCCATGGGCGAGGAAGGCAACCACAAGCGACACC...CCCACCCTCTCCTCCAGCCATGGTTACGGCAGAGGCAGAAGAAAACTTTGAGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp GGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGGTATACTTCCGCAGCTGCGGGTaGCCGCGGGCTCTCGCGCTC +
Preference number: 4 (lower is better)
Translates to: GISSAAQAVWLLKRSQVYFRSCG*PRALAL
Trigger: GAGCGCGAGAGCCCGCGGCCACCCGCAGCTGCGGAA...GTATACCTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp GGCTCAAAGTTTTCTTCTGCCTCTGCCGTAACCATGGCTGGAGGAGAGGGTGGGGAACCTGGGCTCCTCTaGCTTCTTGGGGCGTGCTGG +
Preference number: 4 (lower is better)
Translates to: GSKFSSASAVTMAGGEGGEPGLL*LLGACW
Trigger: CCAGCACGCCCCAAGAAGCCAGAGGAGCCCAGGTTC...CCCACCCTCTCCTCCAGCCATGGTTACGGCAGAGGCAGAAGAAAACTTTGAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp GAGCAGGGCCAGGCAGCCTTCCCTCCGAGTAGCAAATCTGCTCTGAGGCTCACATTGGGTGGGAGAACCTaGGCTCCTCTGGCTTCTTGG +
Preference number: 4 (lower is better)
Translates to: EQGQAAFPPSSKSALRLTLGGRT*APLASW
Trigger: CCAAGAAGCCAGAGGAGCCCAGGTTCTCCCACCCAA...TGTGAGCCTCAGAGCAGATTTGCTACTCGGAGGGAAGGCTGCCTGGCCCTGCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR GCA 90 bp GTCCTCAATGCCCTTTCCCTCATGTCCAGACCTTCCAAGCAGCTTGCCTTCTTTTTCCTCGCCAGGCCGTaGTCCTCGGCCTGCAGCAGC +
Preference number: 4 (lower is better)
Translates to: VLNALSLMSRPSKQLAFFFLARP*SSACSS
Trigger: GCTGCTGCAGGCCGAGGAGCACGGCCTGGCGAGGAA...AAAGAAGGCAAGCTGCTTGGAAGGTCTGGACATGAGGGAAAGGGCATTGAGGAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR GCA 90 bp ATGATGGAAGTCATGGTGACAGGAGGGATGGGGTACTTGGAGGCTCCTGCCCAGGCAGTCCTGGGCCTGTaGTCCCGAGAATCCATCACC +
Preference number: 4 (lower is better)
Translates to: MMEVMVTGGMGYLEAPAQAVLGL*SRESIT
Trigger: GGTGATGGATTCTCGGGAGCACAGGCCCAGGACTGC...CTGGGCAGGAGCCTCCAAGTACCCCATCCCTCCTGTCACCATGACTTCCATCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp GGCTCAAAGTTTTCTTCTGCCTCTGCCGTAACCATGGCTGGAGGAGAGGGTGGGTTCTGCCCGCCTCGCTaGCAGTCCTCATCCCCATTC +
Preference number: 4 (lower is better)
Translates to: GSKFSSASAVTMAGGEGGFCPPR*QSSSPF
Trigger: GAATGGGGATGAGGACTGCCAGCGAGGCGGGCAGAA...CCCACCCTCTCCTCCAGCCATGGTTACGGCAGAGGCAGAAGAAAACTTTGAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp CACACACACACACACTCCCACCCCTCCTCAGCCTGTGTTGAGATGATAGCCTTGGCTCCTCTGGCTTCTTaGGGCGTGCTGGTGAGGGTC +
Preference number: 4 (lower is better)
Translates to: HTHTHSHPSSACVEMIALAPLAS*GVLVRV
Trigger: GACCCTCACCAGCACGCCCCAAGAAGCCAGAGGAGC...CAAGGCTATCATCTCAACACAGGCTGAGGAGGGGTGGGAGTGTGTGTGTGTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp CACACACACACACACTCCCACCCCTCCTCAGCCTGTGTTGAGATGATAGCCTTGGGCCTGCTGGAAGACTaGGAAGGGCACCGCTTCCTG +
Preference number: 4 (lower is better)
Translates to: HTHTHSHPSSACVEMIALGLLED*EGHRFL
Trigger: CAGGAAGCGGTGCCCTTCCCAGTCTTCCAGCAGGCC...CAAGGCTATCATCTCAACACAGGCTGAGGAGGGGTGGGAGTGTGTGTGTGTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR GCA 90 bp GGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGGTATACTTCCTCGCCAGGCCGTaGTCCTCGGCCTGCAGCAGC +
Preference number: 4 (lower is better)
Translates to: GISSAAQAVWLLKRSQVYFLARP*SSACSS
Trigger: GCTGCTGCAGGCCGAGGAGCACGGCCTGGCGAGGAA...GTATACCTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR GCA 90 bp GTGTTCAACCCCTTGTTCTGGAGTTGGGGAGATGTGCACACTGAGGACAAGTGTTGGCACTGGGGTGACTaGACGGGGAGAGCCAGGTGC +
Preference number: 4 (lower is better)
Translates to: VFNPLFWSWGDVHTEDKCWHWGD*TGRARC
Trigger: GCACCTGGCTCTCCCCGTGCAGTCACCCCAGTGCCA...ACACTTGTCCTCAGTGTGCACATCTCCCCAACTCCAGAACAAGGGGTTGAACAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR GCA 90 bp CACACACACACACACTCCCACCCCTCCTCAGCCTGTGTTGAGATGATAGCCTTGGCAGTCCTGGGCCTGTaGTCCCGAGAATCCATCACC +
Preference number: 4 (lower is better)
Translates to: HTHTHSHPSSACVEMIALAVLGL*SRESIT
Trigger: GGTGATGGATTCTCGGGAGCACAGGCCCAGGACTGC...CAAGGCTATCATCTCAACACAGGCTGAGGAGGGGTGGGAGTGTGTGTGTGTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR GCA 90 bp GGCTCAAAGTTTTCTTCTGCCTCTGCCGTAACCATGGCTGGAGGAGAGGGTGGGGGGTACAGCCATAGCTaGCGACTGCAGGTGTTCCCT +
Preference number: 4 (lower is better)
Translates to: GSKFSSASAVTMAGGEGGGYSHS*RLQVFP
Trigger: AGGGAACACCTGCAGTCGGCAGCTATGGCTGTACCC...CCCACCCTCTCCTCCAGCCATGGTTACGGCAGAGGCAGAAGAAAACTTTGAGCC
58% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp ACCCTTAGAGAATGGTACCTTTTCTCCACCTCCTTGAGGTCAAAGGTCGTTAAGTTCCGCAGCTGCGGGTaGCCGCGGGCTCTCGCGCTC +
Preference number: 4 (lower is better)
Translates to: TLREWYLFSTSLRSKVVKFRSCG*PRALAL
Trigger: GAGCGCGAGAGCCCGCGGCCACCCGCAGCTGCGGAA...CTTAACGACCTTTGACCTCAAGGAGGTGGAGAAAAGGTACCATTCTCTAAGGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp GTCCTCAATGCCCTTTCCCTCATGTCCAGACCTTCCAAGCAGCTTGCCTTCTTTTCCACGGGTTCACCTTaGGCGGCGGTGCCTCCACGA +
Preference number: 4 (lower is better)
Translates to: VLNALSLMSRPSKQLAFFSTGSP*AAVPPR
Trigger: TCGTGGAGGCACCGCCGCCCAAGGTGAACCCGTGGA...AAAGAAGGCAAGCTGCTTGGAAGGTCTGGACATGAGGGAAAGGGCATTGAGGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp GGCTCAAAGTTTTCTTCTGCCTCTGCCGTAACCATGGCTGGAGGAGAGGGTGGGTTGGGTGGGAGAACCTaGGCTCCTCTGGCTTCTTGG +
Preference number: 4 (lower is better)
Translates to: GSKFSSASAVTMAGGEGGLGGRT*APLASW
Trigger: CCAAGAAGCCAGAGGAGCCCAGGTTCTCCCACCCAA...CCCACCCTCTCCTCCAGCCATGGTTACGGCAGAGGCAGAAGAAAACTTTGAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp GAGCAGGGCCAGGCAGCCTTCCCTCCGAGTAGCAAATCTGCTCTGAGGCTCACAGAGACTCTGGGACAGTaGTTGGTAGAGAACGGGCAA +
Preference number: 4 (lower is better)
Translates to: EQGQAAFPPSSKSALRLTETLGQ*LVENGQ
Trigger: TTGCCCGTTCTCTACCAACCACTGTCCCAGAGTCTC...TGTGAGCCTCAGAGCAGATTTGCTACTCGGAGGGAAGGCTGCCTGGCCCTGCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp GGCTCAAAGTTTTCTTCTGCCTCTGCCGTAACCATGGCTGGAGGAGAGGGTGGGACTGGGTGTCGCTTGTaGTTGCCTTCCTCGCCCATG +
Preference number: 4 (lower is better)
Translates to: GSKFSSASAVTMAGGEGGTGCRL*LPSSPM
Trigger: CATGGGCGAGGAAGGCAACCACAAGCGACACCCAGT...CCCACCCTCTCCTCCAGCCATGGTTACGGCAGAGGCAGAAGAAAACTTTGAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR CAA 72 bp CCTCCGAGTAGCAAATCTGCTCTGAGGCTCACAGGTTaGCAAACCACCATCTGCCCCTTGCTGGGGCCAGGT +
Preference number: 4 (lower is better)
Translates to: PPSSKSALRLTG*QTTICPLLGPG
Trigger: ACCTGGCCCCAGCAAGGGGCAGATGGTGGTTTGCAAACCTGTGAGCCTCAGAGCAGATTTGCTACTCGGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR TCA 90 bp GTCCTCAATGCCCTTTCCCTCATGTCCAGACCTTCCAAGCAGCTTGCCTTCTTTTTGTTGGCACTGGGGTaGCTGCACGGGGAGAGCCAG +
Preference number: 4 (lower is better)
Translates to: VLNALSLMSRPSKQLAFFLLALG*LHGESQ
Trigger: CTGGCTCTCCCCGTGCAGTCACCCCAGTGCCAACAA...AAAGAAGGCAAGCTGCTTGGAAGGTCTGGACATGAGGGAAAGGGCATTGAGGAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR TCA 90 bp GAGCAGGGCCAGGCAGCCTTCCCTCCGAGTAGCAAATCTGCTCTGAGGCTCACAGGGTCTTCAGGTTGCTaGCCTCCTCTGTTTTTGTTG +
Preference number: 4 (lower is better)
Translates to: EQGQAAFPPSSKSALRLTGSSGC*PPLFLL
Trigger: CAACAAAAACAGAGGAGGTCAGCAACCTGAAGACCC...TGTGAGCCTCAGAGCAGATTTGCTACTCGGAGGGAAGGCTGCCTGGCCCTGCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR TCA 90 bp ATGATGGAAGTCATGGTGACAGGAGGGATGGGGTACTTGGAGGCTCCTGCCCAGCTGGAACTTGGGCAGTaGCTGAGGGGTACAGCCATA +
Preference number: 4 (lower is better)
Translates to: MMEVMVTGGMGYLEAPAQLELGQ*LRGTAI
Trigger: TATGGCTGTACCCCTCAGTCACTGCCCAAGTTCCAG...CTGGGCAGGAGCCTCCAAGTACCCCATCCCTCCTGTCACCATGACTTCCATCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR TCA 90 bp GGCTCAAAGTTTTCTTCTGCCTCTGCCGTAACCATGGCTGGAGGAGAGGGTGGGAGGGTGTTCATCTCCTaGGACTGGCCAATGCCCAAG +
Preference number: 4 (lower is better)
Translates to: GSKFSSASAVTMAGGEGGRVFIS*DWPMPK
Trigger: CTTGGGCATTGGCCAGTCTCAGGAGATGAACACCCT...CCCACCCTCTCCTCCAGCCATGGTTACGGCAGAGGCAGAAGAAAACTTTGAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR TCA 90 bp GAGCAGGGCCAGGCAGCCTTCCCTCCGAGTAGCAAATCTGCTCTGAGGCTCACACCTCCTGGAAATCCTTaGATATGTCCAGCCGGAACT +
Preference number: 4 (lower is better)
Translates to: EQGQAAFPPSSKSALRLTPPGNP*ICPAGT
Trigger: AGTTCCGGCTGGACATATTCAAGGATTTCCAGGAGG...TGTGAGCCTCAGAGCAGATTTGCTACTCGGAGGGAAGGCTGCCTGGCCCTGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR GCA 90 bp GGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGGTATACTGGCACTGGGGTGACTaGACGGGGAGAGCCAGGTGC +
Preference number: 4 (lower is better)
Translates to: GISSAAQAVWLLKRSQVYWHWGD*TGRARC
Trigger: GCACCTGGCTCTCCCCGTGCAGTCACCCCAGTGCCA...GTATACCTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR GCA 90 bp AAGCTGTGGACATCAGTGGGTGTTCAACCCCTTGTTCTGGAGTTGGGGAGATGTGGTGTCGCTTGTGGTTaGCTTCCTCGCCCATGGGGG +
Preference number: 4 (lower is better)
Translates to: KLWTSVGVQPLVLELGRCGVACG*LPRPWG
Trigger: CCCCCATGGGCGAGGAAGGCAACCACAAGCGACACC...ACATCTCCCCAACTCCAGAACAAGGGGTTGAACACCCACTGATGTCCACAGCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR GCA 90 bp CCTAAGCTGTGGACATCAGTGGGTGTTCAACCCCTTGTTCTGGAGTTGGGGAGACTCTCCGCTGCCTCCTaGTACCACTGGGTGTCGCTT +
Preference number: 4 (lower is better)
Translates to: PKLWTSVGVQPLVLELGRLSAAS*YHWVSL
Trigger: AAGCGACACCCAGTGGTAGCAGGAGGCAGCGGAGAG...TCTCCCCAACTCCAGAACAAGGGGTTGAACACCCACTGATGTCCACAGCTTAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR GCA 90 bp GGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGGTATACAAGGGCACCGCTTCCTaGCCTCTCCGCTGCCTCCTG +
Preference number: 4 (lower is better)
Translates to: GISSAAQAVWLLKRSQVYKGTAS*PLRCLL
Trigger: CAGGAGGCAGCGGAGAGGGCAGGAAGCGGTGCCCTT...GTATACCTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp ATGATGGAAGTCATGGTGACAGGAGGGATGGGGTACTTGGAGGCTCCTGCCCAGTGGGGGTCCAGGCAGTaGCCACTTTTCAGGTTCTTC +
Preference number: 4 (lower is better)
Translates to: MMEVMVTGGMGYLEAPAQWGSRQ*PLFRFF
Trigger: GAAGAACCTGAAAAGTGGCCACTGCCTGGACCCCCA...CTGGGCAGGAGCCTCCAAGTACCCCATCCCTCCTGTCACCATGACTTCCATCAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp TCCTCTGGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGGAACCTGGGCTCCTCTaGCTTCTTGGGGCGTGCTGG +
Preference number: 4 (lower is better)
Translates to: SSGISSAAQAVWLLKRSQEPGLL*LLGACW
Trigger: CCAGCACGCCCCAAGAAGCCAGAGGAGCCCAGGTTC...CTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCCAGAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp ATGATGGAAGTCATGGTGACAGGAGGGATGGGGTACTTGGAGGCTCCTGCCCAGTTGGCACGCGAAGTGTaGTTGCCTGTACGGTCTCCT +
Preference number: 4 (lower is better)
Translates to: MMEVMVTGGMGYLEAPAQLAREV*LPVRSP
Trigger: AGGAGACCGTACAGGCAACCACACTTCGCGTGCCAA...CTGGGCAGGAGCCTCCAAGTACCCCATCCCTCCTGTCACCATGACTTCCATCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp CCTAAGCTGTGGACATCAGTGGGTGTTCAACCCCTTGTTCTGGAGTTGGGGAGACCAGGAGGAACCTCCTaGTTAGGATCCACAGGGGGC +
Preference number: 4 (lower is better)
Translates to: PKLWTSVGVQPLVLELGRPGGTS*LGSTGG
Trigger: GCCCCCTGTGGATCCTAACCAGGAGGTTCCTCCTGG...TCTCCCCAACTCCAGAACAAGGGGTTGAACACCCACTGATGTCCACAGCTTAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp GTGTTCAACCCCTTGTTCTGGAGTTGGGGAGATGTGCACACTGAGGACAAGTGTCTAGAGTCTTTGAGCTaGGGGGTCCGGGGTGTGCGG +
Preference number: 4 (lower is better)
Translates to: VFNPLFWSWGDVHTEDKCLESLS*GVRGVR
Trigger: CCGCACACCCCGGACCCCCCAGCTCAAAGACTCTAG...ACACTTGTCCTCAGTGTGCACATCTCCCCAACTCCAGAACAAGGGGTTGAACAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp GTCCTCAATGCCCTTTCCCTCATGTCCAGACCTTCCAAGCAGCTTGCCTTCTTTGGCCTGCTGGAAGACTaGGAAGGGCACCGCTTCCTG +
Preference number: 4 (lower is better)
Translates to: VLNALSLMSRPSKQLAFFGLLED*EGHRFL
Trigger: CAGGAAGCGGTGCCCTTCCCAGTCTTCCAGCAGGCC...AAAGAAGGCAAGCTGCTTGGAAGGTCTGGACATGAGGGAAAGGGCATTGAGGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR CAA 72 bp CAATTATGTTTACAACAGTCTGAAGCAAACTTGGCCTaGGGGTTTCCCAGGGCTTGGCTGGGCGGGGCGGGG +
Preference number: 4 (lower is better)
Translates to: QLCLQQSEANLA*GFPRAWLGGAG
Trigger: CCCCGCCCCGCCCAGCCAAGCCCTGGGAAACCCCAAGGCCAAGTTTGCTTCAGACTGTTGTAAACATAATTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR GCA 90 bp CCTAAGCTGTGGACATCAGTGGGTGTTCAACCCCTTGTTCTGGAGTTGGGGAGAGTCTCATCCTGGTCGTaGCAGGCAGGCTCCACTTTG +
Preference number: 4 (lower is better)
Translates to: PKLWTSVGVQPLVLELGRVSSWS*QAGSTL
Trigger: CAAAGTGGAGCCTGCCTGGCACGACCAGGATGAGAC...TCTCCCCAACTCCAGAACAAGGGGTTGAACACCCACTGATGTCCACAGCTTAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR GCA 90 bp GTCCTCAATGCCCTTTCCCTCATGTCCAGACCTTCCAAGCAGCTTGCCTTCTTTCTCTCCGCTGCCTCCTaGTACCACTGGGTGTCGCTT +
Preference number: 4 (lower is better)
Translates to: VLNALSLMSRPSKQLAFFLSAAS*YHWVSL
Trigger: AAGCGACACCCAGTGGTAGCAGGAGGCAGCGGAGAG...AAAGAAGGCAAGCTGCTTGGAAGGTCTGGACATGAGGGAAAGGGCATTGAGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR GCA 90 bp GTCCTCAATGCCCTTTCCCTCATGTCCAGACCTTCCAAGCAGCTTGCCTTCTTTCTCCCTTTCTTCTTCTaGCCGCCTCGCTGGCAGTCC +
Preference number: 4 (lower is better)
Translates to: VLNALSLMSRPSKQLAFFLPFFF*PPRWQS
Trigger: GGACTGCCAGCGAGGCGGGCAGAAGAAGAAAGGGAG...AAAGAAGGCAAGCTGCTTGGAAGGTCTGGACATGAGGGAAAGGGCATTGAGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp CCTAAGCTGTGGACATCAGTGGGTGTTCAACCCCTTGTTCTGGAGTTGGGGAGATGGAGCAGAAGGTTCTaGAGGCGGCTGTCCGTTCAC +
Preference number: 4 (lower is better)
Translates to: PKLWTSVGVQPLVLELGRWSRRF*RRLSVH
Trigger: GTGAACGGACAGCCGCCTCCAGAACCTTCTGCTCCA...TCTCCCCAACTCCAGAACAAGGGGTTGAACACCCACTGATGTCCACAGCTTAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp TCCTCTGGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGATGTCTTGGTTCCTGTaGGCGAGTGGGACGGGAGGC +
Preference number: 4 (lower is better)
Translates to: SSGISSAAQAVWLLKRSQMSWFL*ASGTGG
Trigger: GCCTCCCGTCCCACTCGCCCACAGGAACCAAGACAT...CTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCCAGAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp AAGCTGTGGACATCAGTGGGTGTTCAACCCCTTGTTCTGGAGTTGGGGAGATGTCTCGATGTCTCATCCTaGTCGTGCCAGGCAGGCTCC +
Preference number: 4 (lower is better)
Translates to: KLWTSVGVQPLVLELGRCLDVSS*SCQAGS
Trigger: GGAGCCTGCCTGGCACGACCAGGATGAGACATCGAG...ACATCTCCCCAACTCCAGAACAAGGGGTTGAACACCCACTGATGTCCACAGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp GTCCTCAATGCCCTTTCCCTCATGTCCAGACCTTCCAAGCAGCTTGCCTTCTTTCTCGATGTCTCATCCTaGTCGTGCCAGGCAGGCTCC +
Preference number: 4 (lower is better)
Translates to: VLNALSLMSRPSKQLAFFLDVSS*SCQAGS
Trigger: GGAGCCTGCCTGGCACGACCAGGATGAGACATCGAG...AAAGAAGGCAAGCTGCTTGGAAGGTCTGGACATGAGGGAAAGGGCATTGAGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp GGCTCAAAGTTTTCTTCTGCCTCTGCCGTAACCATGGCTGGAGGAGAGGGTGGGCTCCTCTGTTTTTGTTaGCACTGGGGTGACTGCACG +
Preference number: 4 (lower is better)
Translates to: GSKFSSASAVTMAGGEGGLLCFC*HWGDCT
Trigger: CGTGCAGTCACCCCAGTGCCAACAAAAACAGAGGAG...CCCACCCTCTCCTCCAGCCATGGTTACGGCAGAGGCAGAAGAAAACTTTGAGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp GTCCTCAATGCCCTTTCCCTCATGTCCAGACCTTCCAAGCAGCTTGCCTTCTTTCCAGGAGGAACCTCCTaGTTAGGATCCACAGGGGGC +
Preference number: 4 (lower is better)
Translates to: VLNALSLMSRPSKQLAFFPGGTS*LGSTGG
Trigger: GCCCCCTGTGGATCCTAACCAGGAGGTTCCTCCTGG...AAAGAAGGCAAGCTGCTTGGAAGGTCTGGACATGAGGGAAAGGGCATTGAGGAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp GGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGGTATACCTAGAGTCTTTGAGCTaGGGGGTCCGGGGTGTGCGG +
Preference number: 4 (lower is better)
Translates to: GISSAAQAVWLLKRSQVYLESLS*GVRGVR
Trigger: CCGCACACCCCGGACCCCCCAGCTCAAAGACTCTAG...GTATACCTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp GGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGGTATACCAGTGGCAGGCCTGCTaGAAGACTGGGAAGGGCACC +
Preference number: 4 (lower is better)
Translates to: GISSAAQAVWLLKRSQVYQWQAC*KTGKGT
Trigger: GGTGCCCTTCCCAGTCTTCCAGCAGGCCTGCCACTG...GTATACCTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR TCA 90 bp GAGCAGGGCCAGGCAGCCTTCCCTCCGAGTAGCAAATCTGCTCTGAGGCTCACACAAACTCTGGGCAGTTaGGAAGCTGAGAAAAATCAG +
Preference number: 4 (lower is better)
Translates to: EQGQAAFPPSSKSALRLTQTLGS*EAEKNQ
Trigger: CTGATTTTTCTCAGCTTCTCAACTGCCCAGAGTTTG...TGTGAGCCTCAGAGCAGATTTGCTACTCGGAGGGAAGGCTGCCTGGCCCTGCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR GCA 90 bp GTGTTCAACCCCTTGTTCTGGAGTTGGGGAGATGTGCACACTGAGGACAAGTGTGTCTCATCCTGGTCGTaGCAGGCAGGCTCCACTTTG +
Preference number: 4 (lower is better)
Translates to: VFNPLFWSWGDVHTEDKCVSSWS*QAGSTL
Trigger: CAAAGTGGAGCCTGCCTGGCACGACCAGGATGAGAC...ACACTTGTCCTCAGTGTGCACATCTCCCCAACTCCAGAACAAGGGGTTGAACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR GCA 90 bp GTCCTCAATGCCCTTTCCCTCATGTCCAGACCTTCCAAGCAGCTTGCCTTCTTTACGGGGAGAGCCAGGTaGCGACTCTGTCTCTTTCTG +
Preference number: 4 (lower is better)
Translates to: VLNALSLMSRPSKQLAFFTGRAR*RLCLFL
Trigger: CAGAAAGAGACAGAGTCGGCACCTGGCTCTCCCCGT...AAAGAAGGCAAGCTGCTTGGAAGGTCTGGACATGAGGGAAAGGGCATTGAGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR GCA 90 bp AAGCTGTGGACATCAGTGGGTGTTCAACCCCTTGTTCTGGAGTTGGGGAGATGTGGGTACAGCCATAGCTaGCGACTGCAGGTGTTCCCT +
Preference number: 4 (lower is better)
Translates to: KLWTSVGVQPLVLELGRCGYSHS*RLQVFP
Trigger: AGGGAACACCTGCAGTCGGCAGCTATGGCTGTACCC...ACATCTCCCCAACTCCAGAACAAGGGGTTGAACACCCACTGATGTCCACAGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR GCA 90 bp TCCTCTGGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGCCTGAGACTGGCCAATaGCCAAGCGCTTCCGCTCAT +
Preference number: 4 (lower is better)
Translates to: SSGISSAAQAVWLLKRSQPETGQ*PSASAH
Trigger: ATGAGCGGAAGCGCTTGGGCATTGGCCAGTCTCAGG...CTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCCAGAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR GCA 90 bp GTCCTCAATGCCCTTTCCCTCATGTCCAGACCTTCCAAGCAGCTTGCCTTCTTTCCTGAGACTGGCCAATaGCCAAGCGCTTCCGCTCAT +
Preference number: 4 (lower is better)
Translates to: VLNALSLMSRPSKQLAFFPETGQ*PSASAH
Trigger: ATGAGCGGAAGCGCTTGGGCATTGGCCAGTCTCAGG...AAAGAAGGCAAGCTGCTTGGAAGGTCTGGACATGAGGGAAAGGGCATTGAGGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR GCA 90 bp ACCCTTAGAGAATGGTACCTTTTCTCCACCTCCTTGAGGTCAAAGGTCGTTAAGAAGGGCACCGCTTCCTaGCCTCTCCGCTGCCTCCTG +
Preference number: 4 (lower is better)
Translates to: TLREWYLFSTSLRSKVVKKGTAS*PLRCLL
Trigger: CAGGAGGCAGCGGAGAGGGCAGGAAGCGGTGCCCTT...CTTAACGACCTTTGACCTCAAGGAGGTGGAGAAAAGGTACCATTCTCTAAGGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp GGCTCAAAGTTTTCTTCTGCCTCTGCCGTAACCATGGCTGGAGGAGAGGGTGGGCATGTCCTTCTTAGGTaGCAACTTACGAGCAGGCTG +
Preference number: 4 (lower is better)
Translates to: GSKFSSASAVTMAGGEGGHVLLR*QLTSRL
Trigger: CAGCCTGCTCGTAAGTTGCCACCTAAGAAGGACATG...CCCACCCTCTCCTCCAGCCATGGTTACGGCAGAGGCAGAAGAAAACTTTGAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp GGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGGTATACTTCTGCCCGCCTCGCTaGCAGTCCTCATCCCCATTC +
Preference number: 4 (lower is better)
Translates to: GISSAAQAVWLLKRSQVYFCPPR*QSSSPF
Trigger: GAATGGGGATGAGGACTGCCAGCGAGGCGGGCAGAA...GTATACCTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp GGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGGTATACATGTCTTGGTTCCTGTaGGCGAGTGGGACGGGAGGC +
Preference number: 4 (lower is better)
Translates to: GISSAAQAVWLLKRSQVYMSWFL*ASGTGG
Trigger: GCCTCCCGTCCCACTCGCCCACAGGAACCAAGACAT...GTATACCTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp GTGTTCAACCCCTTGTTCTGGAGTTGGGGAGATGTGCACACTGAGGACAAGTGTAGGCAGGCTCCACTTTaGTCTCTGGTTGCCAGGCTG +
Preference number: 4 (lower is better)
Translates to: VFNPLFWSWGDVHTEDKCRQAPL*SLVARL
Trigger: CAGCCTGGCAACCAGAGACCAAAGTGGAGCCTGCCT...ACACTTGTCCTCAGTGTGCACATCTCCCCAACTCCAGAACAAGGGGTTGAACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp AAGCTGTGGACATCAGTGGGTGTTCAACCCCTTGTTCTGGAGTTGGGGAGATGTTGGCAGACAGGCCCTTaGGAAGGGTCTTCAGGTTGC +
Preference number: 4 (lower is better)
Translates to: KLWTSVGVQPLVLELGRCWQTGP*EGSSGC
Trigger: GCAACCTGAAGACCCTTCCCAAGGGCCTGTCTGCCA...ACATCTCCCCAACTCCAGAACAAGGGGTTGAACACCCACTGATGTCCACAGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp GTCCTCAATGCCCTTTCCCTCATGTCCAGACCTTCCAAGCAGCTTGCCTTCTTTCTCAGAATCCAGATCTaGGAGGCTGGCAGACAGGCC +
Preference number: 4 (lower is better)
Translates to: VLNALSLMSRPSKQLAFFLRIQI*EAGRQA
Trigger: GGCCTGTCTGCCAGCCTCCCAGATCTGGATTCTGAG...AAAGAAGGCAAGCTGCTTGGAAGGTCTGGACATGAGGGAAAGGGCATTGAGGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp GTCCTCAATGCCCTTTCCCTCATGTCCAGACCTTCCAAGCAGCTTGCCTTCTTTTTGTTGGAACCGAGGTaGCCCAGGAGGAACCTCCTG +
Preference number: 4 (lower is better)
Translates to: VLNALSLMSRPSKQLAFFLLEPR*PRRNLL
Trigger: CAGGAGGTTCCTCCTGGGCCACCTCGGTTCCAACAA...AAAGAAGGCAAGCTGCTTGGAAGGTCTGGACATGAGGGAAAGGGCATTGAGGAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp CACACACACACACACTCCCACCCCTCCTCAGCCTGTGTTGAGATGATAGCCTTGTCAGTAGGAACTTGTTaGAACCGAGGTGGCCCAGGA +
Preference number: 4 (lower is better)
Translates to: HTHTHSHPSSACVEMIALSVGTC*NRGGPG
Trigger: TCCTGGGCCACCTCGGTTCCAACAAGTTCCTACTGA...CAAGGCTATCATCTCAACACAGGCTGAGGAGGGGTGGGAGTGTGTGTGTGTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp CACACACACACACACTCCCACCCCTCCTCAGCCTGTGTTGAGATGATAGCCTTGACCTGTAGCCTTCTTTaGCATCCTCCAGTGCGAGCT +
Preference number: 4 (lower is better)
Translates to: HTHTHSHPSSACVEMIALTCSLL*HPPVRA
Trigger: AGCTCGCACTGGAGGATGCCAAAGAAGGCTACAGGT...CAAGGCTATCATCTCAACACAGGCTGAGGAGGGGTGGGAGTGTGTGTGTGTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp GTCCTCAATGCCCTTTCCCTCATGTCCAGACCTTCCAAGCAGCTTGCCTTCTTTACTGGGTGTCGCTTGTaGTTGCCTTCCTCGCCCATG +
Preference number: 4 (lower is better)
Translates to: VLNALSLMSRPSKQLAFFTGCRL*LPSSPM
Trigger: CATGGGCGAGGAAGGCAACCACAAGCGACACCCAGT...AAAGAAGGCAAGCTGCTTGGAAGGTCTGGACATGAGGGAAAGGGCATTGAGGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp CACACACACACACACTCCCACCCCTCCTCAGCCTGTGTTGAGATGATAGCCTTGGCTGGCTTGTCCATTTaGCATCTTCTCGAGTGGCCT +
Preference number: 4 (lower is better)
Translates to: HTHTHSHPSSACVEMIALAGLSI*HLLEWP
Trigger: AGGCCACTCGAGAAGATGCCAAATGGACAAGCCAGC...CAAGGCTATCATCTCAACACAGGCTGAGGAGGGGTGGGAGTGTGTGTGTGTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
3UTR CAA 72 bp GACCTAAGCTGTGGACATCAGTGGGTGTTCAACCCCTaGTTCTGGAGTTGGGGAGATGTGCACACTGAGGAC +
Preference number: 4 (lower is better)
Translates to: DLSCGHQWVFNP*FWSWGDVHTED
Trigger: GTCCTCAGTGTGCACATCTCCCCAACTCCAGAACAAGGGGTTGAACACCCACTGATGTCCACAGCTTAGGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR TCA 90 bp ATGATGGAAGTCATGGTGACAGGAGGGATGGGGTACTTGGAGGCTCCTGCCCAGTCTTCTTGCTCATCCTaGTCCTTAGACATCAGCTGC +
Preference number: 4 (lower is better)
Translates to: MMEVMVTGGMGYLEAPAQSSCSS*SLDISC
Trigger: GCAGCTGATGTCTAAGGATCAGGATGAGCAAGAAGA...CTGGGCAGGAGCCTCCAAGTACCCCATCCCTCCTGTCACCATGACTTCCATCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR TCA 90 bp GTGTTCAACCCCTTGTTCTGGAGTTGGGGAGATGTGCACACTGAGGACAAGTGTCTGGAACTTGGGCAGTaGCTGAGGGGTACAGCCATA +
Preference number: 4 (lower is better)
Translates to: VFNPLFWSWGDVHTEDKCLELGQ*LRGTAI
Trigger: TATGGCTGTACCCCTCAGTCACTGCCCAAGTTCCAG...ACACTTGTCCTCAGTGTGCACATCTCCCCAACTCCAGAACAAGGGGTTGAACAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR GCA 90 bp CACACACACACACACTCCCACCCCTCCTCAGCCTGTGTTGAGATGATAGCCTTGTTTGGCATCCTCCAGTaGGAGCTGCTTGAACTCTTC +
Preference number: 4 (lower is better)
Translates to: HTHTHSHPSSACVEMIALFGILQ*ELLELF
Trigger: GAAGAGTTCAAGCAGCTCGCACTGGAGGATGCCAAA...CAAGGCTATCATCTCAACACAGGCTGAGGAGGGGTGGGAGTGTGTGTGTGTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp GTCCTCAATGCCCTTTCCCTCATGTCCAGACCTTCCAAGCAGCTTGCCTTCTTTAGGCTTGTGGGACTGTaGCTGCACACTTTTGTGGGC +
Preference number: 4 (lower is better)
Translates to: VLNALSLMSRPSKQLAFFRLVGL*LHTFVG
Trigger: GCCCACAAAAGTGTGCAGCCACAGTCCCACAAGCCT...AAAGAAGGCAAGCTGCTTGGAAGGTCTGGACATGAGGGAAAGGGCATTGAGGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp AAGCTGTGGACATCAGTGGGTGTTCAACCCCTTGTTCTGGAGTTGGGGAGATGTAGGCTTGTGGGACTGTaGCTGCACACTTTTGTGGGC +
Preference number: 4 (lower is better)
Translates to: KLWTSVGVQPLVLELGRCRLVGL*LHTFVG
Trigger: GCCCACAAAAGTGTGCAGCCACAGTCCCACAAGCCT...ACATCTCCCCAACTCCAGAACAAGGGGTTGAACACCCACTGATGTCCACAGCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp ATGATGGAAGTCATGGTGACAGGAGGGATGGGGTACTTGGAGGCTCCTGCCCAGAGGCCAATTTCTCTCTaGGTACTTCGGGCTTCATGT +
Preference number: 4 (lower is better)
Translates to: MMEVMVTGGMGYLEAPAQRPISL*VLRASC
Trigger: ACATGAAGCCCGAAGTACCCAGAGAGAAATTGGCCT...CTGGGCAGGAGCCTCCAAGTACCCCATCCCTCCTGTCACCATGACTTCCATCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp AAGCTGTGGACATCAGTGGGTGTTCAACCCCTTGTTCTGGAGTTGGGGAGATGTTGGGGGTCCAGGCAGTaGCCACTTTTCAGGTTCTTC +
Preference number: 4 (lower is better)
Translates to: KLWTSVGVQPLVLELGRCWGSRQ*PLFRFF
Trigger: GAAGAACCTGAAAAGTGGCCACTGCCTGGACCCCCA...ACATCTCCCCAACTCCAGAACAAGGGGTTGAACACCCACTGATGTCCACAGCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp GGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGGTATACCTCAGAATCCAGATCTaGGAGGCTGGCAGACAGGCC +
Preference number: 4 (lower is better)
Translates to: GISSAAQAVWLLKRSQVYLRIQI*EAGRQA
Trigger: GGCCTGTCTGCCAGCCTCCCAGATCTGGATTCTGAG...GTATACCTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp ACCCTTAGAGAATGGTACCTTTTCTCCACCTCCTTGAGGTCAAAGGTCGTTAAGGCTCCTCTGGCTTCTTaGGGCGTGCTGGTGAGGGTC +
Preference number: 4 (lower is better)
Translates to: TLREWYLFSTSLRSKVVKAPLAS*GVLVRV
Trigger: GACCCTCACCAGCACGCCCCAAGAAGCCAGAGGAGC...CTTAACGACCTTTGACCTCAAGGAGGTGGAGAAAAGGTACCATTCTCTAAGGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp GTGTTCAACCCCTTGTTCTGGAGTTGGGGAGATGTGCACACTGAGGACAAGTGTTTGGCACGCGAAGTGTaGTTGCCTGTACGGTCTCCT +
Preference number: 4 (lower is better)
Translates to: VFNPLFWSWGDVHTEDKCLAREV*LPVRSP
Trigger: AGGAGACCGTACAGGCAACCACACTTCGCGTGCCAA...ACACTTGTCCTCAGTGTGCACATCTCCCCAACTCCAGAACAAGGGGTTGAACAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp TCCTCTGGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGACGGGCAATGGTAGATaGCTCGGGAGCACCAAACAG +
Preference number: 4 (lower is better)
Translates to: SSGISSAAQAVWLLKRSQTGNGR*LGSTKQ
Trigger: CTGTTTGGTGCTCCCGAGCCATCTACCATTGCCCGT...CTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCCAGAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp CCTAAGCTGTGGACATCAGTGGGTGTTCAACCCCTTGTTCTGGAGTTGGGGAGAGAGACTCTGGGACAGTaGTTGGTAGAGAACGGGCAA +
Preference number: 4 (lower is better)
Translates to: PKLWTSVGVQPLVLELGRETLGQ*LVENGQ
Trigger: TTGCCCGTTCTCTACCAACCACTGTCCCAGAGTCTC...TCTCCCCAACTCCAGAACAAGGGGTTGAACACCCACTGATGTCCACAGCTTAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp CACACACACACACACTCCCACCCCTCCTCAGCCTGTGTTGAGATGATAGCCTTGGGCATTTCGGTAGTTTaGAGACTCTGGGACAGTGGT +
Preference number: 4 (lower is better)
Translates to: HTHTHSHPSSACVEMIALGISVV*RLWDSG
Trigger: ACCACTGTCCCAGAGTCTCCAAACTACCGAAATGCC...CAAGGCTATCATCTCAACACAGGCTGAGGAGGGGTGGGAGTGTGTGTGTGTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp ACCCTTAGAGAATGGTACCTTTTCTCCACCTCCTTGAGGTCAAAGGTCGTTAAGCAGTGGCAGGCCTGCTaGAAGACTGGGAAGGGCACC +
Preference number: 4 (lower is better)
Translates to: TLREWYLFSTSLRSKVVKQWQAC*KTGKGT
Trigger: GGTGCCCTTCCCAGTCTTCCAGCAGGCCTGCCACTG...CTTAACGACCTTTGACCTCAAGGAGGTGGAGAAAAGGTACCATTCTCTAAGGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR TCA 90 bp GTGTTCAACCCCTTGTTCTGGAGTTGGGGAGATGTGCACACTGAGGACAAGTGTCTTCAGACCAGGCAGTaGAGGTATTCTTCCGCCCAT +
Preference number: 4 (lower is better)
Translates to: VFNPLFWSWGDVHTEDKCLQTRQ*RYSSAH
Trigger: ATGGGCGGAAGAATACCTTCACTGCCTGGTCTGAAG...ACACTTGTCCTCAGTGTGCACATCTCCCCAACTCCAGAACAAGGGGTTGAACAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR TCA 90 bp GGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGGTATACAGGGTGTTCATCTCCTaGGACTGGCCAATGCCCAAG +
Preference number: 4 (lower is better)
Translates to: GISSAAQAVWLLKRSQVYRVFIS*DWPMPK
Trigger: CTTGGGCATTGGCCAGTCTCAGGAGATGAACACCCT...GTATACCTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR GCA 90 bp GGCTCAAAGTTTTCTTCTGCCTCTGCCGTAACCATGGCTGGAGGAGAGGGTGGGTGTAGGCCAGTTGACTaGATCTCCAAAATCACCAAC +
Preference number: 4 (lower is better)
Translates to: GSKFSSASAVTMAGGEGGCRPVD*ISKITN
Trigger: GTTGGTGATTTTGGAGATGCAGTCAACTGGCCTACA...CCCACCCTCTCCTCCAGCCATGGTTACGGCAGAGGCAGAAGAAAACTTTGAGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR GCA 90 bp GTGTTCAACCCCTTGTTCTGGAGTTGGGGAGATGTGCACACTGAGGACAAGTGTTCATATACTTGTGGGTaGGGGGCCCCTCTGTACCAT +
Preference number: 4 (lower is better)
Translates to: VFNPLFWSWGDVHTEDKCSYTCG*GAPLYH
Trigger: ATGGTACAGAGGGGCCCCGCACCCACAAGTATATGA...ACACTTGTCCTCAGTGTGCACATCTCCCCAACTCCAGAACAAGGGGTTGAACAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR GCA 90 bp AAGCTGTGGACATCAGTGGGTGTTCAACCCCTTGTTCTGGAGTTGGGGAGATGTTTCCGCCCATCCATCTaGTCCATCTCCTCGTCAAAC +
Preference number: 4 (lower is better)
Translates to: KLWTSVGVQPLVLELGRCFRPSI*SISSSN
Trigger: GTTTGACGAGGAGATGGAGCAGATGGATGGGCGGAA...ACATCTCCCCAACTCCAGAACAAGGGGTTGAACACCCACTGATGTCCACAGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR GCA 90 bp GTCCTCAATGCCCTTTCCCTCATGTCCAGACCTTCCAAGCAGCTTGCCTTCTTTTTCCGCCCATCCATCTaGTCCATCTCCTCGTCAAAC +
Preference number: 4 (lower is better)
Translates to: VLNALSLMSRPSKQLAFFFRPSI*SISSSN
Trigger: GTTTGACGAGGAGATGGAGCAGATGGATGGGCGGAA...AAAGAAGGCAAGCTGCTTGGAAGGTCTGGACATGAGGGAAAGGGCATTGAGGAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR GCA 90 bp CCTAAGCTGTGGACATCAGTGGGTGTTCAACCCCTTGTTCTGGAGTTGGGGAGATTTGGCATCCTCCAGTaGGAGCTGCTTGAACTCTTC +
Preference number: 4 (lower is better)
Translates to: PKLWTSVGVQPLVLELGRFGILQ*ELLELF
Trigger: GAAGAGTTCAAGCAGCTCGCACTGGAGGATGCCAAA...TCTCCCCAACTCCAGAACAAGGGGTTGAACACCCACTGATGTCCACAGCTTAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR GCA 90 bp CACACACACACACACTCCCACCCCTCCTCAGCCTGTGTTGAGATGATAGCCTTGCTAAGCGGCGGAATTTaGCGAGGTATTCTTGCAGTT +
Preference number: 4 (lower is better)
Translates to: HTHTHSHPSSACVEMIALLSGGI*RGILAV
Trigger: AACTGCAAGAATACCTCGGCAAATTCCGCCGCTTAG...CAAGGCTATCATCTCAACACAGGCTGAGGAGGGGTGGGAGTGTGTGTGTGTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp TCCTCTGGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGTGTTTTTGTTGGCACTaGGGTGACTGCACGGGGAGA +
Preference number: 4 (lower is better)
Translates to: SSGISSAAQAVWLLKRSQCFCWH*GDCTGR
Trigger: TCTCCCCGTGCAGTCACCCCAGTGCCAACAAAAACA...CTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCCAGAGGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp AAGCTGTGGACATCAGTGGGTGTTCAACCCCTTGTTCTGGAGTTGGGGAGATGTCTCCTCTGTTTTTGTTaGCACTGGGGTGACTGCACG +
Preference number: 4 (lower is better)
Translates to: KLWTSVGVQPLVLELGRCLLCFC*HWGDCT
Trigger: CGTGCAGTCACCCCAGTGCCAACAAAAACAGAGGAG...ACATCTCCCCAACTCCAGAACAAGGGGTTGAACACCCACTGATGTCCACAGCTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp GTGTTCAACCCCTTGTTCTGGAGTTGGGGAGATGTGCACACTGAGGACAAGTGTTCAGTAGGAACTTGTTaGAACCGAGGTGGCCCAGGA +
Preference number: 4 (lower is better)
Translates to: VFNPLFWSWGDVHTEDKCSVGTC*NRGGPG
Trigger: TCCTGGGCCACCTCGGTTCCAACAAGTTCCTACTGA...ACACTTGTCCTCAGTGTGCACATCTCCCCAACTCCAGAACAAGGGGTTGAACAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp AAGCTGTGGACATCAGTGGGTGTTCAACCCCTTGTTCTGGAGTTGGGGAGATGTACCTGTAGCCTTCTTTaGCATCCTCCAGTGCGAGCT +
Preference number: 4 (lower is better)
Translates to: KLWTSVGVQPLVLELGRCTCSLL*HPPVRA
Trigger: AGCTCGCACTGGAGGATGCCAAAGAAGGCTACAGGT...ACATCTCCCCAACTCCAGAACAAGGGGTTGAACACCCACTGATGTCCACAGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp CCTAAGCTGTGGACATCAGTGGGTGTTCAACCCCTTGTTCTGGAGTTGGGGAGAAGTGTGTCCGAGTGCTaGCTTGTCCATTTGGCATCT +
Preference number: 4 (lower is better)
Translates to: PKLWTSVGVQPLVLELGRSVSEC*LVHLAS
Trigger: AGATGCCAAATGGACAAGCCAGCACTCGGACACACT...TCTCCCCAACTCCAGAACAAGGGGTTGAACACCCACTGATGTCCACAGCTTAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR TCA 90 bp GGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGGTATACAGGGCCTGTACACGGTaGAAGGAAGCAATAAGGGTG +
Preference number: 4 (lower is better)
Translates to: GISSAAQAVWLLKRSQVYRACTR*KEAIRV
Trigger: CACCCTTATTGCTTCCTTTCACCGTGTACAGGCCCT...GTATACCTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR TCA 90 bp GTCCTCAATGCCCTTTCCCTCATGTCCAGACCTTCCAAGCAGCTTGCCTTCTTTGGGTCTTCAGGTTGCTaGCCTCCTCTGTTTTTGTTG +
Preference number: 4 (lower is better)
Translates to: VLNALSLMSRPSKQLAFFGSSGC*PPLFLL
Trigger: CAACAAAAACAGAGGAGGTCAGCAACCTGAAGACCC...AAAGAAGGCAAGCTGCTTGGAAGGTCTGGACATGAGGGAAAGGGCATTGAGGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR TCA 90 bp GGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGGTATACCTTCAGACCAGGCAGTaGAGGTATTCTTCCGCCCAT +
Preference number: 4 (lower is better)
Translates to: GISSAAQAVWLLKRSQVYLQTRQ*RYSSAH
Trigger: ATGGGCGGAAGAATACCTTCACTGCCTGGTCTGAAG...GTATACCTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR TCA 90 bp GGCTCAAAGTTTTCTTCTGCCTCTGCCGTAACCATGGCTGGAGGAGAGGGTGGGTTTCCACTTCTTGCTTaGTCTGTGAATACTCAGGCT +
Preference number: 4 (lower is better)
Translates to: GSKFSSASAVTMAGGEGGFPLLA*SVNTQA
Trigger: AGCCTGAGTATTCACAGATCAAGCAAGAAGTGGAAA...CCCACCCTCTCCTCCAGCCATGGTTACGGCAGAGGCAGAAGAAAACTTTGAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR TCA 90 bp AAGCTGTGGACATCAGTGGGTGTTCAACCCCTTGTTCTGGAGTTGGGGAGATGTTGCAGGTGTTCCCTCTaGAGGACTGGAGCTAATAGA +
Preference number: 4 (lower is better)
Translates to: KLWTSVGVQPLVLELGRCCRCSL*RTGANR
Trigger: TCTATTAGCTCCAGTCCTTCAGAGGGAACACCTGCA...ACATCTCCCCAACTCCAGAACAAGGGGTTGAACACCCACTGATGTCCACAGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR TCA 90 bp TCCTCTGGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGTGCAGGTGTTCCCTCTaGAGGACTGGAGCTAATAGA +
Preference number: 4 (lower is better)
Translates to: SSGISSAAQAVWLLKRSQCRCSL*RTGANR
Trigger: TCTATTAGCTCCAGTCCTTCAGAGGGAACACCTGCA...CTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCCAGAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR TCA 90 bp CACACACACACACACTCCCACCCCTCCTCAGCCTGTGTTGAGATGATAGCCTTGCCAGTGCGAGCTGCTTaGACTCTTCATACATCTTTT +
Preference number: 4 (lower is better)
Translates to: HTHTHSHPSSACVEMIALPVRAA*TLHTSF
Trigger: AAAAGATGTATGAAGAGTTCAAGCAGCTCGCACTGG...CAAGGCTATCATCTCAACACAGGCTGAGGAGGGGTGGGAGTGTGTGTGTGTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR TCA 90 bp AAGCTGTGGACATCAGTGGGTGTTCAACCCCTTGTTCTGGAGTTGGGGAGATGTCCTCCTGGAAATCCTTaGATATGTCCAGCCGGAACT +
Preference number: 4 (lower is better)
Translates to: KLWTSVGVQPLVLELGRCPPGNP*ICPAGT
Trigger: AGTTCCGGCTGGACATATTCAAGGATTTCCAGGAGG...ACATCTCCCCAACTCCAGAACAAGGGGTTGAACACCCACTGATGTCCACAGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR GCA 90 bp GTCCTCAATGCCCTTTCCCTCATGTCCAGACCTTCCAAGCAGCTTGCCTTCTTTTTGTGGGACTGTGGCTaGACACTTTTGTGGGCTATC +
Preference number: 4 (lower is better)
Translates to: VLNALSLMSRPSKQLAFFLWDCG*TLLWAI
Trigger: GATAGCCCACAAAAGTGTGCAGCCACAGTCCCACAA...AAAGAAGGCAAGCTGCTTGGAAGGTCTGGACATGAGGGAAAGGGCATTGAGGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR GCA 90 bp ATGATGGAAGTCATGGTGACAGGAGGGATGGGGTACTTGGAGGCTCCTGCCCAGGGCTTCATGTCTATTTaGAATGGAACCCACTTGTGT +
Preference number: 4 (lower is better)
Translates to: MMEVMVTGGMGYLEAPAQGFMSI*NGTHLC
Trigger: ACACAAGTGGGTTCCATTGCAAATAGACATGAAGCC...CTGGGCAGGAGCCTCCAAGTACCCCATCCCTCCTGTCACCATGACTTCCATCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR GCA 90 bp GGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGGTATACTCATATACTTGTGGGTaGGGGGCCCCTCTGTACCAT +
Preference number: 4 (lower is better)
Translates to: GISSAAQAVWLLKRSQVYSYTCG*GAPLYH
Trigger: ATGGTACAGAGGGGCCCCGCACCCACAAGTATATGA...GTATACCTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR GCA 90 bp GGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGGTATACCAGGTTCTTCCCTCCTaGGGACTTTCTCCTCAACCA +
Preference number: 4 (lower is better)
Translates to: GISSAAQAVWLLKRSQVYQVLPS*GLSPQP
Trigger: TGGTTGAGGAGAAAGTCCGCAGGAGGGAAGAACCTG...GTATACCTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp TCCTCTGGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGGGCTGCACACTTTTGTaGGCTATCTCTCCAGGTGTA +
Preference number: 4 (lower is better)
Translates to: SSGISSAAQAVWLLKRSQGCTLL*AISPGV
Trigger: TACACCTGGAGAGATAGCCCACAAAAGTGTGCAGCC...CTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCCAGAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp GAGCAGGGCCAGGCAGCCTTCCCTCCGAGTAGCAAATCTGCTCTGAGGCTCACACATGTCTATTTGCAATaGAACCCACTTGTGTTTGTT +
Preference number: 4 (lower is better)
Translates to: EQGQAAFPPSSKSALRLTHVYLQ*NPLVFV
Trigger: AACAAACACAAGTGGGTTCCATTGCAAATAGACATG...TGTGAGCCTCAGAGCAGATTTGCTACTCGGAGGGAAGGCTGCCTGGCCCTGCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071487.13
CDS-3UTR CCA 90 bp ACCCTTAGAGAATGGTACCTTTTCTCCACCTCCTTGAGGTCAAAGGTCGTTAAGAGGCAGGCTCCACTTTaGTCTCTGGTTGCCAGGCTG +
Preference number: 4 (lower is better)
Translates to: TLREWYLFSTSLRSKVVKRQAPL*SLVARL
Trigger: CAGCCTGGCAACCAGAGACCAAAGTGGAGCCTGCCT...CTTAACGACCTTTGACCTCAAGGAGGTGGAGAAAAGGTACCATTCTCTAAGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp ACCCTTAGAGAATGGTACCTTTTCTCCACCTCCTTGAGGTCAAAGGTCGTTAAGTGGCAGACAGGCCCTTaGGAAGGGTCTTCAGGTTGC +
Preference number: 4 (lower is better)
Translates to: TLREWYLFSTSLRSKVVKWQTGP*EGSSGC
Trigger: GCAACCTGAAGACCCTTCCCAAGGGCCTGTCTGCCA...CTTAACGACCTTTGACCTCAAGGAGGTGGAGAAAAGGTACCATTCTCTAAGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp ACCCTTAGAGAATGGTACCTTTTCTCCACCTCCTTGAGGTCAAAGGTCGTTAAGTTGTTGGAACCGAGGTaGCCCAGGAGGAACCTCCTG +
Preference number: 4 (lower is better)
Translates to: TLREWYLFSTSLRSKVVKLLEPR*PRRNLL
Trigger: CAGGAGGTTCCTCCTGGGCCACCTCGGTTCCAACAA...CTTAACGACCTTTGACCTCAAGGAGGTGGAGAAAAGGTACCATTCTCTAAGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp TCCTCTGGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGGGCATTTCGGTAGTTTaGAGACTCTGGGACAGTGGT +
Preference number: 4 (lower is better)
Translates to: SSGISSAAQAVWLLKRSQGISVV*RLWDSG
Trigger: ACCACTGTCCCAGAGTCTCCAAACTACCGAAATGCC...CTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCCAGAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp GTCCTCAATGCCCTTTCCCTCATGTCCAGACCTTCCAAGCAGCTTGCCTTCTTTAGTGTGTCCGAGTGCTaGCTTGTCCATTTGGCATCT +
Preference number: 4 (lower is better)
Translates to: VLNALSLMSRPSKQLAFFSVSEC*LVHLAS
Trigger: AGATGCCAAATGGACAAGCCAGCACTCGGACACACT...AAAGAAGGCAAGCTGCTTGGAAGGTCTGGACATGAGGGAAAGGGCATTGAGGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR TCA 90 bp GTGTTCAACCCCTTGTTCTGGAGTTGGGGAGATGTGCACACTGAGGACAAGTGTTCTTCTTGCTCATCCTaGTCCTTAGACATCAGCTGC +
Preference number: 4 (lower is better)
Translates to: VFNPLFWSWGDVHTEDKCSSCSS*SLDISC
Trigger: GCAGCTGATGTCTAAGGATCAGGATGAGCAAGAAGA...ACACTTGTCCTCAGTGTGCACATCTCCCCAACTCCAGAACAAGGGGTTGAACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR GCA 90 bp TCCTCTGGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGCTAAGCGGCGGAATTTaGCGAGGTATTCTTGCAGTT +
Preference number: 4 (lower is better)
Translates to: SSGISSAAQAVWLLKRSQLSGGI*RGILAV
Trigger: AACTGCAAGAATACCTCGGCAAATTCCGCCGCTTAG...CTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCCAGAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp GTCCTCAATGCCCTTTCCCTCATGTCCAGACCTTCCAAGCAGCTTGCCTTCTTTAGGCCAATTTCTCTCTaGGTACTTCGGGCTTCATGT +
Preference number: 4 (lower is better)
Translates to: VLNALSLMSRPSKQLAFFRPISL*VLRASC
Trigger: ACATGAAGCCCGAAGTACCCAGAGAGAAATTGGCCT...AAAGAAGGCAAGCTGCTTGGAAGGTCTGGACATGAGGGAAAGGGCATTGAGGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR TCA 90 bp GGCTCAAAGTTTTCTTCTGCCTCTGCCGTAACCATGGCTGGAGGAGAGGGTGGGAAATCTCATTGCTGCTaGCATTGTCAAAGTAGTAAG +
Preference number: 4 (lower is better)
Translates to: GSKFSSASAVTMAGGEGGKSHCC*HCQSSK
Trigger: CTTACTACTTTGACAATGTCAGCAGCAATGAGATTT...CCCACCCTCTCCTCCAGCCATGGTTACGGCAGAGGCAGAAGAAAACTTTGAGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR TCA 90 bp GGCTCAAAGTTTTCTTCTGCCTCTGCCGTAACCATGGCTGGAGGAGAGGGTGGGAGAAAAATCAGTTTGTaGATAATCCACTATTGGGGG +
Preference number: 4 (lower is better)
Translates to: GSKFSSASAVTMAGGEGGRKISL*IIHYWG
Trigger: CCCCCAATAGTGGATTATTCACAAACTGATTTTTCT...CCCACCCTCTCCTCCAGCCATGGTTACGGCAGAGGCAGAAGAAAACTTTGAGCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR TCA 90 bp AAGCTGTGGACATCAGTGGGTGTTCAACCCCTTGTTCTGGAGTTGGGGAGATGTCAAACTCTGGGCAGTTaGGAAGCTGAGAAAAATCAG +
Preference number: 4 (lower is better)
Translates to: KLWTSVGVQPLVLELGRCQTLGS*EAEKNQ
Trigger: CTGATTTTTCTCAGCTTCTCAACTGCCCAGAGTTTG...ACATCTCCCCAACTCCAGAACAAGGGGTTGAACACCCACTGATGTCCACAGCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR TCA 90 bp ATGATGGAAGTCATGGTGACAGGAGGGATGGGGTACTTGGAGGCTCCTGCCCAGCATACATCTTTTTATTaGAGTGATCTCGGAGGAAGA +
Preference number: 4 (lower is better)
Translates to: MMEVMVTGGMGYLEAPAQHTSFY*SDLGGR
Trigger: TCTTCCTCCGAGATCACTTCAATAAAAAGATGTATG...CTGGGCAGGAGCCTCCAAGTACCCCATCCCTCCTGTCACCATGACTTCCATCAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR GCA 90 bp GTCCTCAATGCCCTTTCCCTCATGTCCAGACCTTCCAAGCAGCTTGCCTTCTTTTGTAGGCCAGTTGACTaGATCTCCAAAATCACCAAC +
Preference number: 4 (lower is better)
Translates to: VLNALSLMSRPSKQLAFFCRPVD*ISKITN
Trigger: GTTGGTGATTTTGGAGATGCAGTCAACTGGCCTACA...AAAGAAGGCAAGCTGCTTGGAAGGTCTGGACATGAGGGAAAGGGCATTGAGGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp ACCCTTAGAGAATGGTACCTTTTCTCCACCTCCTTGAGGTCAAAGGTCGTTAAGTGTTTTTGTTGGCACTaGGGTGACTGCACGGGGAGA +
Preference number: 4 (lower is better)
Translates to: TLREWYLFSTSLRSKVVKCFCWH*GDCTGR
Trigger: TCTCCCCGTGCAGTCACCCCAGTGCCAACAAAAACA...CTTAACGACCTTTGACCTCAAGGAGGTGGAGAAAAGGTACCATTCTCTAAGGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp GTGTTCAACCCCTTGTTCTGGAGTTGGGGAGATGTGCACACTGAGGACAAGTGTCACAGGGTAAAACCGTaGTGTCTGACTAGAGTCTTT +
Preference number: 4 (lower is better)
Translates to: VFNPLFWSWGDVHTEDKCHRVKP*CLTRVF
Trigger: AAAGACTCTAGTCAGACACCACGGTTTTACCCTGTG...ACACTTGTCCTCAGTGTGCACATCTCCCCAACTCCAGAACAAGGGGTTGAACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp ACCCTTAGAGAATGGTACCTTTTCTCCACCTCCTTGAGGTCAAAGGTCGTTAAGGCTGGCTTGTCCATTTaGCATCTTCTCGAGTGGCCT +
Preference number: 4 (lower is better)
Translates to: TLREWYLFSTSLRSKVVKAGLSI*HLLEWP
Trigger: AGGCCACTCGAGAAGATGCCAAATGGACAAGCCAGC...CTTAACGACCTTTGACCTCAAGGAGGTGGAGAAAAGGTACCATTCTCTAAGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR TCA 90 bp CCTAAGCTGTGGACATCAGTGGGTGTTCAACCCCTTGTTCTGGAGTTGGGGAGACTAAATTGTCCACGCTaGAGTAATATTCAATCTGGC +
Preference number: 4 (lower is better)
Translates to: PKLWTSVGVQPLVLELGRLNCPR*SNIQSG
Trigger: GCCAGATTGAATATTACTTCAGCGTGGACAATTTAG...TCTCCCCAACTCCAGAACAAGGGGTTGAACACCCACTGATGTCCACAGCTTAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR TCA 90 bp TCCTCTGGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGTTAGAGCCGCAAAGATaGGTGAAATGTCAGTGGTTA +
Preference number: 4 (lower is better)
Translates to: SSGISSAAQAVWLLKRSQLEPQR*VKCQWL
Trigger: TAACCACTGACATTTCACTCATCTTTGCGGCTCTAA...CTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCCAGAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR TCA 90 bp GGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGGTATACCCAGTGCGAGCTGCTTaGACTCTTCATACATCTTTT +
Preference number: 4 (lower is better)
Translates to: GISSAAQAVWLLKRSQVYPVRAA*TLHTSF
Trigger: AAAAGATGTATGAAGAGTTCAAGCAGCTCGCACTGG...GTATACCTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR GCA 90 bp ACCCTTAGAGAATGGTACCTTTTCTCCACCTCCTTGAGGTCAAAGGTCGTTAAGTTGTGGGACTGTGGCTaGACACTTTTGTGGGCTATC +
Preference number: 4 (lower is better)
Translates to: TLREWYLFSTSLRSKVVKLWDCG*TLLWAI
Trigger: GATAGCCCACAAAAGTGTGCAGCCACAGTCCCACAA...CTTAACGACCTTTGACCTCAAGGAGGTGGAGAAAAGGTACCATTCTCTAAGGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp ACCCTTAGAGAATGGTACCTTTTCTCCACCTCCTTGAGGTCAAAGGTCGTTAAGGGCTGCACACTTTTGTaGGCTATCTCTCCAGGTGTA +
Preference number: 4 (lower is better)
Translates to: TLREWYLFSTSLRSKVVKGCTLL*AISPGV
Trigger: TACACCTGGAGAGATAGCCCACAAAAGTGTGCAGCC...CTTAACGACCTTTGACCTCAAGGAGGTGGAGAAAAGGTACCATTCTCTAAGGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp GGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGGTATACCACAGGGTAAAACCGTaGTGTCTGACTAGAGTCTTT +
Preference number: 4 (lower is better)
Translates to: GISSAAQAVWLLKRSQVYHRVKP*CLTRVF
Trigger: AAAGACTCTAGTCAGACACCACGGTTTTACCCTGTG...GTATACCTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp GTCCTCAATGCCCTTTCCCTCATGTCCAGACCTTCCAAGCAGCTTGCCTTCTTTTTCACTGTCTCCTCCTaGAAATCCTTGAATATGTCC +
Preference number: 4 (lower is better)
Translates to: VLNALSLMSRPSKQLAFFFTVSS*KSLNMS
Trigger: GGACATATTCAAGGATTTCCAGGAGGAGACAGTGAA...AAAGAAGGCAAGCTGCTTGGAAGGTCTGGACATGAGGGAAAGGGCATTGAGGAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR TCA 90 bp TCCTCTGGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGCTAAATTGTCCACGCTaGAGTAATATTCAATCTGGC +
Preference number: 4 (lower is better)
Translates to: SSGISSAAQAVWLLKRSQLNCPR*SNIQSG
Trigger: GCCAGATTGAATATTACTTCAGCGTGGACAATTTAG...CTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCCAGAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR TCA 90 bp AAGCTGTGGACATCAGTGGGTGTTCAACCCCTTGTTCTGGAGTTGGGGAGATGTCATACATCTTTTTATTaGAGTGATCTCGGAGGAAGA +
Preference number: 4 (lower is better)
Translates to: KLWTSVGVQPLVLELGRCHTSFY*SDLGGR
Trigger: TCTTCCTCCGAGATCACTTCAATAAAAAGATGTATG...ACATCTCCCCAACTCCAGAACAAGGGGTTGAACACCCACTGATGTCCACAGCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR TCA 90 bp GGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGGTATACAAATCTCATTGCTGCTaGCATTGTCAAAGTAGTAAG +
Preference number: 4 (lower is better)
Translates to: GISSAAQAVWLLKRSQVYKSHCC*HCQSSK
Trigger: CTTACTACTTTGACAATGTCAGCAGCAATGAGATTT...GTATACCTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR TCA 90 bp ACCCTTAGAGAATGGTACCTTTTCTCCACCTCCTTGAGGTCAAAGGTCGTTAAGTTAGAGCCGCAAAGATaGGTGAAATGTCAGTGGTTA +
Preference number: 4 (lower is better)
Translates to: TLREWYLFSTSLRSKVVKLEPQR*VKCQWL
Trigger: TAACCACTGACATTTCACTCATCTTTGCGGCTCTAA...CTTAACGACCTTTGACCTCAAGGAGGTGGAGAAAAGGTACCATTCTCTAAGGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR TCA 90 bp GGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGGTATACAGAAAAATCAGTTTGTaGATAATCCACTATTGGGGG +
Preference number: 4 (lower is better)
Translates to: GISSAAQAVWLLKRSQVYRKISL*IIHYWG
Trigger: CCCCCAATAGTGGATTATTCACAAACTGATTTTTCT...GTATACCTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR TCA 90 bp ACCCTTAGAGAATGGTACCTTTTCTCCACCTCCTTGAGGTCAAAGGTCGTTAAGTTTCCACTTCTTGCTTaGTCTGTGAATACTCAGGCT +
Preference number: 4 (lower is better)
Translates to: TLREWYLFSTSLRSKVVKFPLLA*SVNTQA
Trigger: AGCCTGAGTATTCACAGATCAAGCAAGAAGTGGAAA...CTTAACGACCTTTGACCTCAAGGAGGTGGAGAAAAGGTACCATTCTCTAAGGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR GCA 90 bp ACCCTTAGAGAATGGTACCTTTTCTCCACCTCCTTGAGGTCAAAGGTCGTTAAGGGCTTCATGTCTATTTaGAATGGAACCCACTTGTGT +
Preference number: 4 (lower is better)
Translates to: TLREWYLFSTSLRSKVVKGFMSI*NGTHLC
Trigger: ACACAAGTGGGTTCCATTGCAAATAGACATGAAGCC...CTTAACGACCTTTGACCTCAAGGAGGTGGAGAAAAGGTACCATTCTCTAAGGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CCA 90 bp ACCCTTAGAGAATGGTACCTTTTCTCCACCTCCTTGAGGTCAAAGGTCGTTAAGTTCACTGTCTCCTCCTaGAAATCCTTGAATATGTCC +
Preference number: 4 (lower is better)
Translates to: TLREWYLFSTSLRSKVVKFTVSS*KSLNMS
Trigger: GGACATATTCAAGGATTTCCAGGAGGAGACAGTGAA...CTTAACGACCTTTGACCTCAAGGAGGTGGAGAAAAGGTACCATTCTCTAAGGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS GCA 90 bp GACTCGGCCTGGGCGTCGGGCGCCGGCTTCTTCCTCGCCAGGCCGTaGTCCTCGGCCTGCAGCAGCGGGGCGCCCGCCGGCAGCAGCGGC +
Preference number: 5 (lower is better)
Translates to: DSAWASGAGFFLARP*SSACSSGAPAGSSG
Trigger: GCCGCTGCTGCCGGCGGGCGCCCCGCTGCTGCAGGCCGAGGAGCACGGCCTGGCGAGGAAGAAGCCGGCGCCCGACGCCCAGGCCGAGTC
80% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS CCA 90 bp CCGCCGTCGGGCTCTCCGCCGCCGTCACCCGGGCCCGACTCGGCCTaGGCGTCGGGCGCCGGCTTCTTCCTCGCCAGGCCGTGCTCCTCG +
Preference number: 5 (lower is better)
Translates to: PPSGSPPPSPGPDSA*ASGAGFFLARPCSS
Trigger: CGAGGAGCACGGCCTGGCGAGGAAGAAGCCGGCGCCCGACGCCCAGGCCGAGTCGGGCCCGGGTGACGGCGGCGGAGAGCCCGACGGCGG
80% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS CCA 90 bp CTCCACGAAGTCACGCCGGCCGCCGTCCTCGCCGTCGCTCCCCGCTaGGGCTTCCGCAGCTGCGGGTGGCCGCGGGCTCTCGCGCTCCGC +
Preference number: 5 (lower is better)
Translates to: LHEVTPAAVLAVAPR*GFRSCGWPRALALR
Trigger: GCGGAGCGCGAGAGCCCGCGGCCACCCGCAGCTGCGGAAGCCCCAGCGGGGAGCGACGGCGAGGACGGCGGCCGGCGTGACTTCGTGGAG
79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS GCA 90 bp CGGCGGCGGCGCGTGCTTCGTCCACGGGTTCACCTTGGGCGGCGGTaGCTCCACGAAGTCACGCCGGCCGCCGTCCTCGCCGTCGCTCCC +
Preference number: 5 (lower is better)
Translates to: RRRRVLRPRVHLGRR*LHEVTPAAVLAVAP
Trigger: GGGAGCGACGGCGAGGACGGCGGCCGGCGTGACTTCGTGGAGGCACCGCCGCCCAAGGTGAACCCGTGGACGAAGCACGCGCCGCCGCCG
77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS CCA 90 bp TCACCGCGGCCGGCGGCGGCGCGTGCTTCGTCCACGGGTTCACCTTaGGCGGCGGTGCCTCCACGAAGTCACGCCGGCCGCCGTCCTCGC +
Preference number: 5 (lower is better)
Translates to: SPRPAAARASSTGSP*AAVPPRSHAGRRPR
Trigger: GCGAGGACGGCGGCCGGCGTGACTTCGTGGAGGCACCGCCGCCCAAGGTGAACCCGTGGACGAAGCACGCGCCGCCGCCGGCCGCGGTGA
77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS GCA 90 bp GGTTCTGGAGGCGGCTGTCCGTTCACCGCGGCCGGCGGCGGCGCGTaGTTCGTCCACGGGTTCACCTTGGGCGGCGGTGCCTCCACGAAG +
Preference number: 5 (lower is better)
Translates to: GSGGGCPFTAAGGGA*FVHGFTLGGGASTK
Trigger: CTTCGTGGAGGCACCGCCGCCCAAGGTGAACCCGTGGACGAAGCACGCGCCGCCGCCGGCCGCGGTGAACGGACAGCCGCCTCCAGAACC
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS CCA 90 bp TTTAGGAGCAGCTGCCCTCACCACCTTGGCTGGAGCAGAAGGTTCTaGAGGCGGCTGTCCGTTCACCGCGGCCGGCGGCGGCGCGTGCTT +
Preference number: 5 (lower is better)
Translates to: FRSSCPHHLGWSRRF*RRLSVHRGRRRRVL
Trigger: AAGCACGCGCCGCCGCCGGCCGCGGTGAACGGACAGCCGCCTCCAGAACCTTCTGCTCCAGCCAAGGTGGTGAGGGCAGCTGCTCCTAAA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS CCA 90 bp GCTGCCCTTACGCGGTTTAGGAGCAGCTGCCCTCACCACCTTGGCTaGAGCAGAAGGTTCTGGAGGCGGCTGTCCGTTCACCGCGGCCGG +
Preference number: 5 (lower is better)
Translates to: AALTRFRSSCPHHLG*SRRFWRRLSVHRGR
Trigger: CCGGCCGCGGTGAACGGACAGCCGCCTCCAGAACCTTCTGCTCCAGCCAAGGTGGTGAGGGCAGCTGCTCCTAAACCGCGTAAGGGCAGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS CCA 90 bp GCTGGGAGGGAAGCTGCTGAGGCAGAGCAGTTGGGTGGGAGAACCTaGGCTCCTCTGGCTTCTTGGGGCGTGCTGGTGAGGGTCGAGGCC +
Preference number: 5 (lower is better)
Translates to: AGREAAEAEQLGGRT*APLASWGVLVRVEA
Trigger: GGCCTCGACCCTCACCAGCACGCCCCAAGAAGCCAGAGGAGCCCAGGTTCTCCCACCCAACTGCTCTGCCTCAGCAGCTTCCCTCCCAGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp GAGCAGGGCCAGGCAGCCTTCCCTCCGAGTAGCAAATCTGCTCTGAGGCTCACAGGGTGTCGCTTGTGGTaGCCTTCCTCGCCCATGGGG +
Preference number: 5 (lower is better)
Translates to: EQGQAAFPPSSKSALRLTGCRLW*PSSPMG
Trigger: CCCCATGGGCGAGGAAGGCAACCACAAGCGACACCC...TGTGAGCCTCAGAGCAGATTTGCTACTCGGAGGGAAGGCTGCCTGGCCCTGCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS GCA 90 bp CCACCAGCCCCATCACTCTTCACACTCGATGTCTCATCCTGGTCGTaGCAGGCAGGCTCCACTTTGGTCTCTGGTTGCCAGGCTGGGGTG +
Preference number: 5 (lower is better)
Translates to: PPAPSLFTLDVSSWS*QAGSTLVSGCQAGV
Trigger: CACCCCAGCCTGGCAACCAGAGACCAAAGTGGAGCCTGCCTGGCACGACCAGGATGAGACATCGAGTGTGAAGAGTGATGGGGCTGGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS CCA 90 bp CGAGCCCCACCAGCCCCATCACTCTTCACACTCGATGTCTCATCCTaGTCGTGCCAGGCAGGCTCCACTTTGGTCTCTGGTTGCCAGGCT +
Preference number: 5 (lower is better)
Translates to: RAPPAPSLFTLDVSS*SCQAGSTLVSGCQA
Trigger: AGCCTGGCAACCAGAGACCAAAGTGGAGCCTGCCTGGCACGACCAGGATGAGACATCGAGTGTGAAGAGTGATGGGGCTGGTGGGGCTCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp CCTAAGCTGTGGACATCAGTGGGTGTTCAACCCCTTGTTCTGGAGTTGGGGAGAGTCCACGGGTTCACCTaGGGCGGCGGTGCCTCCACG +
Preference number: 5 (lower is better)
Translates to: PKLWTSVGVQPLVLELGRVHGFT*GGGAST
Trigger: CGTGGAGGCACCGCCGCCCAAGGTGAACCCGTGGAC...TCTCCCCAACTCCAGAACAAGGGGTTGAACACCCACTGATGTCCACAGCTTAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS CCA 90 bp CCAGGCAGGCTCCACTTTGGTCTCTGGTTGCCAGGCTGGGGTGGGTaGGGCCACAGATACAGGCATGTAGGTGGCAGGTTCAGATCCTTT +
Preference number: 5 (lower is better)
Translates to: PGRLHFGLWLPGWGG*GHRYRHVGGRFRSF
Trigger: AAAGGATCTGAACCTGCCACCTACATGCCTGTATCTGTGGCCCCACCCACCCCAGCCTGGCAACCAGAGACCAAAGTGGAGCCTGCCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS CCA 90 bp GAGGCAGAGCAGTTGGGTGGGAGAACCTGGGCTCCTCTGGCTTCTTaGGGCGTGCTGGTGAGGGTCGAGGCCTTTTCTTCACTTCAATCC +
Preference number: 5 (lower is better)
Translates to: EAEQLGGRTWAPLAS*GVLVRVEAFSSLQS
Trigger: GGATTGAAGTGAAGAAAAGGCCTCGACCCTCACCAGCACGCCCCAAGAAGCCAGAGGAGCCCAGGTTCTCCCACCCAACTGCTCTGCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp GTGTTCAACCCCTTGTTCTGGAGTTGGGGAGATGTGCACACTGAGGACAAGTGTGTCCACGGGTTCACCTaGGGCGGCGGTGCCTCCACG +
Preference number: 5 (lower is better)
Translates to: VFNPLFWSWGDVHTEDKCVHGFT*GGGAST
Trigger: CGTGGAGGCACCGCCGCCCAAGGTGAACCCGTGGAC...ACACTTGTCCTCAGTGTGCACATCTCCCCAACTCCAGAACAAGGGGTTGAACAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp ATGATGGAAGTCATGGTGACAGGAGGGATGGGGTACTTGGAGGCTCCTGCCCAGCACTTTGGTCTCTGGTaGCCAGGCTGGGGTGGGTGG +
Preference number: 5 (lower is better)
Translates to: MMEVMVTGGMGYLEAPAQHFGLW*PGWGGW
Trigger: CCACCCACCCCAGCCTGGCAACCAGAGACCAAAGTG...CTGGGCAGGAGCCTCCAAGTACCCCATCCCTCCTGTCACCATGACTTCCATCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS GCA 90 bp TCCAAAATCACCAACCTTGCTGCCCTTACGCGGTTTAGGAGCAGCTaGCCTCACCACCTTGGCTGGAGCAGAAGGTTCTGGAGGCGGCTG +
Preference number: 5 (lower is better)
Translates to: SKITNLAALTRFRSS*PHHLGWSRRFWRRL
Trigger: CAGCCGCCTCCAGAACCTTCTGCTCCAGCCAAGGTGGTGAGGGCAGCTGCTCCTAAACCGCGTAAGGGCAGCAAGGTTGGTGATTTTGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS CCA 90 bp TCTCCCCACGGACAGCGGGTGTATGTCTTGGTTCCTGTGGGCGAGTaGGACGGGAGGCCAATTTCTCTCTGGGTACTTCGGGCTTCATGT +
Preference number: 5 (lower is better)
Translates to: SPHGQRVYVLVPVGE*DGRPISLWVLRASC
Trigger: ACATGAAGCCCGAAGTACCCAGAGAGAAATTGGCCTCCCGTCCCACTCGCCCACAGGAACCAAGACATACACCCGCTGTCCGTGGGGAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS CCA 90 bp TCCTTTCATCTCCCCACGGACAGCGGGTGTATGTCTTGGTTCCTGTaGGCGAGTGGGACGGGAGGCCAATTTCTCTCTGGGTACTTCGGG +
Preference number: 5 (lower is better)
Translates to: SFHLPTDSGCMSWFL*ASGTGGQFLSGYFG
Trigger: CCCGAAGTACCCAGAGAGAAATTGGCCTCCCGTCCCACTCGCCCACAGGAACCAAGACATACACCCGCTGTCCGTGGGGAGATGAAAGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp ATGATGGAAGTCATGGTGACAGGAGGGATGGGGTACTTGGAGGCTCCTGCCCAGCAGCGGGTGTATGTCTaGGTTCCTGTGGGCGAGTGG +
Preference number: 5 (lower is better)
Translates to: MMEVMVTGGMGYLEAPAQQRVYV*VPVGEW
Trigger: CCACTCGCCCACAGGAACCAAGACATACACCCGCTG...CTGGGCAGGAGCCTCCAAGTACCCCATCCCTCCTGTCACCATGACTTCCATCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp GAGCAGGGCCAGGCAGCCTTCCCTCCGAGTAGCAAATCTGCTCTGAGGCTCACAGTGAATAATCCACTATaGGGGGTCCAGGCAGTGGCC +
Preference number: 5 (lower is better)
Translates to: EQGQAAFPPSSKSALRLTVNNPL*GVQAVA
Trigger: GGCCACTGCCTGGACCCCCAATAGTGGATTATTCAC...TGTGAGCCTCAGAGCAGATTTGCTACTCGGAGGGAAGGCTGCCTGGCCCTGCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS CCA 90 bp AGGTTCAGATCCTTTCATCTCCCCACGGACAGCGGGTGTATGTCTTaGTTCCTGTGGGCGAGTGGGACGGGAGGCCAATTTCTCTCTGGG +
Preference number: 5 (lower is better)
Translates to: RFRSFHLPTDSGCMS*FLWASGTGGQFLSG
Trigger: CCCAGAGAGAAATTGGCCTCCCGTCCCACTCGCCCACAGGAACCAAGACATACACCCGCTGTCCGTGGGGAGATGAAAGGATCTGAACCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS CCA 90 bp GGGAAGGGTCTTCAGGTTGCTGACCTCCTCTGTTTTTGTTGGCACTaGGGTGACTGCACGGGGAGAGCCAGGTGCCGACTCTGTCTCTTT +
Preference number: 5 (lower is better)
Translates to: GKGLQVADLLCFCWH*GDCTGRARCRLCLF
Trigger: AAAGAGACAGAGTCGGCACCTGGCTCTCCCCGTGCAGTCACCCCAGTGCCAACAAAAACAGAGGAGGTCAGCAACCTGAAGACCCTTCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp TCCTCTGGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGGGGTGTCGCTTGTGGTaGCCTTCCTCGCCCATGGGG +
Preference number: 5 (lower is better)
Translates to: SSGISSAAQAVWLLKRSQGCRLW*PSSPMG
Trigger: CCCCATGGGCGAGGAAGGCAACCACAAGCGACACCC...CTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCCAGAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS TCA 90 bp TCTCGGAGGAAGAAGGACCAAAAGCGGAAGAGGGTGTTCATCTCCTaGGACTGGCCAATGCCCAAGCGCTTCCGCTCATTAAGGCAGCGC +
Preference number: 5 (lower is better)
Translates to: SRRKKDQKRKRVFIS*DWPMPKRFRSLRQR
Trigger: GCGCTGCCTTAATGAGCGGAAGCGCTTGGGCATTGGCCAGTCTCAGGAGATGAACACCCTCTTCCGCTTTTGGTCCTTCTTCCTCCGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS CCA 90 bp TCAGTAGGAACTTGTTGGAACCGAGGTGGCCCAGGAGGAACCTCCTaGTTAGGATCCACAGGGGGCTCAGGGGTCAGAGTGTCAAACTGT +
Preference number: 5 (lower is better)
Translates to: SVGTCWNRGGPGGTS*LGSTGGSGVRVSNC
Trigger: ACAGTTTGACACTCTGACCCCTGAGCCCCCTGTGGATCCTAACCAGGAGGTTCCTCCTGGGCCACCTCGGTTCCAACAAGTTCCTACTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp CCTAAGCTGTGGACATCAGTGGGTGTTCAACCCCTTGTTCTGGAGTTGGGGAGAGCTGCCCTCACCACCTaGGCTGGAGCAGAAGGTTCT +
Preference number: 5 (lower is better)
Translates to: PKLWTSVGVQPLVLELGRAALTT*AGAEGS
Trigger: AGAACCTTCTGCTCCAGCCAAGGTGGTGAGGGCAGC...TCTCCCCAACTCCAGAACAAGGGGTTGAACACCCACTGATGTCCACAGCTTAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp GGCTCAAAGTTTTCTTCTGCCTCTGCCGTAACCATGGCTGGAGGAGAGGGTGGGGCACCAAACAGCTTGTaGGCCAGGGCATCAGTAGGA +
Preference number: 5 (lower is better)
Translates to: GSKFSSASAVTMAGGEGGAPNSL*ARASVG
Trigger: TCCTACTGATGCCCTGGCCAACAAGCTGTTTGGTGC...CCCACCCTCTCCTCCAGCCATGGTTACGGCAGAGGCAGAAGAAAACTTTGAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp GGCTCAAAGTTTTCTTCTGCCTCTGCCGTAACCATGGCTGGAGGAGAGGGTGGGGGAGCACCAAACAGCTaGTTGGCCAGGGCATCAGTA +
Preference number: 5 (lower is better)
Translates to: GSKFSSASAVTMAGGEGGGAPNS*LARASV
Trigger: TACTGATGCCCTGGCCAACAAGCTGTTTGGTGCTCC...CCCACCCTCTCCTCCAGCCATGGTTACGGCAGAGGCAGAAGAAAACTTTGAGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp GAGCAGGGCCAGGCAGCCTTCCCTCCGAGTAGCAAATCTGCTCTGAGGCTCACATCTAAGCGGCGGAATTaGCCGAGGTATTCTTGCAGT +
Preference number: 5 (lower is better)
Translates to: EQGQAAFPPSSKSALRLTSKRRN*PRYSCS
Trigger: ACTGCAAGAATACCTCGGCAAATTCCGCCGCTTAGA...TGTGAGCCTCAGAGCAGATTTGCTACTCGGAGGGAAGGCTGCCTGGCCCTGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp AAGCTGTGGACATCAGTGGGTGTTCAACCCCTTGTTCTGGAGTTGGGGAGATGTACCACTGGGTGTCGCTaGTGGTTGCCTTCCTCGCCC +
Preference number: 5 (lower is better)
Translates to: KLWTSVGVQPLVLELGRCTTGCR*WLPSSP
Trigger: GGGCGAGGAAGGCAACCACAAGCGACACCCAGTGGT...ACATCTCCCCAACTCCAGAACAAGGGGTTGAACACCCACTGATGTCCACAGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp GTGTTCAACCCCTTGTTCTGGAGTTGGGGAGATGTGCACACTGAGGACAAGTGTACCACTGGGTGTCGCTaGTGGTTGCCTTCCTCGCCC +
Preference number: 5 (lower is better)
Translates to: VFNPLFWSWGDVHTEDKCTTGCR*WLPSSP
Trigger: GGGCGAGGAAGGCAACCACAAGCGACACCCAGTGGT...ACACTTGTCCTCAGTGTGCACATCTCCCCAACTCCAGAACAAGGGGTTGAACAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp GGCTCAAAGTTTTCTTCTGCCTCTGCCGTAACCATGGCTGGAGGAGAGGGTGGGTGCTGGCTTGTCCATTaGGCATCTTCTCGAGTGGCC +
Preference number: 5 (lower is better)
Translates to: GSKFSSASAVTMAGGEGGCWLVH*ASSRVA
Trigger: GGCCACTCGAGAAGATGCCAAATGGACAAGCCAGCA...CCCACCCTCTCCTCCAGCCATGGTTACGGCAGAGGCAGAAGAAAACTTTGAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp AAGCTGTGGACATCAGTGGGTGTTCAACCCCTTGTTCTGGAGTTGGGGAGATGTGCTGCCCTCACCACCTaGGCTGGAGCAGAAGGTTCT +
Preference number: 5 (lower is better)
Translates to: KLWTSVGVQPLVLELGRCAALTT*AGAEGS
Trigger: AGAACCTTCTGCTCCAGCCAAGGTGGTGAGGGCAGC...ACATCTCCCCAACTCCAGAACAAGGGGTTGAACACCCACTGATGTCCACAGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp GGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGGTATACCACTTTGGTCTCTGGTaGCCAGGCTGGGGTGGGTGG +
Preference number: 5 (lower is better)
Translates to: GISSAAQAVWLLKRSQVYHFGLW*PGWGGW
Trigger: CCACCCACCCCAGCCTGGCAACCAGAGACCAAAGTG...GTATACCTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp ATGATGGAAGTCATGGTGACAGGAGGGATGGGGTACTTGGAGGCTCCTGCCCAGACCATCTCTACCACCTaGCTGTCCTTTAGAGCCGCA +
Preference number: 5 (lower is better)
Translates to: MMEVMVTGGMGYLEAPAQTISTT*LSFRAA
Trigger: TGCGGCTCTAAAGGACAGCAAGGTGGTAGAGATGGT...CTGGGCAGGAGCCTCCAAGTACCCCATCCCTCCTGTCACCATGACTTCCATCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp CACACACACACACACTCCCACCCCTCCTCAGCCTGTGTTGAGATGATAGCCTTGTGCTGGCTTGTCCATTaGGCATCTTCTCGAGTGGCC +
Preference number: 5 (lower is better)
Translates to: HTHTHSHPSSACVEMIALCWLVH*ASSRVA
Trigger: GGCCACTCGAGAAGATGCCAAATGGACAAGCCAGCA...CAAGGCTATCATCTCAACACAGGCTGAGGAGGGGTGGGAGTGTGTGTGTGTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS CCA 90 bp TCGAGGCCTTTTCTTCACTTCAATCCAGCTCTCAGAATCCAGATCTaGGAGGCTGGCAGACAGGCCCTTGGGAAGGGTCTTCAGGTTGCT +
Preference number: 5 (lower is better)
Translates to: SRPFLHFNPALRIQI*EAGRQALGKGLQVA
Trigger: AGCAACCTGAAGACCCTTCCCAAGGGCCTGTCTGCCAGCCTCCCAGATCTGGATTCTGAGAGCTGGATTGAAGTGAAGAAAAGGCCTCGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp GGCTCAAAGTTTTCTTCTGCCTCTGCCGTAACCATGGCTGGAGGAGAGGGTGGGCCAGGTGTAGGCCAGTaGACTGCATCTCCAAAATCA +
Preference number: 5 (lower is better)
Translates to: GSKFSSASAVTMAGGEGGPGVGQ*TASPKS
Trigger: TGATTTTGGAGATGCAGTCAACTGGCCTACACCTGG...CCCACCCTCTCCTCCAGCCATGGTTACGGCAGAGGCAGAAGAAAACTTTGAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp CACACACACACACACTCCCACCCCTCCTCAGCCTGTGTTGAGATGATAGCCTTGTGTGGCTGCACACTTTaGTGGGCTATCTCTCCAGGT +
Preference number: 5 (lower is better)
Translates to: HTHTHSHPSSACVEMIALCGCTL*WAISPG
Trigger: ACCTGGAGAGATAGCCCACAAAAGTGTGCAGCCACA...CAAGGCTATCATCTCAACACAGGCTGAGGAGGGGTGGGAGTGTGTGTGTGTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp CCTAAGCTGTGGACATCAGTGGGTGTTCAACCCCTTGTTCTGGAGTTGGGGAGAATCAGTAGGAACTTGTaGGAACCGAGGTGGCCCAGG +
Preference number: 5 (lower is better)
Translates to: PKLWTSVGVQPLVLELGRISRNL*EPRWPR
Trigger: CCTGGGCCACCTCGGTTCCAACAAGTTCCTACTGAT...TCTCCCCAACTCCAGAACAAGGGGTTGAACACCCACTGATGTCCACAGCTTAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp CCTAAGCTGTGGACATCAGTGGGTGTTCAACCCCTTGTTCTGGAGTTGGGGAGAGCACCAAACAGCTTGTaGGCCAGGGCATCAGTAGGA +
Preference number: 5 (lower is better)
Translates to: PKLWTSVGVQPLVLELGRAPNSL*ARASVG
Trigger: TCCTACTGATGCCCTGGCCAACAAGCTGTTTGGTGC...TCTCCCCAACTCCAGAACAAGGGGTTGAACACCCACTGATGTCCACAGCTTAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp ATGATGGAAGTCATGGTGACAGGAGGGATGGGGTACTTGGAGGCTCCTGCCCAGGTGAAGCCATTTTCCTaGAGCAGCTCATGGGAAGGA +
Preference number: 5 (lower is better)
Translates to: MMEVMVTGGMGYLEAPAQVKPFS*SSSWEG
Trigger: TCCTTCCCATGAGCTGCTCAAGGAAAATGGCTTCAC...CTGGGCAGGAGCCTCCAAGTACCCCATCCCTCCTGTCACCATGACTTCCATCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS CCA 90 bp GTCTTGGTTCCTGTGGGCGAGTGGGACGGGAGGCCAATTTCTCTCTaGGTACTTCGGGCTTCATGTCTATTTGCAATGGAACCCACTTGT +
Preference number: 5 (lower is better)
Translates to: VLVPVGEWDGRPISL*VLRASCLFAMEPTC
Trigger: ACAAGTGGGTTCCATTGCAAATAGACATGAAGCCCGAAGTACCCAGAGAGAAATTGGCCTCCCGTCCCACTCGCCCACAGGAACCAAGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp CCTAAGCTGTGGACATCAGTGGGTGTTCAACCCCTTGTTCTGGAGTTGGGGAGAATGTTGTTCATATACTaGTGGGTGCGGGGCCCCTCT +
Preference number: 5 (lower is better)
Translates to: PKLWTSVGVQPLVLELGRMLFIY*WVRGPS
Trigger: AGAGGGGCCCCGCACCCACAAGTATATGAACAACAT...TCTCCCCAACTCCAGAACAAGGGGTTGAACACCCACTGATGTCCACAGCTTAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp AAGCTGTGGACATCAGTGGGTGTTCAACCCCTTGTTCTGGAGTTGGGGAGATGTGTGAATAATCCACTATaGGGGGTCCAGGCAGTGGCC +
Preference number: 5 (lower is better)
Translates to: KLWTSVGVQPLVLELGRCVNNPL*GVQAVA
Trigger: GGCCACTGCCTGGACCCCCAATAGTGGATTATTCAC...ACATCTCCCCAACTCCAGAACAAGGGGTTGAACACCCACTGATGTCCACAGCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp ATGATGGAAGTCATGGTGACAGGAGGGATGGGGTACTTGGAGGCTCCTGCCCAGCCATCATTAATGACCTaGGCCAGTTCAGCACTCATC +
Preference number: 5 (lower is better)
Translates to: MMEVMVTGGMGYLEAPAQPSLMT*ASSALI
Trigger: GATGAGTGCTGAACTGGCCAAGGTCATTAATGATGG...CTGGGCAGGAGCCTCCAAGTACCCCATCCCTCCTGTCACCATGACTTCCATCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp GTCCTCAATGCCCTTTCCCTCATGTCCAGACCTTCCAAGCAGCTTGCCTTCTTTATCAGTAGGAACTTGTaGGAACCGAGGTGGCCCAGG +
Preference number: 5 (lower is better)
Translates to: VLNALSLMSRPSKQLAFFISRNL*EPRWPR
Trigger: CCTGGGCCACCTCGGTTCCAACAAGTTCCTACTGAT...AAAGAAGGCAAGCTGCTTGGAAGGTCTGGACATGAGGGAAAGGGCATTGAGGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp GTCCTCAATGCCCTTTCCCTCATGTCCAGACCTTCCAAGCAGCTTGCCTTCTTTGGAGCACCAAACAGCTaGTTGGCCAGGGCATCAGTA +
Preference number: 5 (lower is better)
Translates to: VLNALSLMSRPSKQLAFFGAPNS*LARASV
Trigger: TACTGATGCCCTGGCCAACAAGCTGTTTGGTGCTCC...AAAGAAGGCAAGCTGCTTGGAAGGTCTGGACATGAGGGAAAGGGCATTGAGGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp TCCTCTGGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGACTCTGGGACAGTGGTaGGTAGAGAACGGGCAATGG +
Preference number: 5 (lower is better)
Translates to: SSGISSAAQAVWLLKRSQTLGQW*VENGQW
Trigger: CCATTGCCCGTTCTCTACCAACCACTGTCCCAGAGT...CTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCCAGAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS TCA 90 bp TCTTGCTCCTTCATGTCCTTCTTAGGTGGCAACTTACGAGCAGGCTaGGGCTTGTGGGACTGTGGCTGCACACTTTTGTGGGCTATCTCT +
Preference number: 5 (lower is better)
Translates to: SCSFMSFLGGNLRAG*GLWDCGCTLLWAIS
Trigger: AGAGATAGCCCACAAAAGTGTGCAGCCACAGTCCCACAAGCCTCAGCCTGCTCGTAAGTTGCCACCTAAGAAGGACATGAAGGAGCAAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS GCA 90 bp CTGCACACTTTTGTGGGCTATCTCTCCAGGTGTAGGCCAGTTGACTaGATCTCCAAAATCACCAACCTTGCTGCCCTTACGCGGTTTAGG +
Preference number: 5 (lower is better)
Translates to: LHTFVGYLSRCRPVD*ISKITNLAALTRFR
Trigger: CCTAAACCGCGTAAGGGCAGCAAGGTTGGTGATTTTGGAGATGCAGTCAACTGGCCTACACCTGGAGAGATAGCCCACAAAAGTGTGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp GTGTTCAACCCCTTGTTCTGGAGTTGGGGAGATGTGCACACTGAGGACAAGTGTTGTGGCTGCACACTTTaGTGGGCTATCTCTCCAGGT +
Preference number: 5 (lower is better)
Translates to: VFNPLFWSWGDVHTEDKCCGCTL*WAISPG
Trigger: ACCTGGAGAGATAGCCCACAAAAGTGTGCAGCCACA...ACACTTGTCCTCAGTGTGCACATCTCCCCAACTCCAGAACAAGGGGTTGAACAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp ACCCTTAGAGAATGGTACCTTTTCTCCACCTCCTTGAGGTCAAAGGTCGTTAAGCAGCGGGTGTATGTCTaGGTTCCTGTGGGCGAGTGG +
Preference number: 5 (lower is better)
Translates to: TLREWYLFSTSLRSKVVKQRVYV*VPVGEW
Trigger: CCACTCGCCCACAGGAACCAAGACATACACCCGCTG...CTTAACGACCTTTGACCTCAAGGAGGTGGAGAAAAGGTACCATTCTCTAAGGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp GTCCTCAATGCCCTTTCCCTCATGTCCAGACCTTCCAAGCAGCTTGCCTTCTTTATGTTGTTCATATACTaGTGGGTGCGGGGCCCCTCT +
Preference number: 5 (lower is better)
Translates to: VLNALSLMSRPSKQLAFFMLFIY*WVRGPS
Trigger: AGAGGGGCCCCGCACCCACAAGTATATGAACAACAT...AAAGAAGGCAAGCTGCTTGGAAGGTCTGGACATGAGGGAAAGGGCATTGAGGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp AAGCTGTGGACATCAGTGGGTGTTCAACCCCTTGTTCTGGAGTTGGGGAGATGTACCATCTCTACCACCTaGCTGTCCTTTAGAGCCGCA +
Preference number: 5 (lower is better)
Translates to: KLWTSVGVQPLVLELGRCTISTT*LSFRAA
Trigger: TGCGGCTCTAAAGGACAGCAAGGTGGTAGAGATGGT...ACATCTCCCCAACTCCAGAACAAGGGGTTGAACACCCACTGATGTCCACAGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp CCTAAGCTGTGGACATCAGTGGGTGTTCAACCCCTTGTTCTGGAGTTGGGGAGAGGTTCGAGCTGTGCCTaGTCTTTCTTTTTCGAGGCA +
Preference number: 5 (lower is better)
Translates to: PKLWTSVGVQPLVLELGRGSSCA*SFFFEA
Trigger: TGCCTCGAAAAAGAAAGACAAGGCACAGCTCGAACC...TCTCCCCAACTCCAGAACAAGGGGTTGAACACCCACTGATGTCCACAGCTTAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS TCA 90 bp GCCGCAAAGATGAGTGAAATGTCAGTGGTTAGGGCCTGTACACGGTaGAAGGAAGCAATAAGGGTGATGGGAAGGAAGCCATCAGCATCC +
Preference number: 5 (lower is better)
Translates to: AAKMSEMSVVRACTR*KEAIRVMGRKPSAS
Trigger: GGATGCTGATGGCTTCCTTCCCATCACCCTTATTGCTTCCTTTCACCGTGTACAGGCCCTAACCACTGACATTTCACTCATCTTTGCGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp CACACACACACACACTCCCACCCCTCCTCAGCCTGTGTTGAGATGATAGCCTTGTCCATCTCCTTTCTCTaGCTCCTTCATGTCCTTCTT +
Preference number: 5 (lower is better)
Translates to: HTHTHSHPSSACVEMIALSISFL*LLHVLL
Trigger: AAGAAGGACATGAAGGAGCAAGAGAAAGGAGATGGA...CAAGGCTATCATCTCAACACAGGCTGAGGAGGGGTGGGAGTGTGTGTGTGTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp CCTAAGCTGTGGACATCAGTGGGTGTTCAACCCCTTGTTCTGGAGTTGGGGAGAGGGCTTCATGTCTATTaGCAATGGAACCCACTTGTG +
Preference number: 5 (lower is better)
Translates to: PKLWTSVGVQPLVLELGRGLHVY*QWNPLV
Trigger: CACAAGTGGGTTCCATTGCAAATAGACATGAAGCCC...TCTCCCCAACTCCAGAACAAGGGGTTGAACACCCACTGATGTCCACAGCTTAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp CACACACACACACACTCCCACCCCTCCTCAGCCTGTGTTGAGATGATAGCCTTGCATGTAAGGTGGTGTTaGAGTGACGATGAGGATCTT +
Preference number: 5 (lower is better)
Translates to: HTHTHSHPSSACVEMIALHVRWC*SDDEDL
Trigger: AAGATCCTCATCGTCACTCAAACACCACCTTACATG...CAAGGCTATCATCTCAACACAGGCTGAGGAGGGGTGGGAGTGTGTGTGTGTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp GGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGGTATACTGGCATTTCGGTAGTTaGGAGACTCTGGGACAGTGG +
Preference number: 5 (lower is better)
Translates to: GISSAAQAVWLLKRSQVYWHFGS*ETLGQW
Trigger: CCACTGTCCCAGAGTCTCCAAACTACCGAAATGCCA...GTATACCTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp TCCTCTGGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGGGTTCGAGCTGTGCCTaGTCTTTCTTTTTCGAGGCA +
Preference number: 5 (lower is better)
Translates to: SSGISSAAQAVWLLKRSQGSSCA*SFFFEA
Trigger: TGCCTCGAAAAAGAAAGACAAGGCACAGCTCGAACC...CTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCCAGAGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp TCCTCTGGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGTCCTCCTGGAAATCCTaGAATATGTCCAGCCGGAAC +
Preference number: 5 (lower is better)
Translates to: SSGISSAAQAVWLLKRSQSSWKS*NMSSRN
Trigger: GTTCCGGCTGGACATATTCAAGGATTTCCAGGAGGA...CTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCCAGAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp TCCTCTGGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGTCTAAGCGGCGGAATTaGCCGAGGTATTCTTGCAGT +
Preference number: 5 (lower is better)
Translates to: SSGISSAAQAVWLLKRSQSKRRN*PRYSCS
Trigger: ACTGCAAGAATACCTCGGCAAATTCCGCCGCTTAGA...CTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCCAGAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp GTCCTCAATGCCCTTTCCCTCATGTCCAGACCTTCCAAGCAGCTTGCCTTCTTTCTCAGTCCACAGGTCTaGTTCATAGTAGAAGAGTCC +
Preference number: 5 (lower is better)
Translates to: VLNALSLMSRPSKQLAFFLSPQV*FIVEES
Trigger: GGACTCTTCTACTATGAACAAGACCTGTGGACTGAG...AAAGAAGGCAAGCTGCTTGGAAGGTCTGGACATGAGGGAAAGGGCATTGAGGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp ACCCTTAGAGAATGGTACCTTTTCTCCACCTCCTTGAGGTCAAAGGTCGTTAAGACTCTGGGACAGTGGTaGGTAGAGAACGGGCAATGG +
Preference number: 5 (lower is better)
Translates to: TLREWYLFSTSLRSKVVKTLGQW*VENGQW
Trigger: CCATTGCCCGTTCTCTACCAACCACTGTCCCAGAGT...CTTAACGACCTTTGACCTCAAGGAGGTGGAGAAAAGGTACCATTCTCTAAGGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp GGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGGTATACGTGAAGCCATTTTCCTaGAGCAGCTCATGGGAAGGA +
Preference number: 5 (lower is better)
Translates to: GISSAAQAVWLLKRSQVYVKPFS*SSSWEG
Trigger: TCCTTCCCATGAGCTGCTCAAGGAAAATGGCTTCAC...GTATACCTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp TCCTCTGGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGTCCATCTCCTTTCTCTaGCTCCTTCATGTCCTTCTT +
Preference number: 5 (lower is better)
Translates to: SSGISSAAQAVWLLKRSQSISFL*LLHVLL
Trigger: AAGAAGGACATGAAGGAGCAAGAGAAAGGAGATGGA...CTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCCAGAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp GTCCTCAATGCCCTTTCCCTCATGTCCAGACCTTCCAAGCAGCTTGCCTTCTTTCATCCGACTTTGTTTTaGGGCTCTCCTTACTATCAC +
Preference number: 5 (lower is better)
Translates to: VLNALSLMSRPSKQLAFFHPTLF*GSPYYH
Trigger: GTGATAGTAAGGAGAGCCCAAAAACAAAGTCGGATG...AAAGAAGGCAAGCTGCTTGGAAGGTCTGGACATGAGGGAAAGGGCATTGAGGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp TCCTCTGGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGGGAACCCACTTGTGTTaGTTACCTTTCTTCTTCTGC +
Preference number: 5 (lower is better)
Translates to: SSGISSAAQAVWLLKRSQGTHLC*LPFFFC
Trigger: GCAGAAGAAGAAAGGTAACAAACACAAGTGGGTTCC...CTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCCAGAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071487.13
CDS-3UTR CAA 90 bp GGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGGTATACGGGCTTCATGTCTATTaGCAATGGAACCCACTTGTG +
Preference number: 5 (lower is better)
Translates to: GISSAAQAVWLLKRSQVYGLHVY*QWNPLV
Trigger: CACAAGTGGGTTCCATTGCAAATAGACATGAAGCCC...GTATACCTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp GTGTTCAACCCCTTGTTCTGGAGTTGGGGAGATGTGCACACTGAGGACAAGTGTCATGTAAGGTGGTGTTaGAGTGACGATGAGGATCTT +
Preference number: 5 (lower is better)
Translates to: VFNPLFWSWGDVHTEDKCHVRWC*SDDEDL
Trigger: AAGATCCTCATCGTCACTCAAACACCACCTTACATG...ACACTTGTCCTCAGTGTGCACATCTCCCCAACTCCAGAACAAGGGGTTGAACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp GGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGGTATACCTCAGTCCACAGGTCTaGTTCATAGTAGAAGAGTCC +
Preference number: 5 (lower is better)
Translates to: GISSAAQAVWLLKRSQVYLSPQV*FIVEES
Trigger: GGACTCTTCTACTATGAACAAGACCTGTGGACTGAG...GTATACCTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp ACCCTTAGAGAATGGTACCTTTTCTCCACCTCCTTGAGGTCAAAGGTCGTTAAGTGGCATTTCGGTAGTTaGGAGACTCTGGGACAGTGG +
Preference number: 5 (lower is better)
Translates to: TLREWYLFSTSLRSKVVKWHFGS*ETLGQW
Trigger: CCACTGTCCCAGAGTCTCCAAACTACCGAAATGCCA...CTTAACGACCTTTGACCTCAAGGAGGTGGAGAAAAGGTACCATTCTCTAAGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp TCCTCTGGCATCTCAAGTGCAGCTCAGGCAGTCTGGCTTTTGAAGAGAAGTCAGTCCAGTGCGAGCTGCTaGAACTCTTCATACATCTTT +
Preference number: 5 (lower is better)
Translates to: SSGISSAAQAVWLLKRSQSSASC*NSSYIF
Trigger: AAAGATGTATGAAGAGTTCAAGCAGCTCGCACTGGA...CTGACTTCTCTTCAAAAGCCAGACTGCCTGAGCTGCACTTGAGATGCCAGAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp GTCCTCAATGCCCTTTCCCTCATGTCCAGACCTTCCAAGCAGCTTGCCTTCTTTTCCAGTGCGAGCTGCTaGAACTCTTCATACATCTTT +
Preference number: 5 (lower is better)
Translates to: VLNALSLMSRPSKQLAFFSSASC*NSSYIF
Trigger: AAAGATGTATGAAGAGTTCAAGCAGCTCGCACTGGA...AAAGAAGGCAAGCTGCTTGGAAGGTCTGGACATGAGGGAAAGGGCATTGAGGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp ACCCTTAGAGAATGGTACCTTTTCTCCACCTCCTTGAGGTCAAAGGTCGTTAAGTCCTCCTGGAAATCCTaGAATATGTCCAGCCGGAAC +
Preference number: 5 (lower is better)
Translates to: TLREWYLFSTSLRSKVVKSSWKS*NMSSRN
Trigger: GTTCCGGCTGGACATATTCAAGGATTTCCAGGAGGA...CTTAACGACCTTTGACCTCAAGGAGGTGGAGAAAAGGTACCATTCTCTAAGGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS TCA 90 bp CTGTCTCTTTCTGGTAGTGCTGGCGGGGAACAAACTCTGGGCAGTTaGGAAGCTGAGAAAAATCAGTTTGTGAATAATCCACTATTGGGG +
Preference number: 5 (lower is better)
Translates to: LSLSGSAGGEQTLGS*EAEKNQFVNNPLLG
Trigger: CCCCAATAGTGGATTATTCACAAACTGATTTTTCTCAGCTTCTCAACTGCCCAGAGTTTGTTCCCCGCCAGCACTACCAGAAAGAGACAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp ACCCTTAGAGAATGGTACCTTTTCTCCACCTCCTTGAGGTCAAAGGTCGTTAAGCCATCATTAATGACCTaGGCCAGTTCAGCACTCATC +
Preference number: 5 (lower is better)
Translates to: TLREWYLFSTSLRSKVVKPSLMT*ASSALI
Trigger: GATGAGTGCTGAACTGGCCAAGGTCATTAATGATGG...CTTAACGACCTTTGACCTCAAGGAGGTGGAGAAAAGGTACCATTCTCTAAGGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp ACCCTTAGAGAATGGTACCTTTTCTCCACCTCCTTGAGGTCAAAGGTCGTTAAGTGCAATGGAACCCACTaGTGTTTGCTCCCTTTCTTC +
Preference number: 5 (lower is better)
Translates to: TLREWYLFSTSLRSKVVKCNGTH*CLLPFF
Trigger: GAAGAAAGGGAGCAAACACAAGTGGGTTCCATTGCA...CTTAACGACCTTTGACCTCAAGGAGGTGGAGAAAAGGTACCATTCTCTAAGGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178636.2
CDS-3UTR CAA 90 bp ACCCTTAGAGAATGGTACCTTTTCTCCACCTCCTTGAGGTCAAAGGTCGTTAAGTGCAATGGAACCCACTaGTGTTTGTTACCTTTCTTC +
Preference number: 5 (lower is better)
Translates to: TLREWYLFSTSLRSKVVKCNGTH*CLLPFF
Trigger: GAAGAAAGGTAACAAACACAAGTGGGTTCCATTGCA...CTTAACGACCTTTGACCTCAAGGAGGTGGAGAAAAGGTACCATTCTCTAAGGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071487.13
CDS TCA 90 bp AATCATATTCACTTTCTTGAAGTTTTCCACTTCTTGCTTGATCTGTaGATACTCAGGCTCAAACTTCTCAGTCCACAGGTCTTGTTCATA +
Preference number: 5 (lower is better)
Translates to: NHIHFLEVFHFLLDL*ILRLKLLSPQVLFI
Trigger: TATGAACAAGACCTGTGGACTGAGAAGTTTGAGCCTGAGTATTCACAGATCAAGCAAGAAGTGGAAAACTTCAAGAAAGTGAATATGATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS GCA 72 bp GGCGGCTGTCCGTTCACCGCGGCCGGCGGCGGCGCGTaGTTCGTCCACGGGTTCACCTTGGGCGGCGGTGCC +
Preference number: 6 (lower is better)
Translates to: GGCPFTAAGGGA*FVHGFTLGGGA
Trigger: GGCACCGCCGCCCAAGGTGAACCCGTGGACGAAGCACGCGCCGCCGCCGGCCGCGGTGAACGGACAGCCGCC
78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS CAA 90 bp TTCACCGCGGCCGGCGGCGGCGCGTGCTTCGTCCACGGGTTCACCTaGGGCGGCGGTGCCTCCACGAAGTCACGCCGGCCGCCGTCCTCG +
Preference number: 6 (lower is better)
Translates to: FTAAGGGACFVHGFT*GGGASTKSRRPPSS
Trigger: CGAGGACGGCGGCCGGCGTGACTTCGTGGAGGCACCGCCGCCCAAGGTGAACCCGTGGACGAAGCACGCGCCGCCGCCGGCCGCGGTGAA
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS CCA 72 bp CCGGCGGCGGCGCGTGCTTCGTCCACGGGTTCACCTTaGGCGGCGGTGCCTCCACGAAGTCACGCCGGCCGC +
Preference number: 6 (lower is better)
Translates to: PAAARASSTGSP*AAVPPRSHAGR
Trigger: GCGGCCGGCGTGACTTCGTGGAGGCACCGCCGCCCAAGGTGAACCCGTGGACGAAGCACGCGCCGCCGCCGG
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS CAA 72 bp GCCGGCGGCGGCGCGTGCTTCGTCCACGGGTTCACCTaGGGCGGCGGTGCCTCCACGAAGTCACGCCGGCCG +
Preference number: 6 (lower is better)
Translates to: AGGGACFVHGFT*GGGASTKSRRP
Trigger: CGGCCGGCGTGACTTCGTGGAGGCACCGCCGCCCAAGGTGAACCCGTGGACGAAGCACGCGCCGCCGCCGGC
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS GCA 72 bp CGCGTGCTTCGTCCACGGGTTCACCTTGGGCGGCGGTaGCTCCACGAAGTCACGCCGGCCGCCGTCCTCGCC +
Preference number: 6 (lower is better)
Translates to: RVLRPRVHLGRR*LHEVTPAAVLA
Trigger: GGCGAGGACGGCGGCCGGCGTGACTTCGTGGAGGCACCGCCGCCCAAGGTGAACCCGTGGACGAAGCACGCG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS CCA 72 bp AGCTGCCCTCACCACCTTGGCTGGAGCAGAAGGTTCTaGAGGCGGCTGTCCGTTCACCGCGGCCGGCGGCGG +
Preference number: 6 (lower is better)
Translates to: SCPHHLGWSRRF*RRLSVHRGRRR
Trigger: CCGCCGCCGGCCGCGGTGAACGGACAGCCGCCTCCAGAACCTTCTGCTCCAGCCAAGGTGGTGAGGGCAGCT
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS GCA 72 bp TTCGGTAGCCAAACTGGTAGTCAAAGTGGGTTCGAGTaGCACCCCGTCCACGGCCCCGTCCACGACCACGCC +
Preference number: 6 (lower is better)
Translates to: FGSQTGSQSGFE*HPVHGPVHDHA
Trigger: GGCGTGGTCGTGGACGGGGCCGTGGACGGGGTGGCACTCGAACCCACTTTGACTACCAGTTTGGCTACCGAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS CCA 72 bp GAAGCTGCTGAGGCAGAGCAGTTGGGTGGGAGAACCTaGGCTCCTCTGGCTTCTTGGGGCGTGCTGGTGAGG +
Preference number: 6 (lower is better)
Translates to: EAAEAEQLGGRT*APLASWGVLVR
Trigger: CCTCACCAGCACGCCCCAAGAAGCCAGAGGAGCCCAGGTTCTCCCACCCAACTGCTCTGCCTCAGCAGCTTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS CCA 72 bp TCTCGAGTGGCCTGGCCAGTAGGTGTCGTAGGGGGTTaGCTGATCCCAGTGGCAGGCCTGCTGGAAGACTGG +
Preference number: 6 (lower is better)
Translates to: SRVAWPVGVVGG*LIPVAGLLEDW
Trigger: CCAGTCTTCCAGCAGGCCTGCCACTGGGATCAGCCAACCCCCTACGACACCTACTGGCCAGGCCACTCGAGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS CAA 72 bp CCCTTACGCGGTTTAGGAGCAGCTGCCCTCACCACCTaGGCTGGAGCAGAAGGTTCTGGAGGCGGCTGTCCG +
Preference number: 6 (lower is better)
Translates to: PLRGLGAAALTT*AGAEGSGGGCP
Trigger: CGGACAGCCGCCTCCAGAACCTTCTGCTCCAGCCAAGGTGGTGAGGGCAGCTGCTCCTAAACCGCGTAAGGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS CAA 90 bp ACCTTGCTGCCCTTACGCGGTTTAGGAGCAGCTGCCCTCACCACCTaGGCTGGAGCAGAAGGTTCTGGAGGCGGCTGTCCGTTCACCGCG +
Preference number: 6 (lower is better)
Translates to: TLLPLRGLGAAALTT*AGAEGSGGGCPFTA
Trigger: CGCGGTGAACGGACAGCCGCCTCCAGAACCTTCTGCTCCAGCCAAGGTGGTGAGGGCAGCTGCTCCTAAACCGCGTAAGGGCAGCAAGGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS CAA 72 bp GCAGTTGGGTGGGAGAACCTGGGCTCCTCTGGCTTCTaGGGGCGTGCTGGTGAGGGTCGAGGCCTTTTCTTC +
Preference number: 6 (lower is better)
Translates to: AVGWENLGSSGF*GRAGEGRGLFF
Trigger: GAAGAAAAGGCCTCGACCCTCACCAGCACGCCCCAAGAAGCCAGAGGAGCCCAGGTTCTCCCACCCAACTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS CAA 72 bp TTCTCGAGTGGCCTGGCCAGTAGGTGTCGTAGGGGGTaGGCTGATCCCAGTGGCAGGCCTGCTGGAAGACTG +
Preference number: 6 (lower is better)
Translates to: FSSGLASRCRRG*ADPSGRPAGRL
Trigger: CAGTCTTCCAGCAGGCCTGCCACTGGGATCAGCCAACCCCCTACGACACCTACTGGCCAGGCCACTCGAGAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS CCA 72 bp CAGTTGGGTGGGAGAACCTGGGCTCCTCTGGCTTCTTaGGGCGTGCTGGTGAGGGTCGAGGCCTTTTCTTCA +
Preference number: 6 (lower is better)
Translates to: QLGGRTWAPLAS*GVLVRVEAFSS
Trigger: TGAAGAAAAGGCCTCGACCCTCACCAGCACGCCCCAAGAAGCCAGAGGAGCCCAGGTTCTCCCACCCAACTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS CCA 72 bp ACTTGTTGGAACCGAGGTGGCCCAGGAGGAACCTCCTaGTTAGGATCCACAGGGGGCTCAGGGGTCAGAGTG +
Preference number: 6 (lower is better)
Translates to: TCWNRGGPGGTS*LGSTGGSGVRV
Trigger: CACTCTGACCCCTGAGCCCCCTGTGGATCCTAACCAGGAGGTTCCTCCTGGGCCACCTCGGTTCCAACAAGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS GCA 72 bp ACCAACCTTGCTGCCCTTACGCGGTTTAGGAGCAGCTaGCCTCACCACCTTGGCTGGAGCAGAAGGTTCTGG +
Preference number: 6 (lower is better)
Translates to: TNLAALTRFRSS*PHHLGWSRRFW
Trigger: CCAGAACCTTCTGCTCCAGCCAAGGTGGTGAGGGCAGCTGCTCCTAAACCGCGTAAGGGCAGCAAGGTTGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS GCA 72 bp CCAGTTCAGCACTCATCTTGGCACGCGAAGTGTGGTTaGCTGTACGGTCTCCTCCAGGGTGGCGACGCATGT +
Preference number: 6 (lower is better)
Translates to: PVQHSSWHAKCG*LYGLLQGGDAC
Trigger: ACATGCGTCGCCACCCTGGAGGAGACCGTACAGGCAACCACACTTCGCGTGCCAAGATGAGTGCTGAACTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS GCA 72 bp GGAACTTGGGCAGTGACTGAGGGGTACAGCCATAGCTaGCGACTGCAGGTGTTCCCTCTGAAGGACTGGAGC +
Preference number: 6 (lower is better)
Translates to: GTWAVTEGYSHS*RLQVFPLKDWS
Trigger: GCTCCAGTCCTTCAGAGGGAACACCTGCAGTCGGCAGCTATGGCTGTACCCCTCAGTCACTGCCCAAGTTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS CCA 72 bp GGACAGCGGGTGTATGTCTTGGTTCCTGTGGGCGAGTaGGACGGGAGGCCAATTTCTCTCTGGGTACTTCGG +
Preference number: 6 (lower is better)
Translates to: GQRVYVLVPVGE*DGRPISLWVLR
Trigger: CCGAAGTACCCAGAGAGAAATTGGCCTCCCGTCCCACTCGCCCACAGGAACCAAGACATACACCCGCTGTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS CCA 72 bp GGCCAGGGCATCAGTAGGAACTTGTTGGAACCGAGGTaGCCCAGGAGGAACCTCCTGGTTAGGATCCACAGG +
Preference number: 6 (lower is better)
Translates to: GQGISRNLLEPR*PRRNLLVRIHR
Trigger: CCTGTGGATCCTAACCAGGAGGTTCCTCCTGGGCCACCTCGGTTCCAACAAGTTCCTACTGATGCCCTGGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS CAA 72 bp TCCGGGGTGTGCGGGGAGTCCTGGCATTTCGGTAGTTaGGAGACTCTGGGACAGTGGTTGGTAGAGAACGGG +
Preference number: 6 (lower is better)
Translates to: SGVCGESWHFGS*ETLGQWLVENG
Trigger: CCCGTTCTCTACCAACCACTGTCCCAGAGTCTCCAAACTACCGAAATGCCAGGACTCCCCGCACACCCCGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS CAA 90 bp CAGGTTCAGATCCTTTCATCTCCCCACGGACAGCGGGTGTATGTCTaGGTTCCTGTGGGCGAGTGGGACGGGAGGCCAATTTCTCTCTGG +
Preference number: 6 (lower is better)
Translates to: QVQILSSPHGQRVYV*VPVGEWDGRPISLW
Trigger: CCAGAGAGAAATTGGCCTCCCGTCCCACTCGCCCACAGGAACCAAGACATACACCCGCTGTCCGTGGGGAGATGAAAGGATCTGAACCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS CCA 72 bp TCCTTTCATCTCCCCACGGACAGCGGGTGTATGTCTTaGTTCCTGTGGGCGAGTGGGACGGGAGGCCAATTT +
Preference number: 6 (lower is better)
Translates to: SFHLPTDSGCMS*FLWASGTGGQF
Trigger: AAATTGGCCTCCCGTCCCACTCGCCCACAGGAACCAAGACATACACCCGCTGTCCGTGGGGAGATGAAAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS CCA 72 bp CCAGCCCCATCACTCTTCACACTCGATGTCTCATCCTaGTCGTGCCAGGCAGGCTCCACTTTGGTCTCTGGT +
Preference number: 6 (lower is better)
Translates to: PAPSLFTLDVSS*SCQAGSTLVSG
Trigger: ACCAGAGACCAAAGTGGAGCCTGCCTGGCACGACCAGGATGAGACATCGAGTGTGAAGAGTGATGGGGCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS CAA 72 bp ATCCTTTCATCTCCCCACGGACAGCGGGTGTATGTCTaGGTTCCTGTGGGCGAGTGGGACGGGAGGCCAATT +
Preference number: 6 (lower is better)
Translates to: ILSSPHGQRVYV*VPVGEWDGRPI
Trigger: AATTGGCCTCCCGTCCCACTCGCCCACAGGAACCAAGACATACACCCGCTGTCCGTGGGGAGATGAAAGGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS CAA 90 bp AGAGAACGGGCAATGGTAGATGGCTCGGGAGCACCAAACAGCTTGTaGGCCAGGGCATCAGTAGGAACTTGTTGGAACCGAGGTGGCCCA +
Preference number: 6 (lower is better)
Translates to: RERAMVDGSGAPNSL*ARASVGTCWNRGGP
Trigger: TGGGCCACCTCGGTTCCAACAAGTTCCTACTGATGCCCTGGCCAACAAGCTGTTTGGTGCTCCCGAGCCATCTACCATTGCCCGTTCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS CAA 90 bp GGTAGAGAACGGGCAATGGTAGATGGCTCGGGAGCACCAAACAGCTaGTTGGCCAGGGCATCAGTAGGAACTTGTTGGAACCGAGGTGGC +
Preference number: 6 (lower is better)
Translates to: GRERAMVDGSGAPNS*LARASVGTCWNRGG
Trigger: GCCACCTCGGTTCCAACAAGTTCCTACTGATGCCCTGGCCAACAAGCTGTTTGGTGCTCCCGAGCCATCTACCATTGCCCGTTCTCTACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS CAA 90 bp ATCCAGCTCTCAGAATCCAGATCTGGGAGGCTGGCAGACAGGCCCTaGGGAAGGGTCTTCAGGTTGCTGACCTCCTCTGTTTTTGTTGGC +
Preference number: 6 (lower is better)
Translates to: IQLSESRSGRLADRP*GRVFRLLTSSVFVG
Trigger: GCCAACAAAAACAGAGGAGGTCAGCAACCTGAAGACCCTTCCCAAGGGCCTGTCTGCCAGCCTCCCAGATCTGGATTCTGAGAGCTGGAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS CAA 72 bp CGGGCAATGGTAGATGGCTCGGGAGCACCAAACAGCTaGTTGGCCAGGGCATCAGTAGGAACTTGTTGGAAC +
Preference number: 6 (lower is better)
Translates to: RAMVDGSGAPNS*LARASVGTCWN
Trigger: GTTCCAACAAGTTCCTACTGATGCCCTGGCCAACAAGCTGTTTGGTGCTCCCGAGCCATCTACCATTGCCCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS CCA 72 bp CCTGTGGGCGAGTGGGACGGGAGGCCAATTTCTCTCTaGGTACTTCGGGCTTCATGTCTATTTGCAATGGAA +
Preference number: 6 (lower is better)
Translates to: PVGEWDGRPISL*VLRASCLFAME
Trigger: TTCCATTGCAAATAGACATGAAGCCCGAAGTACCCAGAGAGAAATTGGCCTCCCGTCCCACTCGCCCACAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS CAA 72 bp GTCTCCTCCAGGGTGGCGACGCATGTAAGGTGGTGTTaGAGTGACGATGAGGATCTTATTGACATCCCGGTC +
Preference number: 6 (lower is better)
Translates to: VSSRVATHVRWC*SDDEDLIDIPV
Trigger: GACCGGGATGTCAATAAGATCCTCATCGTCACTCAAACACCACCTTACATGCGTCGCCACCCTGGAGGAGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS CAA 72 bp GCAATGGTAGATGGCTCGGGAGCACCAAACAGCTTGTaGGCCAGGGCATCAGTAGGAACTTGTTGGAACCGA +
Preference number: 6 (lower is better)
Translates to: AMVDGSGAPNSL*ARASVGTCWNR
Trigger: TCGGTTCCAACAAGTTCCTACTGATGCCCTGGCCAACAAGCTGTTTGGTGCTCCCGAGCCATCTACCATTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS CAA 90 bp TGTGGCTGCACACTTTTGTGGGCTATCTCTCCAGGTGTAGGCCAGTaGACTGCATCTCCAAAATCACCAACCTTGCTGCCCTTACGCGGT +
Preference number: 6 (lower is better)
Translates to: CGCTLLWAISPGVGQ*TASPKSPTLLPLRG
Trigger: ACCGCGTAAGGGCAGCAAGGTTGGTGATTTTGGAGATGCAGTCAACTGGCCTACACCTGGAGAGATAGCCCACAAAAGTGTGCAGCCACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS TCA 72 bp TTCATGTCCTTCTTAGGTGGCAACTTACGAGCAGGCTaGGGCTTGTGGGACTGTGGCTGCACACTTTTGTGG +
Preference number: 6 (lower is better)
Translates to: FMSFLGGNLRAG*GLWDCGCTLLW
Trigger: CCACAAAAGTGTGCAGCCACAGTCCCACAAGCCTCAGCCTGCTCGTAAGTTGCCACCTAAGAAGGACATGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS CAA 72 bp CCATCATTAATGACCTTGGCCAGTTCAGCACTCATCTaGGCACGCGAAGTGTGGTTGCCTGTACGGTCTCCT +
Preference number: 6 (lower is better)
Translates to: PSLMTLASSALI*AREVWLPVRSP
Trigger: AGGAGACCGTACAGGCAACCACACTTCGCGTGCCAAGATGAGTGCTGAACTGGCCAAGGTCATTAATGATGG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS GCA 72 bp TTTGTGGGCTATCTCTCCAGGTGTAGGCCAGTTGACTaGATCTCCAAAATCACCAACCTTGCTGCCCTTACG +
Preference number: 6 (lower is better)
Translates to: FVGYLSRCRPVD*ISKITNLAALT
Trigger: CGTAAGGGCAGCAAGGTTGGTGATTTTGGAGATGCAGTCAACTGGCCTACACCTGGAGAGATAGCCCACAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS CCA 72 bp TGTACGGTCTCCTCCAGGGTGGCGACGCATGTAAGGTaGTGTTTGAGTGACGATGAGGATCTTATTGACATC +
Preference number: 6 (lower is better)
Translates to: CTVSSRVATHVR*CLSDDEDLIDI
Trigger: GATGTCAATAAGATCCTCATCGTCACTCAAACACCACCTTACATGCGTCGCCACCCTGGAGGAGACCGTACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS CAA 72 bp ACACTTTTGTGGGCTATCTCTCCAGGTGTAGGCCAGTaGACTGCATCTCCAAAATCACCAACCTTGCTGCCC +
Preference number: 6 (lower is better)
Translates to: TLLWAISPGVGQ*TASPKSPTLLP
Trigger: GGGCAGCAAGGTTGGTGATTTTGGAGATGCAGTCAACTGGCCTACACCTGGAGAGATAGCCCACAAAAGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS GCA 72 bp GACCAGGCAGTGAAGGTATTCTTCCGCCCATCCATCTaGTCCATCTCCTCGTCAAACAGAAAGTCTAGTTCT +
Preference number: 6 (lower is better)
Translates to: DQAVKVFFRPSI*SISSSNRKSSS
Trigger: AGAACTAGACTTTCTGTTTGACGAGGAGATGGAGCAGATGGATGGGCGGAAGAATACCTTCACTGCCTGGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS TCA 72 bp ATGAGTGAAATGTCAGTGGTTAGGGCCTGTACACGGTaGAAGGAAGCAATAAGGGTGATGGGAAGGAAGCCA +
Preference number: 6 (lower is better)
Translates to: MSEMSVVRACTR*KEAIRVMGRKP
Trigger: TGGCTTCCTTCCCATCACCCTTATTGCTTCCTTTCACCGTGTACAGGCCCTAACCACTGACATTTCACTCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS TCA 72 bp CAATTTCATAGTCAGAGTCCTCTTCAGACCAGGCAGTaGAGGTATTCTTCCGCCCATCCATCTGCTCCATCT +
Preference number: 6 (lower is better)
Translates to: QFHSQSPLQTRQ*RYSSAHPSAPS
Trigger: AGATGGAGCAGATGGATGGGCGGAAGAATACCTTCACTGCCTGGTCTGAAGAGGACTCTGACTATGAAATTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS TCA 72 bp TCTGGTAGTGCTGGCGGGGAACAAACTCTGGGCAGTTaGGAAGCTGAGAAAAATCAGTTTGTGAATAATCCA +
Preference number: 6 (lower is better)
Translates to: SGSAGGEQTLGS*EAEKNQFVNNP
Trigger: TGGATTATTCACAAACTGATTTTTCTCAGCTTCTCAACTGCCCAGAGTTTGTTCCCCGCCAGCACTACCAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS TCA 72 bp CCTCATAGTCCTTCACTGTCTCCTCCTGGAAATCCTTaGATATGTCCAGCCGGAACTTTTTCTCTAGACCAT +
Preference number: 6 (lower is better)
Translates to: PHSPSLSPPGNP*ICPAGTFSLDH
Trigger: ATGGTCTAGAGAAAAAGTTCCGGCTGGACATATTCAAGGATTTCCAGGAGGAGACAGTGAAGGACTATGAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS GCA 72 bp CAAACCGTACCTGTAGCCTTCTTTGGCATCCTCCAGTaGGAGCTGCTTGAACTCTTCATACATCTTTTTATT +
Preference number: 6 (lower is better)
Translates to: QTVPVAFFGILQ*ELLELFIHLFI
Trigger: AATAAAAAGATGTATGAAGAGTTCAAGCAGCTCGCACTGGAGGATGCCAAAGAAGGCTACAGGTACGGTTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS GCA 72 bp AATTTCTCTCTGGGTACTTCGGGCTTCATGTCTATTTaGAATGGAACCCACTTGTGTTTGCTCCCTTTCTTC +
Preference number: 6 (lower is better)
Translates to: NFSLGTSGFMSI*NGTHLCLLPFF
Trigger: GAAGAAAGGGAGCAAACACAAGTGGGTTCCATTGCAAATAGACATGAAGCCCGAAGTACCCAGAGAGAAATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178636.2
CDS CCA 72 bp CTCTCTGGGTACTTCGGGCTTCATGTCTATTTGCAATaGAACCCACTTGTGTTTGTTACCTTTCTTCTTCTG +
Preference number: 6 (lower is better)
Translates to: LSGYFGLHVYLQ*NPLVFVTFLLL
Trigger: CAGAAGAAGAAAGGTAACAAACACAAGTGGGTTCCATTGCAAATAGACATGAAGCCCGAAGTACCCAGAGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071487.13
CDS CAA 72 bp CAATTTCTCTCTGGGTACTTCGGGCTTCATGTCTATTaGCAATGGAACCCACTTGTGTTTGCTCCCTTTCTT +
Preference number: 6 (lower is better)
Translates to: QFLSGYFGLHVY*QWNPLVFAPFL
Trigger: AAGAAAGGGAGCAAACACAAGTGGGTTCCATTGCAAATAGACATGAAGCCCGAAGTACCCAGAGAGAAATTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178636.2
CDS TCA 72 bp CACTTTCTTGAAGTTTTCCACTTCTTGCTTGATCTGTaGATACTCAGGCTCAAACTTCTCAGTCCACAGGTC +
Preference number: 6 (lower is better)
Translates to: HFLEVFHFLLDL*ILRLKLLSPQV
Trigger: GACCTGTGGACTGAGAAGTTTGAGCCTGAGTATTCACAGATCAAGCAAGAAGTGGAAAACTTCAAGAAAGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS CAA 90 bp GGGGTCAGAGTGTCAAACTGTTCCCGACTAATCATATTCACTTTCTaGAAGTTTTCCACTTCTTGCTTGATCTGTGAATACTCAGGCTCA +
Preference number: 6 (lower is better)
Translates to: GVRVSNCSRLIIFTF*KFSTSCLICEYSGS
Trigger: TGAGCCTGAGTATTCACAGATCAAGCAAGAAGTGGAAAACTTCAAGAAAGTGAATATGATTAGTCGGGAACAGTTTGACACTCTGACCCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2
CDS CAA 72 bp GTGTCAAACTGTTCCCGACTAATCATATTCACTTTCTaGAAGTTTTCCACTTCTTGCTTGATCTGTGAATAC +
Preference number: 6 (lower is better)
Translates to: VSNCSRLIIFTF*KFSTSCLICEY
Trigger: GTATTCACAGATCAAGCAAGAAGTGGAAAACTTCAAGAAAGTGAATATGATTAGTCGGGAACAGTTTGACAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071487.13
ENSMUST00000178636.2