RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LARGE1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000004383

Ensembl transcript IDs: ENSMUST00000004497.11, ENSMUST00000119826.7, ENSMUST00000212459.2

Found 288 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CAGGAACATCCTCCACGGGTGCTTGACTTGCAGGGCCACTGCTGCTaGGGGGTGTTGATCGAGGGAGTTGATTTTTCTTTCAGAGCTTTA +
Preference number: 1 (lower is better)
Translates to: QEHPPRVLDLQGHCC*GVLIEGVDFSFRAL
Trigger: TAAAGCTCTGAAAGAAAAATCAACTCCCTCGATCAACACCCCTCAGCAGCAGTGGCCCTGCAAGTCAAGCACCCGTGGAGGATGTTCCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR CCA 90 bp CATTTGCTTCCACTCTTCTATGTCCCATCCTGGAAGCACCCATGGTaGGCTGGGTCTCTGTCCAAGACTTCAGAAGAGAGCAGCTTTGTG +
Preference number: 1 (lower is better)
Translates to: HLLPLFYVPSWKHPW*AGSLSKTSEESSFV
Trigger: CACAAAGCTGCTCTCTTCTGAAGTCTTGGACAGAGACCCAGCCCACCATGGGTGCTTCCAGGATGGGACATAGAAGAGTGGAAGCAAATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR CCA 90 bp CTTCATTTGCTTCCACTCTTCTATGTCCCATCCTGGAAGCACCCATaGTGGGCTGGGTCTCTGTCCAAGACTTCAGAAGAGAGCAGCTTT +
Preference number: 1 (lower is better)
Translates to: LHLLPLFYVPSWKHP*WAGSLSKTSEESSF
Trigger: AAAGCTGCTCTCTTCTGAAGTCTTGGACAGAGACCCAGCCCACCATGGGTGCTTCCAGGATGGGACATAGAAGAGTGGAAGCAAATGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR TCA 90 bp TCTAGAGAGTGGAAACTTGGAATCAGGTGGTCTCAGTGTTCATCATaGAGGAAGCTGTTCACCCAGGAACATCCTCCACGGGTGCTTGAC +
Preference number: 1 (lower is better)
Translates to: SREWKLGIRWSQCSS*RKLFTQEHPPRVLD
Trigger: GTCAAGCACCCGTGGAGGATGTTCCTGGGTGAACAGCTTCCTTCATGATGAACACTGAGACCACCTGATTCCAAGTTTCCACTCTCTAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR-3UTR CCA 90 bp TGTAGTCCCTGTCATAGTACTGGATCTAGAGAGTGGAAACTTGGAATCAGGTGGTCCTGGAAGCACCCATaGTGGGCTGGGTCTCTGTCC +
Preference number: 2 (lower is better)
Translates to: CSPCHSTGSREWKLGIRWSWKHP*WAGSLS
Trigger: GGACAGAGACCCAGCCCACCATGGGTGCTTCCAGGA...CCACCTGATTCCAAGTTTCCACTCTCTAGATCCAGTACTATGACAGGGACTACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR-3UTR CCA 90 bp CCCTTTCCTTGTGGCTTGGTGATGGTCCATAGAAAATGTGAGTTGCATATAGTGGCACCCATGGTGGGCTaGGTCTCTGTCCAAGACTTC +
Preference number: 2 (lower is better)
Translates to: PFPCGLVMVHRKCELHIVAPMVG*VSVQDF
Trigger: GAAGTCTTGGACAGAGACCCAGCCCACCATGGGTGC...CACTATATGCAACTCACATTTTCTATGGACCATCACCAAGCCACAAGGAAAGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR-3UTR GCA 90 bp CACATGTCAACTCAATACAAACAGCCCAGTACAGGGTATGCCATTAGCTCTTGTAACATCCTCCACGGGTaGTTGACTTGCAGGGCCACT +
Preference number: 2 (lower is better)
Translates to: HMSTQYKQPSTGYAISSCNILHG*LTCRAT
Trigger: AGTGGCCCTGCAAGTCAAGCACCCGTGGAGGATGTT...ACAAGAGCTAATGGCATACCCTGTACTGGGCTGTTTGTATTGAGTTGACATGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR-3UTR CCA 90 bp ATAGTACTGGATCTAGAGAGTGGAAACTTGGAATCAGGTGGTCTCAGTGTTCATGCACCCATGGTGGGCTaGGTCTCTGTCCAAGACTTC +
Preference number: 2 (lower is better)
Translates to: IVLDLESGNLESGGLSVHAPMVG*VSVQDF
Trigger: GAAGTCTTGGACAGAGACCCAGCCCACCATGGGTGC...ATGAACACTGAGACCACCTGATTCCAAGTTTCCACTCTCTAGATCCAGTACTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR-3UTR GCA 90 bp AGAGTAAAGAAAATGGGTCCAGTGTCTTCCATATGCACAATGAAGAGGTTCGTGAACATCCTCCACGGGTaGTTGACTTGCAGGGCCACT +
Preference number: 2 (lower is better)
Translates to: RVKKMGPVSSICTMKRFVNILHG*LTCRAT
Trigger: AGTGGCCCTGCAAGTCAAGCACCCGTGGAGGATGTT...CACGAACCTCTTCATTGTGCATATGGAAGACACTGGACCCATTTTCTTTACTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR-3UTR CCA 90 bp ATAGTGAAGAGTAAAGAAAATGGGTCCAGTGTCTTCCATATGCACAATGAAGAGTCCTGGAAGCACCCATaGTGGGCTGGGTCTCTGTCC +
Preference number: 2 (lower is better)
Translates to: IVKSKENGSSVFHMHNEESWKHP*WAGSLS
Trigger: GGACAGAGACCCAGCCCACCATGGGTGCTTCCAGGA...CTCTTCATTGTGCATATGGAAGACACTGGACCCATTTTCTTTACTCTTCACTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR-3UTR CCA 90 bp TTCTGTAGTCCCTGTCATAGTACTGGATCTAGAGAGTGGAAACTTGGAATCAGGTTCTATGTCCCATCCTaGAAGCACCCATGGTGGGCT +
Preference number: 2 (lower is better)
Translates to: FCSPCHSTGSREWKLGIRFYVPS*KHPWWA
Trigger: AGCCCACCATGGGTGCTTCCAGGATGGGACATAGAA...CCTGATTCCAAGTTTCCACTCTCTAGATCCAGTACTATGACAGGGACTACAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR-3UTR CCA 90 bp TGTAGTCCCTGTCATAGTACTGGATCTAGAGAGTGGAAACTTGGAATCAGGTGGCTCCAGATGTTTGTTTaGGTCCTTGGGTTGCTGTCC +
Preference number: 2 (lower is better)
Translates to: CSPCHSTGSREWKLGIRWLQMFV*VLGLLS
Trigger: GGACAGCAACCCAAGGACCCAAACAAACATCTGGAG...CCACCTGATTCCAAGTTTCCACTCTCTAGATCCAGTACTATGACAGGGACTACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR-3UTR TCA 90 bp TGTAGTCCCTGTCATAGTACTGGATCTAGAGAGTGGAAACTTGGAATCAGGTGGTCTCAGTGTTCATCATaGAGGAAGCTGTTCACCCAG +
Preference number: 2 (lower is better)
Translates to: CSPCHSTGSREWKLGIRWSQCSS*RKLFTQ
Trigger: CTGGGTGAACAGCTTCCTTCATGATGAACACTGAGA...CCACCTGATTCCAAGTTTCCACTCTCTAGATCCAGTACTATGACAGGGACTACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR-3UTR TCA 90 bp CACATGTCAACTCAATACAAACAGCCCAGTACAGGGTATGCCATTAGCTCTTGTCACTTGGACAGGTCCTaGGGGGAAACTAAGTTCATC +
Preference number: 2 (lower is better)
Translates to: HMSTQYKQPSTGYAISSCHLDRS*GETKFI
Trigger: GATGAACTTAGTTTCCCCTCAGGACCTGTCCAAGTG...ACAAGAGCTAATGGCATACCCTGTACTGGGCTGTTTGTATTGAGTTGACATGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR-3UTR TCA 90 bp CACATGTCAACTCAATACAAACAGCCCAGTACAGGGTATGCCATTAGCTCTTGTAATATCCAGAAGCCCTaGCTTGGTCTGTGGCTTTGT +
Preference number: 2 (lower is better)
Translates to: HMSTQYKQPSTGYAISSCNIQKP*LGLWLC
Trigger: ACAAAGCCACAGACCAAGTCAGGGCTTCTGGATATT...ACAAGAGCTAATGGCATACCCTGTACTGGGCTGTTTGTATTGAGTTGACATGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR-3UTR TCA 90 bp CCCTTTCCTTGTGGCTTGGTGATGGTCCATAGAAAATGTGAGTTGCATATAGTGTCTCAGTGTTCATCATaGAGGAAGCTGTTCACCCAG +
Preference number: 2 (lower is better)
Translates to: PFPCGLVMVHRKCELHIVSQCSS*RKLFTQ
Trigger: CTGGGTGAACAGCTTCCTTCATGATGAACACTGAGA...CACTATATGCAACTCACATTTTCTATGGACCATCACCAAGCCACAAGGAAAGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR-3UTR TCA 90 bp ACATGTCAACTCAATACAAACAGCCCAGTACAGGGTATGCCATTAGCTCTTGTTCCTCACTTTCAACAGTaGGGCAGGGAAGAACACAGA +
Preference number: 2 (lower is better)
Translates to: TCQLNTNSPVQGMPLALVPHFQQ*GREEHR
Trigger: TCTGTGTTCTTCCCTGCCTCACTGTTGAAAGTGAGG...AACAAGAGCTAATGGCATACCCTGTACTGGGCTGTTTGTATTGAGTTGACATGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR-3UTR CCA 90 bp ATAGTACTGGATCTAGAGAGTGGAAACTTGGAATCAGGTGGTCTCAGTGTTCATCTCCAGATGTTTGTTTaGGTCCTTGGGTTGCTGTCC +
Preference number: 2 (lower is better)
Translates to: IVLDLESGNLESGGLSVHLQMFV*VLGLLS
Trigger: GGACAGCAACCCAAGGACCCAAACAAACATCTGGAG...ATGAACACTGAGACCACCTGATTCCAAGTTTCCACTCTCTAGATCCAGTACTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR-3UTR GCA 90 bp CACATGTCAACTCAATACAAACAGCCCAGTACAGGGTATGCCATTAGCTCTTGTCCAGTGTCTTCCATATaGACAATGAAGAGGTTCGTG +
Preference number: 2 (lower is better)
Translates to: HMSTQYKQPSTGYAISSCPVSSI*TMKRFV
Trigger: CACGAACCTCTTCATTGTGCATATGGAAGACACTGG...ACAAGAGCTAATGGCATACCCTGTACTGGGCTGTTTGTATTGAGTTGACATGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR-3UTR CCA 90 bp CACATGTCAACTCAATACAAACAGCCCAGTACAGGGTATGCCATTAGCTCTTGTACTGGATCTAGAGAGTaGAAACTTGGAATCAGGTGG +
Preference number: 2 (lower is better)
Translates to: HMSTQYKQPSTGYAISSCTGSRE*KLGIRW
Trigger: CCACCTGATTCCAAGTTTCCACTCTCTAGATCCAGT...ACAAGAGCTAATGGCATACCCTGTACTGGGCTGTTTGTATTGAGTTGACATGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR-3UTR TCA 90 bp TGTAGTCCCTGTCATAGTACTGGATCTAGAGAGTGGAAACTTGGAATCAGGTGGGTTGATCGAGGGAGTTaGTTTTTCTTTCAGAGCTTT +
Preference number: 2 (lower is better)
Translates to: CSPCHSTGSREWKLGIRWVDRGS*FFFQSF
Trigger: AAAGCTCTGAAAGAAAAATCAACTCCCTCGATCAAC...CCACCTGATTCCAAGTTTCCACTCTCTAGATCCAGTACTATGACAGGGACTACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR-3UTR TCA 90 bp ATAGTGAAGAGTAAAGAAAATGGGTCCAGTGTCTTCCATATGCACAATGAAGAGCCTCACTTTCAACAGTaGGGCAGGGAAGAACACAGA +
Preference number: 2 (lower is better)
Translates to: IVKSKENGSSVFHMHNEEPHFQQ*GREEHR
Trigger: TCTGTGTTCTTCCCTGCCTCACTGTTGAAAGTGAGG...CTCTTCATTGTGCATATGGAAGACACTGGACCCATTTTCTTTACTCTTCACTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR-3UTR CCA 90 bp ACATGTCAACTCAATACAAACAGCCCAGTACAGGGTATGCCATTAGCTCTTGTTACTGGATCTAGAGAGTaGAAACTTGGAATCAGGTGG +
Preference number: 2 (lower is better)
Translates to: TCQLNTNSPVQGMPLALVTGSRE*KLGIRW
Trigger: CCACCTGATTCCAAGTTTCCACTCTCTAGATCCAGT...AACAAGAGCTAATGGCATACCCTGTACTGGGCTGTTTGTATTGAGTTGACATGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR-3UTR TCA 90 bp ATAGTGAAGAGTAAAGAAAATGGGTCCAGTGTCTTCCATATGCACAATGAAGAGAATATCCAGAAGCCCTaGCTTGGTCTGTGGCTTTGT +
Preference number: 2 (lower is better)
Translates to: IVKSKENGSSVFHMHNEENIQKP*LGLWLC
Trigger: ACAAAGCCACAGACCAAGTCAGGGCTTCTGGATATT...CTCTTCATTGTGCATATGGAAGACACTGGACCCATTTTCTTTACTCTTCACTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR CAA 90 bp CCCATTTCTTCCAGTGGCTTCAATGTAGTCATACAAGTGTTCAAATaGGACTTCTGTGAACTGTTCAAGTTCTTCTATAGGCCCAAGAAG +
Preference number: 2 (lower is better)
Translates to: PISSSGFNVVIQVFK*DFCELFKFFYRPKK
Trigger: CTTCTTGGGCCTATAGAAGAACTTGAACAGTTCACAGAAGTCCAATTTGAACACTTGTATGACTACATTGAAGCCACTGGAAGAAATGGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR-3UTR GCA 90 bp CAACTCAATACAAACAGCCCAGTACAGGGTATGCCATTAGCTCTTGTTCTCATCGTTAAACTCTTCATTTaGTTCCACTCTTCTATGTCC +
Preference number: 2 (lower is better)
Translates to: QLNTNSPVQGMPLALVLIVKLFI*FHSSMS
Trigger: GGACATAGAAGAGTGGAAGCAAATGAAGAGTTTAAC...GATGAGAACAAGAGCTAATGGCATACCCTGTACTGGGCTGTTTGTATTGAGTTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR-3UTR CCA 90 bp TGTCAACTCAATACAAACAGCCCAGTACAGGGTATGCCATTAGCTCTTGTTCTCAAAGAAAAGCAGTGTTaGCTTTTGTCTTCAAAGGCT +
Preference number: 2 (lower is better)
Translates to: CQLNTNSPVQGMPLALVLKEKQC*LLSSKA
Trigger: AGCCTTTGAAGACAAAAGCCAACACTGCTTTTCTTT...GAGAACAAGAGCTAATGGCATACCCTGTACTGGGCTGTTTGTATTGAGTTGACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR-3UTR CCA 90 bp ATAGTGAAGAGTAAAGAAAATGGGTCCAGTGTCTTCCATATGCACAATGAAGAGACTGGATCTAGAGAGTaGAAACTTGGAATCAGGTGG +
Preference number: 2 (lower is better)
Translates to: IVKSKENGSSVFHMHNEETGSRE*KLGIRW
Trigger: CCACCTGATTCCAAGTTTCCACTCTCTAGATCCAGT...CTCTTCATTGTGCATATGGAAGACACTGGACCCATTTTCTTTACTCTTCACTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR-3UTR GCA 90 bp CCTTGTGGCTTGGTGATGGTCCATAGAAAATGTGAGTTGCATATAGTGTTTGGAGTTAAACTCTTCATTTaGTTCCACTCTTCTATGTCC +
Preference number: 2 (lower is better)
Translates to: PCGLVMVHRKCELHIVFGVKLFI*FHSSMS
Trigger: GGACATAGAAGAGTGGAAGCAAATGAAGAGTTTAAC...TCCAAACACTATATGCAACTCACATTTTCTATGGACCATCACCAAGCCACAAGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR-3UTR CCA 90 bp AGAGTAAAGAAAATGGGTCCAGTGTCTTCCATATGCACAATGAAGAGGTTCGTGAAAGAAAAGCAGTGTTaGCTTTTGTCTTCAAAGGCT +
Preference number: 2 (lower is better)
Translates to: RVKKMGPVSSICTMKRFVKEKQC*LLSSKA
Trigger: AGCCTTTGAAGACAAAAGCCAACACTGCTTTTCTTT...CACGAACCTCTTCATTGTGCATATGGAAGACACTGGACCCATTTTCTTTACTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR-3UTR CCA 90 bp CAACTCAATACAAACAGCCCAGTACAGGGTATGCCATTAGCTCTTGTTCTCATCGTTGCATATAGTGTTTaGACTCATATTTCTGTAGTC +
Preference number: 2 (lower is better)
Translates to: QLNTNSPVQGMPLALVLIVAYSV*THISVV
Trigger: GACTACAGAAATATGAGTCCAAACACTATATGCAAC...GATGAGAACAAGAGCTAATGGCATACCCTGTACTGGGCTGTTTGTATTGAGTTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR-3UTR CCA 90 bp TTCTTCTATAGGCCCAAGAAGGGAATCATACCTTCTGTGAGTGCTGAAGTAGTTGTTGCATATAGTGTTTaGACTCATATTTCTGTAGTC +
Preference number: 2 (lower is better)
Translates to: FFYRPKKGIIPSVSAEVVVAYSV*THISVV
Trigger: GACTACAGAAATATGAGTCCAAACACTATATGCAAC...AACTACTTCAGCACTCACAGAAGGTATGATTCCCTTCTTGGGCCTATAGAAGAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR-3UTR TCA 90 bp ATAGTGAAGAGTAAAGAAAATGGGTCCAGTGTCTTCCATATGCACAATGAAGAGCAAATTGGACTTCTGTaGACTGTTCAAGTTCTTCTA +
Preference number: 2 (lower is better)
Translates to: IVKSKENGSSVFHMHNEEQIGLL*TVQVLL
Trigger: TAGAAGAACTTGAACAGTTCACAGAAGTCCAATTTG...CTCTTCATTGTGCATATGGAAGACACTGGACCCATTTTCTTTACTCTTCACTAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR-3UTR CCA 90 bp ATAGTGAAGAGTAAAGAAAATGGGTCCAGTGTCTTCCATATGCACAATGAAGAGAAAGAAAAGCAGTGTTaGCTTTTGTCTTCAAAGGCT +
Preference number: 2 (lower is better)
Translates to: IVKSKENGSSVFHMHNEEKEKQC*LLSSKA
Trigger: AGCCTTTGAAGACAAAAGCCAACACTGCTTTTCTTT...CTCTTCATTGTGCATATGGAAGACACTGGACCCATTTTCTTTACTCTTCACTAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR GCA 72 bp GAAGGAAGCTGTTCACCCAGGAACATCCTCCACGGGTaGTTGACTTGCAGGGCCACTGCTGCTGAGGGGTGT +
Preference number: 3 (lower is better)
Translates to: EGSCSPRNILHG*LTCRATAAEGC
Trigger: ACACCCCTCAGCAGCAGTGGCCCTGCAAGTCAAGCACCCGTGGAGGATGTTCCTGGGTGAACAGCTTCCTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR TCA 72 bp GAAGCTGTTCACCCAGGAACATCCTCCACGGGTGCTTaGCTTGCAGGGCCACTGCTGCTGAGGGGTGTTGAT +
Preference number: 3 (lower is better)
Translates to: EAVHPGTSSTGA*LAGPLLLRGVD
Trigger: ATCAACACCCCTCAGCAGCAGTGGCCCTGCAAGTCAAGCACCCGTGGAGGATGTTCCTGGGTGAACAGCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR CCA 72 bp GGCTTTTGTCTTCAAAGGCTGGGCCCCAGCAGGAAGTaGTTCTTCCCTTGTGGCACGTCTCTCCCTAGTGGT +
Preference number: 3 (lower is better)
Translates to: GFCLQRLGPSRK*FFPCGTSLPSG
Trigger: ACCACTAGGGAGAGACGTGCCACAAGGGAAGAACCACTTCCTGCTGGGGCCCAGCCTTTGAAGACAAAAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR CCA 72 bp CCACTCTTCTATGTCCCATCCTGGAAGCACCCATGGTaGGCTGGGTCTCTGTCCAAGACTTCAGAAGAGAGC +
Preference number: 3 (lower is better)
Translates to: PLFYVPSWKHPW*AGSLSKTSEES
Trigger: GCTCTCTTCTGAAGTCTTGGACAGAGACCCAGCCCACCATGGGTGCTTCCAGGATGGGACATAGAAGAGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR CCA 72 bp CTTCCACTCTTCTATGTCCCATCCTGGAAGCACCCATaGTGGGCTGGGTCTCTGTCCAAGACTTCAGAAGAG +
Preference number: 3 (lower is better)
Translates to: LPLFYVPSWKHP*WAGSLSKTSEE
Trigger: CTCTTCTGAAGTCTTGGACAGAGACCCAGCCCACCATGGGTGCTTCCAGGATGGGACATAGAAGAGTGGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR CCA 72 bp ACTCTTCATTTGCTTCCACTCTTCTATGTCCCATCCTaGAAGCACCCATGGTGGGCTGGGTCTCTGTCCAAG +
Preference number: 3 (lower is better)
Translates to: TLHLLPLFYVPS*KHPWWAGSLSK
Trigger: CTTGGACAGAGACCCAGCCCACCATGGGTGCTTCCAGGATGGGACATAGAAGAGTGGAAGCAAATGAAGAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR-3UTR CAA 90 bp TGTAGTCCCTGTCATAGTACTGGATCTAGAGAGTGGAAACTTGGAATCAGGTGGATCCTCCACGGGTGCTaGACTTGCAGGGCCACTGCT +
Preference number: 3 (lower is better)
Translates to: CSPCHSTGSREWKLGIRWILHGC*TCRATA
Trigger: AGCAGTGGCCCTGCAAGTCAAGCACCCGTGGAGGAT...CCACCTGATTCCAAGTTTCCACTCTCTAGATCCAGTACTATGACAGGGACTACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR GCA 72 bp ATGAGAGTCTCCAGATGTTTGTTTGGGTCCTTGGGTTaGTGTCCATATGGGTACCCAGCTAGGTGGCAGGAT +
Preference number: 3 (lower is better)
Translates to: MRVSRCLFGSLG*CPYGYPARWQD
Trigger: ATCCTGCCACCTAGCTGGGTACCCATATGGACAGCAACCCAAGGACCCAAACAAACATCTGGAGACTCTCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR-3UTR CAA 90 bp CCTTGTGGCTTGGTGATGGTCCATAGAAAATGTGAGTTGCATATAGTGTTTGGAATCCTCCACGGGTGCTaGACTTGCAGGGCCACTGCT +
Preference number: 3 (lower is better)
Translates to: PCGLVMVHRKCELHIVFGILHGC*TCRATA
Trigger: AGCAGTGGCCCTGCAAGTCAAGCACCCGTGGAGGAT...TCCAAACACTATATGCAACTCACATTTTCTATGGACCATCACCAAGCCACAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR TCA 72 bp TGGAAACTTGGAATCAGGTGGTCTCAGTGTTCATCATaGAGGAAGCTGTTCACCCAGGAACATCCTCCACGG +
Preference number: 3 (lower is better)
Translates to: WKLGIRWSQCSS*RKLFTQEHPPR
Trigger: CCGTGGAGGATGTTCCTGGGTGAACAGCTTCCTTCATGATGAACACTGAGACCACCTGATTCCAAGTTTCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR-3UTR CAA 90 bp TGTAGTCCCTGTCATAGTACTGGATCTAGAGAGTGGAAACTTGGAATCAGGTGGAAGCAGTGTTGGCTTTaGTCTTCAAAGGCTGGGCCC +
Preference number: 3 (lower is better)
Translates to: CSPCHSTGSREWKLGIRWKQCWL*SSKAGP
Trigger: GGGCCCAGCCTTTGAAGACAAAAGCCAACACTGCTT...CCACCTGATTCCAAGTTTCCACTCTCTAGATCCAGTACTATGACAGGGACTACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR-3UTR CAA 90 bp AGAGTAAAGAAAATGGGTCCAGTGTCTTCCATATGCACAATGAAGAGGTTCGTGGTTTGGGTCCTTGGGTaGCTGTCCATATGGGTACCC +
Preference number: 3 (lower is better)
Translates to: RVKKMGPVSSICTMKRFVVWVLG*LSIWVP
Trigger: GGGTACCCATATGGACAGCAACCCAAGGACCCAAAC...CACGAACCTCTTCATTGTGCATATGGAAGACACTGGACCCATTTTCTTTACTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR-3UTR CAA 90 bp ATAGTGAAGAGTAAAGAAAATGGGTCCAGTGTCTTCCATATGCACAATGAAGAGATCCTCCACGGGTGCTaGACTTGCAGGGCCACTGCT +
Preference number: 3 (lower is better)
Translates to: IVKSKENGSSVFHMHNEEILHGC*TCRATA
Trigger: AGCAGTGGCCCTGCAAGTCAAGCACCCGTGGAGGAT...CTCTTCATTGTGCATATGGAAGACACTGGACCCATTTTCTTTACTCTTCACTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR-3UTR CAA 90 bp ATAGTACTGGATCTAGAGAGTGGAAACTTGGAATCAGGTGGTCTCAGTGTTCATAAGCAGTGTTGGCTTTaGTCTTCAAAGGCTGGGCCC +
Preference number: 3 (lower is better)
Translates to: IVLDLESGNLESGGLSVHKQCWL*SSKAGP
Trigger: GGGCCCAGCCTTTGAAGACAAAAGCCAACACTGCTT...ATGAACACTGAGACCACCTGATTCCAAGTTTCCACTCTCTAGATCCAGTACTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR-3UTR CAA 90 bp AGTGTTTGGACTCATATTTCTGTAGTCCCTGTCATAGTACTGGATCTAGAGAGTGTTTGGGTCCTTGGGTaGCTGTCCATATGGGTACCC +
Preference number: 3 (lower is better)
Translates to: SVWTHISVVPVIVLDLESVWVLG*LSIWVP
Trigger: GGGTACCCATATGGACAGCAACCCAAGGACCCAAAC...ACTCTCTAGATCCAGTACTATGACAGGGACTACAGAAATATGAGTCCAAACACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR-3UTR CAA 90 bp CTGTTCAAGTTCTTCTATAGGCCCAAGAAGGGAATCATACCTTCTGTGAGTGCTTCTCCAGATGTTTGTTaGGGTCCTTGGGTTGCTGTC +
Preference number: 3 (lower is better)
Translates to: LFKFFYRPKKGIIPSVSASPDVC*GPWVAV
Trigger: GACAGCAACCCAAGGACCCAAACAAACATCTGGAGA...AGCACTCACAGAAGGTATGATTCCCTTCTTGGGCCTATAGAAGAACTTGAACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR TCA 72 bp ATCCCTCCTTCAGGTCCCTCATGTGTAATGTCCATATaGGAGTCTCCAGATGTTTGTTTGGGTCCTTGGGTT +
Preference number: 3 (lower is better)
Translates to: IPPSGPSCVMSI*ESPDVCLGPWV
Trigger: AACCCAAGGACCCAAACAAACATCTGGAGACTCTCATATGGACATTACACATGAGGGACCTGAAGGAGGGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR CCA 72 bp TTCCATATGCACAATGAAGAGGTTCGTGCCAACACTTaGACAGGTCCTGAGGGGAAACTAAGTTCATCAGCT +
Preference number: 3 (lower is better)
Translates to: FHMHNEEVRANT*TGPEGKLSSSA
Trigger: AGCTGATGAACTTAGTTTCCCCTCAGGACCTGTCCAAGTGTTGGCACGAACCTCTTCATTGTGCATATGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR-3UTR CAA 90 bp AGTGTTTGGACTCATATTTCTGTAGTCCCTGTCATAGTACTGGATCTAGAGAGTAAGCAGTGTTGGCTTTaGTCTTCAAAGGCTGGGCCC +
Preference number: 3 (lower is better)
Translates to: SVWTHISVVPVIVLDLESKQCWL*SSKAGP
Trigger: GGGCCCAGCCTTTGAAGACAAAAGCCAACACTGCTT...ACTCTCTAGATCCAGTACTATGACAGGGACTACAGAAATATGAGTCCAAACACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR-3UTR CAA 90 bp TTCTTCTATAGGCCCAAGAAGGGAATCATACCTTCTGTGAGTGCTGAAGTAGTTTCTCCAGATGTTTGTTaGGGTCCTTGGGTTGCTGTC +
Preference number: 3 (lower is better)
Translates to: FFYRPKKGIIPSVSAEVVSPDVC*GPWVAV
Trigger: GACAGCAACCCAAGGACCCAAACAAACATCTGGAGA...AACTACTTCAGCACTCACAGAAGGTATGATTCCCTTCTTGGGCCTATAGAAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR-3UTR CAA 90 bp TGTAGTCCCTGTCATAGTACTGGATCTAGAGAGTGGAAACTTGGAATCAGGTGGCAAAGAAAAGCAGTGTaGGCTTTTGTCTTCAAAGGC +
Preference number: 3 (lower is better)
Translates to: CSPCHSTGSREWKLGIRWQRKAV*AFVFKG
Trigger: GCCTTTGAAGACAAAAGCCAACACTGCTTTTCTTTG...CCACCTGATTCCAAGTTTCCACTCTCTAGATCCAGTACTATGACAGGGACTACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR-3UTR CAA 90 bp ACATGTCAACTCAATACAAACAGCCCAGTACAGGGTATGCCATTAGCTCTTGTTCAAAGAAAAGCAGTGTaGGCTTTTGTCTTCAAAGGC +
Preference number: 3 (lower is better)
Translates to: TCQLNTNSPVQGMPLALVQRKAV*AFVFKG
Trigger: GCCTTTGAAGACAAAAGCCAACACTGCTTTTCTTTG...AACAAGAGCTAATGGCATACCCTGTACTGGGCTGTTTGTATTGAGTTGACATGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR CCA 72 bp GGAAGAACACAGAGATACCTGACCCATTTCTTCCAGTaGCTTCAATGTAGTCATACAAGTGTTCAAATTGGA +
Preference number: 3 (lower is better)
Translates to: GRTQRYLTHFFQ*LQCSHTSVQIG
Trigger: TCCAATTTGAACACTTGTATGACTACATTGAAGCCACTGGAAGAAATGGGTCAGGTATCTCTGTGTTCTTCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR TCA 90 bp GCCCCAGCAGGAAGTGGTTCTTCCCTTGTGGCACGTCTCTCCCTAGTGGTGGCTGACCCTGGGCCAGGCTaGGCTGCCTGCGCAGAGCAC +
Preference number: 4 (lower is better)
Translates to: APAGSGSSLVARLSLVVADPGPG*AACAEH
Trigger: GTGCTCTGCGCAGGCAGCTCAGCCTGGCCCAGGGTC...AGCCACCACTAGGGAGAGACGTGCCACAAGGGAAGAACCACTTCCTGCTGGGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR TCA 90 bp GGCCCCAGCAGGAAGTGGTTCTTCCCTTGTGGCACGTCTCTCCCTAGTGGTGGCCGTTCTGCCGGCTCATaGGCACCTCGGATCCCTGGG +
Preference number: 4 (lower is better)
Translates to: GPSRKWFFPCGTSLPSGGRSAGS*APRIPG
Trigger: CCCAGGGATCCGAGGTGCTCATGAGCCGGCAGAACG...GCCACCACTAGGGAGAGACGTGCCACAAGGGAAGAACCACTTCCTGCTGGGGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR TCA 90 bp GGCCCCAGCAGGAAGTGGTTCTTCCCTTGTGGCACGTCTCTCCCTAGTGGTGGCGGTAGAGGGCCAGGCTaGTGGGTCCCTCCCAGTGTT +
Preference number: 4 (lower is better)
Translates to: GPSRKWFFPCGTSLPSGGGRGPG*WVPPSV
Trigger: AACACTGGGAGGGACCCATCAGCCTGGCCCTCTACC...GCCACCACTAGGGAGAGACGTGCCACAAGGGAAGAACCACTTCCTGCTGGGGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp GGCCCCAGCAGGAAGTGGTTCTTCCCTTGTGGCACGTCTCTCCCTAGTGGTGGCCGGGGACTGTGGGCTTaGGACTCCAGGGGAGACAGA +
Preference number: 4 (lower is better)
Translates to: GPSRKWFFPCGTSLPSGGRGLWA*DSRGDR
Trigger: TCTGTCTCCCCTGGAGTCCCAAGCCCACAGTCCCCG...GCCACCACTAGGGAGAGACGTGCCACAAGGGAAGAACCACTTCCTGCTGGGGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp GGCCCCAGCAGGAAGTGGTTCTTCCCTTGTGGCACGTCTCTCCCTAGTGGTGGCGTGTACCGGGGACTGTaGGCTTGGGACTCCAGGGGA +
Preference number: 4 (lower is better)
Translates to: GPSRKWFFPCGTSLPSGGVYRGL*AWDSRG
Trigger: TCCCCTGGAGTCCCAAGCCCACAGTCCCCGGTACAC...GCCACCACTAGGGAGAGACGTGCCACAAGGGAAGAACCACTTCCTGCTGGGGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR TCA 90 bp GCTTTTGTCTTCAAAGGCTGGGCCCCAGCAGGAAGTGGTTCTTCCCTTGTGGCAGACCCTGGGCCAGGCTaGGCTGCCTGCGCAGAGCAC +
Preference number: 4 (lower is better)
Translates to: AFVFKGWAPAGSGSSLVADPGPG*AACAEH
Trigger: GTGCTCTGCGCAGGCAGCTCAGCCTGGCCCAGGGTC...TGCCACAAGGGAAGAACCACTTCCTGCTGGGGCCCAGCCTTTGAAGACAAAAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR TCA 90 bp GGCCCCAGCAGGAAGTGGTTCTTCCCTTGTGGCACGTCTCTCCCTAGTGGTGGCGGGTTCTGTGGACAGTaGAGCGCTCTCGCCGGAACT +
Preference number: 4 (lower is better)
Translates to: GPSRKWFFPCGTSLPSGGGFCGQ*SALAGT
Trigger: AGTTCCGGCGAGAGCGCTTCACTGTCCACAGAACCC...GCCACCACTAGGGAGAGACGTGCCACAAGGGAAGAACCACTTCCTGCTGGGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR GCA 90 bp GCCCCAGCAGGAAGTGGTTCTTCCCTTGTGGCACGTCTCTCCCTAGTGGTGGCTTGGGCCAGGCTGAGCTaGCTGCGCAGAGCACGGTTT +
Preference number: 4 (lower is better)
Translates to: APAGSGSSLVARLSLVVAWARLS*LRRARF
Trigger: AAACCGTGCTCTGCGCAGGCAGCTCAGCCTGGCCCA...AGCCACCACTAGGGAGAGACGTGCCACAAGGGAAGAACCACTTCCTGCTGGGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR GCA 90 bp CCATGGTGGGCTGGGTCTCTGTCCAAGACTTCAGAAGAGAGCAGCTTTGTGGGGTGGGCCAGGCTGAGCTaGCTGCGCAGAGCACGGTTT +
Preference number: 4 (lower is better)
Translates to: PWWAGSLSKTSEESSFVGWARLS*LRRARF
Trigger: AAACCGTGCTCTGCGCAGGCAGCTCAGCCTGGCCCA...CCCCACAAAGCTGCTCTCTTCTGAAGTCTTGGACAGAGACCCAGCCCACCATGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR TCA 90 bp GCCCCAGCAGGAAGTGGTTCTTCCCTTGTGGCACGTCTCTCCCTAGTGGTGGCTCAGATTTCACCAGGGTaGCAACGTCCCTGCTGGCAT +
Preference number: 4 (lower is better)
Translates to: APAGSGSSLVARLSLVVAQISPG*QRPCWH
Trigger: ATGCCAGCAGGGACGTTGTCACCCTGGTGAAATCTG...AGCCACCACTAGGGAGAGACGTGCCACAAGGGAAGAACCACTTCCTGCTGGGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR TCA 90 bp GCCCCAGCAGGAAGTGGTTCTTCCCTTGTGGCACGTCTCTCCCTAGTGGTGGCTCGGTGTCTAGGACAATaGCTCTCTCCAGGTTGGCAG +
Preference number: 4 (lower is better)
Translates to: APAGSGSSLVARLSLVVARCLGQ*LSPGWQ
Trigger: CTGCCAACCTGGAGAGAGTCATTGTCCTAGACACCG...AGCCACCACTAGGGAGAGACGTGCCACAAGGGAAGAACCACTTCCTGCTGGGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR TCA 90 bp CCATGGTGGGCTGGGTCTCTGTCCAAGACTTCAGAAGAGAGCAGCTTTGTGGGGGGGTTCTGTGGACAGTaGAGCGCTCTCGCCGGAACT +
Preference number: 4 (lower is better)
Translates to: PWWAGSLSKTSEESSFVGGFCGQ*SALAGT
Trigger: AGTTCCGGCGAGAGCGCTTCACTGTCCACAGAACCC...CCCCACAAAGCTGCTCTCTTCTGAAGTCTTGGACAGAGACCCAGCCCACCATGG
59% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp GCCCCAGCAGGAAGTGGTTCTTCCCTTGTGGCACGTCTCTCCCTAGTGGTGGCTTGCTCAGAGCGGGTGTaGTCTGACAGCTGCACATTC +
Preference number: 4 (lower is better)
Translates to: APAGSGSSLVARLSLVVACSERV*SDSCTF
Trigger: GAATGTGCAGCTGTCAGACCACACCCGCTCTGAGCA...AGCCACCACTAGGGAGAGACGTGCCACAAGGGAAGAACCACTTCCTGCTGGGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR TCA 90 bp GTGTTGGCTTTTGTCTTCAAAGGCTGGGCCCCAGCAGGAAGTGGTTCTTCCCTTGGTAGAGGGCCAGGCTaGTGGGTCCCTCCCAGTGTT +
Preference number: 4 (lower is better)
Translates to: VLAFVFKGWAPAGSGSSLGRGPG*WVPPSV
Trigger: AACACTGGGAGGGACCCATCAGCCTGGCCCTCTACC...AAGGGAAGAACCACTTCCTGCTGGGGCCCAGCCTTTGAAGACAAAAGCCAACAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR TCA 90 bp GGCCCCAGCAGGAAGTGGTTCTTCCCTTGTGGCACGTCTCTCCCTAGTGGTGGCCAGCAGCTCTGCTTTTaGCTTGGGGAAAGAGAGTCT +
Preference number: 4 (lower is better)
Translates to: GPSRKWFFPCGTSLPSGGQQLCF*LGERES
Trigger: AGACTCTCTTTCCCCAAGTCAAAAGCAGAGCTGCTG...GCCACCACTAGGGAGAGACGTGCCACAAGGGAAGAACCACTTCCTGCTGGGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR GCA 90 bp GGCCCCAGCAGGAAGTGGTTCTTCCCTTGTGGCACGTCTCTCCCTAGTGGTGGCCATGAGTTCCCTCTCTaGTGTCAGTCTCCACATCTG +
Preference number: 4 (lower is better)
Translates to: GPSRKWFFPCGTSLPSGGHEFPL*CQSPHL
Trigger: CAGATGTGGAGACTGACAGCAGAGAGGGAACTCATG...GCCACCACTAGGGAGAGACGTGCCACAAGGGAAGAACCACTTCCTGCTGGGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp GCCCCAGCAGGAAGTGGTTCTTCCCTTGTGGCACGTCTCTCCCTAGTGGTGGCTGAATCAGCAATGAGGTaGAAGTGCAGAGGGTTCCGC +
Preference number: 4 (lower is better)
Translates to: APAGSGSSLVARLSLVVAESAMR*KCRGFR
Trigger: GCGGAACCCTCTGCACTTCCACCTCATTGCTGATTC...AGCCACCACTAGGGAGAGACGTGCCACAAGGGAAGAACCACTTCCTGCTGGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp GCCCCAGCAGGAAGTGGTTCTTCCCTTGTGGCACGTCTCTCCCTAGTGGTGGCTGGTACCATCCAGGTCTaGAAGAGTGTAGCCAGGATC +
Preference number: 4 (lower is better)
Translates to: APAGSGSSLVARLSLVVAGTIQV*KSVARI
Trigger: GATCCTGGCTACACTCTTCCAGACCTGGATGGTACC...AGCCACCACTAGGGAGAGACGTGCCACAAGGGAAGAACCACTTCCTGCTGGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp GGCCCCAGCAGGAAGTGGTTCTTCCCTTGTGGCACGTCTCTCCCTAGTGGTGGCTGCCCTTTGAACTTATaGAACACGGCCCACAGCTCT +
Preference number: 4 (lower is better)
Translates to: GPSRKWFFPCGTSLPSGGCPLNL*NTAHSS
Trigger: AGAGCTGTGGGCCGTGTTCCATAAGTTCAAAGGGCA...GCCACCACTAGGGAGAGACGTGCCACAAGGGAAGAACCACTTCCTGCTGGGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp GGCCCCAGCAGGAAGTGGTTCTTCCCTTGTGGCACGTCTCTCCCTAGTGGTGGCCCCAGTGTTTACAGATaGCCTCCAGCATCTGTAGTC +
Preference number: 4 (lower is better)
Translates to: GPSRKWFFPCGTSLPSGGPSVYR*PPASVV
Trigger: GACTACAGATGCTGGAGGCCATCTGTAAACACTGGG...GCCACCACTAGGGAGAGACGTGCCACAAGGGAAGAACCACTTCCTGCTGGGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp CCATGGTGGGCTGGGTCTCTGTCCAAGACTTCAGAAGAGAGCAGCTTTGTGGGGCCTGGTAAGGTGTGGTaGCAGTCCGCCACTTGGCAA +
Preference number: 4 (lower is better)
Translates to: PWWAGSLSKTSEESSFVGPGKVW*QSATWQ
Trigger: TTGCCAAGTGGCGGACTGCCACCACACCTTACCAGG...CCCCACAAAGCTGCTCTCTTCTGAAGTCTTGGACAGAGACCCAGCCCACCATGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR TCA 90 bp GGCCCCAGCAGGAAGTGGTTCTTCCCTTGTGGCACGTCTCTCCCTAGTGGTGGCCTTCCTTCAGGGTTTTaGGACAGATGCGGTATTGCT +
Preference number: 4 (lower is better)
Translates to: GPSRKWFFPCGTSLPSGGLPSGF*DRCGIA
Trigger: AGCAATACCGCATCTGTCTCAAAACCCTGAAGGAAG...GCCACCACTAGGGAGAGACGTGCCACAAGGGAAGAACCACTTCCTGCTGGGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR GCA 90 bp CCATGGTGGGCTGGGTCTCTGTCCAAGACTTCAGAAGAGAGCAGCTTTGTGGGGTTTTCCACAGCTGGCTaGTGCCCACACTCAGAGCTG +
Preference number: 4 (lower is better)
Translates to: PWWAGSLSKTSEESSFVGFSTAG*CPHSEL
Trigger: CAGCTCTGAGTGTGGGCAGCAGCCAGCTGTGGAAAA...CCCCACAAAGCTGCTCTCTTCTGAAGTCTTGGACAGAGACCCAGCCCACCATGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR GCA 90 bp GGCCCCAGCAGGAAGTGGTTCTTCCCTTGTGGCACGTCTCTCCCTAGTGGTGGCGGCAAAGTTTGTGGGTaGATGGCCTTTAGTCCATAC +
Preference number: 4 (lower is better)
Translates to: GPSRKWFFPCGTSLPSGGGKVCG*MAFSPY
Trigger: GTATGGACTAAAGGCCATGCACCCACAAACTTTGCC...GCCACCACTAGGGAGAGACGTGCCACAAGGGAAGAACCACTTCCTGCTGGGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp CCATGGTGGGCTGGGTCTCTGTCCAAGACTTCAGAAGAGAGCAGCTTTGTGGGGCTGTCCCCTCCTCCATaGAGTAGGTCTTGGAGTGGT +
Preference number: 4 (lower is better)
Translates to: PWWAGSLSKTSEESSFVGLSPPP*SRSWSG
Trigger: ACCACTCCAAGACCTACTCCATGGAGGAGGGGACAG...CCCCACAAAGCTGCTCTCTTCTGAAGTCTTGGACAGAGACCCAGCCCACCATGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp GCCCCAGCAGGAAGTGGTTCTTCCCTTGTGGCACGTCTCTCCCTAGTGGTGGCTAGATACCAGTCACTCTaGTTCTCTACCAAGCCCAGG +
Preference number: 4 (lower is better)
Translates to: APAGSGSSLVARLSLVVARYQSL*FSTKPR
Trigger: CCTGGGCTTGGTAGAGAACCAGAGTGACTGGTATCT...AGCCACCACTAGGGAGAGACGTGCCACAAGGGAAGAACCACTTCCTGCTGGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp CCATGGTGGGCTGGGTCTCTGTCCAAGACTTCAGAAGAGAGCAGCTTTGTGGGGTACAGGTGGGTTCTGTaGACAGTGAAGCGCTCTCGC +
Preference number: 4 (lower is better)
Translates to: PWWAGSLSKTSEESSFVGYRWVL*TVKRSR
Trigger: GCGAGAGCGCTTCACTGTCCACAGAACCCACCTGTA...CCCCACAAAGCTGCTCTCTTCTGAAGTCTTGGACAGAGACCCAGCCCACCATGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp GCTTTTGTCTTCAAAGGCTGGGCCCCAGCAGGAAGTGGTTCTTCCCTTGTGGCACCTGGTAAGGTGTGGTaGCAGTCCGCCACTTGGCAA +
Preference number: 4 (lower is better)
Translates to: AFVFKGWAPAGSGSSLVAPGKVW*QSATWQ
Trigger: TTGCCAAGTGGCGGACTGCCACCACACCTTACCAGG...TGCCACAAGGGAAGAACCACTTCCTGCTGGGGCCCAGCCTTTGAAGACAAAAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp GCCCCAGCAGGAAGTGGTTCTTCCCTTGTGGCACGTCTCTCCCTAGTGGTGGCTTTGGCAAGGTCAAGCTaGATGACAGATTTCCTGAGG +
Preference number: 4 (lower is better)
Translates to: APAGSGSSLVARLSLVVALARSS*MTDFLR
Trigger: CCTCAGGAAATCTGTCATCCAGCTTGACCTTGCCAA...AGCCACCACTAGGGAGAGACGTGCCACAAGGGAAGAACCACTTCCTGCTGGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp GCCCCAGCAGGAAGTGGTTCTTCCCTTGTGGCACGTCTCTCCCTAGTGGTGGCTGCTCTGCTTTTGACTTaGGGAAAGAGAGTCTGTAGC +
Preference number: 4 (lower is better)
Translates to: APAGSGSSLVARLSLVVAALLLT*GKRVCS
Trigger: GCTACAGACTCTCTTTCCCCAAGTCAAAAGCAGAGC...AGCCACCACTAGGGAGAGACGTGCCACAAGGGAAGAACCACTTCCTGCTGGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR TCA 90 bp CCATGGTGGGCTGGGTCTCTGTCCAAGACTTCAGAAGAGAGCAGCTTTGTGGGGCAGAAGCAGGGAAGCTaGTACACCAGAAAGGGGTTT +
Preference number: 4 (lower is better)
Translates to: PWWAGSLSKTSEESSFVGQKQGS*YTRKGF
Trigger: AAACCCCTTTCTGGTGTATCAGCTTCCCTGCTTCTG...CCCCACAAAGCTGCTCTCTTCTGAAGTCTTGGACAGAGACCCAGCCCACCATGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR GCA 90 bp GTGTTGGCTTTTGTCTTCAAAGGCTGGGCCCCAGCAGGAAGTGGTTCTTCCCTTCTCAGAGCTGTTACCTaGCACAATGCCAGCTCGCAG +
Preference number: 4 (lower is better)
Translates to: VLAFVFKGWAPAGSGSSLLRAVT*HNASSQ
Trigger: CTGCGAGCTGGCATTGTGGCAGGTAACAGCTCTGAG...AAGGGAAGAACCACTTCCTGCTGGGGCCCAGCCTTTGAAGACAAAAGCCAACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR GCA 90 bp GCACCCATGGTGGGCTGGGTCTCTGTCCAAGACTTCAGAAGAGAGCAGCTTTGTCACGGCCCACAGCTCTaGAATGTCTGTTGCAAAGGT +
Preference number: 4 (lower is better)
Translates to: APMVGWVSVQDFRREQLCHGPQL*NVCCKG
Trigger: ACCTTTGCAACAGACATTGCAGAGCTGTGGGCCGTG...ACAAAGCTGCTCTCTTCTGAAGTCTTGGACAGAGACCCAGCCCACCATGGGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp GTGTTGGCTTTTGTCTTCAAAGGCTGGGCCCCAGCAGGAAGTGGTTCTTCCCTTCCATGGAGTAGGTCTTaGAGTGGTTCCCACGGTGGT +
Preference number: 4 (lower is better)
Translates to: VLAFVFKGWAPAGSGSSLPWSRS*SGSHGG
Trigger: ACCACCGTGGGAACCACTCCAAGACCTACTCCATGG...AAGGGAAGAACCACTTCCTGCTGGGGCCCAGCCTTTGAAGACAAAAGCCAACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp GCACCCATGGTGGGCTGGGTCTCTGTCCAAGACTTCAGAAGAGAGCAGCTTTGTTGGCAGTCCGCCACTTaGCAAAGTTTGTGGGTGCAT +
Preference number: 4 (lower is better)
Translates to: APMVGWVSVQDFRREQLCWQSAT*QSLWVH
Trigger: ATGCACCCACAAACTTTGCCAAGTGGCGGACTGCCA...ACAAAGCTGCTCTCTTCTGAAGTCTTGGACAGAGACCCAGCCCACCATGGGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR TCA 90 bp GCACCCATGGTGGGCTGGGTCTCTGTCCAAGACTTCAGAAGAGAGCAGCTTTGTCAGAAGCAGGGAAGCTaGTACACCAGAAAGGGGTTT +
Preference number: 4 (lower is better)
Translates to: APMVGWVSVQDFRREQLCQKQGS*YTRKGF
Trigger: AAACCCCTTTCTGGTGTATCAGCTTCCCTGCTTCTG...ACAAAGCTGCTCTCTTCTGAAGTCTTGGACAGAGACCCAGCCCACCATGGGTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR TCA 90 bp CTGTTCAAGTTCTTCTATAGGCCCAAGAAGGGAATCATACCTTCTGTGAGTGCTCGTTCTGCCGGCTCATaGGCACCTCGGATCCCTGGG +
Preference number: 4 (lower is better)
Translates to: LFKFFYRPKKGIIPSVSARSAGS*APRIPG
Trigger: CCCAGGGATCCGAGGTGCTCATGAGCCGGCAGAACG...AGCACTCACAGAAGGTATGATTCCCTTCTTGGGCCTATAGAAGAACTTGAACAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR TCA 90 bp GCCCCAGCAGGAAGTGGTTCTTCCCTTGTGGCACGTCTCTCCCTAGTGGTGGCTTGTTGTTCTCAGCTGTaGGATATTTCAAGGCAGCAA +
Preference number: 4 (lower is better)
Translates to: APAGSGSSLVARLSLVVACCSQL*DISRQQ
Trigger: TTGCTGCCTTGAAATATCTCACAGCTGAGAACAACA...AGCCACCACTAGGGAGAGACGTGCCACAAGGGAAGAACCACTTCCTGCTGGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR GCA 90 bp TGTAGTCCCTGTCATAGTACTGGATCTAGAGAGTGGAAACTTGGAATCAGGTGGTGGGCCAGGCTGAGCTaGCTGCGCAGAGCACGGTTT +
Preference number: 4 (lower is better)
Translates to: CSPCHSTGSREWKLGIRWWARLS*LRRARF
Trigger: AAACCGTGCTCTGCGCAGGCAGCTCAGCCTGGCCCA...CCACCTGATTCCAAGTTTCCACTCTCTAGATCCAGTACTATGACAGGGACTACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp GCCCCAGCAGGAAGTGGTTCTTCCCTTGTGGCACGTCTCTCCCTAGTGGTGGCTCAGAGTAATGTTTGTTaGGAATCCAGGACACTTCAG +
Preference number: 4 (lower is better)
Translates to: APAGSGSSLVARLSLVVAQSNVC*ESRTLQ
Trigger: CTGAAGTGTCCTGGATTCCCAACAAACATTACTCTG...AGCCACCACTAGGGAGAGACGTGCCACAAGGGAAGAACCACTTCCTGCTGGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR TCA 90 bp ATAGTACTGGATCTAGAGAGTGGAAACTTGGAATCAGGTGGTCTCAGTGTTCATCGTTCTGCCGGCTCATaGGCACCTCGGATCCCTGGG +
Preference number: 4 (lower is better)
Translates to: IVLDLESGNLESGGLSVHRSAGS*APRIPG
Trigger: CCCAGGGATCCGAGGTGCTCATGAGCCGGCAGAACG...ATGAACACTGAGACCACCTGATTCCAAGTTTCCACTCTCTAGATCCAGTACTAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR GCA 90 bp GCTTTTGTCTTCAAAGGCTGGGCCCCAGCAGGAAGTGGTTCTTCCCTTGTGGCAGGCAAAGTTTGTGGGTaGATGGCCTTTAGTCCATAC +
Preference number: 4 (lower is better)
Translates to: AFVFKGWAPAGSGSSLVAGKVCG*MAFSPY
Trigger: GTATGGACTAAAGGCCATGCACCCACAAACTTTGCC...TGCCACAAGGGAAGAACCACTTCCTGCTGGGGCCCAGCCTTTGAAGACAAAAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp TTCTGTAGTCCCTGTCATAGTACTGGATCTAGAGAGTGGAAACTTGGAATCAGGCGGGGACTGTGGGCTTaGGACTCCAGGGGAGACAGA +
Preference number: 4 (lower is better)
Translates to: FCSPCHSTGSREWKLGIRRGLWA*DSRGDR
Trigger: TCTGTCTCCCCTGGAGTCCCAAGCCCACAGTCCCCG...CCTGATTCCAAGTTTCCACTCTCTAGATCCAGTACTATGACAGGGACTACAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp CTGTTCAAGTTCTTCTATAGGCCCAAGAAGGGAATCATACCTTCTGTGAGTGCTGTGTACCGGGGACTGTaGGCTTGGGACTCCAGGGGA +
Preference number: 4 (lower is better)
Translates to: LFKFFYRPKKGIIPSVSAVYRGL*AWDSRG
Trigger: TCCCCTGGAGTCCCAAGCCCACAGTCCCCGGTACAC...AGCACTCACAGAAGGTATGATTCCCTTCTTGGGCCTATAGAAGAACTTGAACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp CCCTTTCCTTGTGGCTTGGTGATGGTCCATAGAAAATGTGAGTTGCATATAGTGGTGTACCGGGGACTGTaGGCTTGGGACTCCAGGGGA +
Preference number: 4 (lower is better)
Translates to: PFPCGLVMVHRKCELHIVVYRGL*AWDSRG
Trigger: TCCCCTGGAGTCCCAAGCCCACAGTCCCCGGTACAC...CACTATATGCAACTCACATTTTCTATGGACCATCACCAAGCCACAAGGAAAGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp GTGTTGGCTTTTGTCTTCAAAGGCTGGGCCCCAGCAGGAAGTGGTTCTTCCCTTGCTGGCCATGGACGGTaGTTTTTCCAGAGATTTCCA +
Preference number: 4 (lower is better)
Translates to: VLAFVFKGWAPAGSGSSLAGHGR*FFQRFP
Trigger: TGGAAATCTCTGGAAAAACCACCGTCCATGGCCAGC...AAGGGAAGAACCACTTCCTGCTGGGGCCCAGCCTTTGAAGACAAAAGCCAACAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp GCCCCAGCAGGAAGTGGTTCTTCCCTTGTGGCACGTCTCTCCCTAGTGGTGGCTCAATCATTGCTTTCTTaGTATTGGCAAGGTCAAGCT +
Preference number: 4 (lower is better)
Translates to: APAGSGSSLVARLSLVVAQSLLS*YWQGQA
Trigger: AGCTTGACCTTGCCAATACCAAGAAAGCAATGATTG...AGCCACCACTAGGGAGAGACGTGCCACAAGGGAAGAACCACTTCCTGCTGGGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR TCA 90 bp AGAGTAAAGAAAATGGGTCCAGTGTCTTCCATATGCACAATGAAGAGGTTCGTGGGTAGAGGGCCAGGCTaGTGGGTCCCTCCCAGTGTT +
Preference number: 4 (lower is better)
Translates to: RVKKMGPVSSICTMKRFVGRGPG*WVPPSV
Trigger: AACACTGGGAGGGACCCATCAGCCTGGCCCTCTACC...CACGAACCTCTTCATTGTGCATATGGAAGACACTGGACCCATTTTCTTTACTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR TCA 90 bp GTGTTGGCTTTTGTCTTCAAAGGCTGGGCCCCAGCAGGAAGTGGTTCTTCCCTTCGGGACATGTCTTGTTaGAACTCTTCCTTCAGGGTT +
Preference number: 4 (lower is better)
Translates to: VLAFVFKGWAPAGSGSSLRDMSC*NSSFRV
Trigger: AACCCTGAAGGAAGAGTTTCAACAAGACATGTCCCG...AAGGGAAGAACCACTTCCTGCTGGGGCCCAGCCTTTGAAGACAAAAGCCAACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR GCA 90 bp GTGTTGGCTTTTGTCTTCAAAGGCTGGGCCCCAGCAGGAAGTGGTTCTTCCCTTGTCAGTCTCCACATCTaGTCCCATTTCATCTTCCGA +
Preference number: 4 (lower is better)
Translates to: VLAFVFKGWAPAGSGSSLVSLHI*SHFIFR
Trigger: TCGGAAGATGAAATGGGAGCAGATGTGGAGACTGAC...AAGGGAAGAACCACTTCCTGCTGGGGCCCAGCCTTTGAAGACAAAAGCCAACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp CCATGGTGGGCTGGGTCTCTGTCCAAGACTTCAGAAGAGAGCAGCTTTGTGGGGGCATTGAAAATATCCTaGTCAGCCAAGGATGTAGAC +
Preference number: 4 (lower is better)
Translates to: PWWAGSLSKTSEESSFVGALKIS*SAKDVD
Trigger: GTCTACATCCTTGGCTGACCAGGATATTTTCAATGC...CCCCACAAAGCTGCTCTCTTCTGAAGTCTTGGACAGAGACCCAGCCCACCATGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp GCACCCATGGTGGGCTGGGTCTCTGTCCAAGACTTCAGAAGAGAGCAGCTTTGTTTGGGGGAGTTCCAGTaGATGACCTTTAAATCAGAC +
Preference number: 4 (lower is better)
Translates to: APMVGWVSVQDFRREQLCLGEFQ*MTFKSD
Trigger: GTCTGATTTAAAGGTCATCCACTGGAACTCCCCCAA...ACAAAGCTGCTCTCTTCTGAAGTCTTGGACAGAGACCCAGCCCACCATGGGTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR TCA 90 bp TGTAGTCCCTGTCATAGTACTGGATCTAGAGAGTGGAAACTTGGAATCAGGTGGCAGATTTCACCAGGGTaGCAACGTCCCTGCTGGCAT +
Preference number: 4 (lower is better)
Translates to: CSPCHSTGSREWKLGIRWQISPG*QRPCWH
Trigger: ATGCCAGCAGGGACGTTGTCACCCTGGTGAAATCTG...CCACCTGATTCCAAGTTTCCACTCTCTAGATCCAGTACTATGACAGGGACTACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR TCA 90 bp ACATGTCAACTCAATACAAACAGCCCAGTACAGGGTATGCCATTAGCTCTTGTTGGGTTCTGTGGACAGTaGAGCGCTCTCGCCGGAACT +
Preference number: 4 (lower is better)
Translates to: TCQLNTNSPVQGMPLALVGFCGQ*SALAGT
Trigger: AGTTCCGGCGAGAGCGCTTCACTGTCCACAGAACCC...AACAAGAGCTAATGGCATACCCTGTACTGGGCTGTTTGTATTGAGTTGACATGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR TCA 90 bp GCTTTTGTCTTCAAAGGCTGGGCCCCAGCAGGAAGTGGTTCTTCCCTTGTGGCATGTTGTTCTCAGCTGTaGGATATTTCAAGGCAGCAA +
Preference number: 4 (lower is better)
Translates to: AFVFKGWAPAGSGSSLVACCSQL*DISRQQ
Trigger: TTGCTGCCTTGAAATATCTCACAGCTGAGAACAACA...TGCCACAAGGGAAGAACCACTTCCTGCTGGGGCCCAGCCTTTGAAGACAAAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR GCA 90 bp GCTTTTGTCTTCAAAGGCTGGGCCCCAGCAGGAAGTGGTTCTTCCCTTGTGGCAGAACTCATACTCCTGTaGATCCAATTCCATGATGTG +
Preference number: 4 (lower is better)
Translates to: AFVFKGWAPAGSGSSLVAELILL*IQFHDV
Trigger: CACATCATGGAATTGGATGCACAGGAGTATGAGTTC...TGCCACAAGGGAAGAACCACTTCCTGCTGGGGCCCAGCCTTTGAAGACAAAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp CAACTCAATACAAACAGCCCAGTACAGGGTATGCCATTAGCTCTTGTTCTCATCCCTGGTAAGGTGTGGTaGCAGTCCGCCACTTGGCAA +
Preference number: 4 (lower is better)
Translates to: QLNTNSPVQGMPLALVLIPGKVW*QSATWQ
Trigger: TTGCCAAGTGGCGGACTGCCACCACACCTTACCAGG...GATGAGAACAAGAGCTAATGGCATACCCTGTACTGGGCTGTTTGTATTGAGTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR TCA 90 bp TGTCAACTCAATACAAACAGCCCAGTACAGGGTATGCCATTAGCTCTTGTTCTCCGGTGTCTAGGACAATaGCTCTCTCCAGGTTGGCAG +
Preference number: 4 (lower is better)
Translates to: CQLNTNSPVQGMPLALVLRCLGQ*LSPGWQ
Trigger: CTGCCAACCTGGAGAGAGTCATTGTCCTAGACACCG...GAGAACAAGAGCTAATGGCATACCCTGTACTGGGCTGTTTGTATTGAGTTGACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR GCA 90 bp GTGTTGGCTTTTGTCTTCAAAGGCTGGGCCCCAGCAGGAAGTGGTTCTTCCCTTAGACAGATGCGGTATTaGTTGTTGGAACGGAACTTA +
Preference number: 4 (lower is better)
Translates to: VLAFVFKGWAPAGSGSSLRQMRY*LLERNL
Trigger: TAAGTTCCGTTCCAACAAGCAATACCGCATCTGTCT...AAGGGAAGAACCACTTCCTGCTGGGGCCCAGCCTTTGAAGACAAAAGCCAACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp CTGTTCAAGTTCTTCTATAGGCCCAAGAAGGGAATCATACCTTCTGTGAGTGCTCCATGGAGTAGGTCTTaGAGTGGTTCCCACGGTGGT +
Preference number: 4 (lower is better)
Translates to: LFKFFYRPKKGIIPSVSAPWSRS*SGSHGG
Trigger: ACCACCGTGGGAACCACTCCAAGACCTACTCCATGG...AGCACTCACAGAAGGTATGATTCCCTTCTTGGGCCTATAGAAGAACTTGAACAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp CACATGTCAACTCAATACAAACAGCCCAGTACAGGGTATGCCATTAGCTCTTGTCCATGGAGTAGGTCTTaGAGTGGTTCCCACGGTGGT +
Preference number: 4 (lower is better)
Translates to: HMSTQYKQPSTGYAISSCPWSRS*SGSHGG
Trigger: ACCACCGTGGGAACCACTCCAAGACCTACTCCATGG...ACAAGAGCTAATGGCATACCCTGTACTGGGCTGTTTGTATTGAGTTGACATGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp CACATGTCAACTCAATACAAACAGCCCAGTACAGGGTATGCCATTAGCTCTTGTCTGTCCCCTCCTCCATaGAGTAGGTCTTGGAGTGGT +
Preference number: 4 (lower is better)
Translates to: HMSTQYKQPSTGYAISSCLSPPP*SRSWSG
Trigger: ACCACTCCAAGACCTACTCCATGGAGGAGGGGACAG...ACAAGAGCTAATGGCATACCCTGTACTGGGCTGTTTGTATTGAGTTGACATGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp TGTCAACTCAATACAAACAGCCCAGTACAGGGTATGCCATTAGCTCTTGTTCTCTGCTCAGAGCGGGTGTaGTCTGACAGCTGCACATTC +
Preference number: 4 (lower is better)
Translates to: CQLNTNSPVQGMPLALVLCSERV*SDSCTF
Trigger: GAATGTGCAGCTGTCAGACCACACCCGCTCTGAGCA...GAGAACAAGAGCTAATGGCATACCCTGTACTGGGCTGTTTGTATTGAGTTGACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp TGTCAACTCAATACAAACAGCCCAGTACAGGGTATGCCATTAGCTCTTGTTCTCTACAGGTGGGTTCTGTaGACAGTGAAGCGCTCTCGC +
Preference number: 4 (lower is better)
Translates to: CQLNTNSPVQGMPLALVLYRWVL*TVKRSR
Trigger: GCGAGAGCGCTTCACTGTCCACAGAACCCACCTGTA...GAGAACAAGAGCTAATGGCATACCCTGTACTGGGCTGTTTGTATTGAGTTGACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp GCTTTTGTCTTCAAAGGCTGGGCCCCAGCAGGAAGTGGTTCTTCCCTTGTGGCACAATCATTGCTTTCTTaGTATTGGCAAGGTCAAGCT +
Preference number: 4 (lower is better)
Translates to: AFVFKGWAPAGSGSSLVAQSLLS*YWQGQA
Trigger: AGCTTGACCTTGCCAATACCAAGAAAGCAATGATTG...TGCCACAAGGGAAGAACCACTTCCTGCTGGGGCCCAGCCTTTGAAGACAAAAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp CCTTGTGGCTTGGTGATGGTCCATAGAAAATGTGAGTTGCATATAGTGTTTGGACAACCTGGTAAGGTGTaGTGGCAGTCCGCCACTTGG +
Preference number: 4 (lower is better)
Translates to: PCGLVMVHRKCELHIVFGQPGKV*WQSATW
Trigger: CCAAGTGGCGGACTGCCACCACACCTTACCAGGTTG...TCCAAACACTATATGCAACTCACATTTTCTATGGACCATCACCAAGCCACAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp TTCTTCTATAGGCCCAAGAAGGGAATCATACCTTCTGTGAGTGCTGAAGTAGTTCAACCTGGTAAGGTGTaGTGGCAGTCCGCCACTTGG +
Preference number: 4 (lower is better)
Translates to: FFYRPKKGIIPSVSAEVVQPGKV*WQSATW
Trigger: CCAAGTGGCGGACTGCCACCACACCTTACCAGGTTG...AACTACTTCAGCACTCACAGAAGGTATGATTCCCTTCTTGGGCCTATAGAAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR TCA 90 bp CTGTTCAAGTTCTTCTATAGGCCCAAGAAGGGAATCATACCTTCTGTGAGTGCTCTGTCCATGGAGAGCTaGGCAACAAGGGTAACGTCT +
Preference number: 4 (lower is better)
Translates to: LFKFFYRPKKGIIPSVSALSMES*ATRVTS
Trigger: AGACGTTACCCTTGTTGCTCAGCTCTCCATGGACAG...AGCACTCACAGAAGGTATGATTCCCTTCTTGGGCCTATAGAAGAACTTGAACAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR TCA 90 bp TGTAGTCCCTGTCATAGTACTGGATCTAGAGAGTGGAAACTTGGAATCAGGTGGCAGCAGCTCTGCTTTTaGCTTGGGGAAAGAGAGTCT +
Preference number: 4 (lower is better)
Translates to: CSPCHSTGSREWKLGIRWQQLCF*LGERES
Trigger: AGACTCTCTTTCCCCAAGTCAAAAGCAGAGCTGCTG...CCACCTGATTCCAAGTTTCCACTCTCTAGATCCAGTACTATGACAGGGACTACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR GCA 90 bp ATAGTACTGGATCTAGAGAGTGGAAACTTGGAATCAGGTGGTCTCAGTGTTCATCTCAGAGCTGTTACCTaGCACAATGCCAGCTCGCAG +
Preference number: 4 (lower is better)
Translates to: IVLDLESGNLESGGLSVHLRAVT*HNASSQ
Trigger: CTGCGAGCTGGCATTGTGGCAGGTAACAGCTCTGAG...ATGAACACTGAGACCACCTGATTCCAAGTTTCCACTCTCTAGATCCAGTACTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR GCA 90 bp TTCTTCTATAGGCCCAAGAAGGGAATCATACCTTCTGTGAGTGCTGAAGTAGTTCTCAGAGCTGTTACCTaGCACAATGCCAGCTCGCAG +
Preference number: 4 (lower is better)
Translates to: FFYRPKKGIIPSVSAEVVLRAVT*HNASSQ
Trigger: CTGCGAGCTGGCATTGTGGCAGGTAACAGCTCTGAG...AACTACTTCAGCACTCACAGAAGGTATGATTCCCTTCTTGGGCCTATAGAAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR GCA 90 bp CCTTGTGGCTTGGTGATGGTCCATAGAAAATGTGAGTTGCATATAGTGTTTGGATTTTCCACAGCTGGCTaGTGCCCACACTCAGAGCTG +
Preference number: 4 (lower is better)
Translates to: PCGLVMVHRKCELHIVFGFSTAG*CPHSEL
Trigger: CAGCTCTGAGTGTGGGCAGCAGCCAGCTGTGGAAAA...TCCAAACACTATATGCAACTCACATTTTCTATGGACCATCACCAAGCCACAAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp TTCTGTAGTCCCTGTCATAGTACTGGATCTAGAGAGTGGAAACTTGGAATCAGGACACTTTTCCACAGCTaGCTGCTGCCCACACTCAGA +
Preference number: 4 (lower is better)
Translates to: FCSPCHSTGSREWKLGIRTLFHS*LLPTLR
Trigger: TCTGAGTGTGGGCAGCAGCCAGCTGTGGAAAAGTGT...CCTGATTCCAAGTTTCCACTCTCTAGATCCAGTACTATGACAGGGACTACAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp ACATGTCAACTCAATACAAACAGCCCAGTACAGGGTATGCCATTAGCTCTTGTTTACAGGTGGGTTCTGTaGACAGTGAAGCGCTCTCGC +
Preference number: 4 (lower is better)
Translates to: TCQLNTNSPVQGMPLALVYRWVL*TVKRSR
Trigger: GCGAGAGCGCTTCACTGTCCACAGAACCCACCTGTA...AACAAGAGCTAATGGCATACCCTGTACTGGGCTGTTTGTATTGAGTTGACATGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp TGTAGTCCCTGTCATAGTACTGGATCTAGAGAGTGGAAACTTGGAATCAGGTGGTGCAGGAAGTACAGGTaGGTTCTGTGGACAGTGAAG +
Preference number: 4 (lower is better)
Translates to: CSPCHSTGSREWKLGIRWCRKYR*VLWTVK
Trigger: CTTCACTGTCCACAGAACCCACCTGTACTTCCTGCA...CCACCTGATTCCAAGTTTCCACTCTCTAGATCCAGTACTATGACAGGGACTACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp CAACTCAATACAAACAGCCCAGTACAGGGTATGCCATTAGCTCTTGTTCTCATCTGGCAGTCCGCCACTTaGCAAAGTTTGTGGGTGCAT +
Preference number: 4 (lower is better)
Translates to: QLNTNSPVQGMPLALVLIWQSAT*QSLWVH
Trigger: ATGCACCCACAAACTTTGCCAAGTGGCGGACTGCCA...GATGAGAACAAGAGCTAATGGCATACCCTGTACTGGGCTGTTTGTATTGAGTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR TCA 90 bp CAACTCAATACAAACAGCCCAGTACAGGGTATGCCATTAGCTCTTGTTCTCATCAGAGGGTTCCGCCTATaGAAGAGGACAGATTTCACC +
Preference number: 4 (lower is better)
Translates to: QLNTNSPVQGMPLALVLIRGFRL*KRTDFT
Trigger: GGTGAAATCTGTCCTCTTTCATAGGCGGAACCCTCT...GATGAGAACAAGAGCTAATGGCATACCCTGTACTGGGCTGTTTGTATTGAGTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR TCA 90 bp CAACTCAATACAAACAGCCCAGTACAGGGTATGCCATTAGCTCTTGTTCTCATCCAGCAGCTCTGCTTTTaGCTTGGGGAAAGAGAGTCT +
Preference number: 4 (lower is better)
Translates to: QLNTNSPVQGMPLALVLIQQLCF*LGERES
Trigger: AGACTCTCTTTCCCCAAGTCAAAAGCAGAGCTGCTG...GATGAGAACAAGAGCTAATGGCATACCCTGTACTGGGCTGTTTGTATTGAGTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR TCA 90 bp TGTAGTCCCTGTCATAGTACTGGATCTAGAGAGTGGAAACTTGGAATCAGGTGGCTTCCTTCAGGGTTTTaGGACAGATGCGGTATTGCT +
Preference number: 4 (lower is better)
Translates to: CSPCHSTGSREWKLGIRWLPSGF*DRCGIA
Trigger: AGCAATACCGCATCTGTCTCAAAACCCTGAAGGAAG...CCACCTGATTCCAAGTTTCCACTCTCTAGATCCAGTACTATGACAGGGACTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR GCA 90 bp CCCTTTCCTTGTGGCTTGGTGATGGTCCATAGAAAATGTGAGTTGCATATAGTGTGTTACCTGCCACAATaGCAGCTCGCAGATTCTCAC +
Preference number: 4 (lower is better)
Translates to: PFPCGLVMVHRKCELHIVCYLPQ*QLADSH
Trigger: GTGAGAATCTGCGAGCTGGCATTGTGGCAGGTAACA...CACTATATGCAACTCACATTTTCTATGGACCATCACCAAGCCACAAGGAAAGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR GCA 90 bp TGTAGTCCCTGTCATAGTACTGGATCTAGAGAGTGGAAACTTGGAATCAGGTGGCTCTGCAATGTCTGTTaGAAAGGTGATGTCGGTGTC +
Preference number: 4 (lower is better)
Translates to: CSPCHSTGSREWKLGIRWLCNVC*KGDVGV
Trigger: GACACCGACATCACCTTTGCAACAGACATTGCAGAG...CCACCTGATTCCAAGTTTCCACTCTCTAGATCCAGTACTATGACAGGGACTACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR GCA 90 bp ACATGTCAACTCAATACAAACAGCCCAGTACAGGGTATGCCATTAGCTCTTGTTCACGGCCCACAGCTCTaGAATGTCTGTTGCAAAGGT +
Preference number: 4 (lower is better)
Translates to: TCQLNTNSPVQGMPLALVHGPQL*NVCCKG
Trigger: ACCTTTGCAACAGACATTGCAGAGCTGTGGGCCGTG...AACAAGAGCTAATGGCATACCCTGTACTGGGCTGTTTGTATTGAGTTGACATGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp CCTTGTGGCTTGGTGATGGTCCATAGAAAATGTGAGTTGCATATAGTGTTTGGAACACTTTTCCACAGCTaGCTGCTGCCCACACTCAGA +
Preference number: 4 (lower is better)
Translates to: PCGLVMVHRKCELHIVFGTLFHS*LLPTLR
Trigger: TCTGAGTGTGGGCAGCAGCCAGCTGTGGAAAAGTGT...TCCAAACACTATATGCAACTCACATTTTCTATGGACCATCACCAAGCCACAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp TGTCAACTCAATACAAACAGCCCAGTACAGGGTATGCCATTAGCTCTTGTTCTCCGATGGCCACATGGATaGTCTCACACTTTTCCACAG +
Preference number: 4 (lower is better)
Translates to: CQLNTNSPVQGMPLALVLRWPHG*SHTFPQ
Trigger: CTGTGGAAAAGTGTGAGACCATCCATGTGGCCATCG...GAGAACAAGAGCTAATGGCATACCCTGTACTGGGCTGTTTGTATTGAGTTGACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp ATAGTACTGGATCTAGAGAGTGGAAACTTGGAATCAGGTGGTCTCAGTGTTCATGAATCAGCAATGAGGTaGAAGTGCAGAGGGTTCCGC +
Preference number: 4 (lower is better)
Translates to: IVLDLESGNLESGGLSVHESAMR*KCRGFR
Trigger: GCGGAACCCTCTGCACTTCCACCTCATTGCTGATTC...ATGAACACTGAGACCACCTGATTCCAAGTTTCCACTCTCTAGATCCAGTACTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp ACATGTCAACTCAATACAAACAGCCCAGTACAGGGTATGCCATTAGCTCTTGTTGAATCAGCAATGAGGTaGAAGTGCAGAGGGTTCCGC +
Preference number: 4 (lower is better)
Translates to: TCQLNTNSPVQGMPLALVESAMR*KCRGFR
Trigger: GCGGAACCCTCTGCACTTCCACCTCATTGCTGATTC...AACAAGAGCTAATGGCATACCCTGTACTGGGCTGTTTGTATTGAGTTGACATGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp ATAGTACTGGATCTAGAGAGTGGAAACTTGGAATCAGGTGGTCTCAGTGTTCATGGTACCATCCAGGTCTaGAAGAGTGTAGCCAGGATC +
Preference number: 4 (lower is better)
Translates to: IVLDLESGNLESGGLSVHGTIQV*KSVARI
Trigger: GATCCTGGCTACACTCTTCCAGACCTGGATGGTACC...ATGAACACTGAGACCACCTGATTCCAAGTTTCCACTCTCTAGATCCAGTACTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp CCTTGTGGCTTGGTGATGGTCCATAGAAAATGTGAGTTGCATATAGTGTTTGGAGGTACCATCCAGGTCTaGAAGAGTGTAGCCAGGATC +
Preference number: 4 (lower is better)
Translates to: PCGLVMVHRKCELHIVFGGTIQV*KSVARI
Trigger: GATCCTGGCTACACTCTTCCAGACCTGGATGGTACC...TCCAAACACTATATGCAACTCACATTTTCTATGGACCATCACCAAGCCACAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp TTCTGTAGTCCCTGTCATAGTACTGGATCTAGAGAGTGGAAACTTGGAATCAGGTGCCCTTTGAACTTATaGAACACGGCCCACAGCTCT +
Preference number: 4 (lower is better)
Translates to: FCSPCHSTGSREWKLGIRCPLNL*NTAHSS
Trigger: AGAGCTGTGGGCCGTGTTCCATAAGTTCAAAGGGCA...CCTGATTCCAAGTTTCCACTCTCTAGATCCAGTACTATGACAGGGACTACAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp CTGTTCAAGTTCTTCTATAGGCCCAAGAAGGGAATCATACCTTCTGTGAGTGCTTGCCCTTTGAACTTATaGAACACGGCCCACAGCTCT +
Preference number: 4 (lower is better)
Translates to: LFKFFYRPKKGIIPSVSACPLNL*NTAHSS
Trigger: AGAGCTGTGGGCCGTGTTCCATAAGTTCAAAGGGCA...AGCACTCACAGAAGGTATGATTCCCTTCTTGGGCCTATAGAAGAACTTGAACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp CCCTTTCCTTGTGGCTTGGTGATGGTCCATAGAAAATGTGAGTTGCATATAGTGGCTGGCCATGGACGGTaGTTTTTCCAGAGATTTCCA +
Preference number: 4 (lower is better)
Translates to: PFPCGLVMVHRKCELHIVAGHGR*FFQRFP
Trigger: TGGAAATCTCTGGAAAAACCACCGTCCATGGCCAGC...CACTATATGCAACTCACATTTTCTATGGACCATCACCAAGCCACAAGGAAAGGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp CTGTTCAAGTTCTTCTATAGGCCCAAGAAGGGAATCATACCTTCTGTGAGTGCTTGCAGGAAGTACAGGTaGGTTCTGTGGACAGTGAAG +
Preference number: 4 (lower is better)
Translates to: LFKFFYRPKKGIIPSVSACRKYR*VLWTVK
Trigger: CTTCACTGTCCACAGAACCCACCTGTACTTCCTGCA...AGCACTCACAGAAGGTATGATTCCCTTCTTGGGCCTATAGAAGAACTTGAACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp CAACTCAATACAAACAGCCCAGTACAGGGTATGCCATTAGCTCTTGTTCTCATCCCCAGTGTTTACAGATaGCCTCCAGCATCTGTAGTC +
Preference number: 4 (lower is better)
Translates to: QLNTNSPVQGMPLALVLIPSVYR*PPASVV
Trigger: GACTACAGATGCTGGAGGCCATCTGTAAACACTGGG...GATGAGAACAAGAGCTAATGGCATACCCTGTACTGGGCTGTTTGTATTGAGTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp ACATGTCAACTCAATACAAACAGCCCAGTACAGGGTATGCCATTAGCTCTTGTTTGGCAGTCCGCCACTTaGCAAAGTTTGTGGGTGCAT +
Preference number: 4 (lower is better)
Translates to: TCQLNTNSPVQGMPLALVWQSAT*QSLWVH
Trigger: ATGCACCCACAAACTTTGCCAAGTGGCGGACTGCCA...AACAAGAGCTAATGGCATACCCTGTACTGGGCTGTTTGTATTGAGTTGACATGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp ATAGTGAAGAGTAAAGAAAATGGGTCCAGTGTCTTCCATATGCACAATGAAGAGCAACCTGGTAAGGTGTaGTGGCAGTCCGCCACTTGG +
Preference number: 4 (lower is better)
Translates to: IVKSKENGSSVFHMHNEEQPGKV*WQSATW
Trigger: CCAAGTGGCGGACTGCCACCACACCTTACCAGGTTG...CTCTTCATTGTGCATATGGAAGACACTGGACCCATTTTCTTTACTCTTCACTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR TCA 90 bp TGTAGTCCCTGTCATAGTACTGGATCTAGAGAGTGGAAACTTGGAATCAGGTGGACAAGTAAATCCAGGTaGTGGCTGGTATGCAGAGTA +
Preference number: 4 (lower is better)
Translates to: CSPCHSTGSREWKLGIRWTSKSR*WLVCRV
Trigger: TACTCTGCATACCAGCCATCACCTGGATTTACTTGT...CCACCTGATTCCAAGTTTCCACTCTCTAGATCCAGTACTATGACAGGGACTACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR TCA 90 bp ATAGTACTGGATCTAGAGAGTGGAAACTTGGAATCAGGTGGTCTCAGTGTTCATAGAGGGTTCCGCCTATaGAAGAGGACAGATTTCACC +
Preference number: 4 (lower is better)
Translates to: IVLDLESGNLESGGLSVHRGFRL*KRTDFT
Trigger: GGTGAAATCTGTCCTCTTTCATAGGCGGAACCCTCT...ATGAACACTGAGACCACCTGATTCCAAGTTTCCACTCTCTAGATCCAGTACTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR TCA 90 bp ACATGTCAACTCAATACAAACAGCCCAGTACAGGGTATGCCATTAGCTCTTGTTAGAGGGTTCCGCCTATaGAAGAGGACAGATTTCACC +
Preference number: 4 (lower is better)
Translates to: TCQLNTNSPVQGMPLALVRGFRL*KRTDFT
Trigger: GGTGAAATCTGTCCTCTTTCATAGGCGGAACCCTCT...AACAAGAGCTAATGGCATACCCTGTACTGGGCTGTTTGTATTGAGTTGACATGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR TCA 90 bp ATAGTGAAGAGTAAAGAAAATGGGTCCAGTGTCTTCCATATGCACAATGAAGAGCGGTGTCTAGGACAATaGCTCTCTCCAGGTTGGCAG +
Preference number: 4 (lower is better)
Translates to: IVKSKENGSSVFHMHNEERCLGQ*LSPGWQ
Trigger: CTGCCAACCTGGAGAGAGTCATTGTCCTAGACACCG...CTCTTCATTGTGCATATGGAAGACACTGGACCCATTTTCTTTACTCTTCACTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR TCA 90 bp AGTGTTTGGACTCATATTTCTGTAGTCCCTGTCATAGTACTGGATCTAGAGAGTCTGTCCATGGAGAGCTaGGCAACAAGGGTAACGTCT +
Preference number: 4 (lower is better)
Translates to: SVWTHISVVPVIVLDLESLSMES*ATRVTS
Trigger: AGACGTTACCCTTGTTGCTCAGCTCTCCATGGACAG...ACTCTCTAGATCCAGTACTATGACAGGGACTACAGAAATATGAGTCCAAACACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR TCA 90 bp TTCTGTAGTCCCTGTCATAGTACTGGATCTAGAGAGTGGAAACTTGGAATCAGGCTTCCTTCAGGGTTTTaGGACAGATGCGGTATTGCT +
Preference number: 4 (lower is better)
Translates to: FCSPCHSTGSREWKLGIRLPSGF*DRCGIA
Trigger: AGCAATACCGCATCTGTCTCAAAACCCTGAAGGAAG...CCTGATTCCAAGTTTCCACTCTCTAGATCCAGTACTATGACAGGGACTACAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR GCA 90 bp ATAGTGAAGAGTAAAGAAAATGGGTCCAGTGTCTTCCATATGCACAATGAAGAGTTTTCCACAGCTGGCTaGTGCCCACACTCAGAGCTG +
Preference number: 4 (lower is better)
Translates to: IVKSKENGSSVFHMHNEEFSTAG*CPHSEL
Trigger: CAGCTCTGAGTGTGGGCAGCAGCCAGCTGTGGAAAA...CTCTTCATTGTGCATATGGAAGACACTGGACCCATTTTCTTTACTCTTCACTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR GCA 90 bp CACATGTCAACTCAATACAAACAGCCCAGTACAGGGTATGCCATTAGCTCTTGTCTCTGCAATGTCTGTTaGAAAGGTGATGTCGGTGTC +
Preference number: 4 (lower is better)
Translates to: HMSTQYKQPSTGYAISSCLCNVC*KGDVGV
Trigger: GACACCGACATCACCTTTGCAACAGACATTGCAGAG...ACAAGAGCTAATGGCATACCCTGTACTGGGCTGTTTGTATTGAGTTGACATGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR GCA 90 bp ACATGTCAACTCAATACAAACAGCCCAGTACAGGGTATGCCATTAGCTCTTGTTCATGAGTTCCCTCTCTaGTGTCAGTCTCCACATCTG +
Preference number: 4 (lower is better)
Translates to: TCQLNTNSPVQGMPLALVHEFPL*CQSPHL
Trigger: CAGATGTGGAGACTGACAGCAGAGAGGGAACTCATG...AACAAGAGCTAATGGCATACCCTGTACTGGGCTGTTTGTATTGAGTTGACATGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR GCA 90 bp TTCTTCTATAGGCCCAAGAAGGGAATCATACCTTCTGTGAGTGCTGAAGTAGTTCATGAGTTCCCTCTCTaGTGTCAGTCTCCACATCTG +
Preference number: 4 (lower is better)
Translates to: FFYRPKKGIIPSVSAEVVHEFPL*CQSPHL
Trigger: CAGATGTGGAGACTGACAGCAGAGAGGGAACTCATG...AACTACTTCAGCACTCACAGAAGGTATGATTCCCTTCTTGGGCCTATAGAAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR GCA 90 bp CCCTTTCCTTGTGGCTTGGTGATGGTCCATAGAAAATGTGAGTTGCATATAGTGGGCAAAGTTTGTGGGTaGATGGCCTTTAGTCCATAC +
Preference number: 4 (lower is better)
Translates to: PFPCGLVMVHRKCELHIVGKVCG*MAFSPY
Trigger: GTATGGACTAAAGGCCATGCACCCACAAACTTTGCC...CACTATATGCAACTCACATTTTCTATGGACCATCACCAAGCCACAAGGAAAGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp TTCTGTAGTCCCTGTCATAGTACTGGATCTAGAGAGTGGAAACTTGGAATCAGGTGGCAGGCAGAGTTTTaGTCAGAACCAGCTTCATCA +
Preference number: 4 (lower is better)
Translates to: FCSPCHSTGSREWKLGIRWQAEF*SEPASS
Trigger: TGATGAAGCTGGTTCTGACCAAAACTCTGCCTGCCA...CCTGATTCCAAGTTTCCACTCTCTAGATCCAGTACTATGACAGGGACTACAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp TTCTTCTATAGGCCCAAGAAGGGAATCATACCTTCTGTGAGTGCTGAAGTAGTTAGATACCAGTCACTCTaGTTCTCTACCAAGCCCAGG +
Preference number: 4 (lower is better)
Translates to: FFYRPKKGIIPSVSAEVVRYQSL*FSTKPR
Trigger: CCTGGGCTTGGTAGAGAACCAGAGTGACTGGTATCT...AACTACTTCAGCACTCACAGAAGGTATGATTCCCTTCTTGGGCCTATAGAAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp ACATGTCAACTCAATACAAACAGCCCAGTACAGGGTATGCCATTAGCTCTTGTTGCTGGCCATGGACGGTaGTTTTTCCAGAGATTTCCA +
Preference number: 4 (lower is better)
Translates to: TCQLNTNSPVQGMPLALVAGHGR*FFQRFP
Trigger: TGGAAATCTCTGGAAAAACCACCGTCCATGGCCAGC...AACAAGAGCTAATGGCATACCCTGTACTGGGCTGTTTGTATTGAGTTGACATGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp TTCTTCTATAGGCCCAAGAAGGGAATCATACCTTCTGTGAGTGCTGAAGTAGTTCCCAGTGTTTACAGATaGCCTCCAGCATCTGTAGTC +
Preference number: 4 (lower is better)
Translates to: FFYRPKKGIIPSVSAEVVPSVYR*PPASVV
Trigger: GACTACAGATGCTGGAGGCCATCTGTAAACACTGGG...AACTACTTCAGCACTCACAGAAGGTATGATTCCCTTCTTGGGCCTATAGAAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp CCCTTTCCTTGTGGCTTGGTGATGGTCCATAGAAAATGTGAGTTGCATATAGTGGCTCTGCTTTTGACTTaGGGAAAGAGAGTCTGTAGC +
Preference number: 4 (lower is better)
Translates to: PFPCGLVMVHRKCELHIVALLLT*GKRVCS
Trigger: GCTACAGACTCTCTTTCCCCAAGTCAAAAGCAGAGC...CACTATATGCAACTCACATTTTCTATGGACCATCACCAAGCCACAAGGAAAGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp CAACTCAATACAAACAGCCCAGTACAGGGTATGCCATTAGCTCTTGTTCTCATCGCTCTGCTTTTGACTTaGGGAAAGAGAGTCTGTAGC +
Preference number: 4 (lower is better)
Translates to: QLNTNSPVQGMPLALVLIALLLT*GKRVCS
Trigger: GCTACAGACTCTCTTTCCCCAAGTCAAAAGCAGAGC...GATGAGAACAAGAGCTAATGGCATACCCTGTACTGGGCTGTTTGTATTGAGTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR CAA 72 bp CTCATGTGTAATGTCCATATGAGAGTCTCCAGATGTTaGTTTGGGTCCTTGGGTTGCTGTCCATATGGGTAC +
Preference number: 4 (lower is better)
Translates to: LMCNVHMRVSRC*FGSLGCCPYGY
Trigger: GTACCCATATGGACAGCAACCCAAGGACCCAAACAAACATCTGGAGACTCTCATATGGACATTACACATGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
3UTR CAA 72 bp GTCCCTGTCATAGTACTGGATCTAGAGAGTGGAAACTaGGAATCAGGTGGTCTCAGTGTTCATCATGAAGGA +
Preference number: 4 (lower is better)
Translates to: VPVIVLDLESGN*ESGGLSVHHEG
Trigger: TCCTTCATGATGAACACTGAGACCACCTGATTCCAAGTTTCCACTCTCTAGATCCAGTACTATGACAGGGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR GCA 90 bp TTCTTCTATAGGCCCAAGAAGGGAATCATACCTTCTGTGAGTGCTGAAGTAGTTGTCAGTCTCCACATCTaGTCCCATTTCATCTTCCGA +
Preference number: 4 (lower is better)
Translates to: FFYRPKKGIIPSVSAEVVVSLHI*SHFIFR
Trigger: TCGGAAGATGAAATGGGAGCAGATGTGGAGACTGAC...AACTACTTCAGCACTCACAGAAGGTATGATTCCCTTCTTGGGCCTATAGAAGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp TTCTTCTATAGGCCCAAGAAGGGAATCATACCTTCTGTGAGTGCTGAAGTAGTTTGGCAGGCAGAGTTTTaGTCAGAACCAGCTTCATCA +
Preference number: 4 (lower is better)
Translates to: FFYRPKKGIIPSVSAEVVWQAEF*SEPASS
Trigger: TGATGAAGCTGGTTCTGACCAAAACTCTGCCTGCCA...AACTACTTCAGCACTCACAGAAGGTATGATTCCCTTCTTGGGCCTATAGAAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp AGTGTTTGGACTCATATTTCTGTAGTCCCTGTCATAGTACTGGATCTAGAGAGTTGCAGGAAGTACAGGTaGGTTCTGTGGACAGTGAAG +
Preference number: 4 (lower is better)
Translates to: SVWTHISVVPVIVLDLESCRKYR*VLWTVK
Trigger: CTTCACTGTCCACAGAACCCACCTGTACTTCCTGCA...ACTCTCTAGATCCAGTACTATGACAGGGACTACAGAAATATGAGTCCAAACACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp TTCTTCTATAGGCCCAAGAAGGGAATCATACCTTCTGTGAGTGCTGAAGTAGTTTTGGCAAGGTCAAGCTaGATGACAGATTTCCTGAGG +
Preference number: 4 (lower is better)
Translates to: FFYRPKKGIIPSVSAEVVLARSS*MTDFLR
Trigger: CCTCAGGAAATCTGTCATCCAGCTTGACCTTGCCAA...AACTACTTCAGCACTCACAGAAGGTATGATTCCCTTCTTGGGCCTATAGAAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp TGTAGTCCCTGTCATAGTACTGGATCTAGAGAGTGGAAACTTGGAATCAGGTGGTCTCACAACAACATATaGCTCAAAATCAGCCTCCCA +
Preference number: 4 (lower is better)
Translates to: CSPCHSTGSREWKLGIRWSHNNI*LKISLP
Trigger: TGGGAGGCTGATTTTGAGCCATATGTTGTTGTGAGA...CCACCTGATTCCAAGTTTCCACTCTCTAGATCCAGTACTATGACAGGGACTACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR TCA 90 bp ACATGTCAACTCAATACAAACAGCCCAGTACAGGGTATGCCATTAGCTCTTGTTACAAGTAAATCCAGGTaGTGGCTGGTATGCAGAGTA +
Preference number: 4 (lower is better)
Translates to: TCQLNTNSPVQGMPLALVTSKSR*WLVCRV
Trigger: TACTCTGCATACCAGCCATCACCTGGATTTACTTGT...AACAAGAGCTAATGGCATACCCTGTACTGGGCTGTTTGTATTGAGTTGACATGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR GCA 90 bp ATAGTGAAGAGTAAAGAAAATGGGTCCAGTGTCTTCCATATGCACAATGAAGAGTGTTACCTGCCACAATaGCAGCTCGCAGATTCTCAC +
Preference number: 4 (lower is better)
Translates to: IVKSKENGSSVFHMHNEECYLPQ*QLADSH
Trigger: GTGAGAATCTGCGAGCTGGCATTGTGGCAGGTAACA...CTCTTCATTGTGCATATGGAAGACACTGGACCCATTTTCTTTACTCTTCACTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR GCA 90 bp AGTGTTTGGACTCATATTTCTGTAGTCCCTGTCATAGTACTGGATCTAGAGAGTGTCAGTCTCCACATCTaGTCCCATTTCATCTTCCGA +
Preference number: 4 (lower is better)
Translates to: SVWTHISVVPVIVLDLESVSLHI*SHFIFR
Trigger: TCGGAAGATGAAATGGGAGCAGATGTGGAGACTGAC...ACTCTCTAGATCCAGTACTATGACAGGGACTACAGAAATATGAGTCCAAACACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR GCA 90 bp CCCTTTCCTTGTGGCTTGGTGATGGTCCATAGAAAATGTGAGTTGCATATAGTGAGACAGATGCGGTATTaGTTGTTGGAACGGAACTTA +
Preference number: 4 (lower is better)
Translates to: PFPCGLVMVHRKCELHIVRQMRY*LLERNL
Trigger: TAAGTTCCGTTCCAACAAGCAATACCGCATCTGTCT...CACTATATGCAACTCACATTTTCTATGGACCATCACCAAGCCACAAGGAAAGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp ACTCAAAACAAAACAAGAGTGACTTTGAGAATAAACAACCAATTCATCCCTCCTCTGTCCCCTCCTCCATaGAGTAGGTCTTGGAGTGGT +
Preference number: 4 (lower is better)
Translates to: TQNKTRVTLRINNQFIPPLSPPP*SRSWSG
Trigger: ACCACTCCAAGACCTACTCCATGGAGGAGGGGACAG...AGGAGGGATGAATTGGTTGTTTATTCTCAAAGTCACTCTTGTTTTGTTTTGAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp AGTGTTTGGACTCATATTTCTGTAGTCCCTGTCATAGTACTGGATCTAGAGAGTTGGCAGGCAGAGTTTTaGTCAGAACCAGCTTCATCA +
Preference number: 4 (lower is better)
Translates to: SVWTHISVVPVIVLDLESWQAEF*SEPASS
Trigger: TGATGAAGCTGGTTCTGACCAAAACTCTGCCTGCCA...ACTCTCTAGATCCAGTACTATGACAGGGACTACAGAAATATGAGTCCAAACACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp CCCTTTCCTTGTGGCTTGGTGATGGTCCATAGAAAATGTGAGTTGCATATAGTGGCATTGAAAATATCCTaGTCAGCCAAGGATGTAGAC +
Preference number: 4 (lower is better)
Translates to: PFPCGLVMVHRKCELHIVALKIS*SAKDVD
Trigger: GTCTACATCCTTGGCTGACCAGGATATTTTCAATGC...CACTATATGCAACTCACATTTTCTATGGACCATCACCAAGCCACAAGGAAAGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp ACTCAAAACAAAACAAGAGTGACTTTGAGAATAAACAACCAATTCATCCCTCCTTGCTCAGAGCGGGTGTaGTCTGACAGCTGCACATTC +
Preference number: 4 (lower is better)
Translates to: TQNKTRVTLRINNQFIPPCSERV*SDSCTF
Trigger: GAATGTGCAGCTGTCAGACCACACCCGCTCTGAGCA...AGGAGGGATGAATTGGTTGTTTATTCTCAAAGTCACTCTTGTTTTGTTTTGAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp CCTTGTGGCTTGGTGATGGTCCATAGAAAATGTGAGTTGCATATAGTGTTTGGATTGGGGGAGTTCCAGTaGATGACCTTTAAATCAGAC +
Preference number: 4 (lower is better)
Translates to: PCGLVMVHRKCELHIVFGLGEFQ*MTFKSD
Trigger: GTCTGATTTAAAGGTCATCCACTGGAACTCCCCCAA...TCCAAACACTATATGCAACTCACATTTTCTATGGACCATCACCAAGCCACAAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp ATAGTACTGGATCTAGAGAGTGGAAACTTGGAATCAGGTGGTCTCAGTGTTCATTTGGGGGAGTTCCAGTaGATGACCTTTAAATCAGAC +
Preference number: 4 (lower is better)
Translates to: IVLDLESGNLESGGLSVHLGEFQ*MTFKSD
Trigger: GTCTGATTTAAAGGTCATCCACTGGAACTCCCCCAA...ATGAACACTGAGACCACCTGATTCCAAGTTTCCACTCTCTAGATCCAGTACTAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp CACATGTCAACTCAATACAAACAGCCCAGTACAGGGTATGCCATTAGCTCTTGTTCTCACAACAACATATaGCTCAAAATCAGCCTCCCA +
Preference number: 4 (lower is better)
Translates to: HMSTQYKQPSTGYAISSCSHNNI*LKISLP
Trigger: TGGGAGGCTGATTTTGAGCCATATGTTGTTGTGAGA...ACAAGAGCTAATGGCATACCCTGTACTGGGCTGTTTGTATTGAGTTGACATGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR TCA 90 bp CTGTTCAAGTTCTTCTATAGGCCCAAGAAGGGAATCATACCTTCTGTGAGTGCTTCAGACAGCTGCTTCTaGAGATTTTCATTGTTGACA +
Preference number: 4 (lower is better)
Translates to: LFKFFYRPKKGIIPSVSASDSCF*RFSLLT
Trigger: TGTCAACAATGAAAATCTTCAGAAGCAGCTGTCTGA...AGCACTCACAGAAGGTATGATTCCCTTCTTGGGCCTATAGAAGAACTTGAACAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR TCA 90 bp ACTCAAAACAAAACAAGAGTGACTTTGAGAATAAACAACCAATTCATCCCTCCTCTGTCCATGGAGAGCTaGGCAACAAGGGTAACGTCT +
Preference number: 4 (lower is better)
Translates to: TQNKTRVTLRINNQFIPPLSMES*ATRVTS
Trigger: AGACGTTACCCTTGTTGCTCAGCTCTCCATGGACAG...AGGAGGGATGAATTGGTTGTTTATTCTCAAAGTCACTCTTGTTTTGTTTTGAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR GCA 90 bp ACATGTCAACTCAATACAAACAGCCCAGTACAGGGTATGCCATTAGCTCTTGTTGAACTCATACTCCTGTaGATCCAATTCCATGATGTG +
Preference number: 4 (lower is better)
Translates to: TCQLNTNSPVQGMPLALVELILL*IQFHDV
Trigger: CACATCATGGAATTGGATGCACAGGAGTATGAGTTC...AACAAGAGCTAATGGCATACCCTGTACTGGGCTGTTTGTATTGAGTTGACATGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR GCA 90 bp ACATGTCAACTCAATACAAACAGCCCAGTACAGGGTATGCCATTAGCTCTTGTTAGACAGATGCGGTATTaGTTGTTGGAACGGAACTTA +
Preference number: 4 (lower is better)
Translates to: TCQLNTNSPVQGMPLALVRQMRY*LLERNL
Trigger: TAAGTTCCGTTCCAACAAGCAATACCGCATCTGTCT...AACAAGAGCTAATGGCATACCCTGTACTGGGCTGTTTGTATTGAGTTGACATGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp ACTCAAAACAAAACAAGAGTGACTTTGAGAATAAACAACCAATTCATCCCTCCTACACTTTTCCACAGCTaGCTGCTGCCCACACTCAGA +
Preference number: 4 (lower is better)
Translates to: TQNKTRVTLRINNQFIPPTLFHS*LLPTLR
Trigger: TCTGAGTGTGGGCAGCAGCCAGCTGTGGAAAAGTGT...AGGAGGGATGAATTGGTTGTTTATTCTCAAAGTCACTCTTGTTTTGTTTTGAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp ACATGTCAACTCAATACAAACAGCCCAGTACAGGGTATGCCATTAGCTCTTGTTGCATTGAAAATATCCTaGTCAGCCAAGGATGTAGAC +
Preference number: 4 (lower is better)
Translates to: TCQLNTNSPVQGMPLALVALKIS*SAKDVD
Trigger: GTCTACATCCTTGGCTGACCAGGATATTTTCAATGC...AACAAGAGCTAATGGCATACCCTGTACTGGGCTGTTTGTATTGAGTTGACATGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp CCCTTTCCTTGTGGCTTGGTGATGGTCCATAGAAAATGTGAGTTGCATATAGTGCAATCATTGCTTTCTTaGTATTGGCAAGGTCAAGCT +
Preference number: 4 (lower is better)
Translates to: PFPCGLVMVHRKCELHIVQSLLS*YWQGQA
Trigger: AGCTTGACCTTGCCAATACCAAGAAAGCAATGATTG...CACTATATGCAACTCACATTTTCTATGGACCATCACCAAGCCACAAGGAAAGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR TCA 90 bp ATAGTGAAGAGTAAAGAAAATGGGTCCAGTGTCTTCCATATGCACAATGAAGAGACAAGTAAATCCAGGTaGTGGCTGGTATGCAGAGTA +
Preference number: 4 (lower is better)
Translates to: IVKSKENGSSVFHMHNEETSKSR*WLVCRV
Trigger: TACTCTGCATACCAGCCATCACCTGGATTTACTTGT...CTCTTCATTGTGCATATGGAAGACACTGGACCCATTTTCTTTACTCTTCACTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR TCA 90 bp TTCTTCTATAGGCCCAAGAAGGGAATCATACCTTCTGTGAGTGCTGAAGTAGTTTCAGACAGCTGCTTCTaGAGATTTTCATTGTTGACA +
Preference number: 4 (lower is better)
Translates to: FFYRPKKGIIPSVSAEVVSDSCF*RFSLLT
Trigger: TGTCAACAATGAAAATCTTCAGAAGCAGCTGTCTGA...AACTACTTCAGCACTCACAGAAGGTATGATTCCCTTCTTGGGCCTATAGAAGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp ACTCAAAACAAAACAAGAGTGACTTTGAGAATAAACAACCAATTCATCCCTCCTCGATGGCCACATGGATaGTCTCACACTTTTCCACAG +
Preference number: 4 (lower is better)
Translates to: TQNKTRVTLRINNQFIPPRWPHG*SHTFPQ
Trigger: CTGTGGAAAAGTGTGAGACCATCCATGTGGCCATCG...AGGAGGGATGAATTGGTTGTTTATTCTCAAAGTCACTCTTGTTTTGTTTTGAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp AGTGTTTGGACTCATATTTCTGTAGTCCCTGTCATAGTACTGGATCTAGAGAGTCAGAGTAATGTTTGTTaGGAATCCAGGACACTTCAG +
Preference number: 4 (lower is better)
Translates to: SVWTHISVVPVIVLDLESQSNVC*ESRTLQ
Trigger: CTGAAGTGTCCTGGATTCCCAACAAACATTACTCTG...ACTCTCTAGATCCAGTACTATGACAGGGACTACAGAAATATGAGTCCAAACACT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp ACTCAAAACAAAACAAGAGTGACTTTGAGAATAAACAACCAATTCATCCCTCCTAGATACCAGTCACTCTaGTTCTCTACCAAGCCCAGG +
Preference number: 4 (lower is better)
Translates to: TQNKTRVTLRINNQFIPPRYQSL*FSTKPR
Trigger: CCTGGGCTTGGTAGAGAACCAGAGTGACTGGTATCT...AGGAGGGATGAATTGGTTGTTTATTCTCAAAGTCACTCTTGTTTTGTTTTGAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp AGTGTTTGGACTCATATTTCTGTAGTCCCTGTCATAGTACTGGATCTAGAGAGTTCTCACAACAACATATaGCTCAAAATCAGCCTCCCA +
Preference number: 4 (lower is better)
Translates to: SVWTHISVVPVIVLDLESSHNNI*LKISLP
Trigger: TGGGAGGCTGATTTTGAGCCATATGTTGTTGTGAGA...ACTCTCTAGATCCAGTACTATGACAGGGACTACAGAAATATGAGTCCAAACACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR TCA 90 bp ACTCAAAACAAAACAAGAGTGACTTTGAGAATAAACAACCAATTCATCCCTCCTCGGGACATGTCTTGTTaGAACTCTTCCTTCAGGGTT +
Preference number: 4 (lower is better)
Translates to: TQNKTRVTLRINNQFIPPRDMSC*NSSFRV
Trigger: AACCCTGAAGGAAGAGTTTCAACAAGACATGTCCCG...AGGAGGGATGAATTGGTTGTTTATTCTCAAAGTCACTCTTGTTTTGTTTTGAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR GCA 90 bp ATAGTGAAGAGTAAAGAAAATGGGTCCAGTGTCTTCCATATGCACAATGAAGAGGAACTCATACTCCTGTaGATCCAATTCCATGATGTG +
Preference number: 4 (lower is better)
Translates to: IVKSKENGSSVFHMHNEEELILL*IQFHDV
Trigger: CACATCATGGAATTGGATGCACAGGAGTATGAGTTC...CTCTTCATTGTGCATATGGAAGACACTGGACCCATTTTCTTTACTCTTCACTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp ATAGTGAAGAGTAAAGAAAATGGGTCCAGTGTCTTCCATATGCACAATGAAGAGCAGAGTAATGTTTGTTaGGAATCCAGGACACTTCAG +
Preference number: 4 (lower is better)
Translates to: IVKSKENGSSVFHMHNEEQSNVC*ESRTLQ
Trigger: CTGAAGTGTCCTGGATTCCCAACAAACATTACTCTG...CTCTTCATTGTGCATATGGAAGACACTGGACCCATTTTCTTTACTCTTCACTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CCA 90 bp ACTCAAAACAAAACAAGAGTGACTTTGAGAATAAACAACCAATTCATCCCTCCTTTGGCAAGGTCAAGCTaGATGACAGATTTCCTGAGG +
Preference number: 4 (lower is better)
Translates to: TQNKTRVTLRINNQFIPPLARSS*MTDFLR
Trigger: CCTCAGGAAATCTGTCATCCAGCTTGACCTTGCCAA...AGGAGGGATGAATTGGTTGTTTATTCTCAAAGTCACTCTTGTTTTGTTTTGAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR TCA 90 bp ACTCAAAACAAAACAAGAGTGACTTTGAGAATAAACAACCAATTCATCCCTCCTTCAGACAGCTGCTTCTaGAGATTTTCATTGTTGACA +
Preference number: 4 (lower is better)
Translates to: TQNKTRVTLRINNQFIPPSDSCF*RFSLLT
Trigger: TGTCAACAATGAAAATCTTCAGAAGCAGCTGTCTGA...AGGAGGGATGAATTGGTTGTTTATTCTCAAAGTCACTCTTGTTTTGTTTTGAGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS CCA 90 bp CAACTTCTCGAACACGCACTTCCAGGCTCTCCCGCTCCCGTTGGCTaGAGGCTGTGTACCGGGGACTGTGGGCTTGGGACTCCAGGGGAG +
Preference number: 5 (lower is better)
Translates to: QLLEHALPGSPAPVG*RLCTGDCGLGTPGE
Trigger: CTCCCCTGGAGTCCCAAGCCCACAGTCCCCGGTACACAGCCTCCAGCCAACGGGAGCGGGAGAGCCTGGAAGTGCGTGTTCGAGAAGTTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS CCA 90 bp AGGCTCTCCCGCTCCCGTTGGCTGGAGGCTGTGTACCGGGGACTGTaGGCTTGGGACTCCAGGGGAGACAGAGACACAGGTTTCCCATCT +
Preference number: 5 (lower is better)
Translates to: RLSRSRWLEAVYRGL*AWDSRGDRDTGFPS
Trigger: AGATGGGAAACCTGTGTCTCTGTCTCCCCTGGAGTCCCAAGCCCACAGTCCCCGGTACACAGCCTCCAGCCAACGGGAGCGGGAGAGCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS CCA 90 bp TCCTCAACTTCTCGAACACGCACTTCCAGGCTCTCCCGCTCCCGTTaGCTGGAGGCTGTGTACCGGGGACTGTGGGCTTGGGACTCCAGG +
Preference number: 5 (lower is better)
Translates to: SSTSRTRTSRLSRSR*LEAVYRGLWAWDSR
Trigger: CCTGGAGTCCCAAGCCCACAGTCCCCGGTACACAGCCTCCAGCCAACGGGAGCGGGAGAGCCTGGAAGTGCGTGTTCGAGAAGTTGAGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS CCA 90 bp GCAGATTCTCACTGTCCCCTGTCCCCTCCTCCATGGAGTAGGTCTTaGAGTGGTTCCCACGGTGGTGAGCAGGGCTCTGACCCTGGGCCA +
Preference number: 5 (lower is better)
Translates to: ADSHCPLSPPPWSRS*SGSHGGEQGSDPGP
Trigger: TGGCCCAGGGTCAGAGCCCTGCTCACCACCGTGGGAACCACTCCAAGACCTACTCCATGGAGGAGGGGACAGGGGACAGTGAGAATCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS TCA 90 bp GACCCTCCTTGTACACGATGTGGTAGCCCACGTTCTGCCGGCTCATaGGCACCTCGGATCCCTGGGCATAGCGGAGGAACTGCTGGGCTT +
Preference number: 5 (lower is better)
Translates to: DPPCTRCGSPRSAGS*APRIPGHSGGTAGL
Trigger: AAGCCCAGCAGTTCCTCCGCTATGCCCAGGGATCCGAGGTGCTCATGAGCCGGCAGAACGTGGGCTACCACATCGTGTACAAGGAGGGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS GCA 90 bp CCACAGCTGGCTGCTGCCCACACTCAGAGCTGTTACCTGCCACAATaGCAGCTCGCAGATTCTCACTGTCCCCTGTCCCCTCCTCCATGG +
Preference number: 5 (lower is better)
Translates to: PQLAAAHTQSCYLPQ*QLADSHCPLSPPPW
Trigger: CCATGGAGGAGGGGACAGGGGACAGTGAGAATCTGCGAGCTGGCATTGTGGCAGGTAACAGCTCTGAGTGTGGGCAGCAGCCAGCTGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS CCA 90 bp TCCCGCTCCCGTTGGCTGGAGGCTGTGTACCGGGGACTGTGGGCTTaGGACTCCAGGGGAGACAGAGACACAGGTTTCCCATCTTCAAAG +
Preference number: 5 (lower is better)
Translates to: SRSRWLEAVYRGLWA*DSRGDRDTGFPSSK
Trigger: CTTTGAAGATGGGAAACCTGTGTCTCTGTCTCCCCTGGAGTCCCAAGCCCACAGTCCCCGGTACACAGCCTCCAGCCAACGGGAGCGGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CAA 90 bp GGCCCCAGCAGGAAGTGGTTCTTCCCTTGTGGCACGTCTCTCCCTAGTGGTGGCATGACTCTCTCCAGGTaGGCAGGCAGAGTTTTGGTC +
Preference number: 5 (lower is better)
Translates to: GPSRKWFFPCGTSLPSGGMTLSR*AGRVLV
Trigger: GACCAAAACTCTGCCTGCCAACCTGGAGAGAGTCAT...GCCACCACTAGGGAGAGACGTGCCACAAGGGAAGAACCACTTCCTGCTGGGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS GCA 90 bp CAGACGATGGCCACATGGATGGTCTCACACTTTTCCACAGCTGGCTaGTGCCCACACTCAGAGCTGTTACCTGCCACAATGCCAGCTCGC +
Preference number: 5 (lower is better)
Translates to: QTMATWMVSHFSTAG*CPHSELLPATMPAR
Trigger: GCGAGCTGGCATTGTGGCAGGTAACAGCTCTGAGTGTGGGCAGCAGCCAGCTGTGGAAAAGTGTGAGACCATCCATGTGGCCATCGTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS CCA 90 bp GGCACAGACGATGGCCACATGGATGGTCTCACACTTTTCCACAGCTaGCTGCTGCCCACACTCAGAGCTGTTACCTGCCACAATGCCAGC +
Preference number: 5 (lower is better)
Translates to: GTDDGHMDGLTLFHS*LLPTLRAVTCHNAS
Trigger: GCTGGCATTGTGGCAGGTAACAGCTCTGAGTGTGGGCAGCAGCCAGCTGTGGAAAAGTGTGAGACCATCCATGTGGCCATCGTCTGTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS GCA 90 bp ACGATGGCCACATGGATGGTCTCACACTTTTCCACAGCTGGCTGCTaGCCACACTCAGAGCTGTTACCTGCCACAATGCCAGCTCGCAGA +
Preference number: 5 (lower is better)
Translates to: TMATWMVSHFSTAGC*PHSELLPATMPARR
Trigger: TCTGCGAGCTGGCATTGTGGCAGGTAACAGCTCTGAGTGTGGGCAGCAGCCAGCTGTGGAAAAGTGTGAGACCATCCATGTGGCCATCGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CAA 90 bp GCTTTTGTCTTCAAAGGCTGGGCCCCAGCAGGAAGTGGTTCTTCCCTTGTGGCAGTGGCAGTCCGCCACTaGGCAAAGTTTGTGGGTGCA +
Preference number: 5 (lower is better)
Translates to: AFVFKGWAPAGSGSSLVAVAVRH*AKFVGA
Trigger: TGCACCCACAAACTTTGCCAAGTGGCGGACTGCCAC...TGCCACAAGGGAAGAACCACTTCCTGCTGGGGCCCAGCCTTTGAAGACAAAAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CAA 90 bp TGTAGTCCCTGTCATAGTACTGGATCTAGAGAGTGGAAACTTGGAATCAGGTGGGCTCTCCCGCTCCCGTaGGCTGGAGGCTGTGTACCG +
Preference number: 5 (lower is better)
Translates to: CSPCHSTGSREWKLGIRWALPLP*AGGCVP
Trigger: CGGTACACAGCCTCCAGCCAACGGGAGCGGGAGAGC...CCACCTGATTCCAAGTTTCCACTCTCTAGATCCAGTACTATGACAGGGACTACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CAA 90 bp CACATGTCAACTCAATACAAACAGCCCAGTACAGGGTATGCCATTAGCTCTTGTCCGGGGACTGTGGGCTaGGGACTCCAGGGGAGACAG +
Preference number: 5 (lower is better)
Translates to: HMSTQYKQPSTGYAISSCPGTVG*GLQGRQ
Trigger: CTGTCTCCCCTGGAGTCCCAAGCCCACAGTCCCCGG...ACAAGAGCTAATGGCATACCCTGTACTGGGCTGTTTGTATTGAGTTGACATGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CAA 90 bp CTGTTCAAGTTCTTCTATAGGCCCAAGAAGGGAATCATACCTTCTGTGAGTGCTGCTCTCCCGCTCCCGTaGGCTGGAGGCTGTGTACCG +
Preference number: 5 (lower is better)
Translates to: LFKFFYRPKKGIIPSVSAALPLP*AGGCVP
Trigger: CGGTACACAGCCTCCAGCCAACGGGAGCGGGAGAGC...AGCACTCACAGAAGGTATGATTCCCTTCTTGGGCCTATAGAAGAACTTGAACAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CAA 90 bp GGCCCCAGCAGGAAGTGGTTCTTCCCTTGTGGCACGTCTCTCCCTAGTGGTGGCAAGAATTCCACATGTTaGTTCTTCACACGGAGCTTC +
Preference number: 5 (lower is better)
Translates to: GPSRKWFFPCGTSLPSGGKNSTC*FFTRSF
Trigger: GAAGCTCCGTGTGAAGAACAAACATGTGGAATTCTT...GCCACCACTAGGGAGAGACGTGCCACAAGGGAAGAACCACTTCCTGCTGGGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS TCA 90 bp GCTCAAACTCGTAGTGCAGGAAGTACAGGTGGGTTCTGTGGACAGTaGAGCGCTCTCGCCGGAACTCATAGCACAAGTCATCCTCATCCA +
Preference number: 5 (lower is better)
Translates to: AQTRSAGSTGGFCGQ*SALAGTHSTSHPHP
Trigger: TGGATGAGGATGACTTGTGCTATGAGTTCCGGCGAGAGCGCTTCACTGTCCACAGAACCCACCTGTACTTCCTGCACTACGAGTTTGAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CAA 90 bp TTCTTCTATAGGCCCAAGAAGGGAATCATACCTTCTGTGAGTGCTGAAGTAGTTCCGGGGACTGTGGGCTaGGGACTCCAGGGGAGACAG +
Preference number: 5 (lower is better)
Translates to: FFYRPKKGIIPSVSAEVVPGTVG*GLQGRQ
Trigger: CTGTCTCCCCTGGAGTCCCAAGCCCACAGTCCCCGG...AACTACTTCAGCACTCACAGAAGGTATGATTCCCTTCTTGGGCCTATAGAAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CAA 90 bp AGAGTAAAGAAAATGGGTCCAGTGTCTTCCATATGCACAATGAAGAGGTTCGTGGCTCTCCCGCTCCCGTaGGCTGGAGGCTGTGTACCG +
Preference number: 5 (lower is better)
Translates to: RVKKMGPVSSICTMKRFVALPLP*AGGCVP
Trigger: CGGTACACAGCCTCCAGCCAACGGGAGCGGGAGAGC...CACGAACCTCTTCATTGTGCATATGGAAGACACTGGACCCATTTTCTTTACTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CAA 90 bp GCCCCAGCAGGAAGTGGTTCTTCCCTTGTGGCACGTCTCTCCCTAGTGGTGGCTCACCAGAAAGGGGTTTaGTTTGATAACAGCATTGAA +
Preference number: 5 (lower is better)
Translates to: APAGSGSSLVARLSLVVAHQKGV*FDNSIE
Trigger: TTCAATGCTGTTATCAAACAAAACCCCTTTCTGGTG...AGCCACCACTAGGGAGAGACGTGCCACAAGGGAAGAACCACTTCCTGCTGGGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CAA 90 bp GTGTTGGCTTTTGTCTTCAAAGGCTGGGCCCCAGCAGGAAGTGGTTCTTCCCTTTCGTCGGGACATGTCTaGTTGAAACTCTTCCTTCAG +
Preference number: 5 (lower is better)
Translates to: VLAFVFKGWAPAGSGSSLSSGHV*LKLFLQ
Trigger: CTGAAGGAAGAGTTTCAACAAGACATGTCCCGACGA...AAGGGAAGAACCACTTCCTGCTGGGGCCCAGCCTTTGAAGACAAAAGCCAACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS GCA 90 bp CACTTCAGACTTGAGCTCATCAGCATTATAGAAGTCTACTCGCACTaGAGGTACCATCCAGGTCTGGAAGAGTGTAGCCAGGATCTGCTC +
Preference number: 5 (lower is better)
Translates to: HFRLELISIIEVYSH*RYHPGLEECSQDLL
Trigger: GAGCAGATCCTGGCTACACTCTTCCAGACCTGGATGGTACCTGCAGTGCGAGTAGACTTCTATAATGCTGATGAGCTCAAGTCTGAAGTG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS GCA 90 bp GACAACATGCCCATGAGTTCCCTCTCTGCTGTCAGTCTCCACATCTaGTCCCATTTCATCTTCCGAAGCTTGTCCAGAAGCAGTAGTATG +
Preference number: 5 (lower is better)
Translates to: DNMPMSSLSAVSLHI*SHFIFRSLSRSSSM
Trigger: CATACTACTGCTTCTGGACAAGCTTCGGAAGATGAAATGGGAGCAGATGTGGAGACTGACAGCAGAGAGGGAACTCATGGGCATGTTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS CCA 90 bp ATAGGGTCCCCATGTCCAACATTGACAGCAGCTCTGCTTTTGACTTaGGGAAAGAGAGTCTGTAGCGCAGCGTTTCAAATGCTGGGACAA +
Preference number: 5 (lower is better)
Translates to: IGSPCPTLTAALLLT*GKRVCSAAFQMLGQ
Trigger: TTGTCCCAGCATTTGAAACGCTGCGCTACAGACTCTCTTTCCCCAAGTCAAAAGCAGAGCTGCTGTCAATGTTGGACATGGGGACCCTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS CCA 90 bp AAATCTCCGATCATACTCAGGGCAGTCTCGTCTCACAACAACATATaGCTCAAAATCAGCCTCCCACTCAACCTGGTAAGGTGTGGTGGC +
Preference number: 5 (lower is better)
Translates to: KSPIILRAVSSHNNI*LKISLPLNLVRCGG
Trigger: GCCACCACACCTTACCAGGTTGAGTGGGAGGCTGATTTTGAGCCATATGTTGTTGTGAGACGAGACTGCCCTGAGTATGATCGGAGATTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CAA 90 bp TGTAGTCCCTGTCATAGTACTGGATCTAGAGAGTGGAAACTTGGAATCAGGTGGATGACTCTCTCCAGGTaGGCAGGCAGAGTTTTGGTC +
Preference number: 5 (lower is better)
Translates to: CSPCHSTGSREWKLGIRWMTLSR*AGRVLV
Trigger: GACCAAAACTCTGCCTGCCAACCTGGAGAGAGTCAT...CCACCTGATTCCAAGTTTCCACTCTCTAGATCCAGTACTATGACAGGGACTACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CAA 90 bp ATAGTACTGGATCTAGAGAGTGGAAACTTGGAATCAGGTGGTCTCAGTGTTCATGTGGCAGTCCGCCACTaGGCAAAGTTTGTGGGTGCA +
Preference number: 5 (lower is better)
Translates to: IVLDLESGNLESGGLSVHVAVRH*AKFVGA
Trigger: TGCACCCACAAACTTTGCCAAGTGGCGGACTGCCAC...ATGAACACTGAGACCACCTGATTCCAAGTTTCCACTCTCTAGATCCAGTACTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS TCA 90 bp CAGGTTTCCCATCTTCAAAGCTCCCAGCAAACAAGTAAATCCAGGTaGTGGCTGGTATGCAGAGTAGAGTCAAAGAGGCAGCCAGGAATT +
Preference number: 5 (lower is better)
Translates to: QVSHLQSSQQTSKSR*WLVCRVESKRQPGI
Trigger: AATTCCTGGCTGCCTCTTTGACTCTACTCTGCATACCAGCCATCACCTGGATTTACTTGTTTGCTGGGAGCTTTGAAGATGGGAAACCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CAA 90 bp CTGTTCAAGTTCTTCTATAGGCCCAAGAAGGGAATCATACCTTCTGTGAGTGCTCAGATGCGGTATTGCTaGTTGGAACGGAACTTAGTG +
Preference number: 5 (lower is better)
Translates to: LFKFFYRPKKGIIPSVSAQMRYC*LERNLV
Trigger: CACTAAGTTCCGTTCCAACAAGCAATACCGCATCTG...AGCACTCACAGAAGGTATGATTCCCTTCTTGGGCCTATAGAAGAACTTGAACAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CAA 90 bp TGTCAACTCAATACAAACAGCCCAGTACAGGGTATGCCATTAGCTCTTGTTCTCTCTTCCTTCAGGGTTTaGAGACAGATGCGGTATTGC +
Preference number: 5 (lower is better)
Translates to: CQLNTNSPVQGMPLALVLSSFRV*RQMRYC
Trigger: GCAATACCGCATCTGTCTCAAAACCCTGAAGGAAGA...GAGAACAAGAGCTAATGGCATACCCTGTACTGGGCTGTTTGTATTGAGTTGACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CAA 90 bp CCCTTTCCTTGTGGCTTGGTGATGGTCCATAGAAAATGTGAGTTGCATATAGTGTCTTCCTTCAGGGTTTaGAGACAGATGCGGTATTGC +
Preference number: 5 (lower is better)
Translates to: PFPCGLVMVHRKCELHIVSSFRV*RQMRYC
Trigger: GCAATACCGCATCTGTCTCAAAACCCTGAAGGAAGA...CACTATATGCAACTCACATTTTCTATGGACCATCACCAAGCCACAAGGAAAGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CAA 90 bp CCCTTTCCTTGTGGCTTGGTGATGGTCCATAGAAAATGTGAGTTGCATATAGTGTCGTCGGGACATGTCTaGTTGAAACTCTTCCTTCAG +
Preference number: 5 (lower is better)
Translates to: PFPCGLVMVHRKCELHIVSSGHV*LKLFLQ
Trigger: CTGAAGGAAGAGTTTCAACAAGACATGTCCCGACGA...CACTATATGCAACTCACATTTTCTATGGACCATCACCAAGCCACAAGGAAAGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CAA 90 bp CTGTTCAAGTTCTTCTATAGGCCCAAGAAGGGAATCATACCTTCTGTGAGTGCTTCGTCGGGACATGTCTaGTTGAAACTCTTCCTTCAG +
Preference number: 5 (lower is better)
Translates to: LFKFFYRPKKGIIPSVSASSGHV*LKLFLQ
Trigger: CTGAAGGAAGAGTTTCAACAAGACATGTCCCGACGA...AGCACTCACAGAAGGTATGATTCCCTTCTTGGGCCTATAGAAGAACTTGAACAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS TCA 90 bp AGATATTTCAAGGCAGCAAAGCCATATCGTCGGGACATGTCTTGTTaGAACTCTTCCTTCAGGGTTTTGAGACAGATGCGGTATTGCTTG +
Preference number: 5 (lower is better)
Translates to: RYFKAAKPYRRDMSC*NSSFRVLRQMRYCL
Trigger: CAAGCAATACCGCATCTGTCTCAAAACCCTGAAGGAAGAGTTTCAACAAGACATGTCCCGACGATATGGCTTTGCTGCCTTGAAATATCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CAA 90 bp ATAGTGAAGAGTAAAGAAAATGGGTCCAGTGTCTTCCATATGCACAATGAAGAGATGACTCTCTCCAGGTaGGCAGGCAGAGTTTTGGTC +
Preference number: 5 (lower is better)
Translates to: IVKSKENGSSVFHMHNEEMTLSR*AGRVLV
Trigger: GACCAAAACTCTGCCTGCCAACCTGGAGAGAGTCAT...CTCTTCATTGTGCATATGGAAGACACTGGACCCATTTTCTTTACTCTTCACTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CAA 90 bp ACTCAAAACAAAACAAGAGTGACTTTGAGAATAAACAACCAATTCATCCCTCCTGTGGCAGTCCGCCACTaGGCAAAGTTTGTGGGTGCA +
Preference number: 5 (lower is better)
Translates to: TQNKTRVTLRINNQFIPPVAVRH*AKFVGA
Trigger: TGCACCCACAAACTTTGCCAAGTGGCGGACTGCCAC...AGGAGGGATGAATTGGTTGTTTATTCTCAAAGTCACTCTTGTTTTGTTTTGAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CAA 90 bp TGTCAACTCAATACAAACAGCCCAGTACAGGGTATGCCATTAGCTCTTGTTCTCATGCGGTATTGCTTGTaGGAACGGAACTTAGTGATG +
Preference number: 5 (lower is better)
Translates to: CQLNTNSPVQGMPLALVLMRYCL*ERNLVM
Trigger: CATCACTAAGTTCCGTTCCAACAAGCAATACCGCAT...GAGAACAAGAGCTAATGGCATACCCTGTACTGGGCTGTTTGTATTGAGTTGACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CAA 90 bp AGAGTAAAGAAAATGGGTCCAGTGTCTTCCATATGCACAATGAAGAGGTTCGTGCAGATGCGGTATTGCTaGTTGGAACGGAACTTAGTG +
Preference number: 5 (lower is better)
Translates to: RVKKMGPVSSICTMKRFVQMRYC*LERNLV
Trigger: CACTAAGTTCCGTTCCAACAAGCAATACCGCATCTG...CACGAACCTCTTCATTGTGCATATGGAAGACACTGGACCCATTTTCTTTACTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CAA 90 bp ATAGTACTGGATCTAGAGAGTGGAAACTTGGAATCAGGTGGTCTCAGTGTTCATTCTTCCTTCAGGGTTTaGAGACAGATGCGGTATTGC +
Preference number: 5 (lower is better)
Translates to: IVLDLESGNLESGGLSVHSSFRV*RQMRYC
Trigger: GCAATACCGCATCTGTCTCAAAACCCTGAAGGAAGA...ATGAACACTGAGACCACCTGATTCCAAGTTTCCACTCTCTAGATCCAGTACTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS TCA 90 bp AAATTCCAGAGTAATGTTTGTTGGGAATCCAGGACACTTCAGACTTaGGCTCATCAGCATTATAGAAGTCTACTCGCACTGCAGGTACCA +
Preference number: 5 (lower is better)
Translates to: KFQSNVCWESRTLQT*AHQHYRSLLALQVP
Trigger: TGGTACCTGCAGTGCGAGTAGACTTCTATAATGCTGATGAGCTCAAGTCTGAAGTGTCCTGGATTCCCAACAAACATTACTCTGGAATTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CAA 90 bp TGTAGTCCCTGTCATAGTACTGGATCTAGAGAGTGGAAACTTGGAATCAGGTGGTGTTTGATAACAGCATaGAAAATATCCTGGTCAGCC +
Preference number: 5 (lower is better)
Translates to: CSPCHSTGSREWKLGIRWCLITA*KISWSA
Trigger: GGCTGACCAGGATATTTTCAATGCTGTTATCAAACA...CCACCTGATTCCAAGTTTCCACTCTCTAGATCCAGTACTATGACAGGGACTACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CAA 90 bp TGTAGTCCCTGTCATAGTACTGGATCTAGAGAGTGGAAACTTGGAATCAGGTGGCACCAGAAAGGGGTTTaGTTTGATAACAGCATTGAA +
Preference number: 5 (lower is better)
Translates to: CSPCHSTGSREWKLGIRWHQKGV*FDNSIE
Trigger: TTCAATGCTGTTATCAAACAAAACCCCTTTCTGGTG...CCACCTGATTCCAAGTTTCCACTCTCTAGATCCAGTACTATGACAGGGACTACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CAA 90 bp CAACTCAATACAAACAGCCCAGTACAGGGTATGCCATTAGCTCTTGTTCTCATCAAGAATTCCACATGTTaGTTCTTCACACGGAGCTTC +
Preference number: 5 (lower is better)
Translates to: QLNTNSPVQGMPLALVLIKNSTC*FFTRSF
Trigger: GAAGCTCCGTGTGAAGAACAAACATGTGGAATTCTT...GATGAGAACAAGAGCTAATGGCATACCCTGTACTGGGCTGTTTGTATTGAGTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CAA 90 bp CCTTGTGGCTTGGTGATGGTCCATAGAAAATGTGAGTTGCATATAGTGTTTGGAATGCGGTATTGCTTGTaGGAACGGAACTTAGTGATG +
Preference number: 5 (lower is better)
Translates to: PCGLVMVHRKCELHIVFGMRYCL*ERNLVM
Trigger: CATCACTAAGTTCCGTTCCAACAAGCAATACCGCAT...TCCAAACACTATATGCAACTCACATTTTCTATGGACCATCACCAAGCCACAAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CAA 90 bp AGAGTAAAGAAAATGGGTCCAGTGTCTTCCATATGCACAATGAAGAGGTTCGTGATGCGGTATTGCTTGTaGGAACGGAACTTAGTGATG +
Preference number: 5 (lower is better)
Translates to: RVKKMGPVSSICTMKRFVMRYCL*ERNLVM
Trigger: CATCACTAAGTTCCGTTCCAACAAGCAATACCGCAT...CACGAACCTCTTCATTGTGCATATGGAAGACACTGGACCCATTTTCTTTACTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CAA 90 bp TTCTGTAGTCCCTGTCATAGTACTGGATCTAGAGAGTGGAAACTTGGAATCAGGTGTTTGATAACAGCATaGAAAATATCCTGGTCAGCC +
Preference number: 5 (lower is better)
Translates to: FCSPCHSTGSREWKLGIRCLITA*KISWSA
Trigger: GGCTGACCAGGATATTTTCAATGCTGTTATCAAACA...CCTGATTCCAAGTTTCCACTCTCTAGATCCAGTACTATGACAGGGACTACAGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CAA 90 bp CAACTCAATACAAACAGCCCAGTACAGGGTATGCCATTAGCTCTTGTTCTCATCCACCAGAAAGGGGTTTaGTTTGATAACAGCATTGAA +
Preference number: 5 (lower is better)
Translates to: QLNTNSPVQGMPLALVLIHQKGV*FDNSIE
Trigger: TTCAATGCTGTTATCAAACAAAACCCCTTTCTGGTG...GATGAGAACAAGAGCTAATGGCATACCCTGTACTGGGCTGTTTGTATTGAGTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CAA 90 bp TTCTTCTATAGGCCCAAGAAGGGAATCATACCTTCTGTGAGTGCTGAAGTAGTTAAGAATTCCACATGTTaGTTCTTCACACGGAGCTTC +
Preference number: 5 (lower is better)
Translates to: FFYRPKKGIIPSVSAEVVKNSTC*FFTRSF
Trigger: GAAGCTCCGTGTGAAGAACAAACATGTGGAATTCTT...AACTACTTCAGCACTCACAGAAGGTATGATTCCCTTCTTGGGCCTATAGAAGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CAA 90 bp ATAGTGAAGAGTAAAGAAAATGGGTCCAGTGTCTTCCATATGCACAATGAAGAGCAGATGCGGTATTGCTaGTTGGAACGGAACTTAGTG +
Preference number: 5 (lower is better)
Translates to: IVKSKENGSSVFHMHNEEQMRYC*LERNLV
Trigger: CACTAAGTTCCGTTCCAACAAGCAATACCGCATCTG...CTCTTCATTGTGCATATGGAAGACACTGGACCCATTTTCTTTACTCTTCACTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS-3UTR CAA 90 bp AGAGTAAAGAAAATGGGTCCAGTGTCTTCCATATGCACAATGAAGAGGTTCGTGTGTTTGATAACAGCATaGAAAATATCCTGGTCAGCC +
Preference number: 5 (lower is better)
Translates to: RVKKMGPVSSICTMKRFVCLITA*KISWSA
Trigger: GGCTGACCAGGATATTTTCAATGCTGTTATCAAACA...CACGAACCTCTTCATTGTGCATATGGAAGACACTGGACCCATTTTCTTTACTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS CCA 72 bp GAACACGCACTTCCAGGCTCTCCCGCTCCCGTTGGCTaGAGGCTGTGTACCGGGGACTGTGGGCTTGGGACT +
Preference number: 6 (lower is better)
Translates to: EHALPGSPAPVG*RLCTGDCGLGT
Trigger: AGTCCCAAGCCCACAGTCCCCGGTACACAGCCTCCAGCCAACGGGAGCGGGAGAGCCTGGAAGTGCGTGTTC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS CCA 72 bp TCTCGAACACGCACTTCCAGGCTCTCCCGCTCCCGTTaGCTGGAGGCTGTGTACCGGGGACTGTGGGCTTGG +
Preference number: 6 (lower is better)
Translates to: SRTRTSRLSRSR*LEAVYRGLWAW
Trigger: CCAAGCCCACAGTCCCCGGTACACAGCCTCCAGCCAACGGGAGCGGGAGAGCCTGGAAGTGCGTGTTCGAGA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS CAA 72 bp TTCTCGAACACGCACTTCCAGGCTCTCCCGCTCCCGTaGGCTGGAGGCTGTGTACCGGGGACTGTGGGCTTG +
Preference number: 6 (lower is better)
Translates to: FSNTHFQALPLP*AGGCVPGTVGL
Trigger: CAAGCCCACAGTCCCCGGTACACAGCCTCCAGCCAACGGGAGCGGGAGAGCCTGGAAGTGCGTGTTCGAGAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS CAA 90 bp CTCCTCAACTTCTCGAACACGCACTTCCAGGCTCTCCCGCTCCCGTaGGCTGGAGGCTGTGTACCGGGGACTGTGGGCTTGGGACTCCAG +
Preference number: 6 (lower is better)
Translates to: LLNFSNTHFQALPLP*AGGCVPGTVGLGLQ
Trigger: CTGGAGTCCCAAGCCCACAGTCCCCGGTACACAGCCTCCAGCCAACGGGAGCGGGAGAGCCTGGAAGTGCGTGTTCGAGAAGTTGAGGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS CCA 72 bp CGTTGGCTGGAGGCTGTGTACCGGGGACTGTGGGCTTaGGACTCCAGGGGAGACAGAGACACAGGTTTCCCA +
Preference number: 6 (lower is better)
Translates to: RWLEAVYRGLWA*DSRGDRDTGFP
Trigger: TGGGAAACCTGTGTCTCTGTCTCCCCTGGAGTCCCAAGCCCACAGTCCCCGGTACACAGCCTCCAGCCAACG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS TCA 72 bp TGTACACGATGTGGTAGCCCACGTTCTGCCGGCTCATaGGCACCTCGGATCCCTGGGCATAGCGGAGGAACT +
Preference number: 6 (lower is better)
Translates to: CTRCGSPRSAGS*APRIPGHSGGT
Trigger: AGTTCCTCCGCTATGCCCAGGGATCCGAGGTGCTCATGAGCCGGCAGAACGTGGGCTACCACATCGTGTACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS GCA 72 bp GCTGCTGCCCACACTCAGAGCTGTTACCTGCCACAATaGCAGCTCGCAGATTCTCACTGTCCCCTGTCCCCT +
Preference number: 6 (lower is better)
Translates to: AAAHTQSCYLPQ*QLADSHCPLSP
Trigger: AGGGGACAGGGGACAGTGAGAATCTGCGAGCTGGCATTGTGGCAGGTAACAGCTCTGAGTGTGGGCAGCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS CCA 72 bp GATGGCCACATGGATGGTCTCACACTTTTCCACAGCTaGCTGCTGCCCACACTCAGAGCTGTTACCTGCCAC +
Preference number: 6 (lower is better)
Translates to: DGHMDGLTLFHS*LLPTLRAVTCH
Trigger: GTGGCAGGTAACAGCTCTGAGTGTGGGCAGCAGCCAGCTGTGGAAAAGTGTGAGACCATCCATGTGGCCATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS CCA 72 bp TGGCATTGTATCCGGCACAGACGATGGCCACATGGATaGTCTCACACTTTTCCACAGCTGGCTGCTGCCCAC +
Preference number: 6 (lower is better)
Translates to: WHCIRHRRWPHG*SHTFPQLAAAH
Trigger: GTGGGCAGCAGCCAGCTGTGGAAAAGTGTGAGACCATCCATGTGGCCATCGTCTGTGCCGGATACAATGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS GCA 72 bp GCCACATGGATGGTCTCACACTTTTCCACAGCTGGCTaGTGCCCACACTCAGAGCTGTTACCTGCCACAATG +
Preference number: 6 (lower is better)
Translates to: ATWMVSHFSTAG*CPHSELLPATM
Trigger: CATTGTGGCAGGTAACAGCTCTGAGTGTGGGCAGCAGCCAGCTGTGGAAAAGTGTGAGACCATCCATGTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS CCA 72 bp CAACGTCCCTGCTGGCATTGTATCCGGCACAGACGATaGCCACATGGATGGTCTCACACTTTTCCACAGCTG +
Preference number: 6 (lower is better)
Translates to: QRPCWHCIRHRR*PHGWSHTFPQL
Trigger: CAGCTGTGGAAAAGTGTGAGACCATCCATGTGGCCATCGTCTGTGCCGGATACAATGCCAGCAGGGACGTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS TCA 72 bp GGTTCCGCCTATGAAAGAGGACAGATTTCACCAGGGTaGCAACGTCCCTGCTGGCATTGTATCCGGCACAGA +
Preference number: 6 (lower is better)
Translates to: GSAYERGQISPG*QRPCWHCIRHR
Trigger: TCTGTGCCGGATACAATGCCAGCAGGGACGTTGTCACCCTGGTGAAATCTGTCCTCTTTCATAGGCGGAACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS TCA 72 bp CGTAGTGCAGGAAGTACAGGTGGGTTCTGTGGACAGTaGAGCGCTCTCGCCGGAACTCATAGCACAAGTCAT +
Preference number: 6 (lower is better)
Translates to: RSAGSTGGFCGQ*SALAGTHSTSH
Trigger: ATGACTTGTGCTATGAGTTCCGGCGAGAGCGCTTCACTGTCCACAGAACCCACCTGTACTTCCTGCACTACG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS GCA 72 bp ACATGGATGGTCTCACACTTTTCCACAGCTGGCTGCTaGCCACACTCAGAGCTGTTACCTGCCACAATGCCA +
Preference number: 6 (lower is better)
Translates to: TWMVSHFSTAGC*PHSELLPATMP
Trigger: TGGCATTGTGGCAGGTAACAGCTCTGAGTGTGGGCAGCAGCCAGCTGTGGAAAAGTGTGAGACCATCCATGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS GCA 72 bp CCCATGAGTTCCCTCTCTGCTGTCAGTCTCCACATCTaGTCCCATTTCATCTTCCGAAGCTTGTCCAGAAGC +
Preference number: 6 (lower is better)
Translates to: PMSSLSAVSLHI*SHFIFRSLSRS
Trigger: GCTTCTGGACAAGCTTCGGAAGATGAAATGGGAGCAGATGTGGAGACTGACAGCAGAGAGGGAACTCATGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS CCA 72 bp TCTACCAAGCCCAGGACCTGTTGCCCTTTGAACTTATaGAACACGGCCCACAGCTCTGCAATGTCTGTTGCA +
Preference number: 6 (lower is better)
Translates to: STKPRTCCPLNL*NTAHSSAMSVA
Trigger: TGCAACAGACATTGCAGAGCTGTGGGCCGTGTTCCATAAGTTCAAAGGGCAACAGGTCCTGGGCTTGGTAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS CAA 72 bp GGGTCCCCATGTCCAACATTGACAGCAGCTCTGCTTTaGACTTGGGGAAAGAGAGTCTGTAGCGCAGCGTTT +
Preference number: 6 (lower is better)
Translates to: GSPCPTLTAALL*TWGKRVCSAAF
Trigger: AAACGCTGCGCTACAGACTCTCTTTCCCCAAGTCAAAAGCAGAGCTGCTGTCAATGTTGGACATGGGGACCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS TCA 72 bp ATGGCCTCCAGCATCTGTAGTCTGTCCATGGAGAGCTaGGCAACAAGGGTAACGTCTGTGTTGTCAGCAGAA +
Preference number: 6 (lower is better)
Translates to: MASSICSLSMES*ATRVTSVLSAE
Trigger: TTCTGCTGACAACACAGACGTTACCCTTGTTGCTCAGCTCTCCATGGACAGACTACAGATGCTGGAGGCCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS GCA 72 bp CTTGAGCTCATCAGCATTATAGAAGTCTACTCGCACTaGAGGTACCATCCAGGTCTGGAAGAGTGTAGCCAG +
Preference number: 6 (lower is better)
Translates to: LELISIIEVYSH*RYHPGLEECSQ
Trigger: CTGGCTACACTCTTCCAGACCTGGATGGTACCTGCAGTGCGAGTAGACTTCTATAATGCTGATGAGCTCAAG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS CCA 72 bp GACTCCTGTGTTATAGCCCCTTCCAAGAGCTGGCCATaGACGGTGGTTTTTCCAGAGATTTCCAAGATACCA +
Preference number: 6 (lower is better)
Translates to: DSCVIAPSKSWP*TVVFPEISKIP
Trigger: TGGTATCTTGGAAATCTCTGGAAAAACCACCGTCCATGGCCAGCTCTTGGAAGGGGCTATAACACAGGAGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS TCA 72 bp ATTTCATCTTCCGAAGCTTGTCCAGAAGCAGTAGTATaGCTCCTGTGTTATAGCCCCTTCCAAGAGCTGGCC +
Preference number: 6 (lower is better)
Translates to: ISSSEACPEAVV*LLCYSPFQELA
Trigger: GGCCAGCTCTTGGAAGGGGCTATAACACAGGAGTCATACTACTGCTTCTGGACAAGCTTCGGAAGATGAAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS TCA 72 bp AAGGCAGCAAAGCCATATCGTCGGGACATGTCTTGTTaGAACTCTTCCTTCAGGGTTTTGAGACAGATGCGG +
Preference number: 6 (lower is better)
Translates to: KAAKPYRRDMSC*NSSFRVLRQMR
Trigger: CCGCATCTGTCTCAAAACCCTGAAGGAAGAGTTTCAACAAGACATGTCCCGACGATATGGCTTTGCTGCCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS CCA 72 bp CCATGTCCAACATTGACAGCAGCTCTGCTTTTGACTTaGGGAAAGAGAGTCTGTAGCGCAGCGTTTCAAATG +
Preference number: 6 (lower is better)
Translates to: PCPTLTAALLLT*GKRVCSAAFQM
Trigger: CATTTGAAACGCTGCGCTACAGACTCTCTTTCCCCAAGTCAAAAGCAGAGCTGCTGTCAATGTTGGACATGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS CAA 72 bp CAAGGCAGCAAAGCCATATCGTCGGGACATGTCTTGTaGAAACTCTTCCTTCAGGGTTTTGAGACAGATGCG +
Preference number: 6 (lower is better)
Translates to: QGSKAISSGHVL*KLFLQGFETDA
Trigger: CGCATCTGTCTCAAAACCCTGAAGGAAGAGTTTCAACAAGACATGTCCCGACGATATGGCTTTGCTGCCTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS TCA 72 bp TGGTCTGACAGCTGCACATTCCAGAAGCAGGGAAGCTaGTACACCAGAAAGGGGTTTTGTTTGATAACAGCA +
Preference number: 6 (lower is better)
Translates to: WSDSCTFQKQGS*YTRKGFCLITA
Trigger: TGCTGTTATCAAACAAAACCCCTTTCTGGTGTATCAGCTTCCCTGCTTCTGGAATGTGCAGCTGTCAGACCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS GCA 72 bp CTTGGGGAAAGAGAGTCTGTAGCGCAGCGTTTCAAATaGTGGGACAATCATTGCTTTCTTGGTATTGGCAAG +
Preference number: 6 (lower is better)
Translates to: LGERESVAQRFK*WDNHCFLGIGK
Trigger: CTTGCCAATACCAAGAAAGCAATGATTGTCCCAGCATTTGAAACGCTGCGCTACAGACTCTCTTTCCCCAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS CAA 72 bp TCCTTCAGGGTTTTGAGACAGATGCGGTATTGCTTGTaGGAACGGAACTTAGTGATGTCGAAACTAGGGGCA +
Preference number: 6 (lower is better)
Translates to: SFRVLRQMRYCL*ERNLVMSKLGA
Trigger: TGCCCCTAGTTTCGACATCACTAAGTTCCGTTCCAACAAGCAATACCGCATCTGTCTCAAAACCCTGAAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS CAA 90 bp GTCTTGTTGAAACTCTTCCTTCAGGGTTTTGAGACAGATGCGGTATaGCTTGTTGGAACGGAACTTAGTGATGTCGAAACTAGGGGCATG +
Preference number: 6 (lower is better)
Translates to: VLLKLFLQGFETDAV*LVGTELSDVETRGM
Trigger: CATGCCCCTAGTTTCGACATCACTAAGTTCCGTTCCAACAAGCAATACCGCATCTGTCTCAAAACCCTGAAGGAAGAGTTTCAACAAGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS CAA 72 bp TCTTCCTTCAGGGTTTTGAGACAGATGCGGTATTGCTaGTTGGAACGGAACTTAGTGATGTCGAAACTAGGG +
Preference number: 6 (lower is better)
Translates to: SSFRVLRQMRYC*LERNLVMSKLG
Trigger: CCCTAGTTTCGACATCACTAAGTTCCGTTCCAACAAGCAATACCGCATCTGTCTCAAAACCCTGAAGGAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS CAA 90 bp GAGATATTTCAAGGCAGCAAAGCCATATCGTCGGGACATGTCTTGTaGAAACTCTTCCTTCAGGGTTTTGAGACAGATGCGGTATTGCTT +
Preference number: 6 (lower is better)
Translates to: EIFQGSKAISSGHVL*KLFLQGFETDAVLL
Trigger: AAGCAATACCGCATCTGTCTCAAAACCCTGAAGGAAGAGTTTCAACAAGACATGTCCCGACGATATGGCTTTGCTGCCTTGAAATATCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS CAA 90 bp TGTGAGATATTTCAAGGCAGCAAAGCCATATCGTCGGGACATGTCTaGTTGAAACTCTTCCTTCAGGGTTTTGAGACAGATGCGGTATTG +
Preference number: 6 (lower is better)
Translates to: CEIFQGSKAISSGHV*LKLFLQGFETDAVL
Trigger: CAATACCGCATCTGTCTCAAAACCCTGAAGGAAGAGTTTCAACAAGACATGTCCCGACGATATGGCTTTGCTGCCTTGAAATATCTCACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS CAA 72 bp TTTCAAGGCAGCAAAGCCATATCGTCGGGACATGTCTaGTTGAAACTCTTCCTTCAGGGTTTTGAGACAGAT +
Preference number: 6 (lower is better)
Translates to: FQGSKAISSGHV*LKLFLQGFETD
Trigger: ATCTGTCTCAAAACCCTGAAGGAAGAGTTTCAACAAGACATGTCCCGACGATATGGCTTTGCTGCCTTGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2
CDS GCA 72 bp AACTCTTCCTTCAGGGTTTTGAGACAGATGCGGTATTaGTTGTTGGAACGGAACTTAGTGATGTCGAAACTA +
Preference number: 6 (lower is better)
Translates to: NSSFRVLRQMRY*LLERNLVMSKL
Trigger: TAGTTTCGACATCACTAAGTTCCGTTCCAACAAGCAATACCGCATCTGTCTCAAAACCCTGAAGGAAGAGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004497.11
ENSMUST00000119826.7
ENSMUST00000212459.2