Pregenerated sensors for LAPTM4B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022257Ensembl transcript IDs: ENSMUST00000022867.5, ENSMUST00000226437.2, ENSMUST00000228547.2
Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GACACATCAACCATAGCCCAAAACAACAGGCAGCCCGGCAGCTGTTaGCCTCACTGTTGCCTATTACCTTGGGGGTCTTTATTTGGCCCA | + |
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Preference number: 1 (lower is better) Translates to: DTSTIAQNNRQPGSC*PHCCLLPWGSLFGP Trigger: TGGGCCAAATAAAGACCCCCAAGGTAATAGGCAACAGTGAGGGCAACAGCTGCCGGGCTGCCTGTTGTTTTGGGCTATGGTTGATGTGTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000022867.5 ENSMUST00000226437.2 |
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| 3UTR TCA 90 bp | ATACTTAGAAATTCAAAGCAGGTTGTACCTTGCAAGAAAAGAGTGTaGACACCTTTTCCCAAACATACATGGTGGCTCTGTTGGTGCAGG | + |
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Preference number: 1 (lower is better) Translates to: ILRNSKQVVPCKKRV*TPFPKHTWWLCWCR Trigger: CCTGCACCAACAGAGCCACCATGTATGTTTGGGAAAAGGTGTTCACACTCTTTTCTTGCAAGGTACAACCTGCTTTGAATTTCTAAGTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022867.5 ENSMUST00000226437.2 |
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| 3UTR-3UTR GCA 90 bp | GAGAAAGACTCTGGGAACTCACCACACTCCACTCCTACAGCCTCGCTAGTCAGTGCTAAGGGCTCAAACTaGTGCTCTCAGCTCTTCCGC | + |
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Preference number: 2 (lower is better) Translates to: EKDSGNSPHSTPTASLVSAKGSN*CSQLFR Trigger: GCGGAAGAGCTGAGAGCAGCAGTTTGAGCCCTTAGC...ACTGACTAGCGAGGCTGTAGGAGTGGAGTGTGGTGAGTTCCCAGAGTCTTTCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000022867.5 ENSMUST00000226437.2 ENSMUST00000228547.2 |
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| 3UTR-3UTR GCA 90 bp | ACAGCAGTAGCATCATCGTACGGAGGCAGCAGCACTGTGGTATCATTGCTGGTAGCTAAGGGCTCAAACTaGTGCTCTCAGCTCTTCCGC | + |
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Preference number: 2 (lower is better) Translates to: TAVASSYGGSSTVVSLLVAKGSN*CSQLFR Trigger: GCGGAAGAGCTGAGAGCAGCAGTTTGAGCCCTTAGC...TACCAGCAATGATACCACAGTGCTGCTGCCTCCGTACGATGATGCTACTGCTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226437.2 |
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| 3UTR-3UTR TCA 90 bp | TGTGTACAGCACATTGAGCAAGGACCAAGCAGGAGACCTGCTCACATTCAGAGAAGGAGTTCCTGCCGTTaGTGTACCTGTAGCAGCTCC | + |
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Preference number: 2 (lower is better) Translates to: CVQHIEQGPSRRPAHIQRRSSCR*CTCSSS Trigger: GGAGCTGCTACAGGTACATCAACGGCAGGAACTCCT...TCTCTGAATGTGAGCAGGTCTCCTGCTTGGTCCTTGCTCAATGTGCTGTACACA 52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226437.2 |
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| 3UTR-3UTR GCA 90 bp | GAAAGACTCTGGGAACTCACCACACTCCACTCCTACAGCCTCGCTAGTCAGTGCAGCATGTTGCTTGTATaGACCGTAAGTAGCCATGGC | + |
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Preference number: 2 (lower is better) Translates to: ERLWELTTLHSYSLASQCSMLLV*TVSSHG Trigger: GCCATGGCTACTTACGGTGCATACAAGCAACATGCT...GCACTGACTAGCGAGGCTGTAGGAGTGGAGTGTGGTGAGTTCCCAGAGTCTTTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226437.2 |
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| 3UTR-3UTR CCA 90 bp | AAAGCCTTTGTGTACAGCACATTGAGCAAGGACCAAGCAGGAGACCTGCTCACAGGACACGTAAGGTGGTaGTGGTTCCTTGGCAGTGCT | + |
|
Preference number: 2 (lower is better) Translates to: KAFVYSTLSKDQAGDLLTGHVRW*WFLGSA Trigger: AGCACTGCCAAGGAACCACCACCACCTTACGTGTCC...TGTGAGCAGGTCTCCTGCTTGGTCCTTGCTCAATGTGCTGTACACAAAGGCTTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226437.2 |
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| 3UTR-3UTR CCA 90 bp | GCCTATTACCTTGGGGGTCTTTATTTGGCCCAAAGAAAATCCTTGACCAGCAAACACGTAAGGTGGTGGTaGTTCCTTGGCAGTGCTAGG | + |
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Preference number: 2 (lower is better) Translates to: AYYLGGLYLAQRKSLTSKHVRWW*FLGSAR Trigger: CCTAGCACTGCCAAGGAACCACCACCACCTTACGTG...TTTGCTGGTCAAGGATTTTCTTTGGGCCAAATAAAGACCCCCAAGGTAATAGGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000226437.2 |
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| 3UTR-3UTR TCA 90 bp | ATTGAGCAAGGACCAAGCAGGAGACCTGCTCACATTCAGAGACATGAACATAAATGGAGAAGAAAAGTATaGCTGCCCACCCAGCTCTGG | + |
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Preference number: 2 (lower is better) Translates to: IEQGPSRRPAHIQRHEHKWRRKV*LPTQLW Trigger: CCAGAGCTGGGTGGGCAGTCATACTTTTCTTCTCCA...TTTATGTTCATGTCTCTGAATGTGAGCAGGTCTCCTGCTTGGTCCTTGCTCAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022867.5 ENSMUST00000226437.2 |
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| 3UTR-3UTR GCA 90 bp | TTGCAAGAAAAGAGTGTGAACACCTTTTCCCAAACATACATGGTGGCTCTGTTGGAAGAAAAGTATGACTaGCCACCCAGCTCTGGGGCC | + |
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Preference number: 2 (lower is better) Translates to: LQEKSVNTFSQTYMVALLEEKYD*PPSSGA Trigger: GGCCCCAGAGCTGGGTGGGCAGTCATACTTTTCTTC...CAACAGAGCCACCATGTATGTTTGGGAAAAGGTGTTCACACTCTTTTCTTGCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000022867.5 ENSMUST00000226437.2 |
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| 3UTR-3UTR TCA 90 bp | GAGAAAGACTCTGGGAACTCACCACACTCCACTCCTACAGCCTCGCTAGTCAGTAGTTCATCATGGAAGTaGAACCACAGGATAATTCAT | + |
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Preference number: 2 (lower is better) Translates to: EKDSGNSPHSTPTASLVSSSSWK*NHRIIH Trigger: ATGAATTATCCTGTGGTTTCACTTCCATGATGAACT...ACTGACTAGCGAGGCTGTAGGAGTGGAGTGTGGTGAGTTCCCAGAGTCTTTCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000022867.5 ENSMUST00000226437.2 ENSMUST00000228547.2 |
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| 3UTR CAA 90 bp | GCAGCTGTTGCCCTCACTGTTGCCTATTACCTTGGGGGTCTTTATTaGGCCCAAAGAAAATCCTTGACCAGCAAATTCAGAGTATCATTG | + |
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Preference number: 2 (lower is better) Translates to: AAVALTVAYYLGGLY*AQRKSLTSKFRVSL Trigger: CAATGATACTCTGAATTTGCTGGTCAAGGATTTTCTTTGGGCCAAATAAAGACCCCCAAGGTAATAGGCAACAGTGAGGGCAACAGCTGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000022867.5 ENSMUST00000226437.2 |
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| 3UTR CAA 90 bp | TGGATGCAGACAAACTTTAATTGCAAAGCCTTTGTGTACAGCACATaGAGCAAGGACCAAGCAGGAGACCTGCTCACATTCAGAGACATG | + |
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Preference number: 2 (lower is better) Translates to: WMQTNFNCKAFVYST*SKDQAGDLLTFRDM Trigger: CATGTCTCTGAATGTGAGCAGGTCTCCTGCTTGGTCCTTGCTCAATGTGCTGTACACAAAGGCTTTGCAATTAAAGTTTGTCTGCATCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022867.5 |
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| 3UTR-3UTR GCA 90 bp | ATTGAATTCAGGGATAGTAGGGGAATTCTTATATCACATATGGAAGGGCTCCTAGCTAAGGGCTCAAACTaGTGCTCTCAGCTCTTCCGC | + |
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Preference number: 2 (lower is better) Translates to: IEFRDSRGILISHMEGLLAKGSN*CSQLFR Trigger: GCGGAAGAGCTGAGAGCAGCAGTTTGAGCCCTTAGC...TAGGAGCCCTTCCATATGTGATATAAGAATTCCCCTACTATCCCTGAATTCAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022867.5 ENSMUST00000226437.2 |
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| 3UTR-3UTR TCA 90 bp | CAGACAAACTTTAATTGCAAAGCCTTTGTGTACAGCACATTGAGCAAGGACCAAAAGGAAAAGGGAGTGTaGGTCTCTCAGTGCAGAGCA | + |
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Preference number: 2 (lower is better) Translates to: QTNFNCKAFVYSTLSKDQKEKGV*VSQCRA Trigger: TGCTCTGCACTGAGAGACTCACACTCCCTTTTCCTT...TTGGTCCTTGCTCAATGTGCTGTACACAAAGGCTTTGCAATTAAAGTTTGTCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022867.5 ENSMUST00000226437.2 |
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| 3UTR-3UTR TCA 90 bp | GAGCAAGGACCAAGCAGGAGACCTGCTCACATTCAGAGACATGAACATAAACGTACCTCCTTATCTTTCTaGAGACTGCTTGACATTTTA | + |
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Preference number: 2 (lower is better) Translates to: EQGPSRRPAHIQRHEHKRTSLSF*RLLDIL Trigger: TAAAATGTCAAGCAGTCTTCAGAAAGATAAGGAGGT...ACGTTTATGTTCATGTCTCTGAATGTGAGCAGGTCTCCTGCTTGGTCCTTGCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022867.5 ENSMUST00000226437.2 |
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| 3UTR-3UTR TCA 90 bp | CACATTGAGCAAGGACCAAGCAGGAGACCTGCTCACATTCAGAGACATGAACATACCTCCTTATCTTTCTaGAGACTGCTTGACATTTTA | + |
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Preference number: 2 (lower is better) Translates to: HIEQGPSRRPAHIQRHEHTSLSF*RLLDIL Trigger: TAAAATGTCAAGCAGTCTTCAGAAAGATAAGGAGGT...ATGTTCATGTCTCTGAATGTGAGCAGGTCTCCTGCTTGGTCCTTGCTCAATGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022867.5 ENSMUST00000226437.2 |
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| 3UTR-3UTR TCA 90 bp | AAAATCCTTGACCAGCAAATTCAGAGTATCATTGAATTCAGGGATAGTAGGGGAAACAGAAGAACGGGATaGTCCAGGCAGCATGTTGCT | + |
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Preference number: 2 (lower is better) Translates to: KILDQQIQSIIEFRDSRGNRRTG*SRQHVA Trigger: AGCAACATGCTGCCTGGATCATCCCGTTCTTCTGTT...TCCCCTACTATCCCTGAATTCAATGATACTCTGAATTTGCTGGTCAAGGATTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000226437.2 |
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| 3UTR CAA 90 bp | GTTGCCTATTACCTTGGGGGTCTTTATTTGGCCCAAAGAAAATCCTaGACCAGCAAATTCAGAGTATCATTGAATTCAGGGATAGTAGGG | + |
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Preference number: 2 (lower is better) Translates to: VAYYLGGLYLAQRKS*TSKFRVSLNSGIVG Trigger: CCCTACTATCCCTGAATTCAATGATACTCTGAATTTGCTGGTCAAGGATTTTCTTTGGGCCAAATAAAGACCCCCAAGGTAATAGGCAAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000022867.5 ENSMUST00000226437.2 |
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| 3UTR-3UTR TCA 90 bp | ATTGAGCAAGGACCAAGCAGGAGACCTGCTCACATTCAGAGACATGAACATAAACCCAAAGAAAATCCTTaGCCAGCAAATTCAGAGTAT | + |
|
Preference number: 2 (lower is better) Translates to: IEQGPSRRPAHIQRHEHKPKENP*PANSEY Trigger: ATACTCTGAATTTGCTGGTCAAGGATTTTCTTTGGG...TTTATGTTCATGTCTCTGAATGTGAGCAGGTCTCCTGCTTGGTCCTTGCTCAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022867.5 ENSMUST00000226437.2 |
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| 3UTR-3UTR TCA 90 bp | TGTACCTTGCAAGAAAAGAGTGTGAACACCTTTTCCCAAACATACATGGTGGCTAGTTCATCATGGAAGTaGAACCACAGGATAATTCAT | + |
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Preference number: 2 (lower is better) Translates to: CTLQEKSVNTFSQTYMVASSSWK*NHRIIH Trigger: ATGAATTATCCTGTGGTTTCACTTCCATGATGAACT...AGCCACCATGTATGTTTGGGAAAAGGTGTTCACACTCTTTTCTTGCAAGGTACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022867.5 ENSMUST00000226437.2 |
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| 3UTR-3UTR CCA 90 bp | GCCTATTACCTTGGGGGTCTTTATTTGGCCCAAAGAAAATCCTTGACCAGCAAACTAAATTGTAAAATGTaGCTCAGAGAGTTCATCATG | + |
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Preference number: 2 (lower is better) Translates to: AYYLGGLYLAQRKSLTSKLNCKM*LREFIM Trigger: CATGATGAACTCTCTGAGCCACATTTTACAATTTAG...TTTGCTGGTCAAGGATTTTCTTTGGGCCAAATAAAGACCCCCAAGGTAATAGGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000022867.5 ENSMUST00000226437.2 |
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| 3UTR-3UTR TCA 90 bp | TGGATGCAGACAAACTTTAATTGCAAAGCCTTTGTGTACAGCACATTGAGCAAGAGTTCATCATGGAAGTaGAACCACAGGATAATTCAT | + |
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Preference number: 2 (lower is better) Translates to: WMQTNFNCKAFVYSTLSKSSSWK*NHRIIH Trigger: ATGAATTATCCTGTGGTTTCACTTCCATGATGAACT...CTTGCTCAATGTGCTGTACACAAAGGCTTTGCAATTAAAGTTTGTCTGCATCCA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022867.5 |
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| 3UTR-3UTR GCA 90 bp | ATTCAAAGCAGGTTGTACCTTGCAAGAAAAGAGTGTGAACACCTTTTCCCAAACCAGACAAACTTTAATTaGAAAGCCTTTGTGTACAGC | + |
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Preference number: 2 (lower is better) Translates to: IQSRLYLARKECEHLFPNQTNFN*KAFVYS Trigger: GCTGTACACAAAGGCTTTGCAATTAAAGTTTGTCTG...GTTTGGGAAAAGGTGTTCACACTCTTTTCTTGCAAGGTACAACCTGCTTTGAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022867.5 ENSMUST00000226437.2 |
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| 3UTR CAA 90 bp | TATTTGGCCCAAAGAAAATCCTTGACCAGCAAATTCAGAGTATCATaGAATTCAGGGATAGTAGGGGAATTCTTATATCACATATGGAAG | + |
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Preference number: 2 (lower is better) Translates to: YLAQRKSLTSKFRVS*NSGIVGEFLYHIWK Trigger: CTTCCATATGTGATATAAGAATTCCCCTACTATCCCTGAATTCAATGATACTCTGAATTTGCTGGTCAAGGATTTTCTTTGGGCCAAATA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022867.5 ENSMUST00000226437.2 |
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| 3UTR-3UTR CCA 90 bp | GTATCATTGAATTCAGGGATAGTAGGGGAATTCTTATATCACATATGGAAGGGCCTAAATTGTAAAATGTaGCTCAGAGAGTTCATCATG | + |
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Preference number: 2 (lower is better) Translates to: VSLNSGIVGEFLYHIWKGLNCKM*LREFIM Trigger: CATGATGAACTCTCTGAGCCACATTTTACAATTTAG...GCCCTTCCATATGTGATATAAGAATTCCCCTACTATCCCTGAATTCAATGATAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022867.5 ENSMUST00000226437.2 |
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| 3UTR CCA 72 bp | TCTTCCGCACCAGGTTCAGGCGGACACGTAAGGTGGTaGTGGTTCCTTGGCAGTGCTAGGCACAGCAGTAGC | + |
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Preference number: 3 (lower is better) Translates to: SSAPGSGGHVRW*WFLGSARHSSS Trigger: GCTACTGCTGTGCCTAGCACTGCCAAGGAACCACCACCACCTTACGTGTCCGCCTGAACCTGGTGCGGAAGA 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226437.2 |
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| 3UTR CCA 72 bp | AGCTCTTCCGCACCAGGTTCAGGCGGACACGTAAGGTaGTGGTGGTTCCTTGGCAGTGCTAGGCACAGCAGT | + |
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Preference number: 3 (lower is better) Translates to: SSSAPGSGGHVR*WWFLGSARHSS Trigger: ACTGCTGTGCCTAGCACTGCCAAGGAACCACCACCACCTTACGTGTCCGCCTGAACCTGGTGCGGAAGAGCT 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226437.2 |
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| 3UTR-3UTR CAA 90 bp | AAAGCCTTTGTGTACAGCACATTGAGCAAGGACCAAGCAGGAGACCTGCTCACAGGTGGTGGTGGTTCCTaGGCAGTGCTAGGCACAGCA | + |
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Preference number: 3 (lower is better) Translates to: KAFVYSTLSKDQAGDLLTGGGGS*AVLGTA Trigger: TGCTGTGCCTAGCACTGCCAAGGAACCACCACCACC...TGTGAGCAGGTCTCCTGCTTGGTCCTTGCTCAATGTGCTGTACACAAAGGCTTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226437.2 |
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| 3UTR GCA 72 bp | ACCATAGCCCAAAACAACAGGCAGCCCGGCAGCTGTTaGCCTCACTGTTGCCTATTACCTTGGGGGTCTTTA | + |
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Preference number: 3 (lower is better) Translates to: TIAQNNRQPGSC*PHCCLLPWGSL Trigger: TAAAGACCCCCAAGGTAATAGGCAACAGTGAGGGCAACAGCTGCCGGGCTGCCTGTTGTTTTGGGCTATGGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000022867.5 ENSMUST00000226437.2 |
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| 3UTR CCA 72 bp | CCCGGCAGCTGTTGCCCTCACTGTTGCCTATTACCTTaGGGGTCTTTATTTGGCCCAAAGAAAATCCTTGAC | + |
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Preference number: 3 (lower is better) Translates to: PGSCCPHCCLLP*GSLFGPKKILD Trigger: GTCAAGGATTTTCTTTGGGCCAAATAAAGACCCCCAAGGTAATAGGCAACAGTGAGGGCAACAGCTGCCGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022867.5 ENSMUST00000226437.2 |
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| 3UTR-3UTR CAA 90 bp | AAAGCCTTTGTGTACAGCACATTGAGCAAGGACCAAGCAGGAGACCTGCTCACATACATGGTGGCTCTGTaGGTGCAGGTAACCAAGGAA | + |
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Preference number: 3 (lower is better) Translates to: KAFVYSTLSKDQAGDLLTYMVAL*VQVTKE Trigger: TTCCTTGGTTACCTGCACCAACAGAGCCACCATGTA...TGTGAGCAGGTCTCCTGCTTGGTCCTTGCTCAATGTGCTGTACACAAAGGCTTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022867.5 ENSMUST00000226437.2 |
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| 3UTR-3UTR CAA 90 bp | AAAGCCTTTGTGTACAGCACATTGAGCAAGGACCAAGCAGGAGACCTGCTCACAGCCCAAAGAAAATCCTaGACCAGCAAATTCAGAGTA | + |
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Preference number: 3 (lower is better) Translates to: KAFVYSTLSKDQAGDLLTAQRKS*TSKFRV Trigger: TACTCTGAATTTGCTGGTCAAGGATTTTCTTTGGGC...TGTGAGCAGGTCTCCTGCTTGGTCCTTGCTCAATGTGCTGTACACAAAGGCTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022867.5 ENSMUST00000226437.2 |
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| 3UTR-3UTR CAA 90 bp | TGTACCTTGCAAGAAAAGAGTGTGAACACCTTTTCCCAAACATACATGGTGGCTTTTGTGTACAGCACATaGAGCAAGGACCAAGCAGGA | + |
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Preference number: 3 (lower is better) Translates to: CTLQEKSVNTFSQTYMVAFVYST*SKDQAG Trigger: TCCTGCTTGGTCCTTGCTCAATGTGCTGTACACAAA...AGCCACCATGTATGTTTGGGAAAAGGTGTTCACACTCTTTTCTTGCAAGGTACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000022867.5 ENSMUST00000226437.2 |
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| 3UTR TCA 72 bp | CAAACTTTAATTGCAAAGCCTTTGTGTACAGCACATTaGGCAAGGACCAAGCAGGAGACCTGCTCACATTCA | + |
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Preference number: 3 (lower is better) Translates to: QTLIAKPLCTAH*ARTKQETCSHS Trigger: TGAATGTGAGCAGGTCTCCTGCTTGGTCCTTGCTCAATGTGCTGTACACAAAGGCTTTGCAATTAAAGTTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022867.5 ENSMUST00000226437.2 |
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| 3UTR TCA 72 bp | ATTGTAAAATGTGGCTCAGAGAGTTCATCATGGAAGTaGAACCACAGGATAATTCATGCAGCTAAGGGCTCA | + |
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Preference number: 3 (lower is better) Translates to: IVKCGSESSSWK*NHRIIHAAKGS Trigger: TGAGCCCTTAGCTGCATGAATTATCCTGTGGTTTCACTTCCATGATGAACTCTCTGAGCCACATTTTACAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000022867.5 ENSMUST00000226437.2 ENSMUST00000228547.2 |
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| 3UTR-3UTR CAA 90 bp | CAAGCAGGAGACCTGCTCACATTCAGAGACATGAACATAAACGTCTTTCACAATGAAATTCAAAGCAGGTaGTACCTTGCAAGAAAAGAG | + |
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Preference number: 3 (lower is better) Translates to: QAGDLLTFRDMNINVFHNEIQSR*YLARKE Trigger: CTCTTTTCTTGCAAGGTACAACCTGCTTTGAATTTC...ATTGTGAAAGACGTTTATGTTCATGTCTCTGAATGTGAGCAGGTCTCCTGCTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022867.5 ENSMUST00000226437.2 |
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| 3UTR-3UTR CAA 90 bp | AAAATCCTTGACCAGCAAATTCAGAGTATCATTGAATTCAGGGATAGTAGGGGAGCCCAAAGAAAATCCTaGACCAGCAAATTCAGAGTA | + |
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Preference number: 3 (lower is better) Translates to: KILDQQIQSIIEFRDSRGAQRKS*TSKFRV Trigger: TACTCTGAATTTGCTGGTCAAGGATTTTCTTTGGGC...TCCCCTACTATCCCTGAATTCAATGATACTCTGAATTTGCTGGTCAAGGATTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000022867.5 ENSMUST00000226437.2 |
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| 3UTR-3UTR CAA 90 bp | CAGACAAACTTTAATTGCAAAGCCTTTGTGTACAGCACATTGAGCAAGGACCAAAAATTCAGAGTATCATaGAATTCAGGGATAGTAGGG | + |
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Preference number: 3 (lower is better) Translates to: QTNFNCKAFVYSTLSKDQKFRVS*NSGIVG Trigger: CCCTACTATCCCTGAATTCAATGATACTCTGAATTT...TTGGTCCTTGCTCAATGTGCTGTACACAAAGGCTTTGCAATTAAAGTTTGTCTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000022867.5 ENSMUST00000226437.2 |
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| 3UTR-3UTR CAA 90 bp | AAAATCCTTGACCAGCAAATTCAGAGTATCATTGAATTCAGGGATAGTAGGGGAAAATTCAGAGTATCATaGAATTCAGGGATAGTAGGG | + |
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Preference number: 3 (lower is better) Translates to: KILDQQIQSIIEFRDSRGKFRVS*NSGIVG Trigger: CCCTACTATCCCTGAATTCAATGATACTCTGAATTT...TCCCCTACTATCCCTGAATTCAATGATACTCTGAATTTGCTGGTCAAGGATTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000022867.5 ENSMUST00000226437.2 |
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| CDS-3UTR TCA 90 bp | GAAAGACTCTGGGAACTCACCACACTCCACTCCTACAGCCTCGCTAGTCAGTGCAGGAGTTCCTGCCGTTaGTGTACCTGTAGCAGCTCC | + |
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Preference number: 4 (lower is better) Translates to: ERLWELTTLHSYSLASQCRSSCR*CTCSSS Trigger: GGAGCTGCTACAGGTACATCAACGGCAGGAACTCCT...GCACTGACTAGCGAGGCTGTAGGAGTGGAGTGTGGTGAGTTCCCAGAGTCTTTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022867.5 ENSMUST00000228547.2 |
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| CDS-3UTR CCA 90 bp | GAGAAAGACTCTGGGAACTCACCACACTCCACTCCTACAGCCTCGCTAGTCAGTCACGTAAGGTGGTGGTaGTTCCTTGGCAGTGCTAGG | + |
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Preference number: 4 (lower is better) Translates to: EKDSGNSPHSTPTASLVSHVRWW*FLGSAR Trigger: CCTAGCACTGCCAAGGAACCACCACCACCTTACGTG...ACTGACTAGCGAGGCTGTAGGAGTGGAGTGTGGTGAGTTCCCAGAGTCTTTCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022867.5 ENSMUST00000228547.2 |
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| CDS-3UTR CCA 90 bp | ATAATTCATGCAGCTAAGGGCTCAAACTGCTGCTCTCAGCTCTTCCGCACCAGGGGCGGACACGTAAGGTaGTGGTGGTTCCTTGGCAGT | + |
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Preference number: 4 (lower is better) Translates to: IIHAAKGSNCCSQLFRTRGGHVR*WWFLGS Trigger: ACTGCCAAGGAACCACCACCACCTTACGTGTCCGCC...CCTGGTGCGGAAGAGCTGAGAGCAGCAGTTTGAGCCCTTAGCTGCATGAATTAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022867.5 ENSMUST00000228547.2 |
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| 3UTR CAA 72 bp | AGGTATAAGCCAGCCCGGGGACCAACGTCTGTAGTTTaGAGAAAGACTCTGGGAACTCACCACACTCCACTC | + |
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Preference number: 4 (lower is better) Translates to: RYKPARGPTSVV*RKTLGTHHTPL Trigger: GAGTGGAGTGTGGTGAGTTCCCAGAGTCTTTCTCAAAACTACAGACGTTGGTCCCCGGGCTGGCTTATACCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022867.5 ENSMUST00000226437.2 |
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| 3UTR CAA 72 bp | AAACAACAGGCAGCCCGGCAGCTGTTGCCCTCACTGTaGCCTATTACCTTGGGGGTCTTTATTTGGCCCAAA | + |
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Preference number: 4 (lower is better) Translates to: KQQAARQLLPSL*PITLGVFIWPK Trigger: TTTGGGCCAAATAAAGACCCCCAAGGTAATAGGCAACAGTGAGGGCAACAGCTGCCGGGCTGCCTGTTGTTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000022867.5 ENSMUST00000226437.2 |
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| CDS-3UTR GCA 90 bp | GAGAAAGACTCTGGGAACTCACCACACTCCACTCCTACAGCCTCGCTAGTCAGTAGCATGTTGCTTGTATaGACCGTAAGTAGCCATGGC | + |
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Preference number: 4 (lower is better) Translates to: EKDSGNSPHSTPTASLVSSMLLV*TVSSHG Trigger: GCCATGGCTACTTACGGTGCATACAAGCAACATGCT...ACTGACTAGCGAGGCTGTAGGAGTGGAGTGTGGTGAGTTCCCAGAGTCTTTCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022867.5 |
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| CDS-3UTR TCA 90 bp | TGTGTACAGCACATTGAGCAAGGACCAAGCAGGAGACCTGCTCACATTCAGAGAAACAGAAGAACGGGATaGTCCAGGCAGCATGTTGCT | + |
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Preference number: 4 (lower is better) Translates to: CVQHIEQGPSRRPAHIQRNRRTG*SRQHVA Trigger: AGCAACATGCTGCCTGGATCATCCCGTTCTTCTGTT...TCTCTGAATGTGAGCAGGTCTCCTGCTTGGTCCTTGCTCAATGTGCTGTACACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022867.5 |
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| CDS-3UTR CCA 90 bp | GTGCTTAGCTACAGGGCATGTGTCAACAGAGGCTTCAGCTTAACATCTAAATTGGGACACGTAAGGTGGTaGTGGTTCCTTGGCAGTGCT | + |
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Preference number: 4 (lower is better) Translates to: VLSYRACVNRGFSLTSKLGHVRW*WFLGSA Trigger: AGCACTGCCAAGGAACCACCACCACCTTACGTGTCC...CAATTTAGATGTTAAGCTGAAGCCTCTGTTGACACATGCCCTGTAGCTAAGCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022867.5 ENSMUST00000228547.2 |
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| CDS-3UTR CCA 90 bp | TCAGTGCTTAGCTACAGGGCATGTGTCAACAGAGGCTTCAGCTTAACATCTAAAGGACACGTAAGGTGGTaGTGGTTCCTTGGCAGTGCT | + |
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Preference number: 4 (lower is better) Translates to: SVLSYRACVNRGFSLTSKGHVRW*WFLGSA Trigger: AGCACTGCCAAGGAACCACCACCACCTTACGTGTCC...TTTAGATGTTAAGCTGAAGCCTCTGTTGACACATGCCCTGTAGCTAAGCACTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022867.5 ENSMUST00000228547.2 |
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| CDS-3UTR CCA 90 bp | GTATCATTGAATTCAGGGATAGTAGGGGAATTCTTATATCACATATGGAAGGGCCACGTAAGGTGGTGGTaGTTCCTTGGCAGTGCTAGG | + |
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Preference number: 4 (lower is better) Translates to: VSLNSGIVGEFLYHIWKGHVRWW*FLGSAR Trigger: CCTAGCACTGCCAAGGAACCACCACCACCTTACGTG...GCCCTTCCATATGTGATATAAGAATTCCCCTACTATCCCTGAATTCAATGATAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022867.5 |
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| 3UTR CAA 72 bp | GCCCTCACTGTTGCCTATTACCTTGGGGGTCTTTATTaGGCCCAAAGAAAATCCTTGACCAGCAAATTCAGA | + |
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Preference number: 4 (lower is better) Translates to: ALTVAYYLGGLY*AQRKSLTSKFR Trigger: TCTGAATTTGCTGGTCAAGGATTTTCTTTGGGCCAAATAAAGACCCCCAAGGTAATAGGCAACAGTGAGGGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000022867.5 ENSMUST00000226437.2 |
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| 3UTR CAA 72 bp | ACAAACTTTAATTGCAAAGCCTTTGTGTACAGCACATaGAGCAAGGACCAAGCAGGAGACCTGCTCACATTC | + |
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Preference number: 4 (lower is better) Translates to: TNFNCKAFVYST*SKDQAGDLLTF Trigger: GAATGTGAGCAGGTCTCCTGCTTGGTCCTTGCTCAATGTGCTGTACACAAAGGCTTTGCAATTAAAGTTTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022867.5 ENSMUST00000226437.2 |
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| CDS-3UTR TCA 90 bp | AGGTTGTACCTTGCAAGAAAAGAGTGTGAACACCTTTTCCCAAACATACATGGTTGTTGGCATCATCCATaGACTCAAACTCCCCTCCTA | + |
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Preference number: 4 (lower is better) Translates to: RLYLARKECEHLFPNIHGCWHHP*TQTPLL Trigger: TAGGAGGGGAGTTTGAGTTCATGGATGATGCCAACA...ACCATGTATGTTTGGGAAAAGGTGTTCACACTCTTTTCTTGCAAGGTACAACCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000022867.5 |
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| 3UTR CAA 72 bp | TACCTTGGGGGTCTTTATTTGGCCCAAAGAAAATCCTaGACCAGCAAATTCAGAGTATCATTGAATTCAGGG | + |
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Preference number: 4 (lower is better) Translates to: YLGGLYLAQRKS*TSKFRVSLNSG Trigger: CCCTGAATTCAATGATACTCTGAATTTGCTGGTCAAGGATTTTCTTTGGGCCAAATAAAGACCCCCAAGGTA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000022867.5 ENSMUST00000226437.2 |
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| 3UTR CAA 72 bp | CAAAGAAAATCCTTGACCAGCAAATTCAGAGTATCATaGAATTCAGGGATAGTAGGGGAATTCTTATATCAC | + |
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Preference number: 4 (lower is better) Translates to: QRKSLTSKFRVS*NSGIVGEFLYH Trigger: GTGATATAAGAATTCCCCTACTATCCCTGAATTCAATGATACTCTGAATTTGCTGGTCAAGGATTTTCTTTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022867.5 ENSMUST00000226437.2 |
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| CDS-3UTR CAA 90 bp | GAGAAAGACTCTGGGAACTCACCACACTCCACTCCTACAGCCTCGCTAGTCAGTGGTGGTGGTGGTTCCTaGGCAGTGCTAGGCACAGCA | + |
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Preference number: 5 (lower is better) Translates to: EKDSGNSPHSTPTASLVSGGGGS*AVLGTA Trigger: TGCTGTGCCTAGCACTGCCAAGGAACCACCACCACC...ACTGACTAGCGAGGCTGTAGGAGTGGAGTGTGGTGAGTTCCCAGAGTCTTTCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022867.5 ENSMUST00000228547.2 |
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| CDS-3UTR CAA 90 bp | TGGATGCAGACAAACTTTAATTGCAAAGCCTTTGTGTACAGCACATTGAGCAAGGGTGGTGGTGGTTCCTaGGCAGTGCTAGGCACAGCA | + |
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Preference number: 5 (lower is better) Translates to: WMQTNFNCKAFVYSTLSKGGGGS*AVLGTA Trigger: TGCTGTGCCTAGCACTGCCAAGGAACCACCACCACC...CTTGCTCAATGTGCTGTACACAAAGGCTTTGCAATTAAAGTTTGTCTGCATCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022867.5 |
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| CDS-3UTR CAA 90 bp | GTATCATTGAATTCAGGGATAGTAGGGGAATTCTTATATCACATATGGAAGGGCAGCAGGACCACAGCATaGATGATCAGGTACCAGACG | + |
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Preference number: 5 (lower is better) Translates to: VSLNSGIVGEFLYHIWKGSRTTA*MIRYQT Trigger: CGTCTGGTACCTGATCATCAATGCTGTGGTCCTGCT...GCCCTTCCATATGTGATATAAGAATTCCCCTACTATCCCTGAATTCAATGATAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022867.5 |
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