Pregenerated sensors for LAPTM4A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020585Ensembl transcript IDs: ENSMUST00000020909.4
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CAAACTGCTATTTCTCTCTCTCTCCTGTTTCATAGAGCTGGAAACTaGAGGTGTTATACCCAACCTATTCATCCTCAACACTGTAGTCAC | + |
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Preference number: 1 (lower is better) Translates to: QTAISLSLLFHRAGN*RCYTQPIHPQHCSH Trigger: GTGACTACAGTGTTGAGGATGAATAGGTTGGGTATAACACCTGCAGTTTCCAGCTCTATGAAACAGGAGAGAGAGAGAAATAGCAGTTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020909.4 |
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| 3UTR-3UTR TCA 90 bp | TACCCTCAGCTAAAGGCTAACAATGGCACTTGGCTCTTGCTTAATCTAGATTGTTCTATCAAACAAGTCTaGGAGGCCCGCACTGCAGCT | + |
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Preference number: 2 (lower is better) Translates to: YPQLKANNGTWLLLNLDCSIKQV*EARTAA Trigger: AGCTGCAGTGCGGGCCTCTCAGACTTGTTTGATAGA...ACAATCTAGATTAAGCAAGAGCCAAGTGCCATTGTTAGCCTTTAGCTGAGGGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020909.4 |
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| 3UTR-3UTR GCA 90 bp | TATCACAAAGATGGAAACGTACAAATGAGAAGCATGCAACCATCATCTTCCACACATAGAGCTGGAAACTaGAGGTGTTATACCCAACCT | + |
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Preference number: 2 (lower is better) Translates to: YHKDGNVQMRSMQPSSSTHRAGN*RCYTQP Trigger: AGGTTGGGTATAACACCTGCAGTTTCCAGCTCTATG...TGTGGAAGATGATGGTTGCATGCTTCTCATTTGTACGTTTCCATCTTTGTGATA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020909.4 |
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| 3UTR-3UTR CCA 90 bp | AGTCAAGTCAAACTGCTATTTCTCTCTCTCTCCTGTTTCATAGAGCTGGAAACTGCTAACAATGGCACTTaGCTCTTGCTTAATCTAGAT | + |
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Preference number: 2 (lower is better) Translates to: SQVKLLFLSLSCFIELETANNGT*LLLNLD Trigger: ATCTAGATTAAGCAAGAGCCAAGTGCCATTGTTAGC...AGTTTCCAGCTCTATGAAACAGGAGAGAGAGAGAAATAGCAGTTTGACTTGACT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020909.4 |
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| 3UTR-3UTR GCA 90 bp | TATCACAAAGATGGAAACGTACAAATGAGAAGCATGCAACCATCATCTTCCACAGTGTTTGAAAATAAATaGTCAGACAAGACAGTGTAC | + |
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Preference number: 2 (lower is better) Translates to: YHKDGNVQMRSMQPSSSTVFENK*SDKTVY Trigger: GTACACTGTCTTGTCTGAGCATTTATTTTCAAACAC...TGTGGAAGATGATGGTTGCATGCTTCTCATTTGTACGTTTCCATCTTTGTGATA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020909.4 |
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| 3UTR CCA 72 bp | CCCCCATACCCTCAGCTAAAGGCTAACAATGGCACTTaGCTCTTGCTTAATCTAGATTGTCTTCAAAAAGTC | + |
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Preference number: 3 (lower is better) Translates to: PPYPQLKANNGT*LLLNLDCLQKV Trigger: GACTTTTTGAAGACAATCTAGATTAAGCAAGAGCCAAGTGCCATTGTTAGCCTTTAGCTGAGGGTATGGGGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000020909.4 |
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| 3UTR GCA 72 bp | ATTTCTCTCTCTCTCCTGTTTCATAGAGCTGGAAACTaGAGGTGTTATACCCAACCTATTCATCCTCAACAC | + |
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Preference number: 3 (lower is better) Translates to: ISLSLLFHRAGN*RCYTQPIHPQH Trigger: GTGTTGAGGATGAATAGGTTGGGTATAACACCTGCAGTTTCCAGCTCTATGAAACAGGAGAGAGAGAGAAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020909.4 |
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| CDS-3UTR GCA 90 bp | GCCCGCACTGCAGCTTTCTGTAAAATAAACAAGACGAGAAGCTGGTATAGGCTTCAACTCCTGTGCGCCTaGGCTCTGGGCGCCCGGCGC | + |
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Preference number: 4 (lower is better) Translates to: ARTAAFCKINKTRSWYRLQLLCA*ALGARR Trigger: GCGCCGGGCGCCCAGAGCGCAGGCGCACAGGAGTTG...AAGCCTATACCAGCTTCTCGTCTTGTTTATTTTACAGAAAGCTGCAGTGCGGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020909.4 |
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| CDS-3UTR TCA 90 bp | GCCCGCACTGCAGCTTTCTGTAAAATAAACAAGACGAGAAGCTGGTATAGGCTTACCAGGTCCCCAGGATaGTCGTCCCGGTGCGGACAT | + |
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Preference number: 4 (lower is better) Translates to: ARTAAFCKINKTRSWYRLTRSPG*SSRCGH Trigger: ATGTCCGCACCGGGACGATCATCCTGGGGACCTGGT...AAGCCTATACCAGCTTCTCGTCTTGTTTATTTTACAGAAAGCTGCAGTGCGGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020909.4 |
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| CDS-3UTR CCA 90 bp | AGCGGTTTATCACAAAGATGGAAACGTACAAATGAGAAGCATGCAACCATCATCAAAGGACGCGTCTTCTaGCCCGCCCTCGGCCCGGGC | + |
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Preference number: 4 (lower is better) Translates to: SGLSQRWKRTNEKHATIIKGRVF*PALGPG Trigger: GCCCGGGCCGAGGGCGGGCCAGAAGACGCGTCCTTT...GATGATGGTTGCATGCTTCTCATTTGTACGTTTCCATCTTTGTGATAAACCGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020909.4 |
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| CDS-3UTR CCA 90 bp | AGCGGTTTATCACAAAGATGGAAACGTACAAATGAGAAGCATGCAACCATCATCGTCCCGGTGCGGACATaGCAACAGCCGCAGCACCGG | + |
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Preference number: 4 (lower is better) Translates to: SGLSQRWKRTNEKHATIIVPVRT*QQPQHR Trigger: CCGGTGCTGCGGCTGTTGCCATGTCCGCACCGGGAC...GATGATGGTTGCATGCTTCTCATTTGTACGTTTCCATCTTTGTGATAAACCGCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020909.4 |
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| CDS-3UTR TCA 90 bp | ACAAGACAGTGTACTTTCTATCAAACAAGTCTGAGAGGCCCGCACTGCAGCTTTTGGCCATCAACAGGTTaGCCACCATGTACCAGGTCC | + |
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Preference number: 4 (lower is better) Translates to: TRQCTFYQTSLRGPHCSFWPSTG*PPCTRS Trigger: GGACCTGGTACATGGTGGTCAACCTGTTGATGGCCA...AAAGCTGCAGTGCGGGCCTCTCAGACTTGTTTGATAGAAAGTACACTGTCTTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020909.4 |
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| CDS-3UTR TCA 90 bp | TACCCTCAGCTAAAGGCTAACAATGGCACTTGGCTCTTGCTTAATCTAGATTGTCGCTGCGGCTCCGTTTaGAAGTCATGGACACCATCC | + |
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Preference number: 4 (lower is better) Translates to: YPQLKANNGTWLLLNLDCRCGSV*KSWTPS Trigger: GGATGGTGTCCATGACTTTCAAACGGAGCCGCAGCG...ACAATCTAGATTAAGCAAGAGCCAAGTGCCATTGTTAGCCTTTAGCTGAGGGTA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020909.4 |
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| CDS-3UTR GCA 90 bp | ATTAAAGCGGTTTATCACAAAGATGGAAACGTACAAATGAGAAGCATGCAACCAAGCCGCAGCACCGGGTaGTGTAGAACCGGTCGCTGC | + |
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Preference number: 4 (lower is better) Translates to: IKAVYHKDGNVQMRSMQPSRSTG*CRTGRC Trigger: GCAGCGACCGGTTCTACAGCACCCGGTGCTGCGGCT...TGGTTGCATGCTTCTCATTTGTACGTTTCCATCTTTGTGATAAACCGCTTTAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020909.4 |
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| CDS-3UTR GCA 90 bp | GCCCGCACTGCAGCTTTCTGTAAAATAAACAAGACGAGAAGCTGGTATAGGCTTGCAGCTGGAGTCCAATaGCAGGAGGTCATCTTTGTA | + |
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Preference number: 4 (lower is better) Translates to: ARTAAFCKINKTRSWYRLAAGVQ*QEVIFV Trigger: TACAAAGATGACCTCCTGGCATTGGACTCCAGCTGC...AAGCCTATACCAGCTTCTCGTCTTGTTTATTTTACAGAAAGCTGCAGTGCGGGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020909.4 |
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| CDS-3UTR CCA 90 bp | ACAAGACAGTGTACTTTCTATCAAACAAGTCTGAGAGGCCCGCACTGCAGCTTTAGCTGGCATGGAATTTaGATGAGTCACCTCCACGGT | + |
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Preference number: 4 (lower is better) Translates to: TRQCTFYQTSLRGPHCSFSWHGI*MSHLHG Trigger: ACCGTGGAGGTGACTCATCCAAATTCCATGCCAGCT...AAAGCTGCAGTGCGGGCCTCTCAGACTTGTTTGATAGAAAGTACACTGTCTTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020909.4 |
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| CDS-3UTR CCA 90 bp | AGGTGTTATACCCAACCTATTCATCCTCAACACTGTAGTCACGCCCCGGAAACTCAGGTAAGGAGGTGGTaGCTCTTTCTCAGGAATCTT | + |
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Preference number: 4 (lower is better) Translates to: RCYTQPIHPQHCSHAPETQVRRW*LFLRNL Trigger: AAGATTCCTGAGAAAGAGCCACCACCTCCTTACCTG...AGTTTCCGGGGCGTGACTACAGTGTTGAGGATGAATAGGTTGGGTATAACACCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020909.4 |
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| CDS-3UTR CCA 90 bp | AGGTGTTATACCCAACCTATTCATCCTCAACACTGTAGTCACGCCCCGGAAACTGTACACGGCAATCTCTaGCACATTTCTGTTGTTGAT | + |
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Preference number: 4 (lower is better) Translates to: RCYTQPIHPQHCSHAPETVHGNL*HISVVD Trigger: ATCAACAACAGAAATGTGCCAGAGATTGCCGTGTAC...AGTTTCCGGGGCGTGACTACAGTGTTGAGGATGAATAGGTTGGGTATAACACCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020909.4 |
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| CDS-3UTR CCA 90 bp | ACAAGACAGTGTACTTTCTATCAAACAAGTCTGAGAGGCCCGCACTGCAGCTTTAGCCATTTCATAGGTTaGCAAAACATACTGTGGAGG | + |
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Preference number: 4 (lower is better) Translates to: TRQCTFYQTSLRGPHCSFSHFIG*QNILWR Trigger: CCTCCACAGTATGTTTTGCCAACCTATGAAATGGCT...AAAGCTGCAGTGCGGGCCTCTCAGACTTGTTTGATAGAAAGTACACTGTCTTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020909.4 |
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| CDS-3UTR CCA 90 bp | AATAAATGCTCAGACAAGACAGTGTACTTTCTATCAAACAAGTCTGAGAGGCCCAGGCAGGTAAGGAGGTaGTGGCTCTTTCTCAGGAAT | + |
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Preference number: 4 (lower is better) Translates to: NKCSDKTVYFLSNKSERPRQVRR*WLFLRN Trigger: ATTCCTGAGAAAGAGCCACCACCTCCTTACCTGCCT...GGGCCTCTCAGACTTGTTTGATAGAAAGTACACTGTCTTGTCTGAGCATTTATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020909.4 |
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| CDS-3UTR TCA 90 bp | ATCATCTTCCACAGTCAAGTCAAACTGCTATTTCTCTCTCTCTCCTGTTTCATACCAATGACTTCATACTaGATGTTGACAGCTGGCATG | + |
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Preference number: 4 (lower is better) Translates to: IIFHSQVKLLFLSLSCFIPMTSY*MLTAGM Trigger: CATGCCAGCTGTCAACATTCAGTATGAAGTCATTGG...TATGAAACAGGAGAGAGAGAGAAATAGCAGTTTGACTTGACTGTGGAAGATGAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020909.4 |
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| CDS-3UTR CCA 90 bp | AGCGGTTTATCACAAAGATGGAAACGTACAAATGAGAAGCATGCAACCATCATCCTGAATGTTGACAGCTaGCATGGAATTTGGATGAGT | + |
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Preference number: 4 (lower is better) Translates to: SGLSQRWKRTNEKHATIILNVDS*HGIWMS Trigger: ACTCATCCAAATTCCATGCCAGCTGTCAACATTCAG...GATGATGGTTGCATGCTTCTCATTTGTACGTTTCCATCTTTGTGATAAACCGCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020909.4 |
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| CDS-3UTR CCA 90 bp | TATCACAAAGATGGAAACGTACAAATGAGAAGCATGCAACCATCATCTTCCACAGAGGTCATCTTTGTATaGGAAATCAGGCAACTGATC | + |
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Preference number: 4 (lower is better) Translates to: YHKDGNVQMRSMQPSSSTEVIFV*EIRQLI Trigger: GATCAGTTGCCTGATTTCCCATACAAAGATGACCTC...TGTGGAAGATGATGGTTGCATGCTTCTCATTTGTACGTTTCCATCTTTGTGATA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020909.4 |
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| CDS-3UTR CCA 90 bp | ATTAAAGCGGTTTATCACAAAGATGGAAACGTACAAATGAGAAGCATGCAACCATGGCAAAACATACTGTaGAGGTGTTTCAAAGGCAGG | + |
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Preference number: 4 (lower is better) Translates to: IKAVYHKDGNVQMRSMQPWQNIL*RCFKGR Trigger: CCTGCCTTTGAAACACCTCCACAGTATGTTTTGCCA...TGGTTGCATGCTTCTCATTTGTACGTTTCCATCTTTGTGATAAACCGCTTTAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020909.4 |
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| CDS-3UTR TCA 90 bp | GGTTTATCACAAAGATGGAAACGTACAAATGAGAAGCATGCAACCATCATCTTCGCACATTTCTGTTGTTaGTGTATTTGTAGCAGTTCC | + |
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Preference number: 4 (lower is better) Translates to: GLSQRWKRTNEKHATIIFAHFCC*CICSSS Trigger: GGAACTGCTACAAATACATCAACAACAGAAATGTGC...GAAGATGATGGTTGCATGCTTCTCATTTGTACGTTTCCATCTTTGTGATAAACC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020909.4 |
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| CDS-3UTR TCA 90 bp | ATGAGCTTTATTAAAGCGGTTTATCACAAAGATGGAAACGTACAAATGAGAAGCAGCCATTCTCTCAGATaGATAGTAATTACCAATGAC | + |
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Preference number: 4 (lower is better) Translates to: MSFIKAVYHKDGNVQMRSSHSLR*IVITND Trigger: GTCATTGGTAATTACTATTCATCTGAGAGAATGGCT...GCTTCTCATTTGTACGTTTCCATCTTTGTGATAAACCGCTTTAATAAAGCTCAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020909.4 |
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| CDS GCA 90 bp | TTCTGGCCCGCCCTCGGCCCGGGCCCTTGCCAACTCCTGTGCGCCTaGGCTCTGGGCGCCCGGCGCCGCTCTCGCGGGACGTCGGCTCGG | + |
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Preference number: 5 (lower is better) Translates to: FWPALGPGPCQLLCA*ALGARRRSRGTSAR Trigger: CCGAGCCGACGTCCCGCGAGAGCGGCGCCGGGCGCCCAGAGCGCAGGCGCACAGGAGTTGGCAAGGGCCCGGGCCGAGGGCGGGCCAGAA 79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020909.4 |
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| CDS GCA 90 bp | CGCGTCTTCTGGCCCGCCCTCGGCCCGGGCCCTTGCCAACTCCTGTaGGCCTGCGCTCTGGGCGCCCGGCGCCGCTCTCGCGGGACGTCG | + |
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Preference number: 5 (lower is better) Translates to: RVFWPALGPGPCQLL*ACALGARRRSRGTS Trigger: CGACGTCCCGCGAGAGCGGCGCCGGGCGCCCAGAGCGCAGGCGCACAGGAGTTGGCAAGGGCCCGGGCCGAGGGCGGGCCAGAAGACGCG 79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020909.4 |
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| CDS GCA 90 bp | ACAGCCAAAGGACGCGTCTTCTGGCCCGCCCTCGGCCCGGGCCCTTaGCAACTCCTGTGCGCCTGCGCTCTGGGCGCCCGGCGCCGCTCT | + |
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Preference number: 5 (lower is better) Translates to: TAKGRVFWPALGPGP*QLLCACALGARRRS Trigger: AGAGCGGCGCCGGGCGCCCAGAGCGCAGGCGCACAGGAGTTGGCAAGGGCCCGGGCCGAGGGCGGGCCAGAAGACGCGTCCTTTGGCTGT 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020909.4 |
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| CDS CCA 90 bp | CCAGACGACTCTACGACGGTGTCCACAGCCAAAGGACGCGTCTTCTaGCCCGCCCTCGGCCCGGGCCCTTGCCAACTCCTGTGCGCCTGC | + |
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Preference number: 5 (lower is better) Translates to: PDDSTTVSTAKGRVF*PALGPGPCQLLCAC Trigger: GCAGGCGCACAGGAGTTGGCAAGGGCCCGGGCCGAGGGCGGGCCAGAAGACGCGTCCTTTGGCTGTGGACACCGTCGTAGAGTCGTCTGG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020909.4 |
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| CDS TCA 90 bp | AGCCGCAGCACCGGGTGCTGTAGAACCGGTCGCTGCGGCTCCGTTTaGAAGTCATGGACACCATCCGGAACCTCGCGGGCCTCGTTCTCG | + |
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Preference number: 5 (lower is better) Translates to: SRSTGCCRTGRCGSV*KSWTPSGTSRASFS Trigger: CGAGAACGAGGCCCGCGAGGTTCCGGATGGTGTCCATGACTTTCAAACGGAGCCGCAGCGACCGGTTCTACAGCACCCGGTGCTGCGGCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020909.4 |
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| CDS-3UTR CAA 90 bp | GGTTTATCACAAAGATGGAAACGTACAAATGAGAAGCATGCAACCATCATCTTCTCGCTGCGGCTCCGTTaGAAAGTCATGGACACCATC | + |
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Preference number: 5 (lower is better) Translates to: GLSQRWKRTNEKHATIIFSLRLR*KVMDTI Trigger: GATGGTGTCCATGACTTTCAAACGGAGCCGCAGCGA...GAAGATGATGGTTGCATGCTTCTCATTTGTACGTTTCCATCTTTGTGATAAACC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020909.4 |
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| CDS-3UTR CAA 90 bp | AGTCAAGTCAAACTGCTATTTCTCTCTCTCTCCTGTTTCATAGAGCTGGAAACTATGGCCATCAACAGGTaGACCACCATGTACCAGGTC | + |
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Preference number: 5 (lower is better) Translates to: SQVKLLFLSLSCFIELETMAINR*TTMYQV Trigger: GACCTGGTACATGGTGGTCAACCTGTTGATGGCCAT...AGTTTCCAGCTCTATGAAACAGGAGAGAGAGAGAAATAGCAGTTTGACTTGACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020909.4 |
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| CDS-3UTR CAA 90 bp | TTATCACAAAGATGGAAACGTACAAATGAGAAGCATGCAACCATCATCTTCCACCAGCTGGCATGGAATTaGGATGAGTCACCTCCACGG | + |
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Preference number: 5 (lower is better) Translates to: LSQRWKRTNEKHATIIFHQLAWN*DESPPR Trigger: CCGTGGAGGTGACTCATCCAAATTCCATGCCAGCTG...GTGGAAGATGATGGTTGCATGCTTCTCATTTGTACGTTTCCATCTTTGTGATAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020909.4 |
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| CDS CCA 90 bp | ATTACCAATGACTTCATACTGAATGTTGACAGCTGGCATGGAATTTaGATGAGTCACCTCCACGGTCAGCAAAATGGCCATCAACAGGTT | + |
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Preference number: 5 (lower is better) Translates to: ITNDFILNVDSWHGI*MSHLHGQQNGHQQV Trigger: AACCTGTTGATGGCCATTTTGCTGACCGTGGAGGTGACTCATCCAAATTCCATGCCAGCTGTCAACATTCAGTATGAAGTCATTGGTAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020909.4 |
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| CDS-3UTR CAA 90 bp | GGTTTATCACAAAGATGGAAACGTACAAATGAGAAGCATGCAACCATCATCTTCAATCAGCCAGCCCACTaGATAAGAAATGGCTCCATA | + |
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Preference number: 5 (lower is better) Translates to: GLSQRWKRTNEKHATIIFNQPAH*IRNGSI Trigger: TATGGAGCCATTTCTTATCAAGTGGGCTGGCTGATT...GAAGATGATGGTTGCATGCTTCTCATTTGTACGTTTCCATCTTTGTGATAAACC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020909.4 |
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| CDS-3UTR CAA 90 bp | ATGAGCTTTATTAAAGCGGTTTATCACAAAGATGGAAACGTACAAATGAGAAGCGCCAGGAGGTCATCTTaGTATGGGAAATCAGGCAAC | + |
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Preference number: 5 (lower is better) Translates to: MSFIKAVYHKDGNVQMRSARRSS*YGKSGN Trigger: GTTGCCTGATTTCCCATACAAAGATGACCTCCTGGC...GCTTCTCATTTGTACGTTTCCATCTTTGTGATAAACCGCTTTAATAAAGCTCAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020909.4 |
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| CDS-3UTR CAA 90 bp | ATGAGCTTTATTAAAGCGGTTTATCACAAAGATGGAAACGTACAAATGAGAAGCCAGCCATTTCATAGGTaGGCAAAACATACTGTGGAG | + |
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Preference number: 5 (lower is better) Translates to: MSFIKAVYHKDGNVQMRSQPFHR*AKHTVE Trigger: CTCCACAGTATGTTTTGCCAACCTATGAAATGGCTG...GCTTCTCATTTGTACGTTTCCATCTTTGTGATAAACCGCTTTAATAAAGCTCAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020909.4 |
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| CDS GCA 72 bp | GGACGCGTCTTCTGGCCCGCCCTCGGCCCGGGCCCTTaGCAACTCCTGTGCGCCTGCGCTCTGGGCGCCCGG | + |
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Preference number: 6 (lower is better) Translates to: GRVFWPALGPGP*QLLCACALGAR Trigger: CCGGGCGCCCAGAGCGCAGGCGCACAGGAGTTGGCAAGGGCCCGGGCCGAGGGCGGGCCAGAAGACGCGTCC 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020909.4 |
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| CDS CAA 72 bp | AGGACGCGTCTTCTGGCCCGCCCTCGGCCCGGGCCCTaGCCAACTCCTGTGCGCCTGCGCTCTGGGCGCCCG | + |
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Preference number: 6 (lower is better) Translates to: RTRLLARPRPGP*PTPVRLRSGRP Trigger: CGGGCGCCCAGAGCGCAGGCGCACAGGAGTTGGCAAGGGCCCGGGCCGAGGGCGGGCCAGAAGACGCGTCCT 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020909.4 |
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| CDS CCA 72 bp | TCTACGACGGTGTCCACAGCCAAAGGACGCGTCTTCTaGCCCGCCCTCGGCCCGGGCCCTTGCCAACTCCTG | + |
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Preference number: 6 (lower is better) Translates to: STTVSTAKGRVF*PALGPGPCQLL Trigger: CAGGAGTTGGCAAGGGCCCGGGCCGAGGGCGGGCCAGAAGACGCGTCCTTTGGCTGTGGACACCGTCGTAGA 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020909.4 |
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| CDS TCA 72 bp | ACCGGGTGCTGTAGAACCGGTCGCTGCGGCTCCGTTTaGAAGTCATGGACACCATCCGGAACCTCGCGGGCC | + |
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Preference number: 6 (lower is better) Translates to: TGCCRTGRCGSV*KSWTPSGTSRA Trigger: GGCCCGCGAGGTTCCGGATGGTGTCCATGACTTTCAAACGGAGCCGCAGCGACCGGTTCTACAGCACCCGGT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020909.4 |
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| CDS CCA 72 bp | GACTTCATACTGAATGTTGACAGCTGGCATGGAATTTaGATGAGTCACCTCCACGGTCAGCAAAATGGCCAT | + |
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Preference number: 6 (lower is better) Translates to: DFILNVDSWHGI*MSHLHGQQNGH Trigger: ATGGCCATTTTGCTGACCGTGGAGGTGACTCATCCAAATTCCATGCCAGCTGTCAACATTCAGTATGAAGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020909.4 |
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| CDS CCA 72 bp | GCAGCTGGAGTCCAATGCCAGGAGGTCATCTTTGTATaGGAAATCAGGCAACTGATCCAGATATTCTTTGAT | + |
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Preference number: 6 (lower is better) Translates to: AAGVQCQEVIFV*EIRQLIQIFFD Trigger: ATCAAAGAATATCTGGATCAGTTGCCTGATTTCCCATACAAAGATGACCTCCTGGCATTGGACTCCAGCTGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020909.4 |
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| CDS CCA 72 bp | GTAATTACCAATGACTTCATACTGAATGTTGACAGCTaGCATGGAATTTGGATGAGTCACCTCCACGGTCAG | + |
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Preference number: 6 (lower is better) Translates to: VITNDFILNVDS*HGIWMSHLHGQ Trigger: CTGACCGTGGAGGTGACTCATCCAAATTCCATGCCAGCTGTCAACATTCAGTATGAAGTCATTGGTAATTAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020909.4 |
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