Pregenerated sensors for LAP3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000039682Ensembl transcript IDs: ENSMUST00000046122.11, ENSMUST00000198534.2
Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ACGATGGTCTCAAACTCAGAAATCGAGCTGCCTCTGCCTCCCAAATaGTGGGATCAAAGTTCTGCACCCCATGCCTGGCCTTTGTCCATT | + |
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Preference number: 1 (lower is better) Translates to: TMVSNSEIELPLPPK*WDQSSAPHAWPLSI Trigger: AATGGACAAAGGCCAGGCATGGGGTGCAGAACTTTGATCCCAGCATTTGGGAGGCAGAGGCAGCTCGATTTCTGAGTTTGAGACCATCGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| 3UTR GCA 90 bp | AATTCACTCTGTAGACCACGATGGTCTCAAACTCAGAAATCGAGCTaGCTCTGCCTCCCAAATGCTGGGATCAAAGTTCTGCACCCCATG | + |
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Preference number: 1 (lower is better) Translates to: NSLCRPRWSQTQKSS*LCLPNAGIKVLHPM Trigger: CATGGGGTGCAGAACTTTGATCCCAGCATTTGGGAGGCAGAGGCAGCTCGATTTCTGAGTTTGAGACCATCGTGGTCTACAGAGTGAATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| 3UTR CCA 90 bp | ATGGTCTCAAACTCAGAAATCGAGCTGCCTCTGCCTCCCAAATGCTaGGATCAAAGTTCTGCACCCCATGCCTGGCCTTTGTCCATTTTT | + |
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Preference number: 1 (lower is better) Translates to: MVSNSEIELPLPPKC*DQSSAPHAWPLSIF Trigger: AAAAATGGACAAAGGCCAGGCATGGGGTGCAGAACTTTGATCCCAGCATTTGGGAGGCAGAGGCAGCTCGATTTCTGAGTTTGAGACCAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| 3UTR-3UTR GCA 90 bp | GTAGACCACGATGGTCTCAAACTCAGAAATCGAGCTGCCTCTGCCTCCCAAATGCTGGGATCAAAGTTCTaGACCCCATGCCTGGCCTTT | + |
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Preference number: 2 (lower is better) Translates to: VDHDGLKLRNRAASASQMLGSKF*TPCLAF Trigger: AAAGGCCAGGCATGGGGTGCAGAACTTTGATCCCAG...CATTTGGGAGGCAGAGGCAGCTCGATTTCTGAGTTTGAGACCATCGTGGTCTAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| 3UTR-3UTR CCA 90 bp | ACGATGGTCTCAAACTCAGAAATCGAGCTGCCTCTGCCTCCCAAATGCTGGGATTCTGCACCCCATGCCTaGCCTTTGTCCATTTTTATG | + |
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Preference number: 2 (lower is better) Translates to: TMVSNSEIELPLPPKCWDSAPHA*PLSIFM Trigger: CATAAAAATGGACAAAGGCCAGGCATGGGGTGCAGA...ATCCCAGCATTTGGGAGGCAGAGGCAGCTCGATTTCTGAGTTTGAGACCATCGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| 3UTR GCA 72 bp | TCAAACTCAGAAATCGAGCTGCCTCTGCCTCCCAAATaGTGGGATCAAAGTTCTGCACCCCATGCCTGGCCT | + |
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Preference number: 3 (lower is better) Translates to: SNSEIELPLPPK*WDQSSAPHAWP Trigger: AGGCCAGGCATGGGGTGCAGAACTTTGATCCCAGCATTTGGGAGGCAGAGGCAGCTCGATTTCTGAGTTTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| 3UTR CCA 72 bp | AACTCAGAAATCGAGCTGCCTCTGCCTCCCAAATGCTaGGATCAAAGTTCTGCACCCCATGCCTGGCCTTTG | + |
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Preference number: 3 (lower is better) Translates to: NSEIELPLPPKC*DQSSAPHAWPL Trigger: CAAAGGCCAGGCATGGGGTGCAGAACTTTGATCCCAGCATTTGGGAGGCAGAGGCAGCTCGATTTCTGAGTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| 3UTR GCA 72 bp | GCTGCCTCTGCCTCCCAAATGCTGGGATCAAAGTTCTaGACCCCATGCCTGGCCTTTGTCCATTTTTATGGA | + |
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Preference number: 3 (lower is better) Translates to: AASASQMLGSKF*TPCLAFVHFYG Trigger: TCCATAAAAATGGACAAAGGCCAGGCATGGGGTGCAGAACTTTGATCCCAGCATTTGGGAGGCAGAGGCAGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| 3UTR GCA 72 bp | TGTAGACCACGATGGTCTCAAACTCAGAAATCGAGCTaGCTCTGCCTCCCAAATGCTGGGATCAAAGTTCTG | + |
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Preference number: 3 (lower is better) Translates to: CRPRWSQTQKSS*LCLPNAGIKVL Trigger: CAGAACTTTGATCCCAGCATTTGGGAGGCAGAGGCAGCTCGATTTCTGAGTTTGAGACCATCGTGGTCTACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| 3UTR GCA 72 bp | GCCTCCCAAATGCTGGGATCAAAGTTCTGCACCCCATaGCTGGCCTTTGTCCATTTTTATGGACTTAAGATT | + |
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Preference number: 3 (lower is better) Translates to: ASQMLGSKFCTP*LAFVHFYGLKI Trigger: AATCTTAAGTCCATAAAAATGGACAAAGGCCAGGCATGGGGTGCAGAACTTTGATCCCAGCATTTGGGAGGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| 3UTR CCA 72 bp | CCCAAATGCTGGGATCAAAGTTCTGCACCCCATGCCTaGCCTTTGTCCATTTTTATGGACTTAAGATTTCCC | + |
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Preference number: 3 (lower is better) Translates to: PKCWDQSSAPHA*PLSIFMDLRFP Trigger: GGGAAATCTTAAGTCCATAAAAATGGACAAAGGCCAGGCATGGGGTGCAGAACTTTGATCCCAGCATTTGGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| CDS-3UTR TCA 90 bp | GTAGACCACGATGGTCTCAAACTCAGAAATCGAGCTGCCTCTGCCTCCCAAATGGTGCATCGGCCAGGATaGGCCTCCCCTCGGCGTCAG | + |
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Preference number: 4 (lower is better) Translates to: VDHDGLKLRNRAASASQMVHRPG*ASPRRQ Trigger: CTGACGCCGAGGGGAGGCTCATCCTGGCCGATGCAC...CATTTGGGAGGCAGAGGCAGCTCGATTTCTGAGTTTGAGACCATCGTGGTCTAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| CDS-3UTR GCA 90 bp | TCTGCCTCCCAAATGCTGGGATCAAAGTTCTGCACCCCATGCCTGGCCTTTGTCGGTCTTGGACCTGCCTaGATCCCGCTGCAACAGCAG | + |
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Preference number: 4 (lower is better) Translates to: SASQMLGSKFCTPCLAFVGLGPA*IPLQQQ Trigger: CTGCTGTTGCAGCGGGATGCAGGCAGGTCCAAGACC...GACAAAGGCCAGGCATGGGGTGCAGAACTTTGATCCCAGCATTTGGGAGGCAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| CDS-3UTR CCA 90 bp | GCCTCCCAAATGCTGGGATCAAAGTTCTGCACCCCATGCCTGGCCTTTGTCCATTCGTCATGTCTGCGGTaGACAGACCCCGATCCCAGA | + |
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Preference number: 4 (lower is better) Translates to: ASQMLGSKFCTPCLAFVHSSCLR*TDPDPR Trigger: TCTGGGATCGGGGTCTGTCCACCGCAGACATGACGA...ATGGACAAAGGCCAGGCATGGGGTGCAGAACTTTGATCCCAGCATTTGGGAGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| CDS-3UTR CCA 90 bp | AATCGAGCTGCCTCTGCCTCCCAAATGCTGGGATCAAAGTTCTGCACCCCATGCGTGCCTCGGTTGCATTaGGGCTGCCCATGTAGTGGA | + |
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Preference number: 4 (lower is better) Translates to: NRAASASQMLGSKFCTPCVPRLH*GCPCSG Trigger: TCCACTACATGGGCAGCCCCAATGCAACCGAGGCAC...GCATGGGGTGCAGAACTTTGATCCCAGCATTTGGGAGGCAGAGGCAGCTCGATT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| CDS-3UTR CCA 90 bp | AGACCACGATGGTCTCAAACTCAGAAATCGAGCTGCCTCTGCCTCCCAAATGCTAGATCACCGCTTCCGTaGAGCTTCGCCGACACAGCC | + |
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Preference number: 4 (lower is better) Translates to: RPRWSQTQKSSCLCLPNARSPLP*SFADTA Trigger: GGCTGTGTCGGCGAAGCTCCACGGAAGCGGTGATCT...AGCATTTGGGAGGCAGAGGCAGCTCGATTTCTGAGTTTGAGACCATCGTGGTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| CDS-3UTR CCA 90 bp | GCCTCCCAAATGCTGGGATCAAAGTTCTGCACCCCATGCCTGGCCTTTGTCCATCCAGGGCTACATCCATaGCACCTGTTAAGGTGGCAG | + |
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Preference number: 4 (lower is better) Translates to: ASQMLGSKFCTPCLAFVHPGLHP*HLLRWQ Trigger: CTGCCACCTTAACAGGTGCCATGGATGTAGCCCTGG...ATGGACAAAGGCCAGGCATGGGGTGCAGAACTTTGATCCCAGCATTTGGGAGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| CDS-3UTR GCA 90 bp | AGACCACGATGGTCTCAAACTCAGAAATCGAGCTGCCTCTGCCTCCCAAATGCTTCCAGGTCTTGGACCTaGCTGCATCCCGCTGCAACA | + |
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Preference number: 4 (lower is better) Translates to: RPRWSQTQKSSCLCLPNASRSWT*LHPAAT Trigger: TGTTGCAGCGGGATGCAGGCAGGTCCAAGACCTGGA...AGCATTTGGGAGGCAGAGGCAGCTCGATTTCTGAGTTTGAGACCATCGTGGTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| CDS-3UTR GCA 90 bp | GTAGACCACGATGGTCTCAAACTCAGAAATCGAGCTGCCTCTGCCTCCCAAATGCACAAACACCAGGGGTaGCTCGGTTGCATTGGGGCT | + |
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Preference number: 4 (lower is better) Translates to: VDHDGLKLRNRAASASQMHKHQG*LGCIGA Trigger: AGCCCCAATGCAACCGAGGCACCCCTGGTGTTTGTG...CATTTGGGAGGCAGAGGCAGCTCGATTTCTGAGTTTGAGACCATCGTGGTCTAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| CDS-3UTR CCA 90 bp | TCCCAAATGCTGGGATCAAAGTTCTGCACCCCATGCCTGGCCTTTGTCCATTTTCGACCACCACCACGCTaGGGAAGTCCTGATGCAGAC | + |
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Preference number: 4 (lower is better) Translates to: SQMLGSKFCTPCLAFVHFRPPPR*GSPDAD Trigger: GTCTGCATCAGGACTTCCCCAGCGTGGTGGTGGTCG...AAAATGGACAAAGGCCAGGCATGGGGTGCAGAACTTTGATCCCAGCATTTGGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| CDS-3UTR GCA 90 bp | ACTCAGAAATCGAGCTGCCTCTGCCTCCCAAATGCTGGGATCAAAGTTCTGCACAAGCACAGCTCCTTCTaGAGCAGCTTGCGCATCTCC | + |
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Preference number: 4 (lower is better) Translates to: TQKSSCLCLPNAGIKVLHKHSSF*SSLRIS Trigger: GGAGATGCGCAAGCTGCTGCAGAAGGAGCTGTGCTT...GTGCAGAACTTTGATCCCAGCATTTGGGAGGCAGAGGCAGCTCGATTTCTGAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| CDS-3UTR GCA 90 bp | TCTGCCTCCCAAATGCTGGGATCAAAGTTCTGCACCCCATGCCTGGCCTTTGTCCGAGCATATTGTTGCTaGTCCTCCCATATCAGCCCT | + |
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Preference number: 4 (lower is better) Translates to: SASQMLGSKFCTPCLAFVRAYCC*SSHISP Trigger: AGGGCTGATATGGGAGGAGCAGCAACAATATGCTCG...GACAAAGGCCAGGCATGGGGTGCAGAACTTTGATCCCAGCATTTGGGAGGCAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| CDS-3UTR CCA 90 bp | AATCGAGCTGCCTCTGCCTCCCAAATGCTGGGATCAAAGTTCTGCACCCCATGCTCGTGCCAGTTTTCCTaGTCATCAACTCCAGCCGAT | + |
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Preference number: 4 (lower is better) Translates to: NRAASASQMLGSKFCTPCSCQFS*SSTPAD Trigger: ATCGGCTGGAGTTGATGACCAGGAAAACTGGCACGA...GCATGGGGTGCAGAACTTTGATCCCAGCATTTGGGAGGCAGAGGCAGCTCGATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| CDS-3UTR GCA 90 bp | GCCTCCCAAATGCTGGGATCAAAGTTCTGCACCCCATGCCTGGCCTTTGTCCATGCCACCTTCTTCTTCTaGTTCAGGTCATCGTACTCA | + |
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Preference number: 4 (lower is better) Translates to: ASQMLGSKFCTPCLAFVHATFFF*FRSSYS Trigger: TGAGTACGATGACCTGAAGCAGAAGAAGAAGGTGGC...ATGGACAAAGGCCAGGCATGGGGTGCAGAACTTTGATCCCAGCATTTGGGAGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| CDS-3UTR GCA 90 bp | ACGATGGTCTCAAACTCAGAAATCGAGCTGCCTCTGCCTCCCAAATGCTGGGATGGTTCTGGTTTTGCCTaGTTTGAGAGGAGGTCCAGA | + |
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Preference number: 4 (lower is better) Translates to: TMVSNSEIELPLPPKCWDGSGFA*FERRSR Trigger: TCTGGACCTCCTCTCAAAGCAGGCAAAACCAGAACC...ATCCCAGCATTTGGGAGGCAGAGGCAGCTCGATTTCTGAGTTTGAGACCATCGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| CDS-3UTR CCA 90 bp | ACTCAGAAATCGAGCTGCCTCTGCCTCCCAAATGCTGGGATCAAAGTTCTGCACTTGCCGCAGACACAATaGCCGAGCATATTGTTGCTG | + |
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Preference number: 4 (lower is better) Translates to: TQKSSCLCLPNAGIKVLHLPQTQ*PSILLL Trigger: CAGCAACAATATGCTCGGCCATTGTGTCTGCGGCAA...GTGCAGAACTTTGATCCCAGCATTTGGGAGGCAGAGGCAGCTCGATTTCTGAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| CDS-3UTR CCA 90 bp | GCCTCCCAAATGCTGGGATCAAAGTTCTGCACCCCATGCCTGGCCTTTGTCCATTCAGTGTTATCAACCTaGATGGTCTTCCCATTCCTG | + |
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Preference number: 4 (lower is better) Translates to: ASQMLGSKFCTPCLAFVHSVLST*MVFPFL Trigger: CAGGAATGGGAAGACCATCCAGGTTGATAACACTGA...ATGGACAAAGGCCAGGCATGGGGTGCAGAACTTTGATCCCAGCATTTGGGAGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| CDS-3UTR TCA 90 bp | AGACCACGATGGTCTCAAACTCAGAAATCGAGCTGCCTCTGCCTCCCAAATGCTTGGTTTTGCCTGCTTTaGGAGGAGGTCCAGATATGT | + |
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Preference number: 4 (lower is better) Translates to: RPRWSQTQKSSCLCLPNAWFCLL*EEVQIC Trigger: ACATATCTGGACCTCCTCTCAAAGCAGGCAAAACCA...AGCATTTGGGAGGCAGAGGCAGCTCGATTTCTGAGTTTGAGACCATCGTGGTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| CDS-3UTR TCA 90 bp | CCCAAATGCTGGGATCAAAGTTCTGCACCCCATGCCTGGCCTTTGTCCATTTTTCCATATCAGCCCTCATaGGGTCCATGTTTGCAGAAG | + |
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Preference number: 4 (lower is better) Translates to: PKCWDQSSAPHAWPLSIFPYQPS*GPCLQK Trigger: CTTCTGCAAACATGGACCTCATGAGGGCTGATATGG...AAAAATGGACAAAGGCCAGGCATGGGGTGCAGAACTTTGATCCCAGCATTTGGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| CDS-3UTR CCA 90 bp | AGACCACGATGGTCTCAAACTCAGAAATCGAGCTGCCTCTGCCTCCCAAATGCTTTCAGCGAATCTGGTTaGTGTCATCTCATTGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: RPRWSQTQKSSCLCLPNAFSESG*CHLIGW Trigger: CCAGCCAATGAGATGACACCAACCAGATTCGCTGAA...AGCATTTGGGAGGCAGAGGCAGCTCGATTTCTGAGTTTGAGACCATCGTGGTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| CDS-3UTR CCA 90 bp | GTAGACCACGATGGTCTCAAACTCAGAAATCGAGCTGCCTCTGCCTCCCAAATGGTTCTTCAGACCCCTTaGCTACACTTAGGAACGAAC | + |
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Preference number: 4 (lower is better) Translates to: VDHDGLKLRNRAASASQMVLQTP*LHLGTN Trigger: GTTCGTTCCTAAGTGTAGCCAAGGGGTCTGAAGAAC...CATTTGGGAGGCAGAGGCAGCTCGATTTCTGAGTTTGAGACCATCGTGGTCTAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| CDS-3UTR CCA 90 bp | TCCCAAATGCTGGGATCAAAGTTCTGCACCCCATGCCTGGCCTTTGTCCATTTTTTCCAAGAAGACTGGTaGTTCTTCAGACCCCTTGGC | + |
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Preference number: 4 (lower is better) Translates to: SQMLGSKFCTPCLAFVHFFQEDW*FFRPLG Trigger: GCCAAGGGGTCTGAAGAACCACCAGTCTTCTTGGAA...AAAATGGACAAAGGCCAGGCATGGGGTGCAGAACTTTGATCCCAGCATTTGGGA 50% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| CDS-3UTR GCA 90 bp | AAGTTCTGCACCCCATGCCTGGCCTTTGTCCATTTTTATGGACTTAAGATTTCCCTGCCTGCATCCCGCTaGAACAGCAGCTCTGATGTT | + |
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Preference number: 4 (lower is better) Translates to: KFCTPCLAFVHFYGLKISLPASR*NSSSDV Trigger: AACATCAGAGCTGCTGTTGCAGCGGGATGCAGGCAG...GGAAATCTTAAGTCCATAAAAATGGACAAAGGCCAGGCATGGGGTGCAGAACTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| CDS-3UTR CCA 90 bp | ACTCAGAAATCGAGCTGCCTCTGCCTCCCAAATGCTGGGATCAAAGTTCTGCACTTGGTGTCATCTCATTaGCTGGAGACTCCATCAGAT | + |
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Preference number: 4 (lower is better) Translates to: TQKSSCLCLPNAGIKVLHLVSSH*LETPSD Trigger: ATCTGATGGAGTCTCCAGCCAATGAGATGACACCAA...GTGCAGAACTTTGATCCCAGCATTTGGGAGGCAGAGGCAGCTCGATTTCTGAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| CDS-3UTR CCA 90 bp | GTAGACCACGATGGTCTCAAACTCAGAAATCGAGCTGCCTCTGCCTCCCAAATGGATTTCCAAGAAGACTaGTGGTTCTTCAGACCCCTT | + |
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Preference number: 4 (lower is better) Translates to: VDHDGLKLRNRAASASQMDFQED*WFFRPL Trigger: AAGGGGTCTGAAGAACCACCAGTCTTCTTGGAAATC...CATTTGGGAGGCAGAGGCAGCTCGATTTCTGAGTTTGAGACCATCGTGGTCTAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| CDS-3UTR CCA 90 bp | TCCCAAATGCTGGGATCAAAGTTCTGCACCCCATGCCTGGCCTTTGTCCATTTTTGTTATCAACCTGGATaGTCTTCCCATTCCTGGCTC | + |
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Preference number: 4 (lower is better) Translates to: SQMLGSKFCTPCLAFVHFCYQPG*SSHSWL Trigger: GAGCCAGGAATGGGAAGACCATCCAGGTTGATAACA...AAAATGGACAAAGGCCAGGCATGGGGTGCAGAACTTTGATCCCAGCATTTGGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| CDS-3UTR CCA 90 bp | TCCCAAATGCTGGGATCAAAGTTCTGCACCCCATGCCTGGCCTTTGTCCATTTTCCCCAGTTTCTACGCTaGCCTCAAATAGTTTGTTCC | + |
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Preference number: 4 (lower is better) Translates to: SQMLGSKFCTPCLAFVHFPQFLR*PQIVCS Trigger: GGAACAAACTATTTGAGGCCAGCGTAGAAACTGGGG...AAAATGGACAAAGGCCAGGCATGGGGTGCAGAACTTTGATCCCAGCATTTGGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| CDS-3UTR CCA 90 bp | AATCGAGCTGCCTCTGCCTCCCAAATGCTGGGATCAAAGTTCTGCACCCCATGCTTGACATCAGCAAGCTaGCAATCTATGACTTGTCTT | + |
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Preference number: 4 (lower is better) Translates to: NRAASASQMLGSKFCTPCLTSAS*QSMTCL Trigger: AAGACAAGTCATAGATTGCCAGCTTGCTGATGTCAA...GCATGGGGTGCAGAACTTTGATCCCAGCATTTGGGAGGCAGAGGCAGCTCGATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| CDS-3UTR TCA 90 bp | AGTTCTGCACCCCATGCCTGGCCTTTGTCCATTTTTATGGACTTAAGATTTCCCTCCAGGACTTGGGTCTaGTATGGACCTTGGTTTTAC | + |
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Preference number: 4 (lower is better) Translates to: SSAPHAWPLSIFMDLRFPSRTWV*YGPWFY Trigger: GTAAAACCAAGGTCCATATCAGACCCAAGTCCTGGA...GGGAAATCTTAAGTCCATAAAAATGGACAAAGGCCAGGCATGGGGTGCAGAACT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| CDS-3UTR TCA 90 bp | AAGTTCTGCACCCCATGCCTGGCCTTTGTCCATTTTTATGGACTTAAGATTTCCATTTTCCAAGATTGTTaGCATCAGCAAGCTGGCAAT | + |
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Preference number: 4 (lower is better) Translates to: KFCTPCLAFVHFYGLKISIFQDC*HQQAGN Trigger: ATTGCCAGCTTGCTGATGTCAACAATCTTGGAAAAT...GGAAATCTTAAGTCCATAAAAATGGACAAAGGCCAGGCATGGGGTGCAGAACTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| CDS CCA 90 bp | GCAAAGAGGACCCCTTTCTCCCAGGCCTCGAGATCACCGCTTCCGTaGAGCTTCGCCGACACAGCCACCTTCTTCTTCTGCTTCAGGTCA | + |
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Preference number: 5 (lower is better) Translates to: AKRTPFSQASRSPLP*SFADTATFFFCFRS Trigger: TGACCTGAAGCAGAAGAAGAAGGTGGCTGTGTCGGCGAAGCTCCACGGAAGCGGTGATCTCGAGGCCTGGGAGAAAGGGGTCCTCTTTGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| CDS-3UTR CAA 90 bp | GTAGACCACGATGGTCTCAAACTCAGAAATCGAGCTGCCTCTGCCTCCCAAATGCCAGGGGTGCCTCGGTaGCATTGGGGCTGCCCATGT | + |
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Preference number: 5 (lower is better) Translates to: VDHDGLKLRNRAASASQMPGVPR*HWGCPC Trigger: ACATGGGCAGCCCCAATGCAACCGAGGCACCCCTGG...CATTTGGGAGGCAGAGGCAGCTCGATTTCTGAGTTTGAGACCATCGTGGTCTAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| CDS-3UTR CAA 90 bp | TCCCAAATGCTGGGATCAAAGTTCTGCACCCCATGCCTGGCCTTTGTCCATTTTTCCTTCTGCAGCAGCTaGCGCATCTCCACAGGGATC | + |
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Preference number: 5 (lower is better) Translates to: SQMLGSKFCTPCLAFVHFSFCSS*RISTGI Trigger: GATCCCTGTGGAGATGCGCAAGCTGCTGCAGAAGGA...AAAATGGACAAAGGCCAGGCATGGGGTGCAGAACTTTGATCCCAGCATTTGGGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| CDS-3UTR CAA 90 bp | AATCGAGCTGCCTCTGCCTCCCAAATGCTGGGATCAAAGTTCTGCACCCCATGCGTTAAGGTGGCAGCATaGATGATGACCTTGGGATTA | + |
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Preference number: 5 (lower is better) Translates to: NRAASASQMLGSKFCTPCVKVAA*MMTLGL Trigger: TAATCCCAAGGTCATCATCAATGCTGCCACCTTAAC...GCATGGGGTGCAGAACTTTGATCCCAGCATTTGGGAGGCAGAGGCAGCTCGATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| CDS-3UTR CAA 90 bp | TCCCAAATGCTGGGATCAAAGTTCTGCACCCCATGCCTGGCCTTTGTCCATTTTTCCTCTATCCAGGACTaGGGTCTGATATGGACCTTG | + |
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Preference number: 5 (lower is better) Translates to: SQMLGSKFCTPCLAFVHFSSIQD*GLIWTL Trigger: CAAGGTCCATATCAGACCCAAGTCCTGGATAGAGGA...AAAATGGACAAAGGCCAGGCATGGGGTGCAGAACTTTGATCCCAGCATTTGGGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| CDS-3UTR CAA 90 bp | ACGATGGTCTCAAACTCAGAAATCGAGCTGCCTCTGCCTCCCAAATGCTGGGATTCCCGCACTTGTAAATaGTGGCAGGTCATCATCTTT | + |
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Preference number: 5 (lower is better) Translates to: TMVSNSEIELPLPPKCWDSRTCK*WQVIIF Trigger: AAAGATGATGACCTGCCACAATTTACAAGTGCGGGA...ATCCCAGCATTTGGGAGGCAGAGGCAGCTCGATTTCTGAGTTTGAGACCATCGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| CDS-3UTR CAA 90 bp | TCCCAAATGCTGGGATCAAAGTTCTGCACCCCATGCCTGGCCTTTGTCCATTTTTTTCAGCGAATCTGGTaGGTGTCATCTCATTGGCTG | + |
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Preference number: 5 (lower is better) Translates to: SQMLGSKFCTPCLAFVHFFQRIW*VSSHWL Trigger: CAGCCAATGAGATGACACCAACCAGATTCGCTGAAA...AAAATGGACAAAGGCCAGGCATGGGGTGCAGAACTTTGATCCCAGCATTTGGGA 49% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| CDS-3UTR CAA 90 bp | AGACCACGATGGTCTCAAACTCAGAAATCGAGCTGCCTCTGCCTCCCAAATGCTGAACGAACCCATTTCTaGTTCCTCTATCCAGGACTT | + |
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Preference number: 5 (lower is better) Translates to: RPRWSQTQKSSCLCLPNAERTHF*FLYPGL Trigger: AAGTCCTGGATAGAGGAACAAGAAATGGGTTCGTTC...AGCATTTGGGAGGCAGAGGCAGCTCGATTTCTGAGTTTGAGACCATCGTGGTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| CDS-3UTR CAA 90 bp | AGACCACGATGGTCTCAAACTCAGAAATCGAGCTGCCTCTGCCTCCCAAATGCTCTGTATTTTCCAAGATaGTTGACATCAGCAAGCTGG | + |
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Preference number: 5 (lower is better) Translates to: RPRWSQTQKSSCLCLPNALYFPR*LTSASW Trigger: CCAGCTTGCTGATGTCAACAATCTTGGAAAATACAG...AGCATTTGGGAGGCAGAGGCAGCTCGATTTCTGAGTTTGAGACCATCGTGGTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| CDS-3UTR CAA 90 bp | TCCCAAATGCTGGGATCAAAGTTCTGCACCCCATGCCTGGCCTTTGTCCATTTTGGAATCTCATCTTTGTaGGTCATCACTCCTGCTATG | + |
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Preference number: 5 (lower is better) Translates to: SQMLGSKFCTPCLAFVHFGISSL*VITPAM Trigger: CATAGCAGGAGTGATGACCAACAAAGATGAGATTCC...AAAATGGACAAAGGCCAGGCATGGGGTGCAGAACTTTGATCCCAGCATTTGGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| CDS-3UTR CAA 90 bp | TTGCTTTTCCAAGACAGGGTTTCTCTGTATAGCCATGGCTATCCTGGAATTCACCTGGTTTTGCCTGCTTaGAGAGGAGGTCCAGATATG | + |
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Preference number: 5 (lower is better) Translates to: LLFQDRVSLYSHGYPGIHLVLPA*RGGPDM Trigger: CATATCTGGACCTCCTCTCAAAGCAGGCAAAACCAG...GTGAATTCCAGGATAGCCATGGCTATACAGAGAAACCCTGTCTTGGAAAAGCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| CDS-3UTR CAA 90 bp | AGTTCTGCACCCCATGCCTGGCCTTTGTCCATTTTTATGGACTTAAGATTTCCCTATTTTCCAAGATTGTaGACATCAGCAAGCTGGCAA | + |
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Preference number: 5 (lower is better) Translates to: SSAPHAWPLSIFMDLRFPYFPRL*TSASWQ Trigger: TTGCCAGCTTGCTGATGTCAACAATCTTGGAAAATA...GGGAAATCTTAAGTCCATAAAAATGGACAAAGGCCAGGCATGGGGTGCAGAACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| CDS-3UTR CAA 90 bp | TTGCTTTTCCAAGACAGGGTTTCTCTGTATAGCCATGGCTATCCTGGAATTCACCTGGCAATCTATGACTaGTCTTGTATAATGCTCAAA | + |
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Preference number: 5 (lower is better) Translates to: LLFQDRVSLYSHGYPGIHLAIYD*SCIMLK Trigger: TTTGAGCATTATACAAGACAAGTCATAGATTGCCAG...GTGAATTCCAGGATAGCCATGGCTATACAGAGAAACCCTGTCTTGGAAAAGCAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| CDS CCA 72 bp | ACCCCTTTCTCCCAGGCCTCGAGATCACCGCTTCCGTaGAGCTTCGCCGACACAGCCACCTTCTTCTTCTGC | + |
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Preference number: 6 (lower is better) Translates to: TPFSQASRSPLP*SFADTATFFFC Trigger: GCAGAAGAAGAAGGTGGCTGTGTCGGCGAAGCTCCACGGAAGCGGTGATCTCGAGGCCTGGGAGAAAGGGGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| CDS GCA 72 bp | TGCCCACTTCGTATGTGTCACAAACTCTCGCAGGAATaGGGCAGCTGTACACGCACCTGCAGATCTGTATTT | + |
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Preference number: 6 (lower is better) Translates to: CPLRMCHKLSQE*GSCTRTCRSVF Trigger: AAATACAGATCTGCAGGTGCGTGTACAGCTGCCGCATTCCTGCGAGAGTTTGTGACACATACGAAGTGGGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046122.11 |
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| CDS CAA 72 bp | CACCAACTTATTAAAACTCTCTCCCGCACTTGTAAATaGTGGCAGGTCATCATCTTTGTCTTTGGCATAAAT | + |
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Preference number: 6 (lower is better) Translates to: HQLIKTLSRTCK*WQVIIFVFGIN Trigger: ATTTATGCCAAAGACAAAGATGATGACCTGCCACAATTTACAAGTGCGGGAGAGAGTTTTAATAAGTTGGTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046122.11 ENSMUST00000198534.2 |
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