Pregenerated sensors for LAMTOR3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000091512Ensembl transcript IDs: ENSMUST00000168345.6, ENSMUST00000197064.5
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GAATACATAGCTACAAGTACTATTGTGGTCGGAAGGTTGCTGGCCTaGTCCAGGGTTGCTGCAGTGAGGCCCAGGTGTGCATCAGAACCA | + |
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Preference number: 1 (lower is better) Translates to: EYIATSTIVVGRLLA*SRVAAVRPRCASEP Trigger: TGGTTCTGATGCACACCTGGGCCTCACTGCAGCAACCCTGGACCAGGCCAGCAACCTTCCGACCACAATAGTACTTGTAGCTATGTATTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000168345.6 ENSMUST00000197064.5 |
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| 3UTR CCA 90 bp | AAATATGACCTCATTATTATTCTCAGTAAAAGGGTCTGCGGCTTATaGAGTGGAGCAGAGTTCAGCAGGTGTGCCTGCTGGCTCAAGGGC | + |
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Preference number: 1 (lower is better) Translates to: KYDLIIILSKRVCGL*SGAEFSRCACWLKG Trigger: GCCCTTGAGCCAGCAGGCACACCTGCTGAACTCTGCTCCACTCCATAAGCCGCAGACCCTTTTACTGAGAATAATAATGAGGTCATATTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168345.6 |
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| 3UTR CCA 90 bp | AAACAGAACTCAGTAACATGCATTTCAATTGTACAAAGAACACAATaGTGGAAGCACGGTTACAGCAAAGCGGAGAGACATCATAAGCAG | + |
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Preference number: 1 (lower is better) Translates to: KQNSVTCISIVQRTQ*WKHGYSKAERHHKQ Trigger: CTGCTTATGATGTCTCTCCGCTTTGCTGTAACCGTGCTTCCACCATTGTGTTCTTTGTACAATTGAAATGCATGTTACTGAGTTCTGTTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168345.6 |
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| 3UTR-3UTR GCA 90 bp | CGGCTTATGGAGTGGAGCAGAGTTCAGCAGGTGTGCCTGCTGGCTCAAGGGCCTGGCCTGGTCCAGGGTTaGTGCAGTGAGGCCCAGGTG | + |
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Preference number: 2 (lower is better) Translates to: RLMEWSRVQQVCLLAQGPGLVQG*CSEAQV Trigger: CACCTGGGCCTCACTGCAGCAACCCTGGACCAGGCC...AGGCCCTTGAGCCAGCAGGCACACCTGCTGAACTCTGCTCCACTCCATAAGCCG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168345.6 |
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| 3UTR-3UTR CCA 90 bp | CGGCTTATGGAGTGGAGCAGAGTTCAGCAGGTGTGCCTGCTGGCTCAAGGGCCTTGGTCGGAAGGTTGCTaGCCTGGTCCAGGGTTGCTG | + |
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Preference number: 2 (lower is better) Translates to: RLMEWSRVQQVCLLAQGPWSEGC*PGPGLL Trigger: CAGCAACCCTGGACCAGGCCAGCAACCTTCCGACCA...AGGCCCTTGAGCCAGCAGGCACACCTGCTGAACTCTGCTCCACTCCATAAGCCG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168345.6 |
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| 3UTR-3UTR GCA 90 bp | TGGAGTGGAGCAGAGTTCAGCAGGTGTGCCTGCTGGCTCAAGGGCCTCACGGTCTCACTTTCAGGTGCCTaGACTAACTCCATGGGAGCT | + |
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Preference number: 2 (lower is better) Translates to: WSGAEFSRCACWLKGLTVSLSGA*TNSMGA Trigger: AGCTCCCATGGAGTTAGTGCAGGCACCTGAAAGTGA...GACCGTGAGGCCCTTGAGCCAGCAGGCACACCTGCTGAACTCTGCTCCACTCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168345.6 |
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| 3UTR-3UTR CCA 90 bp | CTGCTCTGGACAGATACCACTCACTTTCAGGTGCCTGCACTAACTCCATGGGAGGGAAGGTTGCTGGCCTaGTCCAGGGTTGCTGCAGTG | + |
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Preference number: 2 (lower is better) Translates to: LLWTDTTHFQVPALTPWEGRLLA*SRVAAV Trigger: CACTGCAGCAACCCTGGACCAGGCCAGCAACCTTCC...CTCCCATGGAGTTAGTGCAGGCACCTGAAAGTGAGTGGTATCTGTCCAGAGCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168345.6 |
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| 3UTR-3UTR CCA 90 bp | CTGTCTATAAATTATAGCAATAGGCTCTTCTTTAGTGTAATGTGGAAAAGCGGCGGAAGGTTGCTGGCCTaGTCCAGGGTTGCTGCAGTG | + |
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Preference number: 2 (lower is better) Translates to: LSINYSNRLFFSVMWKSGGRLLA*SRVAAV Trigger: CACTGCAGCAACCCTGGACCAGGCCAGCAACCTTCC...GCCGCTTTTCCACATTACACTAAAGAAGAGCCTATTGCTATAATTTATAGACAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000168345.6 ENSMUST00000197064.5 |
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| 3UTR-3UTR CCA 90 bp | CTGTCTATAAATTATAGCAATAGGCTCTTCTTTAGTGTAATGTGGAAAAGCGGCTGGTCGGAAGGTTGCTaGCCTGGTCCAGGGTTGCTG | + |
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Preference number: 2 (lower is better) Translates to: LSINYSNRLFFSVMWKSGWSEGC*PGPGLL Trigger: CAGCAACCCTGGACCAGGCCAGCAACCTTCCGACCA...GCCGCTTTTCCACATTACACTAAAGAAGAGCCTATTGCTATAATTTATAGACAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000168345.6 ENSMUST00000197064.5 |
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| 3UTR-3UTR CCA 90 bp | ATGGCCATCCTGTCATTTTATATACATCCTGATAAGGAAACAGAACTCAGTAACCAAAGAACACAATGGTaGAAGCACGGTTACAGCAAA | + |
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Preference number: 2 (lower is better) Translates to: MAILSFYIHPDKETELSNQRTQW*KHGYSK Trigger: TTTGCTGTAACCGTGCTTCCACCATTGTGTTCTTTG...GTTACTGAGTTCTGTTTCCTTATCAGGATGTATATAAAATGACAGGATGGCCAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168345.6 |
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| 3UTR GCA 72 bp | TGTGGTCGGAAGGTTGCTGGCCTGGTCCAGGGTTGCTaGAGTGAGGCCCAGGTGTGCATCAGAACCACTGCT | + |
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Preference number: 3 (lower is better) Translates to: CGRKVAGLVQGC*SEAQVCIRTTA Trigger: AGCAGTGGTTCTGATGCACACCTGGGCCTCACTGCAGCAACCCTGGACCAGGCCAGCAACCTTCCGACCACA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000168345.6 ENSMUST00000197064.5 |
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| 3UTR CCA 72 bp | GCTACAAGTACTATTGTGGTCGGAAGGTTGCTGGCCTaGTCCAGGGTTGCTGCAGTGAGGCCCAGGTGTGCA | + |
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Preference number: 3 (lower is better) Translates to: ATSTIVVGRLLA*SRVAAVRPRCA Trigger: TGCACACCTGGGCCTCACTGCAGCAACCCTGGACCAGGCCAGCAACCTTCCGACCACAATAGTACTTGTAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000168345.6 ENSMUST00000197064.5 |
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| 3UTR CCA 72 bp | CTCATTATTATTCTCAGTAAAAGGGTCTGCGGCTTATaGAGTGGAGCAGAGTTCAGCAGGTGTGCCTGCTGG | + |
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Preference number: 3 (lower is better) Translates to: LIIILSKRVCGL*SGAEFSRCACW Trigger: CCAGCAGGCACACCTGCTGAACTCTGCTCCACTCCATAAGCCGCAGACCCTTTTACTGAGAATAATAATGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168345.6 |
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| 3UTR GCA 72 bp | AAATATGACCTCATTATTATTCTCAGTAAAAGGGTCTaGGGCTTATGGAGTGGAGCAGAGTTCAGCAGGTGT | + |
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Preference number: 3 (lower is better) Translates to: KYDLIIILSKRV*GLWSGAEFSRC Trigger: ACACCTGCTGAACTCTGCTCCACTCCATAAGCCGCAGACCCTTTTACTGAGAATAATAATGAGGTCATATTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168345.6 |
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| 3UTR CCA 72 bp | GTAACATGCATTTCAATTGTACAAAGAACACAATGGTaGAAGCACGGTTACAGCAAAGCGGAGAGACATCAT | + |
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Preference number: 3 (lower is better) Translates to: VTCISIVQRTQW*KHGYSKAERHH Trigger: ATGATGTCTCTCCGCTTTGCTGTAACCGTGCTTCCACCATTGTGTTCTTTGTACAATTGAAATGCATGTTAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168345.6 |
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| 3UTR CCA 72 bp | TCAGTAACATGCATTTCAATTGTACAAAGAACACAATaGTGGAAGCACGGTTACAGCAAAGCGGAGAGACAT | + |
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Preference number: 3 (lower is better) Translates to: SVTCISIVQRTQ*WKHGYSKAERH Trigger: ATGTCTCTCCGCTTTGCTGTAACCGTGCTTCCACCATTGTGTTCTTTGTACAATTGAAATGCATGTTACTGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168345.6 |
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| 3UTR GCA 72 bp | ATATACATCCTGATAAGGAAACAGAACTCAGTAACATaGATTTCAATTGTACAAAGAACACAATGGTGGAAG | + |
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Preference number: 3 (lower is better) Translates to: IYILIRKQNSVT*ISIVQRTQWWK Trigger: CTTCCACCATTGTGTTCTTTGTACAATTGAAATGCATGTTACTGAGTTCTGTTTCCTTATCAGGATGTATAT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168345.6 |
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| CDS-3UTR CCA 90 bp | CTACAAGTACTATTGTGGTCGGAAGGTTGCTGGCCTGGTCCAGGGTTGCTGCAGGAGCCCTTCAACACTTaGCAACTTTTTGTACAGGAA | + |
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Preference number: 4 (lower is better) Translates to: LQVLLWSEGCWPGPGLLQEPFNT*QLFVQE Trigger: TTCCTGTACAAAAAGTTGCCAAGTGTTGAAGGGCTC...CTGCAGCAACCCTGGACCAGGCCAGCAACCTTCCGACCACAATAGTACTTGTAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000168345.6 ENSMUST00000197064.5 |
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| CDS-3UTR CCA 90 bp | TCTGAATACATAGCTACAAGTACTATTGTGGTCGGAAGGTTGCTGGCCTGGTCCGAGCCCTTCAACACTTaGCAACTTTTTGTACAGGAA | + |
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Preference number: 4 (lower is better) Translates to: SEYIATSTIVVGRLLAWSEPFNT*QLFVQE Trigger: TTCCTGTACAAAAAGTTGCCAAGTGTTGAAGGGCTC...GGACCAGGCCAGCAACCTTCCGACCACAATAGTACTTGTAGCTATGTATTCAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000168345.6 ENSMUST00000197064.5 |
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| CDS-3UTR CAA 90 bp | CATAGCTACAAGTACTATTGTGGTCGGAAGGTTGCTGGCCTGGTCCAGGGTTGCTGCTGCCTTGGTCTGTaGCGAGGGCAAACGTGGATA | + |
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Preference number: 5 (lower is better) Translates to: HSYKYYCGRKVAGLVQGCCCLGL*RGQTWI Trigger: TATCCACGTTTGCCCTCGCAACAGACCAAGGCAGCA...GCAACCCTGGACCAGGCCAGCAACCTTCCGACCACAATAGTACTTGTAGCTATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000168345.6 ENSMUST00000197064.5 |
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| CDS-3UTR CAA 90 bp | TCTGAATACATAGCTACAAGTACTATTGTGGTCGGAAGGTTGCTGGCCTGGTCCTCCGAGTTTGCTGCCTaGGTCTGTTGCGAGGGCAAA | + |
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Preference number: 5 (lower is better) Translates to: SEYIATSTIVVGRLLAWSSEFAA*VCCEGK Trigger: TTTGCCCTCGCAACAGACCAAGGCAGCAAACTCGGA...GGACCAGGCCAGCAACCTTCCGACCACAATAGTACTTGTAGCTATGTATTCAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000168345.6 ENSMUST00000197064.5 |
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| CDS-3UTR CAA 90 bp | CCTTCTGAATACATAGCTACAAGTACTATTGTGGTCGGAAGGTTGCTGGCCTGGTCCGAGTTTGCTGCCTaGGTCTGTTGCGAGGGCAAA | + |
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Preference number: 5 (lower is better) Translates to: PSEYIATSTIVVGRLLAWSEFAA*VCCEGK Trigger: TTTGCCCTCGCAACAGACCAAGGCAGCAAACTCGGA...CCAGGCCAGCAACCTTCCGACCACAATAGTACTTGTAGCTATGTATTCAGAAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000168345.6 ENSMUST00000197064.5 |
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| CDS-3UTR CAA 90 bp | CTGTCTATAAATTATAGCAATAGGCTCTTCTTTAGTGTAATGTGGAAAAGCGGCTGCTGCCTTGGTCTGTaGCGAGGGCAAACGTGGATA | + |
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Preference number: 5 (lower is better) Translates to: LSINYSNRLFFSVMWKSGCCLGL*RGQTWI Trigger: TATCCACGTTTGCCCTCGCAACAGACCAAGGCAGCA...GCCGCTTTTCCACATTACACTAAAGAAGAGCCTATTGCTATAATTTATAGACAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000168345.6 ENSMUST00000197064.5 |
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