RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LAMP5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000027270

Ensembl transcript IDs: ENSMUST00000057503.7, ENSMUST00000144403.8

Found 70 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCATCCCTGGGTTTAAGCATGGACACAGGCCAGGCACACCTCAGGTaGCTGGGCCTGTTGGAGTGTAGCTATGTTGGTGGATCCTGTATA +
Preference number: 1 (lower is better)
Translates to: PSLGLSMDTGQAHLR*LGLLECSYVGGSCI
Trigger: TATACAGGATCCACCAACATAGCTACACTCCAACAGGCCCAGGCACCTGAGGTGTGCCTGGCCTGTGTCCATGCTTAAACCCAGGGATGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
3UTR CCA 90 bp ATTCCCAAAACAATCACTAGACATGCAGAATGCCAGCCGGAAGCATaGGTCACTTTCAGGGGTCTTGCTGCTTGCAGGGAGCGTGAGGTT +
Preference number: 1 (lower is better)
Translates to: IPKTITRHAECQPEA*VTFRGLAACREREV
Trigger: AACCTCACGCTCCCTGCAAGCAGCAAGACCCCTGAAAGTGACCCATGCTTCCGGCTGGCATTCTGCATGTCTAGTGATTGTTTTGGGAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
3UTR TCA 90 bp TGGGCCTGTTGGAGTGTAGCTATGTTGGTGGATCCTGTATACAGGTaGAAAAGTGCCATTGTCGTTCTACATCATCTGGTTTGGGGGCAG +
Preference number: 1 (lower is better)
Translates to: WACWSVAMLVDPVYR*KSAIVVLHHLVWGQ
Trigger: CTGCCCCCAAACCAGATGATGTAGAACGACAATGGCACTTTTTCACCTGTATACAGGATCCACCAACATAGCTACACTCCAACAGGCCCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
3UTR-3UTR TCA 90 bp CAACCGTGCGTAGTGTCATTAGACGGGTTCTTGTGCTGCAGAGTCACTGGGTGCGGTTTGGGGGCAGGATaGGGAGGATGTCTGCCTGAT +
Preference number: 2 (lower is better)
Translates to: QPCVVSLDGFLCCRVTGCGLGAG*GGCLPD
Trigger: ATCAGGCAGACATCCTCCTCATCCTGCCCCCAAACC...GCACCCAGTGACTCTGCAGCACAAGAACCCGTCTAATGACACTACGCACGGTTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
3UTR-3UTR GCA 90 bp GCACCTGGGTTCTTCTGGCCTAGAGAGGTCTCCCAAAGGAAGCGTTTCCACTTTCAGGCACACCTCAGGTaGCTGGGCCTGTTGGAGTGT +
Preference number: 2 (lower is better)
Translates to: APGFFWPREVSQRKRFHFQAHLR*LGLLEC
Trigger: ACACTCCAACAGGCCCAGGCACCTGAGGTGTGCCTG...AAAGTGGAAACGCTTCCTTTGGGAGACCTCTCTAGGCCAGAAGAACCCAGGTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
3UTR CAA 90 bp GACATGCAGAATGCCAGCCGGAAGCATGGGTCACTTTCAGGGGTCTaGCTGCTTGCAGGGAGCGTGAGGTTGTGTTTTGTGTACACTGAA +
Preference number: 2 (lower is better)
Translates to: DMQNASRKHGSLSGV*LLAGSVRLCFVYTE
Trigger: TTCAGTGTACACAAAACACAACCTCACGCTCCCTGCAAGCAGCAAGACCCCTGAAAGTGACCCATGCTTCCGGCTGGCATTCTGCATGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
3UTR-3UTR CCA 90 bp GACATGCAGAATGCCAGCCGGAAGCATGGGTCACTTTCAGGGGTCTTGCTGCTTCTACATCATCTGGTTTaGGGGCAGGATGAGGAGGAT +
Preference number: 2 (lower is better)
Translates to: DMQNASRKHGSLSGVLLLLHHLV*GQDEED
Trigger: ATCCTCCTCATCCTGCCCCCAAACCAGATGATGTAG...AAGCAGCAAGACCCCTGAAAGTGACCCATGCTTCCGGCTGGCATTCTGCATGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
3UTR-3UTR CCA 90 bp ACAATCACTAGACATGCAGAATGCCAGCCGGAAGCATGGGTCACTTTCAGGGGTGGTGCCTGGGCCTGTTaGAGTGTAGCTATGTTGGTG +
Preference number: 2 (lower is better)
Translates to: TITRHAECQPEAWVTFRGGAWAC*SVAMLV
Trigger: CACCAACATAGCTACACTCCAACAGGCCCAGGCACC...ACCCCTGAAAGTGACCCATGCTTCCGGCTGGCATTCTGCATGTCTAGTGATTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
3UTR-3UTR GCA 90 bp AAACAACCGTGCGTAGTGTCATTAGACGGGTTCTTGTGCTGCAGAGTCACTGGGCCGAACCCCAAGACATaGCTTCCATCCCTGGGTTTA +
Preference number: 2 (lower is better)
Translates to: KQPCVVSLDGFLCCRVTGPNPKT*LPSLGL
Trigger: TAAACCCAGGGATGGAAGGCATGTCTTGGGGTTCGG...CCCAGTGACTCTGCAGCACAAGAACCCGTCTAATGACACTACGCACGGTTGTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
3UTR-3UTR CCA 90 bp GGGGTCTTGCTGCTTGCAGGGAGCGTGAGGTTGTGTTTTGTGTACACTGAAAAAACTTACTCCGCAGTATaGACACAACATCCACCATTA +
Preference number: 2 (lower is better)
Translates to: GVLLLAGSVRLCFVYTEKTYSAV*TQHPPL
Trigger: TAATGGTGGATGTTGTGTCCATACTGCGGAGTAAGT...TTTTTCAGTGTACACAAAACACAACCTCACGCTCCCTGCAAGCAGCAAGACCCC
47% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
3UTR-3UTR GCA 90 bp ACAATCACTAGACATGCAGAATGCCAGCCGGAAGCATGGGTCACTTTCAGGGGTATACAGGTGAAAAAGTaGCATTGTCGTTCTACATCA +
Preference number: 2 (lower is better)
Translates to: TITRHAECQPEAWVTFRGIQVKK*HCRSTS
Trigger: TGATGTAGAACGACAATGGCACTTTTTCACCTGTAT...ACCCCTGAAAGTGACCCATGCTTCCGGCTGGCATTCTGCATGTCTAGTGATTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
3UTR GCA 72 bp GGTTTAAGCATGGACACAGGCCAGGCACACCTCAGGTaGCTGGGCCTGTTGGAGTGTAGCTATGTTGGTGGA +
Preference number: 3 (lower is better)
Translates to: GLSMDTGQAHLR*LGLLECSYVGG
Trigger: TCCACCAACATAGCTACACTCCAACAGGCCCAGGCACCTGAGGTGTGCCTGGCCTGTGTCCATGCTTAAACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
3UTR CCA 72 bp ACACAGGCCAGGCACACCTCAGGTGCCTGGGCCTGTTaGAGTGTAGCTATGTTGGTGGATCCTGTATACAGG +
Preference number: 3 (lower is better)
Translates to: TQARHTSGAWAC*SVAMLVDPVYR
Trigger: CCTGTATACAGGATCCACCAACATAGCTACACTCCAACAGGCCCAGGCACCTGAGGTGTGCCTGGCCTGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
3UTR-3UTR CAA 90 bp AAACAACCGTGCGTAGTGTCATTAGACGGGTTCTTGTGCTGCAGAGTCACTGGGTCACTTTCAGGGGTCTaGCTGCTTGCAGGGAGCGTG +
Preference number: 3 (lower is better)
Translates to: KQPCVVSLDGFLCCRVTGSLSGV*LLAGSV
Trigger: CACGCTCCCTGCAAGCAGCAAGACCCCTGAAAGTGA...CCCAGTGACTCTGCAGCACAAGAACCCGTCTAATGACACTACGCACGGTTGTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
3UTR CCA 72 bp ACAATCACTAGACATGCAGAATGCCAGCCGGAAGCATaGGTCACTTTCAGGGGTCTTGCTGCTTGCAGGGAG +
Preference number: 3 (lower is better)
Translates to: TITRHAECQPEA*VTFRGLAACRE
Trigger: CTCCCTGCAAGCAGCAAGACCCCTGAAAGTGACCCATGCTTCCGGCTGGCATTCTGCATGTCTAGTGATTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
3UTR-3UTR CAA 90 bp TGGCCTAGAGAGGTCTCCCAAAGGAAGCGTTTCCACTTTCTAAATGCAAGGGCCAGGTGCCTGGGCCTGTaGGAGTGTAGCTATGTTGGT +
Preference number: 3 (lower is better)
Translates to: WPREVSQRKRFHFLNARARCLGL*ECSYVG
Trigger: ACCAACATAGCTACACTCCAACAGGCCCAGGCACCT...GGCCCTTGCATTTAGAAAGTGGAAACGCTTCCTTTGGGAGACCTCTCTAGGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
3UTR GCA 72 bp AGCTATGTTGGTGGATCCTGTATACAGGTGAAAAAGTaGCATTGTCGTTCTACATCATCTGGTTTGGGGGCA +
Preference number: 3 (lower is better)
Translates to: SYVGGSCIQVKK*HCRSTSSGLGA
Trigger: TGCCCCCAAACCAGATGATGTAGAACGACAATGGCACTTTTTCACCTGTATACAGGATCCACCAACATAGCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
3UTR GCA 72 bp AGAGGTCTCCCAAAGGAAGCGTTTCCACTTTCTAAATaGAAGGGCCACATCTTTCTTTCTTTCTACGTGCTG +
Preference number: 3 (lower is better)
Translates to: RGLPKEAFPLSK*KGHIFLSFYVL
Trigger: CAGCACGTAGAAAGAAAGAAAGATGTGGCCCTTGCATTTAGAAAGTGGAAACGCTTCCTTTGGGAGACCTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
3UTR GCA 72 bp ACTTGGAACCGACACATTATGAATTCCAAACAACCGTaGGTAGTGTCATTAGACGGGTTCTTGTGCTGCAGA +
Preference number: 3 (lower is better)
Translates to: TWNRHIMNSKQP*VVSLDGFLCCR
Trigger: TCTGCAGCACAAGAACCCGTCTAATGACACTACGCACGGTTGTTTGGAATTCATAATGTGTCGGTTCCAAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
3UTR TCA 72 bp TGGAGTGTAGCTATGTTGGTGGATCCTGTATACAGGTaGAAAAGTGCCATTGTCGTTCTACATCATCTGGTT +
Preference number: 3 (lower is better)
Translates to: WSVAMLVDPVYR*KSAIVVLHHLV
Trigger: AACCAGATGATGTAGAACGACAATGGCACTTTTTCACCTGTATACAGGATCCACCAACATAGCTACACTCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
CDS-3UTR CCA 90 bp CAACCGTGCGTAGTGTCATTAGACGGGTTCTTGTGCTGCAGAGTCACTGGGTGCTCGTTGTGGCCACAGTaGCCCTTCACCTCAGCTCCC +
Preference number: 4 (lower is better)
Translates to: QPCVVSLDGFLCCRVTGCSLWPQ*PFTSAP
Trigger: GGGAGCTGAGGTGAAGGGCCACTGTGGCCACAACGA...GCACCCAGTGACTCTGCAGCACAAGAACCCGTCTAATGACACTACGCACGGTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
3UTR CAA 72 bp GACACAGGCCAGGCACACCTCAGGTGCCTGGGCCTGTaGGAGTGTAGCTATGTTGGTGGATCCTGTATACAG +
Preference number: 4 (lower is better)
Translates to: DTGQAHLRCLGL*ECSYVGGSCIQ
Trigger: CTGTATACAGGATCCACCAACATAGCTACACTCCAACAGGCCCAGGCACCTGAGGTGTGCCTGGCCTGTGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
CDS-3UTR CCA 90 bp GACATGCAGAATGCCAGCCGGAAGCATGGGTCACTTTCAGGGGTCTTGCTGCTTACTGGGAACGGTCCCTaGGGATCTGCACTTGATTGG +
Preference number: 4 (lower is better)
Translates to: DMQNASRKHGSLSGVLLLTGNGP*GSALDW
Trigger: CCAATCAAGTGCAGATCCCCAGGGACCGTTCCCAGT...AAGCAGCAAGACCCCTGAAAGTGACCCATGCTTCCGGCTGGCATTCTGCATGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
CDS-3UTR GCA 90 bp GCACACCTCAGGTGCCTGGGCCTGTTGGAGTGTAGCTATGTTGGTGGATCCTGTAGGGTCTCTTCCAACTaGTCTTGCTCATCCACTGGA +
Preference number: 4 (lower is better)
Translates to: AHLRCLGLLECSYVGGSCRVSSN*SCSSTG
Trigger: TCCAGTGGATGAGCAAGAGCAGTTGGAAGAGACCCT...ACAGGATCCACCAACATAGCTACACTCCAACAGGCCCAGGCACCTGAGGTGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
CDS-3UTR CCA 90 bp GGGGTCTTGCTGCTTGCAGGGAGCGTGAGGTTGTGTTTTGTGTACACTGAAAAAAGCTCCGACTCGTTGTaGCCACAGTGGCCCTTCACC +
Preference number: 4 (lower is better)
Translates to: GVLLLAGSVRLCFVYTEKSSDSL*PQWPFT
Trigger: GGTGAAGGGCCACTGTGGCCACAACGAGTCGGAGCT...TTTTTCAGTGTACACAAAACACAACCTCACGCTCCCTGCAAGCAGCAAGACCCC
54% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
CDS-3UTR CCA 90 bp GAAGCATGGGTCACTTTCAGGGGTCTTGCTGCTTGCAGGGAGCGTGAGGTTGTGATGATATCAAAGGGCTaGATGTGCACTGCGGACAGG +
Preference number: 4 (lower is better)
Translates to: EAWVTFRGLAACREREVVMISKG*MCTADR
Trigger: CCTGTCCGCAGTGCACATCCAGCCCTTTGATATCAT...CACAACCTCACGCTCCCTGCAAGCAGCAAGACCCCTGAAAGTGACCCATGCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
CDS-3UTR TCA 90 bp TGGCCTAGAGAGGTCTCCCAAAGGAAGCGTTTCCACTTTCTAAATGCAAGGGCCCGGACAGGATCATGGTaGCAGTCTTCTGAGGGTCAC +
Preference number: 4 (lower is better)
Translates to: WPREVSQRKRFHFLNARARTGSW*QSSEGH
Trigger: GTGACCCTCAGAAGACTGTCACCATGATCCTGTCCG...GGCCCTTGCATTTAGAAAGTGGAAACGCTTCCTTTGGGAGACCTCTCTAGGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
CDS-3UTR GCA 90 bp AGGTGCCTGGGCCTGTTGGAGTGTAGCTATGTTGGTGGATCCTGTATACAGGTGTTTGGCTGCAAACTCTaGCATGAGACACGTCGTCCC +
Preference number: 4 (lower is better)
Translates to: RCLGLLECSYVGGSCIQVFGCKL*HETRRP
Trigger: GGGACGACGTGTCTCATGGCAGAGTTTGCAGCCAAA...CACCTGTATACAGGATCCACCAACATAGCTACACTCCAACAGGCCCAGGCACCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
CDS-3UTR GCA 90 bp GGGGTCTTGCTGCTTGCAGGGAGCGTGAGGTTGTGTTTTGTGTACACTGAAAAAGGGCTGGATGTGCACTaGGGACAGGATCATGGTGAC +
Preference number: 4 (lower is better)
Translates to: GVLLLAGSVRLCFVYTEKGLDVH*GQDHGD
Trigger: GTCACCATGATCCTGTCCGCAGTGCACATCCAGCCC...TTTTTCAGTGTACACAAAACACAACCTCACGCTCCCTGCAAGCAGCAAGACCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
CDS-3UTR CCA 90 bp GAAGCATGGGTCACTTTCAGGGGTCTTGCTGCTTGCAGGGAGCGTGAGGTTGTGATTCCAAGTCGCCTCTaGTCCTTTGGAAGTGTTGTG +
Preference number: 4 (lower is better)
Translates to: EAWVTFRGLAACREREVVIPSRL*SFGSVV
Trigger: CACAACACTTCCAAAGGACCAGAGGCGACTTGGAAT...CACAACCTCACGCTCCCTGCAAGCAGCAAGACCCCTGAAAGTGACCCATGCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
CDS-3UTR CCA 90 bp GAAAGCTATTACCCTACTCACCAGCCCCTACTTACTCCGCAGTATGGACACAACCCCATGTGCTTGTACTaGGAACGGTCCCTGGGGATC +
Preference number: 4 (lower is better)
Translates to: ESYYPTHQPLLTPQYGHNPMCLY*ERSLGI
Trigger: GATCCCCAGGGACCGTTCCCAGTACAAGCACATGGG...GTTGTGTCCATACTGCGGAGTAAGTAGGGGCTGGTGAGTAGGGTAATAGCTTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
CDS-3UTR TCA 90 bp GGGTTCTTCTGGCCTAGAGAGGTCTCCCAAAGGAAGCGTTTCCACTTTCTAAATACATCCCAGCTGGGGTaGCCAAGGCAGAGAGGTGAT +
Preference number: 4 (lower is better)
Translates to: GFFWPREVSQRKRFHFLNTSQLG*PRQRGD
Trigger: ATCACCTCTCTGCCTTGGTCACCCCAGCTGGGATGT...ATTTAGAAAGTGGAAACGCTTCCTTTGGGAGACCTCTCTAGGCCAGAAGAACCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
CDS-3UTR TCA 90 bp ACAATCACTAGACATGCAGAATGCCAGCCGGAAGCATGGGTCACTTTCAGGGGTCTGCAAACTCTGCCATaGGACACGTCGTCCCATTTT +
Preference number: 4 (lower is better)
Translates to: TITRHAECQPEAWVTFRGLQTLP*DTSSHF
Trigger: AAAATGGGACGACGTGTCTCATGGCAGAGTTTGCAG...ACCCCTGAAAGTGACCCATGCTTCCGGCTGGCATTCTGCATGTCTAGTGATTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
CDS-3UTR TCA 90 bp GCACCTGGGTTCTTCTGGCCTAGAGAGGTCTCCCAAAGGAAGCGTTTCCACTTTCTGGGGATCTGCACTTaGTTGGCAGTCATTTTATGG +
Preference number: 4 (lower is better)
Translates to: APGFFWPREVSQRKRFHFLGICT*LAVILW
Trigger: CCATAAAATGACTGCCAATCAAGTGCAGATCCCCAG...AAAGTGGAAACGCTTCCTTTGGGAGACCTCTCTAGGCCAGAAGAACCCAGGTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
CDS-3UTR CCA 90 bp ACACAGGCCAGGCACACCTCAGGTGCCTGGGCCTGTTGGAGTGTAGCTATGTTGCTCTTGCTCATCCACTaGACATTTATGTTCTTCACT +
Preference number: 4 (lower is better)
Translates to: TQARHTSGAWACWSVAMLLLLIH*TFMFFT
Trigger: AGTGAAGAACATAAATGTCCAGTGGATGAGCAAGAG...CAACATAGCTACACTCCAACAGGCCCAGGCACCTGAGGTGTGCCTGGCCTGTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
CDS-3UTR CCA 90 bp GAAGCATGGGTCACTTTCAGGGGTCTTGCTGCTTGCAGGGAGCGTGAGGTTGTGGGATCTGCACTTGATTaGCAGTCATTTTATGGTGGA +
Preference number: 4 (lower is better)
Translates to: EAWVTFRGLAACREREVVGSALD*QSFYGG
Trigger: TCCACCATAAAATGACTGCCAATCAAGTGCAGATCC...CACAACCTCACGCTCCCTGCAAGCAGCAAGACCCCTGAAAGTGACCCATGCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
CDS-3UTR TCA 90 bp TGGCCTAGAGAGGTCTCCCAAAGGAAGCGTTTCCACTTTCTAAATGCAAGGGCCTCTCAGCCTGTTCTGTaGTCAGATCCACATAATTGC +
Preference number: 4 (lower is better)
Translates to: WPREVSQRKRFHFLNARASQPVL*SDPHNC
Trigger: GCAATTATGTGGATCTGATCACAGAACAGGCTGAGA...GGCCCTTGCATTTAGAAAGTGGAAACGCTTCCTTTGGGAGACCTCTCTAGGCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
CDS-3UTR TCA 90 bp GGTGAAAAAGTGCCATTGTCGTTCTACATCATCTGGTTTGGGGGCAGGATGAGGACAGGGGCTTTAAAGTaGGTCTTCTCCGAGGAATCA +
Preference number: 4 (lower is better)
Translates to: GEKVPLSFYIIWFGGRMRTGALK*VFSEES
Trigger: TGATTCCTCGGAGAAGACTCACTTTAAAGCCCCTGT...CCTCATCCTGCCCCCAAACCAGATGATGTAGAACGACAATGGCACTTTTTCACC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
CDS-3UTR GCA 90 bp ACAATCACTAGACATGCAGAATGCCAGCCGGAAGCATGGGTCACTTTCAGGGGTTTCCACTTCTTGTTCTaGCACGGTTTGGACCATTAC +
Preference number: 4 (lower is better)
Translates to: TITRHAECQPEAWVTFRGFHFLF*HGLDHY
Trigger: GTAATGGTCCAAACCGTGGCAGAACAAGAAGTGGAA...ACCCCTGAAAGTGACCCATGCTTCCGGCTGGCATTCTGCATGTCTAGTGATTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
CDS-3UTR CCA 90 bp GCACACCTCAGGTGCCTGGGCCTGTTGGAGTGTAGCTATGTTGGTGGATCCTGTGTTTGGACCATTACATaGAAGAACATTAGGAGAATC +
Preference number: 4 (lower is better)
Translates to: AHLRCLGLLECSYVGGSCVWTIT*KNIRRI
Trigger: GATTCTCCTAATGTTCTTCCATGTAATGGTCCAAAC...ACAGGATCCACCAACATAGCTACACTCCAACAGGCCCAGGCACCTGAGGTGTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
CDS-3UTR CCA 90 bp GGGTTCTTCTGGCCTAGAGAGGTCTCCCAAAGGAAGCGTTTCCACTTTCTAAATTCTTCTGAGGGTCACTaGAGGCCAGAGAAATGGTCT +
Preference number: 4 (lower is better)
Translates to: GFFWPREVSQRKRFHFLNSSEGH*RPEKWS
Trigger: AGACCATTTCTCTGGCCTCCAGTGACCCTCAGAAGA...ATTTAGAAAGTGGAAACGCTTCCTTTGGGAGACCTCTCTAGGCCAGAAGAACCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
CDS-3UTR TCA 90 bp CAAACAACCGTGCGTAGTGTCATTAGACGGGTTCTTGTGCTGCAGAGTCACTGGAGACAAAGTCAGAGATaGTATCAAAGGGCTGGATGT +
Preference number: 4 (lower is better)
Translates to: QTTVRSVIRRVLVLQSHWRQSQR*YQRAGC
Trigger: ACATCCAGCCCTTTGATATCATCTCTGACTTTGTCT...CCAGTGACTCTGCAGCACAAGAACCCGTCTAATGACACTACGCACGGTTGTTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
CDS-3UTR GCA 90 bp TGGCCTAGAGAGGTCTCCCAAAGGAAGCGTTTCCACTTTCTAAATGCAAGGGCCTCAGATCCACATAATTaGTGGCCCACACATCATAAG +
Preference number: 4 (lower is better)
Translates to: WPREVSQRKRFHFLNARASDPHN*WPTHHK
Trigger: CTTATGATGTGTGGGCCAGCAATTATGTGGATCTGA...GGCCCTTGCATTTAGAAAGTGGAAACGCTTCCTTTGGGAGACCTCTCTAGGCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
CDS-3UTR GCA 90 bp CCAAAGGAAGCGTTTCCACTTTCTAAATGCAAGGGCCACATCTTTCTTTCTTTCTCAAAGGGCTGGATGTaGACTGCGGACAGGATCATG +
Preference number: 4 (lower is better)
Translates to: PKEAFPLSKCKGHIFLSFSKGWM*TADRIM
Trigger: CATGATCCTGTCCGCAGTGCACATCCAGCCCTTTGA...GAAAGAAAGAAAGATGTGGCCCTTGCATTTAGAAAGTGGAAACGCTTCCTTTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
CDS-3UTR CCA 90 bp GAAAGCTATTACCCTACTCACCAGCCCCTACTTACTCCGCAGTATGGACACAACGATCCACATAATTGCTaGCCCACACATCATAAGGTA +
Preference number: 4 (lower is better)
Translates to: ESYYPTHQPLLTPQYGHNDPHNC*PTHHKV
Trigger: TACCTTATGATGTGTGGGCCAGCAATTATGTGGATC...GTTGTGTCCATACTGCGGAGTAAGTAGGGGCTGGTGAGTAGGGTAATAGCTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
3UTR CAA 72 bp TGTTGGTGGATCCTGTATACAGGTGAAAAAGTGCCATaGTCGTTCTACATCATCTGGTTTGGGGGCAGGATG +
Preference number: 4 (lower is better)
Translates to: CWWILYTGEKVP*SFYIIWFGGRM
Trigger: CATCCTGCCCCCAAACCAGATGATGTAGAACGACAATGGCACTTTTTCACCTGTATACAGGATCCACCAACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
CDS-3UTR GCA 90 bp TCCCAAAGGAAGCGTTTCCACTTTCTAAATGCAAGGGCCACATCTTTCTTTCTTTACAATAAATTTGGCTaGAAACTCTGCCATGAGACA +
Preference number: 4 (lower is better)
Translates to: SQRKRFHFLNARATSFFLYNKFG*KLCHET
Trigger: TGTCTCATGGCAGAGTTTGCAGCCAAATTTATTGTA...AAGAAAGAAAGATGTGGCCCTTGCATTTAGAAAGTGGAAACGCTTCCTTTGGGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
CDS-3UTR CAA 90 bp AAACAACCGTGCGTAGTGTCATTAGACGGGTTCTTGTGCTGCAGAGTCACTGGGTCCAGCTCCGACTCGTaGTGGCCACAGTGGCCCTTC +
Preference number: 5 (lower is better)
Translates to: KQPCVVSLDGFLCCRVTGSSSDS*WPQWPF
Trigger: GAAGGGCCACTGTGGCCACAACGAGTCGGAGCTGGA...CCCAGTGACTCTGCAGCACAAGAACCCGTCTAATGACACTACGCACGGTTGTTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
CDS-3UTR CAA 90 bp ACACAGGCCAGGCACACCTCAGGTGCCTGGGCCTGTTGGAGTGTAGCTATGTTGCCTGGGGATCTGCACTaGATTGGCAGTCATTTTATG +
Preference number: 5 (lower is better)
Translates to: TQARHTSGAWACWSVAMLPGDLH*IGSHFM
Trigger: CATAAAATGACTGCCAATCAAGTGCAGATCCCCAGG...CAACATAGCTACACTCCAACAGGCCCAGGCACCTGAGGTGTGCCTGGCCTGTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
CDS GCA 90 bp AGGCCCAAGATGAGGCCCAGGATCAGGGGCAGGGTCTCTTCCAACTaGTCTTGCTCATCCACTGGACATTTATGTTCTTCACTGAAGACA +
Preference number: 5 (lower is better)
Translates to: RPKMRPRIRGRVSSN*SCSSTGHLCSSLKT
Trigger: TGTCTTCAGTGAAGAACATAAATGTCCAGTGGATGAGCAAGAGCAGTTGGAAGAGACCCTGCCCCTGATCCTGGGCCTCATCTTGGGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
CDS GCA 90 bp ACTGAAGACAAAGTCAGAGATGATATCAAAGGGCTGGATGTGCACTaGGGACAGGATCATGGTGACAGTCTTCTGAGGGTCACTGGAGGC +
Preference number: 5 (lower is better)
Translates to: TEDKVRDDIKGLDVH*GQDHGDSLLRVTGG
Trigger: GCCTCCAGTGACCCTCAGAAGACTGTCACCATGATCCTGTCCGCAGTGCACATCCAGCCCTTTGATATCATCTCTGACTTTGTCTTCAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
CDS-3UTR CAA 90 bp CAACCGTGCGTAGTGTCATTAGACGGGTTCTTGTGCTGCAGAGTCACTGGGTGCAAGATTTTCCACTTCTaGTTCTGCCACGGTTTGGAC +
Preference number: 5 (lower is better)
Translates to: QPCVVSLDGFLCCRVTGCKIFHF*FCHGLD
Trigger: GTCCAAACCGTGGCAGAACAAGAAGTGGAAAATCTT...GCACCCAGTGACTCTGCAGCACAAGAACCCGTCTAATGACACTACGCACGGTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
CDS-3UTR CAA 90 bp GCTATTACCCTACTCACCAGCCCCTACTTACTCCGCAGTATGGACACAACATCCCTCTTCCAACTGCTCTaGCTCATCCACTGGACATTT +
Preference number: 5 (lower is better)
Translates to: AITLLTSPYLLRSMDTTSLFQLL*LIHWTF
Trigger: AAATGTCCAGTGGATGAGCAAGAGCAGTTGGAAGAG...GGATGTTGTGTCCATACTGCGGAGTAAGTAGGGGCTGGTGAGTAGGGTAATAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
CDS TCA 90 bp CTGGTCCTTTGGAAGTGTTGTGACTTTCCTTTACAAAGAGCATTCTaGGTGTGTAGGCGTGATCTACCCAGAACACCTCCAGCTCCGACT +
Preference number: 5 (lower is better)
Translates to: LVLWKCCDFPLQRAF*VCRRDLPRTPPAPT
Trigger: AGTCGGAGCTGGAGGTGTTCTGGGTAGATCACGCCTACACACTCAGAATGCTCTTTGTAAAGGAAAGTCACAACACTTCCAAAGGACCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
CDS GCA 90 bp GCTGGCCCACACATCATAAGGTACAATAAATTTGGCTGCAAACTCTaGCATGAGACACGTCGTCCCATTTTCCCGCACCACAAATATGTC +
Preference number: 5 (lower is better)
Translates to: AGPHIIRYNKFGCKL*HETRRPIFPHHKYV
Trigger: GACATATTTGTGGTGCGGGAAAATGGGACGACGTGTCTCATGGCAGAGTTTGCAGCCAAATTTATTGTACCTTATGATGTGTGGGCCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057503.7
ENSMUST00000144403.8
CDS GCA 90 bp CACATAATTGCTGGCCCACACATCATAAGGTACAATAAATTTGGCTaGAAACTCTGCCATGAGACACGTCGTCCCATTTTCCCGCACCAC +
Preference number: 5 (lower is better)
Translates to: HIIAGPHIIRYNKFG*KLCHETRRPIFPHH
Trigger: GTGGTGCGGGAAAATGGGACGACGTGTCTCATGGCAGAGTTTGCAGCCAAATTTATTGTACCTTATGATGTGTGGGCCAGCAATTATGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057503.7
ENSMUST00000144403.8
CDS CCA 72 bp CAGAACACCTCCAGCTCCGACTCGTTGTGGCCACAGTaGCCCTTCACCTCAGCTCCCCGGGTCAAGGAGATC +
Preference number: 6 (lower is better)
Translates to: QNTSSSDSLWPQ*PFTSAPRVKEI
Trigger: GATCTCCTTGACCCGGGGAGCTGAGGTGAAGGGCCACTGTGGCCACAACGAGTCGGAGCTGGAGGTGTTCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
CDS TCA 72 bp CAAAGGGCTGGATGTGCACTGCGGACAGGATCATGGTaGCAGTCTTCTGAGGGTCACTGGAGGCCAGAGAAA +
Preference number: 6 (lower is better)
Translates to: QRAGCALRTGSW*QSSEGHWRPEK
Trigger: TTTCTCTGGCCTCCAGTGACCCTCAGAAGACTGTCACCATGATCCTGTCCGCAGTGCACATCCAGCCCTTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
CDS CAA 72 bp GCCCAGGATCAGGGGCAGGGTCTCTTCCAACTGCTCTaGCTCATCCACTGGACATTTATGTTCTTCACTGAA +
Preference number: 6 (lower is better)
Translates to: AQDQGQGLFQLL*LIHWTFMFFTE
Trigger: TTCAGTGAAGAACATAAATGTCCAGTGGATGAGCAAGAGCAGTTGGAAGAGACCCTGCCCCTGATCCTGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
CDS CAA 90 bp CTAGCCCATGTGCTTGTACTGGGAACGGTCCCTGGGGATCTGCACTaGATTGGCAGTCATTTTATGGTGGATGTGGTAGATCACAAGTGT +
Preference number: 6 (lower is better)
Translates to: LAHVLVLGTVPGDLH*IGSHFMVDVVDHKC
Trigger: ACACTTGTGATCTACCACATCCACCATAAAATGACTGCCAATCAAGTGCAGATCCCCAGGGACCGTTCCCAGTACAAGCACATGGGCTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
CDS GCA 72 bp AAAGTCAGAGATGATATCAAAGGGCTGGATGTGCACTaGGGACAGGATCATGGTGACAGTCTTCTGAGGGTC +
Preference number: 6 (lower is better)
Translates to: KVRDDIKGLDVH*GQDHGDSLLRV
Trigger: GACCCTCAGAAGACTGTCACCATGATCCTGTCCGCAGTGCACATCCAGCCCTTTGATATCATCTCTGACTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
CDS CAA 72 bp GTGCTTGTACTGGGAACGGTCCCTGGGGATCTGCACTaGATTGGCAGTCATTTTATGGTGGATGTGGTAGAT +
Preference number: 6 (lower is better)
Translates to: VLVLGTVPGDLH*IGSHFMVDVVD
Trigger: ATCTACCACATCCACCATAAAATGACTGCCAATCAAGTGCAGATCCCCAGGGACCGTTCCCAGTACAAGCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
CDS CCA 72 bp TGTACTGGGAACGGTCCCTGGGGATCTGCACTTGATTaGCAGTCATTTTATGGTGGATGTGGTAGATCACAA +
Preference number: 6 (lower is better)
Translates to: CTGNGPWGSALD*QSFYGGCGRSQ
Trigger: TTGTGATCTACCACATCCACCATAAAATGACTGCCAATCAAGTGCAGATCCCCAGGGACCGTTCCCAGTACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
CDS CAA 72 bp GGGGTTCGTGGAAAGGCCCGAAAGATTTTCCACTTCTaGTTCTGCCACGGTTTGGACCATTACATGGAAGAA +
Preference number: 6 (lower is better)
Translates to: GVRGKARKIFHF*FCHGLDHYMEE
Trigger: TTCTTCCATGTAATGGTCCAAACCGTGGCAGAACAAGAAGTGGAAAATCTTTCGGGCCTTTCCACGAACCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057503.7
ENSMUST00000144403.8
CDS GCA 72 bp CACATCATAAGGTACAATAAATTTGGCTGCAAACTCTaGCATGAGACACGTCGTCCCATTTTCCCGCACCAC +
Preference number: 6 (lower is better)
Translates to: HIIRYNKFGCKL*HETRRPIFPHH
Trigger: GTGGTGCGGGAAAATGGGACGACGTGTCTCATGGCAGAGTTTGCAGCCAAATTTATTGTACCTTATGATGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057503.7
ENSMUST00000144403.8
CDS GCA 72 bp GCTGGCCCACACATCATAAGGTACAATAAATTTGGCTaGAAACTCTGCCATGAGACACGTCGTCCCATTTTC +
Preference number: 6 (lower is better)
Translates to: AGPHIIRYNKFG*KLCHETRRPIF
Trigger: GAAAATGGGACGACGTGTCTCATGGCAGAGTTTGCAGCCAAATTTATTGTACCTTATGATGTGTGGGCCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057503.7
ENSMUST00000144403.8
CDS CCA 72 bp TTTCCCGCACCACAAATATGTCTTTCTCGGGGTTCGTaGAAAGGCCCGAAAGATTTTCCACTTCTTGTTCTG +
Preference number: 6 (lower is better)
Translates to: FPAPQICLSRGS*KGPKDFPLLVL
Trigger: CAGAACAAGAAGTGGAAAATCTTTCGGGCCTTTCCACGAACCCCGAGAAAGACATATTTGTGGTGCGGGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057503.7
ENSMUST00000144403.8
CDS CCA 72 bp GGGCAGGGTCTCTTCCAACTGCTCTTGCTCATCCACTaGACATTTATGTTCTTCACTGAAGACAAAGTCAGA +
Preference number: 6 (lower is better)
Translates to: GQGLFQLLLLIH*TFMFFTEDKVR
Trigger: TCTGACTTTGTCTTCAGTGAAGAACATAAATGTCCAGTGGATGAGCAAGAGCAGTTGGAAGAGACCCTGCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
CDS TCA 72 bp TGGAAGTGTTGTGACTTTCCTTTACAAAGAGCATTCTaGGTGTGTAGGCGTGATCTACCCAGAACACCTCCA +
Preference number: 6 (lower is better)
Translates to: WKCCDFPLQRAF*VCRRDLPRTPP
Trigger: TGGAGGTGTTCTGGGTAGATCACGCCTACACACTCAGAATGCTCTTTGTAAAGGAAAGTCACAACACTTCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7
CDS CCA 72 bp GCACCTTGTTCAGATTCCAAGTCGCCTCTGGTCCTTTaGAAGTGTTGTGACTTTCCTTTACAAAGAGCATTC +
Preference number: 6 (lower is better)
Translates to: APCSDSKSPLVL*KCCDFPLQRAF
Trigger: GAATGCTCTTTGTAAAGGAAAGTCACAACACTTCCAAAGGACCAGAGGCGACTTGGAATCTGAACAAGGTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057503.7