Pregenerated sensors for LAMP3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000041247Ensembl transcript IDs: ENSMUST00000081880.7
Found 102 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ACTCATGGGTTCTTGGAGTTGGAGGGCTTGGCTGCCCGGGATGCGTaGGACATCTTCACTGCAGGCGCTGGGAAGCGGGACATGGGCACC | + |
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Preference number: 1 (lower is better) Translates to: THGFLELEGLAARDA*DIFTAGAGKRDMGT Trigger: GGTGCCCATGTCCCGCTTCCCAGCGCCTGCAGTGAAGATGTCCCACGCATCCCGGGCAGCCAAGCCCTCCAACTCCAAGAACCCATGAGT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| 3UTR GCA 90 bp | GAAGACTCATGGGTTCTTGGAGTTGGAGGGCTTGGCTGCCCGGGATaGGTGGGACATCTTCACTGCAGGCGCTGGGAAGCGGGACATGGG | + |
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Preference number: 1 (lower is better) Translates to: EDSWVLGVGGLGCPG*VGHLHCRRWEAGHG Trigger: CCCATGTCCCGCTTCCCAGCGCCTGCAGTGAAGATGTCCCACGCATCCCGGGCAGCCAAGCCCTCCAACTCCAAGAACCCATGAGTCTTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| 3UTR CCA 90 bp | TCGTCCAACTCGCTCCCCGCCGATGTCCACGTCAAAGAAGACTCATaGGTTCTTGGAGTTGGAGGGCTTGGCTGCCCGGGATGCGTGGGA | + |
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Preference number: 1 (lower is better) Translates to: SSNSLPADVHVKEDS*VLGVGGLGCPGCVG Trigger: TCCCACGCATCCCGGGCAGCCAAGCCCTCCAACTCCAAGAACCCATGAGTCTTCTTTGACGTGGACATCGGCGGGGAGCGAGTTGGACGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| 3UTR GCA 90 bp | CACGTCAAAGAAGACTCATGGGTTCTTGGAGTTGGAGGGCTTGGCTaGCCGGGATGCGTGGGACATCTTCACTGCAGGCGCTGGGAAGCG | + |
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Preference number: 1 (lower is better) Translates to: HVKEDSWVLGVGGLG*PGCVGHLHCRRWEA Trigger: CGCTTCCCAGCGCCTGCAGTGAAGATGTCCCACGCATCCCGGGCAGCCAAGCCCTCCAACTCCAAGAACCCATGAGTCTTCTTTGACGTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| 3UTR CCA 90 bp | CCCCGCCGATGTCCACGTCAAAGAAGACTCATGGGTTCTTGGAGTTaGAGGGCTTGGCTGCCCGGGATGCGTGGGACATCTTCACTGCAG | + |
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Preference number: 1 (lower is better) Translates to: PRRCPRQRRLMGSWS*RAWLPGMRGTSSLQ Trigger: CTGCAGTGAAGATGTCCCACGCATCCCGGGCAGCCAAGCCCTCCAACTCCAAGAACCCATGAGTCTTCTTTGACGTGGACATCGGCGGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| 3UTR CCA 90 bp | CTCGCTCCCCGCCGATGTCCACGTCAAAGAAGACTCATGGGTTCTTaGAGTTGGAGGGCTTGGCTGCCCGGGATGCGTGGGACATCTTCA | + |
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Preference number: 1 (lower is better) Translates to: LAPRRCPRQRRLMGS*SWRAWLPGMRGTSS Trigger: TGAAGATGTCCCACGCATCCCGGGCAGCCAAGCCCTCCAACTCCAAGAACCCATGAGTCTTCTTTGACGTGGACATCGGCGGGGAGCGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| 3UTR CCA 90 bp | TGTCCACGTCAAAGAAGACTCATGGGTTCTTGGAGTTGGAGGGCTTaGCTGCCCGGGATGCGTGGGACATCTTCACTGCAGGCGCTGGGA | + |
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Preference number: 1 (lower is better) Translates to: CPRQRRLMGSWSWRA*LPGMRGTSSLQALG Trigger: TCCCAGCGCCTGCAGTGAAGATGTCCCACGCATCCCGGGCAGCCAAGCCCTCCAACTCCAAGAACCCATGAGTCTTCTTTGACGTGGACA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| 3UTR GCA 90 bp | GACATCTTCACTGCAGGCGCTGGGAAGCGGGACATGGGCACCTTGTaGATGAGACCGGATCAAACTCTATCAGGCACCTATTTCTTAATC | + |
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Preference number: 1 (lower is better) Translates to: DIFTAGAGKRDMGTL*MRPDQTLSGTYFLI Trigger: GATTAAGAAATAGGTGCCTGATAGAGTTTGATCCGGTCTCATGCACAAGGTGCCCATGTCCCGCTTCCCAGCGCCTGCAGTGAAGATGTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| 3UTR CCA 90 bp | ACCAAATACCACATGTTTCCCATCCAAATGAGGAGTTGGAACTATTaGGGCCTGCATTTGCCATGCTCAGCAAACCCTCCCGATCATGCT | + |
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Preference number: 1 (lower is better) Translates to: TKYHMFPIQMRSWNY*GLHLPCSANPPDHA Trigger: AGCATGATCGGGAGGGTTTGCTGAGCATGGCAAATGCAGGCCCCAATAGTTCCAACTCCTCATTTGGATGGGAAACATGTGGTATTTGGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| 3UTR GCA 90 bp | GAAGGGTCCATTTCAAGAGCCTCTAAGCAACTGTCAGTTGCCCCCTaGCAATTTGACATCTTCAGCTTACAGGCACCAATATTCAGCACA | + |
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Preference number: 1 (lower is better) Translates to: EGSISRASKQLSVAP*QFDIFSLQAPIFST Trigger: TGTGCTGAATATTGGTGCCTGTAAGCTGAAGATGTCAAATTGGCAGGGGGCAACTGACAGTTGCTTAGAGGCTCTTGAAATGGACCCTTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| 3UTR GCA 90 bp | AGCTTACAGGCACCAATATTCAGCACACAACTTAAGGCTATAGGTTaGAGTCTGGGTCTACCTGCTTTCTCAGTAACAGCCTTTGAACTA | + |
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Preference number: 1 (lower is better) Translates to: SLQAPIFSTQLKAIG*SLGLPAFSVTAFEL Trigger: TAGTTCAAAGGCTGTTACTGAGAAAGCAGGTAGACCCAGACTGCAACCTATAGCCTTAAGTTGTGTGCTGAATATTGGTGCCTGTAAGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| 3UTR TCA 90 bp | CACCATTTACATTTTCAAGCATCCTTGCCACACCTAGCCCTTTTATaGCTTGACCAAATACCACATGTTTCCCATCCAAATGAGGAGTTG | + |
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Preference number: 1 (lower is better) Translates to: HHLHFQASLPHLALL*LDQIPHVSHPNEEL Trigger: CAACTCCTCATTTGGATGGGAAACATGTGGTATTTGGTCAAGTCATAAAAGGGCTAGGTGTGGCAAGGATGCTTGAAAATGTAAATGGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| 3UTR CCA 90 bp | TCTTTCTGTGCCTTTATCATTTGTTTGACTTTAAGCAATTCTGCCTaGATAGCTTTATCTCCTGGAGCTATCTCCTGTGCCTTCTTAAGA | + |
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Preference number: 1 (lower is better) Translates to: SFCAFIICLTLSNSA*IALSPGAISCAFLR Trigger: TCTTAAGAAGGCACAGGAGATAGCTCCAGGAGATAAAGCTATCCAGGCAGAATTGCTTAAAGTCAAACAAATGATAAAGGCACAGAAAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| 3UTR GCA 90 bp | TTTATCTTTCTGTGCCTTTATCATTTGTTTGACTTTAAGCAATTCTaGCTGGATAGCTTTATCTCCTGGAGCTATCTCCTGTGCCTTCTT | + |
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Preference number: 1 (lower is better) Translates to: FIFLCLYHLFDFKQF*LDSFISWSYLLCLL Trigger: AAGAAGGCACAGGAGATAGCTCCAGGAGATAAAGCTATCCAGGCAGAATTGCTTAAAGTCAAACAAATGATAAAGGCACAGAAAGATAAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| 3UTR CAA 90 bp | ACTCGCTCCCCGCCGATGTCCACGTCAAAGAAGACTCATGGGTTCTaGGAGTTGGAGGGCTTGGCTGCCCGGGATGCGTGGGACATCTTC | + |
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Preference number: 2 (lower is better) Translates to: TRSPPMSTSKKTHGF*ELEGLAARDAWDIF Trigger: GAAGATGTCCCACGCATCCCGGGCAGCCAAGCCCTCCAACTCCAAGAACCCATGAGTCTTCTTTGACGTGGACATCGGCGGGGAGCGAGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| 3UTR-3UTR CCA 90 bp | CACGTCAAAGAAGACTCATGGGTTCTTGGAGTTGGAGGGCTTGGCTGCCCGGGACTTCACTGCAGGCGCTaGGAAGCGGGACATGGGCAC | + |
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Preference number: 2 (lower is better) Translates to: HVKEDSWVLGVGGLGCPGLHCRR*EAGHGH Trigger: GTGCCCATGTCCCGCTTCCCAGCGCCTGCAGTGAAG...TCCCGGGCAGCCAAGCCCTCCAACTCCAAGAACCCATGAGTCTTCTTTGACGTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| 3UTR CAA 90 bp | ATGTCCACGTCAAAGAAGACTCATGGGTTCTTGGAGTTGGAGGGCTaGGCTGCCCGGGATGCGTGGGACATCTTCACTGCAGGCGCTGGG | + |
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Preference number: 2 (lower is better) Translates to: MSTSKKTHGFLELEG*AARDAWDIFTAGAG Trigger: CCCAGCGCCTGCAGTGAAGATGTCCCACGCATCCCGGGCAGCCAAGCCCTCCAACTCCAAGAACCCATGAGTCTTCTTTGACGTGGACAT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| 3UTR CAA 90 bp | TCCCCGCCGATGTCCACGTCAAAGAAGACTCATGGGTTCTTGGAGTaGGAGGGCTTGGCTGCCCGGGATGCGTGGGACATCTTCACTGCA | + |
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Preference number: 2 (lower is better) Translates to: SPPMSTSKKTHGFLE*EGLAARDAWDIFTA Trigger: TGCAGTGAAGATGTCCCACGCATCCCGGGCAGCCAAGCCCTCCAACTCCAAGAACCCATGAGTCTTCTTTGACGTGGACATCGGCGGGGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| 3UTR-3UTR GCA 90 bp | TCCATTTCAAGAGCCTCTAAGCAACTGTCAGTTGCCCCCTGCCAATTTGACATCGTTGGAGGGCTTGGCTaGCCGGGATGCGTGGGACAT | + |
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Preference number: 2 (lower is better) Translates to: SISRASKQLSVAPCQFDIVGGLG*PGCVGH Trigger: ATGTCCCACGCATCCCGGGCAGCCAAGCCCTCCAAC...GATGTCAAATTGGCAGGGGGCAACTGACAGTTGCTTAGAGGCTCTTGAAATGGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| 3UTR-3UTR CCA 90 bp | GAGGAGTTGGAACTATTGGGGCCTGCATTTGCCATGCTCAGCAAACCCTCCCGAAGACTCATGGGTTCTTaGAGTTGGAGGGCTTGGCTG | + |
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Preference number: 2 (lower is better) Translates to: EELELLGPAFAMLSKPSRRLMGS*SWRAWL Trigger: CAGCCAAGCCCTCCAACTCCAAGAACCCATGAGTCT...TCGGGAGGGTTTGCTGAGCATGGCAAATGCAGGCCCCAATAGTTCCAACTCCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| 3UTR CAA 90 bp | TGGGACATCTTCACTGCAGGCGCTGGGAAGCGGGACATGGGCACCTaGTGCATGAGACCGGATCAAACTCTATCAGGCACCTATTTCTTA | + |
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Preference number: 2 (lower is better) Translates to: WDIFTAGAGKRDMGT*CMRPDQTLSGTYFL Trigger: TAAGAAATAGGTGCCTGATAGAGTTTGATCCGGTCTCATGCACAAGGTGCCCATGTCCCGCTTCCCAGCGCCTGCAGTGAAGATGTCCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| 3UTR CAA 90 bp | GACCAAATACCACATGTTTCCCATCCAAATGAGGAGTTGGAACTATaGGGGCCTGCATTTGCCATGCTCAGCAAACCCTCCCGATCATGC | + |
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Preference number: 2 (lower is better) Translates to: DQIPHVSHPNEELEL*GPAFAMLSKPSRSC Trigger: GCATGATCGGGAGGGTTTGCTGAGCATGGCAAATGCAGGCCCCAATAGTTCCAACTCCTCATTTGGATGGGAAACATGTGGTATTTGGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| 3UTR-3UTR CCA 90 bp | ACAGAGTTTGGCAGGTTTTTCACCATTTACATTTTCAAGCATCCTTGCCACACCATGGGTTCTTGGAGTTaGAGGGCTTGGCTGCCCGGG | + |
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Preference number: 2 (lower is better) Translates to: TEFGRFFTIYIFKHPCHTMGSWS*RAWLPG Trigger: CCCGGGCAGCCAAGCCCTCCAACTCCAAGAACCCAT...GGTGTGGCAAGGATGCTTGAAAATGTAAATGGTGAAAAACCTGCCAAACTCTGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| 3UTR-3UTR GCA 90 bp | AGCAATTCTGCCTGGATAGCTTTATCTCCTGGAGCTATCTCCTGTGCCTTCTTACTGTCAGTTGCCCCCTaGCAATTTGACATCTTCAGC | + |
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Preference number: 2 (lower is better) Translates to: SNSAWIALSPGAISCAFLLSVAP*QFDIFS Trigger: GCTGAAGATGTCAAATTGGCAGGGGGCAACTGACAG...TAAGAAGGCACAGGAGATAGCTCCAGGAGATAAAGCTATCCAGGCAGAATTGCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| 3UTR-3UTR GCA 90 bp | AGTTGGAACTATTGGGGCCTGCATTTGCCATGCTCAGCAAACCCTCCCGATCATCACCATAAATACTTTTaGCACCTGTCCCATTCTGAT | + |
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Preference number: 2 (lower is better) Translates to: SWNYWGLHLPCSANPPDHHHKYF*HLSHSD Trigger: ATCAGAATGGGACAGGTGGCAAAAGTATTTATGGTG...ATGATCGGGAGGGTTTGCTGAGCATGGCAAATGCAGGCCCCAATAGTTCCAACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| 3UTR CAA 90 bp | CCATTTCAAGAGCCTCTAAGCAACTGTCAGTTGCCCCCTGCCAATTaGACATCTTCAGCTTACAGGCACCAATATTCAGCACACAACTTA | + |
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Preference number: 2 (lower is better) Translates to: PFQEPLSNCQLPPAN*TSSAYRHQYSAHNL Trigger: TAAGTTGTGTGCTGAATATTGGTGCCTGTAAGCTGAAGATGTCAAATTGGCAGGGGGCAACTGACAGTTGCTTAGAGGCTCTTGAAATGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| 3UTR-3UTR CCA 90 bp | AAGGCTATAGGTTGCAGTCTGGGTCTACCTGCTTTCTCAGTAACAGCCTTTGAAATCCAAATGAGGAGTTaGAACTATTGGGGCCTGCAT | + |
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Preference number: 2 (lower is better) Translates to: KAIGCSLGLPAFSVTAFEIQMRS*NYWGLH Trigger: ATGCAGGCCCCAATAGTTCCAACTCCTCATTTGGAT...TTCAAAGGCTGTTACTGAGAAAGCAGGTAGACCCAGACTGCAACCTATAGCCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| 3UTR-3UTR CCA 90 bp | ACAGAGTTTGGCAGGTTTTTCACCATTTACATTTTCAAGCATCCTTGCCACACCGTCAAAGAAGACTCATaGGTTCTTGGAGTTGGAGGG | + |
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Preference number: 2 (lower is better) Translates to: TEFGRFFTIYIFKHPCHTVKEDS*VLGVGG Trigger: CCCTCCAACTCCAAGAACCCATGAGTCTTCTTTGAC...GGTGTGGCAAGGATGCTTGAAAATGTAAATGGTGAAAAACCTGCCAAACTCTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| 3UTR-3UTR TCA 90 bp | CTGGGTCTACCTGCTTTCTCAGTAACAGCCTTTGAACTATCCACATACCTTAAATGTTTCCCATCCAAATaGGGAGTTGGAACTATTGGG | + |
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Preference number: 2 (lower is better) Translates to: LGLPAFSVTAFELSTYLKCFPSK*GVGTIG Trigger: CCCAATAGTTCCAACTCCTCATTTGGATGGGAAACA...TTTAAGGTATGTGGATAGTTCAAAGGCTGTTACTGAGAAAGCAGGTAGACCCAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| 3UTR CAA 90 bp | TGCCTTCTTAAGATCAGCCAATGCTTGATCATATTCCTTCAATCCTaGCCATCCTTGGCTTTTCGGTACAGTGCTTTAGTATTTGAAGGG | + |
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Preference number: 2 (lower is better) Translates to: CLLKISQCLIIFLQS*PSLAFRYSALVFEG Trigger: CCCTTCAAATACTAAAGCACTGTACCGAAAAGCCAAGGATGGCAAGGATTGAAGGAATATGATCAAGCATTGGCTGATCTTAAGAAGGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| 3UTR CAA 90 bp | AAGATCAGCCAATGCTTGATCATATTCCTTCAATCCTTGCCATCCTaGGCTTTTCGGTACAGTGCTTTAGTATTTGAAGGGTCCATTTCA | + |
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Preference number: 2 (lower is better) Translates to: KISQCLIIFLQSLPS*AFRYSALVFEGSIS Trigger: TGAAATGGACCCTTCAAATACTAAAGCACTGTACCGAAAAGCCAAGGATGGCAAGGATTGAAGGAATATGATCAAGCATTGGCTGATCTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| 3UTR GCA 72 bp | TGGGTTCTTGGAGTTGGAGGGCTTGGCTGCCCGGGATaGGTGGGACATCTTCACTGCAGGCGCTGGGAAGCG | + |
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Preference number: 3 (lower is better) Translates to: WVLGVGGLGCPG*VGHLHCRRWEA Trigger: CGCTTCCCAGCGCCTGCAGTGAAGATGTCCCACGCATCCCGGGCAGCCAAGCCCTCCAACTCCAAGAACCCA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| 3UTR CCA 72 bp | TTCTTGGAGTTGGAGGGCTTGGCTGCCCGGGATGCGTaGGACATCTTCACTGCAGGCGCTGGGAAGCGGGAC | + |
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Preference number: 3 (lower is better) Translates to: FLELEGLAARDA*DIFTAGAGKRD Trigger: GTCCCGCTTCCCAGCGCCTGCAGTGAAGATGTCCCACGCATCCCGGGCAGCCAAGCCCTCCAACTCCAAGAA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| 3UTR GCA 72 bp | GAAGACTCATGGGTTCTTGGAGTTGGAGGGCTTGGCTaGCCGGGATGCGTGGGACATCTTCACTGCAGGCGC | + |
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Preference number: 3 (lower is better) Translates to: EDSWVLGVGGLG*PGCVGHLHCRR Trigger: GCGCCTGCAGTGAAGATGTCCCACGCATCCCGGGCAGCCAAGCCCTCCAACTCCAAGAACCCATGAGTCTTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| 3UTR CCA 72 bp | CGCCGATGTCCACGTCAAAGAAGACTCATGGGTTCTTaGAGTTGGAGGGCTTGGCTGCCCGGGATGCGTGGG | + |
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Preference number: 3 (lower is better) Translates to: RRCPRQRRLMGS*SWRAWLPGMRG Trigger: CCCACGCATCCCGGGCAGCCAAGCCCTCCAACTCCAAGAACCCATGAGTCTTCTTTGACGTGGACATCGGCG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| 3UTR CCA 72 bp | TCGCTCCCCGCCGATGTCCACGTCAAAGAAGACTCATaGGTTCTTGGAGTTGGAGGGCTTGGCTGCCCGGGA | + |
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Preference number: 3 (lower is better) Translates to: SLPADVHVKEDS*VLGVGGLGCPG Trigger: TCCCGGGCAGCCAAGCCCTCCAACTCCAAGAACCCATGAGTCTTCTTTGACGTGGACATCGGCGGGGAGCGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| 3UTR-3UTR CAA 90 bp | TCAAGAGCCTCTAAGCAACTGTCAGTTGCCCCCTGCCAATTTGACATCTTCAGCTTGGAGTTGGAGGGCTaGGCTGCCCGGGATGCGTGG | + |
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Preference number: 3 (lower is better) Translates to: SRASKQLSVAPCQFDIFSLELEG*AARDAW Trigger: CCACGCATCCCGGGCAGCCAAGCCCTCCAACTCCAA...GCTGAAGATGTCAAATTGGCAGGGGGCAACTGACAGTTGCTTAGAGGCTCTTGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| 3UTR GCA 72 bp | ACTGCAGGCGCTGGGAAGCGGGACATGGGCACCTTGTaGATGAGACCGGATCAAACTCTATCAGGCACCTAT | + |
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Preference number: 3 (lower is better) Translates to: TAGAGKRDMGTL*MRPDQTLSGTY Trigger: ATAGGTGCCTGATAGAGTTTGATCCGGTCTCATGCACAAGGTGCCCATGTCCCGCTTCCCAGCGCCTGCAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| 3UTR CCA 72 bp | CAAAGAAGACTCATGGGTTCTTGGAGTTGGAGGGCTTaGCTGCCCGGGATGCGTGGGACATCTTCACTGCAG | + |
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Preference number: 3 (lower is better) Translates to: QRRLMGSWSWRA*LPGMRGTSSLQ Trigger: CTGCAGTGAAGATGTCCCACGCATCCCGGGCAGCCAAGCCCTCCAACTCCAAGAACCCATGAGTCTTCTTTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| 3UTR CCA 72 bp | TGTCCACGTCAAAGAAGACTCATGGGTTCTTGGAGTTaGAGGGCTTGGCTGCCCGGGATGCGTGGGACATCT | + |
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Preference number: 3 (lower is better) Translates to: CPRQRRLMGSWS*RAWLPGMRGTS Trigger: AGATGTCCCACGCATCCCGGGCAGCCAAGCCCTCCAACTCCAAGAACCCATGAGTCTTCTTTGACGTGGACA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| 3UTR TCA 72 bp | CAGGCGCTGGGAAGCGGGACATGGGCACCTTGTGCATaGGACCGGATCAAACTCTATCAGGCACCTATTTCT | + |
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Preference number: 3 (lower is better) Translates to: QALGSGTWAPCA*DRIKLYQAPIS Trigger: AGAAATAGGTGCCTGATAGAGTTTGATCCGGTCTCATGCACAAGGTGCCCATGTCCCGCTTCCCAGCGCCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| 3UTR-3UTR CAA 90 bp | AAGGCTATAGGTTGCAGTCTGGGTCTACCTGCTTTCTCAGTAACAGCCTTTGAACGGGACATGGGCACCTaGTGCATGAGACCGGATCAA | + |
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Preference number: 3 (lower is better) Translates to: KAIGCSLGLPAFSVTAFERDMGT*CMRPDQ Trigger: TTGATCCGGTCTCATGCACAAGGTGCCCATGTCCCG...TTCAAAGGCTGTTACTGAGAAAGCAGGTAGACCCAGACTGCAACCTATAGCCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| 3UTR GCA 72 bp | GCACCAATATTCAGCACACAACTTAAGGCTATAGGTTaGAGTCTGGGTCTACCTGCTTTCTCAGTAACAGCC | + |
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Preference number: 3 (lower is better) Translates to: APIFSTQLKAIG*SLGLPAFSVTA Trigger: GGCTGTTACTGAGAAAGCAGGTAGACCCAGACTGCAACCTATAGCCTTAAGTTGTGTGCTGAATATTGGTGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| 3UTR-3UTR CAA 90 bp | AACACAGAGTTTGGCAGGTTTTTCACCATTTACATTTTCAAGCATCCTTGCCACTATTGGGGCCTGCATTaGCCATGCTCAGCAAACCCT | + |
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Preference number: 3 (lower is better) Translates to: NTEFGRFFTIYIFKHPCHYWGLH*PCSANP Trigger: AGGGTTTGCTGAGCATGGCAAATGCAGGCCCCAATA...GTGGCAAGGATGCTTGAAAATGTAAATGGTGAAAAACCTGCCAAACTCTGTGTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| 3UTR-3UTR CAA 90 bp | AAGGCTATAGGTTGCAGTCTGGGTCTACCTGCTTTCTCAGTAACAGCCTTTGAACATTTTCAAGCATCCTaGCCACACCTAGCCCTTTTA | + |
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Preference number: 3 (lower is better) Translates to: KAIGCSLGLPAFSVTAFEHFQAS*PHLALL Trigger: TAAAAGGGCTAGGTGTGGCAAGGATGCTTGAAAATG...TTCAAAGGCTGTTACTGAGAAAGCAGGTAGACCCAGACTGCAACCTATAGCCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| 3UTR GCA 72 bp | ATTTCAAGAGCCTCTAAGCAACTGTCAGTTGCCCCCTaGCAATTTGACATCTTCAGCTTACAGGCACCAATA | + |
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Preference number: 3 (lower is better) Translates to: ISRASKQLSVAP*QFDIFSLQAPI Trigger: TATTGGTGCCTGTAAGCTGAAGATGTCAAATTGGCAGGGGGCAACTGACAGTTGCTTAGAGGCTCTTGAAAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| 3UTR GCA 72 bp | TGCCTGGATAGCTTTATCTCCTGGAGCTATCTCCTGTaGCTTCTTAAGATCAGCCAATGCTTGATCATATTC | + |
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Preference number: 3 (lower is better) Translates to: CLDSFISWSYLL*LLKISQCLIIF Trigger: GAATATGATCAAGCATTGGCTGATCTTAAGAAGGCACAGGAGATAGCTCCAGGAGATAAAGCTATCCAGGCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| 3UTR CCA 72 bp | TTCTTAATAATTTGGTGGAAAGGGCATCCTTTAAAATaGAGAGGCTTCCCGGTCGTGGACCCAGTTCCTTTT | + |
|
Preference number: 3 (lower is better) Translates to: FLIIWWKGHPLK*RGFPVVDPVPF Trigger: AAAAGGAACTGGGTCCACGACCGGGAAGCCTCTCCATTTTAAAGGATGCCCTTTCCACCAAATTATTAAGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
||
| 3UTR CCA 72 bp | GCCTTTATCATTTGTTTGACTTTAAGCAATTCTGCCTaGATAGCTTTATCTCCTGGAGCTATCTCCTGTGCC | + |
|
Preference number: 3 (lower is better) Translates to: AFIICLTLSNSA*IALSPGAISCA Trigger: GGCACAGGAGATAGCTCCAGGAGATAAAGCTATCCAGGCAGAATTGCTTAAAGTCAAACAAATGATAAAGGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
||
| 3UTR CAA 72 bp | CCGCCGATGTCCACGTCAAAGAAGACTCATGGGTTCTaGGAGTTGGAGGGCTTGGCTGCCCGGGATGCGTGG | + |
|
Preference number: 4 (lower is better) Translates to: PPMSTSKKTHGF*ELEGLAARDAW Trigger: CCACGCATCCCGGGCAGCCAAGCCCTCCAACTCCAAGAACCCATGAGTCTTCTTTGACGTGGACATCGGCGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
||
| 3UTR CAA 72 bp | TTCACTGCAGGCGCTGGGAAGCGGGACATGGGCACCTaGTGCATGAGACCGGATCAAACTCTATCAGGCACC | + |
|
Preference number: 4 (lower is better) Translates to: FTAGAGKRDMGT*CMRPDQTLSGT Trigger: GGTGCCTGATAGAGTTTGATCCGGTCTCATGCACAAGGTGCCCATGTCCCGCTTCCCAGCGCCTGCAGTGAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
||
| 3UTR CAA 72 bp | ATGTCCACGTCAAAGAAGACTCATGGGTTCTTGGAGTaGGAGGGCTTGGCTGCCCGGGATGCGTGGGACATC | + |
|
Preference number: 4 (lower is better) Translates to: MSTSKKTHGFLE*EGLAARDAWDI Trigger: GATGTCCCACGCATCCCGGGCAGCCAAGCCCTCCAACTCCAAGAACCCATGAGTCTTCTTTGACGTGGACAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
||
| CDS-3UTR TCA 90 bp | ACTCATGGGTTCTTGGAGTTGGAGGGCTTGGCTGCCCGGGATGCGTGGGACATCAAAGGTATAACTAGCTaGGCTGATGGGTGGAAGGCT | + |
|
Preference number: 4 (lower is better) Translates to: THGFLELEGLAARDAWDIKGITS*ADGWKA Trigger: AGCCTTCCACCCATCAGCTCAGCTAGTTATACCTTT...GATGTCCCACGCATCCCGGGCAGCCAAGCCCTCCAACTCCAAGAACCCATGAGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
||
| 3UTR CAA 72 bp | TCAAAGAAGACTCATGGGTTCTTGGAGTTGGAGGGCTaGGCTGCCCGGGATGCGTGGGACATCTTCACTGCA | + |
|
Preference number: 4 (lower is better) Translates to: SKKTHGFLELEG*AARDAWDIFTA Trigger: TGCAGTGAAGATGTCCCACGCATCCCGGGCAGCCAAGCCCTCCAACTCCAAGAACCCATGAGTCTTCTTTGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
||
| CDS-3UTR CCA 90 bp | ATGCGTGGGACATCTTCACTGCAGGCGCTGGGAAGCGGGACATGGGCACCTTGTGAGTTGGCCTCTGATTaGTTGTGCTTTTGTGTGATG | + |
|
Preference number: 4 (lower is better) Translates to: MRGTSSLQALGSGTWAPCELASD*LCFCVM Trigger: CATCACACAAAAGCACAACCAATCAGAGGCCAACTC...ACAAGGTGCCCATGTCCCGCTTCCCAGCGCCTGCAGTGAAGATGTCCCACGCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
||
| CDS-3UTR CCA 90 bp | ACTCATGGGTTCTTGGAGTTGGAGGGCTTGGCTGCCCGGGATGCGTGGGACATCATTAGTGGACAGAGTTaGCCTCTGATTGGTTGTGCT | + |
|
Preference number: 4 (lower is better) Translates to: THGFLELEGLAARDAWDIISGQS*PLIGCA Trigger: AGCACAACCAATCAGAGGCCAACTCTGTCCACTAAT...GATGTCCCACGCATCCCGGGCAGCCAAGCCCTCCAACTCCAAGAACCCATGAGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
||
| CDS-3UTR TCA 90 bp | GAGGAGTTGGAACTATTGGGGCCTGCATTTGCCATGCTCAGCAAACCCTCCCGATCTCTGGTATGCAGATaGCTGATGCCTTTGGCGGAT | + |
|
Preference number: 4 (lower is better) Translates to: EELELLGPAFAMLSKPSRSLVCR*LMPLAD Trigger: ATCCGCCAAAGGCATCAGTCATCTGCATACCAGAGA...TCGGGAGGGTTTGCTGAGCATGGCAAATGCAGGCCCCAATAGTTCCAACTCCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
||
| CDS-3UTR TCA 90 bp | CACGTCAAAGAAGACTCATGGGTTCTTGGAGTTGGAGGGCTTGGCTGCCCGGGATCCAAATCCTTTTCTTaGACAATCAGTGCTAGTCCC | + |
|
Preference number: 4 (lower is better) Translates to: HVKEDSWVLGVGGLGCPGSKSFS*TISASP Trigger: GGGACTAGCACTGATTGTTCAAGAAAAGGATTTGGA...TCCCGGGCAGCCAAGCCCTCCAACTCCAAGAACCCATGAGTCTTCTTTGACGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
||
| 3UTR CAA 72 bp | ATCCAAATGAGGAGTTGGAACTATTGGGGCCTGCATTaGCCATGCTCAGCAAACCCTCCCGATCATGCTTAT | + |
|
Preference number: 4 (lower is better) Translates to: IQMRSWNYWGLH*PCSANPPDHAY Trigger: ATAAGCATGATCGGGAGGGTTTGCTGAGCATGGCAAATGCAGGCCCCAATAGTTCCAACTCCTCATTTGGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
||
| 3UTR CAA 72 bp | GACCAAATACCACATGTTTCCCATCCAAATGAGGAGTaGGAACTATTGGGGCCTGCATTTGCCATGCTCAGC | + |
|
Preference number: 4 (lower is better) Translates to: DQIPHVSHPNEE*ELLGPAFAMLS Trigger: GCTGAGCATGGCAAATGCAGGCCCCAATAGTTCCAACTCCTCATTTGGATGGGAAACATGTGGTATTTGGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
||
| 3UTR CAA 72 bp | GAGCCTCTAAGCAACTGTCAGTTGCCCCCTGCCAATTaGACATCTTCAGCTTACAGGCACCAATATTCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: EPLSNCQLPPAN*TSSAYRHQYSA Trigger: TGCTGAATATTGGTGCCTGTAAGCTGAAGATGTCAAATTGGCAGGGGGCAACTGACAGTTGCTTAGAGGCTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
||
| 3UTR CAA 72 bp | AAGGGTCCATTTCAAGAGCCTCTAAGCAACTGTCAGTaGCCCCCTGCCAATTTGACATCTTCAGCTTACAGG | + |
|
Preference number: 4 (lower is better) Translates to: KGPFQEPLSNCQ*PPANLTSSAYR Trigger: CCTGTAAGCTGAAGATGTCAAATTGGCAGGGGGCAACTGACAGTTGCTTAGAGGCTCTTGAAATGGACCCTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
||
| CDS-3UTR GCA 90 bp | AGCAATTCTGCCTGGATAGCTTTATCTCCTGGAGCTATCTCCTGTGCCTTCTTAGAAGAGTACAGCTACTaGAGAGATCTGCCCAGGCAT | + |
|
Preference number: 4 (lower is better) Translates to: SNSAWIALSPGAISCAFLEEYSY*RDLPRH Trigger: ATGCCTGGGCAGATCTCTGCAGTAGCTGTACTCTTC...TAAGAAGGCACAGGAGATAGCTCCAGGAGATAAAGCTATCCAGGCAGAATTGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
||
| CDS-3UTR GCA 90 bp | CACGTCAAAGAAGACTCATGGGTTCTTGGAGTTGGAGGGCTTGGCTGCCCGGGAGAAATATCTTTGGGTTaGAGAATCCAAATCCTTTTC | + |
|
Preference number: 4 (lower is better) Translates to: HVKEDSWVLGVGGLGCPGEISLG*RIQILF Trigger: GAAAAGGATTTGGATTCTGCAACCCAAAGATATTTC...TCCCGGGCAGCCAAGCCCTCCAACTCCAAGAACCCATGAGTCTTCTTTGACGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
||
| CDS-3UTR CCA 90 bp | GTCCACGTCAAAGAAGACTCATGGGTTCTTGGAGTTGGAGGGCTTGGCTGCCCGGTTTTCATTGTTATATaGGCTGTGTTTTCAATGGCT | + |
|
Preference number: 4 (lower is better) Translates to: VHVKEDSWVLGVGGLGCPVFIVI*AVFSMA Trigger: AGCCATTGAAAACACAGCCCATATAACAATGAAAAC...CGGGCAGCCAAGCCCTCCAACTCCAAGAACCCATGAGTCTTCTTTGACGTGGAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
||
| CDS-3UTR CCA 90 bp | ATTTGGTGGAAAGGGCATCCTTTAAAATGGAGAGGCTTCCCGGTCGTGGACCCACATAAGTTCCGATCTTaGCTGGTGATGACCAAGTTA | + |
|
Preference number: 4 (lower is better) Translates to: IWWKGHPLKWRGFPVVDPHKFRS*LVMTKL Trigger: TAACTTGGTCATCACCAGCCAAGATCGGAACTTATG...TGGGTCCACGACCGGGAAGCCTCTCCATTTTAAAGGATGCCCTTTCCACCAAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
||
| CDS-3UTR TCA 90 bp | TTCAGCACACAACTTAAGGCTATAGGTTGCAGTCTGGGTCTACCTGCTTTCTCAGGCTGGGGTCAATGTTaGAATATCTTTGGGTTGCAG | + |
|
Preference number: 4 (lower is better) Translates to: FSTQLKAIGCSLGLPAFSGWGQC*NIFGLQ Trigger: CTGCAACCCAAAGATATTTCAACATTGACCCCAGCC...TGAGAAAGCAGGTAGACCCAGACTGCAACCTATAGCCTTAAGTTGTGTGCTGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
||
| CDS-3UTR GCA 90 bp | ACAGAGTTTGGCAGGTTTTTCACCATTTACATTTTCAAGCATCCTTGCCACACCGACAGCTGGATGCTCTaGTCACTGACACACTTGAAG | + |
|
Preference number: 4 (lower is better) Translates to: TEFGRFFTIYIFKHPCHTDSWML*SLTHLK Trigger: CTTCAAGTGTGTCAGTGAGCAGAGCATCCAGCTGTC...GGTGTGGCAAGGATGCTTGAAAATGTAAATGGTGAAAAACCTGCCAAACTCTGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
||
| CDS-3UTR TCA 90 bp | TTCAGCACACAACTTAAGGCTATAGGTTGCAGTCTGGGTCTACCTGCTTTCTCATGTGTTTTCAATGGCTaGAGTTTCAGCAGCCATTTG | + |
|
Preference number: 4 (lower is better) Translates to: FSTQLKAIGCSLGLPAFSCVFNG*SFSSHL Trigger: CAAATGGCTGCTGAAACTTCAGCCATTGAAAACACA...TGAGAAAGCAGGTAGACCCAGACTGCAACCTATAGCCTTAAGTTGTGTGCTGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
||
| CDS-3UTR TCA 90 bp | TCCATTTCAAGAGCCTCTAAGCAACTGTCAGTTGCCCCCTGCCAATTTGACATCAGTCTTCTCTGTATTTaGGATGGTCAAATATGCTCC | + |
|
Preference number: 4 (lower is better) Translates to: SISRASKQLSVAPCQFDISLLCI*DGQICS Trigger: GGAGCATATTTGACCATCTCAAATACAGAGAAGACT...GATGTCAAATTGGCAGGGGGCAACTGACAGTTGCTTAGAGGCTCTTGAAATGGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
||
| CDS-3UTR CCA 90 bp | AAGGCTATAGGTTGCAGTCTGGGTCTACCTGCTTTCTCAGTAACAGCCTTTGAATTCACAGATCCACCCTaGAAATTCAAGAAGAGGTTG | + |
|
Preference number: 4 (lower is better) Translates to: KAIGCSLGLPAFSVTAFEFTDPP*KFKKRL Trigger: CAACCTCTTCTTGAATTTCCAGGGTGGATCTGTGAA...TTCAAAGGCTGTTACTGAGAAAGCAGGTAGACCCAGACTGCAACCTATAGCCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
||
| CDS-3UTR CCA 90 bp | TCAAGAGCCTCTAAGCAACTGTCAGTTGCCCCCTGCCAATTTGACATCTTCAGCAATTCAAGAAGAGGTTaGATTTTTGGGAGTCACATT | + |
|
Preference number: 4 (lower is better) Translates to: SRASKQLSVAPCQFDIFSNSRRG*IFGSHI Trigger: AATGTGACTCCCAAAAATCCAACCTCTTCTTGAATT...GCTGAAGATGTCAAATTGGCAGGGGGCAACTGACAGTTGCTTAGAGGCTCTTGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
||
| CDS-3UTR GCA 90 bp | ACAGAGTTTGGCAGGTTTTTCACCATTTACATTTTCAAGCATCCTTGCCACACCACACACTTGAAGGAATaGCCAACTACTGTCTCAAAC | + |
|
Preference number: 4 (lower is better) Translates to: TEFGRFFTIYIFKHPCHTTHLKE*PTTVSN Trigger: GTTTGAGACAGTAGTTGGGCATTCCTTCAAGTGTGT...GGTGTGGCAAGGATGCTTGAAAATGTAAATGGTGAAAAACCTGCCAAACTCTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
||
| CDS-3UTR CCA 90 bp | AGCAATTCTGCCTGGATAGCTTTATCTCCTGGAGCTATCTCCTGTGCCTTCTTAGCTCTTTGTAGTTACTaGGGTTACTGTTTTCATTGT | + |
|
Preference number: 4 (lower is better) Translates to: SNSAWIALSPGAISCAFLALCSY*GYCFHC Trigger: ACAATGAAAACAGTAACCCCAGTAACTACAAAGAGC...TAAGAAGGCACAGGAGATAGCTCCAGGAGATAAAGCTATCCAGGCAGAATTGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
||
| 3UTR CAA 72 bp | CAATGCTTGATCATATTCCTTCAATCCTTGCCATCCTaGGCTTTTCGGTACAGTGCTTTAGTATTTGAAGGG | + |
|
Preference number: 4 (lower is better) Translates to: QCLIIFLQSLPS*AFRYSALVFEG Trigger: CCCTTCAAATACTAAAGCACTGTACCGAAAAGCCAAGGATGGCAAGGATTGAAGGAATATGATCAAGCATTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
||
| CDS-3UTR CCA 90 bp | AGCAATTCTGCCTGGATAGCTTTATCTCCTGGAGCTATCTCCTGTGCCTTCTTAATGTTGAAATATCTTTaGGTTGCAGAATCCAAATCC | + |
|
Preference number: 4 (lower is better) Translates to: SNSAWIALSPGAISCAFLMLKYL*VAESKS Trigger: GGATTTGGATTCTGCAACCCAAAGATATTTCAACAT...TAAGAAGGCACAGGAGATAGCTCCAGGAGATAAAGCTATCCAGGCAGAATTGCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
||
| CDS-3UTR CCA 90 bp | AGCAATTCTGCCTGGATAGCTTTATCTCCTGGAGCTATCTCCTGTGCCTTCTTATCTCTGTATTTGAGATaGTCAAATATGCTCCAACTT | + |
|
Preference number: 4 (lower is better) Translates to: SNSAWIALSPGAISCAFLSLYLR*SNMLQL Trigger: AAGTTGGAGCATATTTGACCATCTCAAATACAGAGA...TAAGAAGGCACAGGAGATAGCTCCAGGAGATAAAGCTATCCAGGCAGAATTGCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
||
| CDS-3UTR TCA 90 bp | AACACAGAGTTTGGCAGGTTTTTCACCATTTACATTTTCAAGCATCCTTGCCACGGTTGTGCTTTTGTGTaGTGCTGTGAAAAATGTTTT | + |
|
Preference number: 4 (lower is better) Translates to: NTEFGRFFTIYIFKHPCHGCAFV*CCEKCF Trigger: AAAACATTTTTCACAGCATCACACAAAAGCACAACC...GTGGCAAGGATGCTTGAAAATGTAAATGGTGAAAAACCTGCCAAACTCTGTGTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
||
| CDS-3UTR CAA 90 bp | ACTCATGGGTTCTTGGAGTTGGAGGGCTTGGCTGCCCGGGATGCGTGGGACATCTGCTCACTGACACACTaGAAGGAATGCCCAACTACT | + |
|
Preference number: 5 (lower is better) Translates to: THGFLELEGLAARDAWDICSLTH*KECPTT Trigger: AGTAGTTGGGCATTCCTTCAAGTGTGTCAGTGAGCA...GATGTCCCACGCATCCCGGGCAGCCAAGCCCTCCAACTCCAAGAACCCATGAGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
||
| CDS-3UTR CAA 90 bp | CACGTCAAAGAAGACTCATGGGTTCTTGGAGTTGGAGGGCTTGGCTGCCCGGGATTGGCCTCTGATTGGTaGTGCTTTTGTGTGATGCTG | + |
|
Preference number: 5 (lower is better) Translates to: HVKEDSWVLGVGGLGCPGLASDW*CFCVML Trigger: CAGCATCACACAAAAGCACAACCAATCAGAGGCCAA...TCCCGGGCAGCCAAGCCCTCCAACTCCAAGAACCCATGAGTCTTCTTTGACGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
||
| CDS-3UTR CAA 90 bp | CACGTCAAAGAAGACTCATGGGTTCTTGGAGTTGGAGGGCTTGGCTGCCCGGGAGTCGTTGATCTGTCCTaGTGTGTAGGTGTTGATGTT | + |
|
Preference number: 5 (lower is better) Translates to: HVKEDSWVLGVGGLGCPGVVDLS*CVGVDV Trigger: AACATCAACACCTACACACAAGGACAGATCAACGAC...TCCCGGGCAGCCAAGCCCTCCAACTCCAAGAACCCATGAGTCTTCTTTGACGTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
||
| CDS-3UTR CAA 90 bp | GTCCACGTCAAAGAAGACTCATGGGTTCTTGGAGTTGGAGGGCTTGGCTGCCCGAGGCTGGGGTCAATGTaGAAATATCTTTGGGTTGCA | + |
|
Preference number: 5 (lower is better) Translates to: VHVKEDSWVLGVGGLGCPRLGSM*KYLWVA Trigger: TGCAACCCAAAGATATTTCAACATTGACCCCAGCCT...CGGGCAGCCAAGCCCTCCAACTCCAAGAACCCATGAGTCTTCTTTGACGTGGAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
||
| CDS-3UTR CAA 90 bp | ATGCGTGGGACATCTTCACTGCAGGCGCTGGGAAGCGGGACATGGGCACCTTGTAGTTTCAGCAGCCATTaGAATGTAATCATCCTTGAA | + |
|
Preference number: 5 (lower is better) Translates to: MRGTSSLQALGSGTWAPCSFSSH*NVIILE Trigger: TTCAAGGATGATTACATTCAAATGGCTGCTGAAACT...ACAAGGTGCCCATGTCCCGCTTCCCAGCGCCTGCAGTGAAGATGTCCCACGCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
||
| CDS-3UTR CAA 90 bp | GAGGAGTTGGAACTATTGGGGCCTGCATTTGCCATGCTCAGCAAACCCTCCCGACTGGTAAATGTGCAATaGAGCCAGAGCCAATGGTAT | + |
|
Preference number: 5 (lower is better) Translates to: EELELLGPAFAMLSKPSRLVNVQ*SQSQWY Trigger: ATACCATTGGCTCTGGCTCAATTGCACATTTACCAG...TCGGGAGGGTTTGCTGAGCATGGCAAATGCAGGCCCCAATAGTTCCAACTCCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
||
| CDS-3UTR CAA 90 bp | GTCCACGTCAAAGAAGACTCATGGGTTCTTGGAGTTGGAGGGCTTGGCTGCCCGTCTGTTCTGCTGATGTaGCAGTATATTGAAGATAGC | + |
|
Preference number: 5 (lower is better) Translates to: VHVKEDSWVLGVGGLGCPSVLLM*QYIEDS Trigger: GCTATCTTCAATATACTGCAACATCAGCAGAACAGA...CGGGCAGCCAAGCCCTCCAACTCCAAGAACCCATGAGTCTTCTTTGACGTGGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
||
| CDS-3UTR CAA 90 bp | CACGTCAAAGAAGACTCATGGGTTCTTGGAGTTGGAGGGCTTGGCTGCCCGGGAGGGTTACTGTTTTCATaGTTATATGGGCTGTGTTTT | + |
|
Preference number: 5 (lower is better) Translates to: HVKEDSWVLGVGGLGCPGGLLFS*LYGLCF Trigger: AAAACACAGCCCATATAACAATGAAAACAGTAACCC...TCCCGGGCAGCCAAGCCCTCCAACTCCAAGAACCCATGAGTCTTCTTTGACGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
||
| CDS-3UTR CAA 90 bp | GAGGAGTTGGAACTATTGGGGCCTGCATTTGCCATGCTCAGCAAACCCTCCCGAAAGTCTTCTCTGTATTaGAGATGGTCAAATATGCTC | + |
|
Preference number: 5 (lower is better) Translates to: EELELLGPAFAMLSKPSRKSSLY*RWSNML Trigger: GAGCATATTTGACCATCTCAAATACAGAGAAGACTT...TCGGGAGGGTTTGCTGAGCATGGCAAATGCAGGCCCCAATAGTTCCAACTCCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
||
| CDS TCA 90 bp | AAAGGCCTGAAGGTGGATATTCATTGTTTTCATTTGAAGCTGAGCTaGCAGCTGGATGCTCTGCTCACTGACACACTTGAAGGAATGCCC | + |
|
Preference number: 5 (lower is better) Translates to: KGLKVDIHCFHLKLS*QLDALLTDTLEGMP Trigger: GGGCATTCCTTCAAGTGTGTCAGTGAGCAGAGCATCCAGCTGTCAGCTCAGCTTCAAATGAAAACAATGAATATCCACCTTCAGGCCTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
||
| CDS CCA 90 bp | ATATTCACAGATCCACCCTGGAAATTCAAGAAGAGGTTGGATTTTTaGGAGTCACATTTCCCAGATGCATGGGTTAGGCTGGGGTCAATG | + |
|
Preference number: 5 (lower is better) Translates to: IFTDPPWKFKKRLDF*ESHFPDAWVRLGSM Trigger: CATTGACCCCAGCCTAACCCATGCATCTGGGAAATGTGACTCCCAAAAATCCAACCTCTTCTTGAATTTCCAGGGTGGATCTGTGAATAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
||
| CDS GCA 90 bp | TTTGTAAACACTCAGACCCACAACACAGATGACGACCACGATGATTaGAACCATAGGAAGCACAACTGTGTAGTCAGACAAACACTCGTT | + |
|
Preference number: 5 (lower is better) Translates to: FVNTQTHNTDDDHDD*NHRKHNCVVRQTLV Trigger: AACGAGTGTTTGTCTGACTACACAGTTGTGCTTCCTATGGTTGCAATCATCGTGGTCGTCATCTGTGTTGTGGGTCTGAGTGTTTACAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
||
| CDS TCA 90 bp | GGGAGTCACATTTCCCAGATGCATGGGTTAGGCTGGGGTCAATGTTaGAATATCTTTGGGTTGCAGAATCCAAATCCTTTTCTTGAACAA | + |
|
Preference number: 5 (lower is better) Translates to: GSHISQMHGLGWGQC*NIFGLQNPNPFLEQ Trigger: TTGTTCAAGAAAAGGATTTGGATTCTGCAACCCAAAGATATTTCAACATTGACCCCAGCCTAACCCATGCATCTGGGAAATGTGACTCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
||
| CDS CCA 90 bp | TTCAAGAAGAGGTTGGATTTTTGGGAGTCACATTTCCCAGATGCATaGGTTAGGCTGGGGTCAATGTTGAAATATCTTTGGGTTGCAGAA | + |
|
Preference number: 5 (lower is better) Translates to: FKKRLDFWESHFPDA*VRLGSMLKYLWVAE Trigger: TTCTGCAACCCAAAGATATTTCAACATTGACCCCAGCCTAACCCATGCATCTGGGAAATGTGACTCCCAAAAATCCAACCTCTTCTTGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
||
| CDS-3UTR CAA 90 bp | TCCATTTCAAGAGCCTCTAAGCAACTGTCAGTTGCCCCCTGCCAATTTGACATCGAAGGTGGATATTCATaGTTTTCATTTGAAGCTGAG | + |
|
Preference number: 5 (lower is better) Translates to: SISRASKQLSVAPCQFDIEGGYS*FSFEAE Trigger: CTCAGCTTCAAATGAAAACAATGAATATCCACCTTC...GATGTCAAATTGGCAGGGGGCAACTGACAGTTGCTTAGAGGCTCTTGAAATGGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
||
| CDS-3UTR CAA 90 bp | AACACAGAGTTTGGCAGGTTTTTCACCATTTACATTTTCAAGCATCCTTGCCACGAAGAGGTTGGATTTTaGGGAGTCACATTTCCCAGA | + |
|
Preference number: 5 (lower is better) Translates to: NTEFGRFFTIYIFKHPCHEEVGF*GVTFPR Trigger: TCTGGGAAATGTGACTCCCAAAAATCCAACCTCTTC...GTGGCAAGGATGCTTGAAAATGTAAATGGTGAAAAACCTGCCAAACTCTGTGTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
||
| CDS GCA 72 bp | ACTCAGACCCACAACACAGATGACGACCACGATGATTaGAACCATAGGAAGCACAACTGTGTAGTCAGACAA | + |
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Preference number: 6 (lower is better) Translates to: TQTHNTDDDHDD*NHRKHNCVVRQ Trigger: TTGTCTGACTACACAGTTGTGCTTCCTATGGTTGCAATCATCGTGGTCGTCATCTGTGTTGTGGGTCTGAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| CDS CAA 72 bp | GGAACTAGGGGAACAGGTGAGGTCGTTGATCTGTCCTaGTGTGTAGGTGTTGATGTTCCTAAGACATTAGTG | + |
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Preference number: 6 (lower is better) Translates to: GTRGTGEVVDLS*CVGVDVPKTLV Trigger: CACTAATGTCTTAGGAACATCAACACCTACACACAAGGACAGATCAACGACCTCACCTGTTCCCCTAGTTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| CDS TCA 72 bp | GTGTGCGTTATTAGATCTGACAAAGGTATAACTAGCTaGGCTGATGGGTGGAAGGCTCTTTGTAGTTACTGG | + |
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Preference number: 6 (lower is better) Translates to: VCVIRSDKGITS*ADGWKALCSYW Trigger: CCAGTAACTACAAAGAGCCTTCCACCCATCAGCTCAGCTAGTTATACCTTTGTCAGATCTAATAACGCACAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| CDS GCA 72 bp | AGCTGGATGCTCTGCTCACTGACACACTTGAAGGAATaGCCAACTACTGTCTCAAACATCATCAAAGTATTC | + |
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Preference number: 6 (lower is better) Translates to: SWMLCSLTHLKE*PTTVSNIIKVF Trigger: GAATACTTTGATGATGTTTGAGACAGTAGTTGGGCATTCCTTCAAGTGTGTCAGTGAGCAGAGCATCCAGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| CDS CAA 72 bp | GAAAAATGTTTTGGGAAGGGTAGTCTGACCACCAAGTaGTGTAGCTCTCCCAGTTATATAGTTGACAATGGC | + |
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Preference number: 6 (lower is better) Translates to: EKCFGKGSLTTK*CSSPSYIVDNG Trigger: GCCATTGTCAACTATATAACTGGGAGAGCTACACAACTTGGTGGTCAGACTACCCTTCCCAAAACATTTTTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| CDS TCA 72 bp | ATTTCCCAGATGCATGGGTTAGGCTGGGGTCAATGTTaGAATATCTTTGGGTTGCAGAATCCAAATCCTTTT | + |
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Preference number: 6 (lower is better) Translates to: ISQMHGLGWGQC*NIFGLQNPNPF Trigger: AAAAGGATTTGGATTCTGCAACCCAAAGATATTTCAACATTGACCCCAGCCTAACCCATGCATCTGGGAAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| CDS TCA 72 bp | CTGAAGTTTCAGCAGCCATTTGAATGTAATCATCCTTaGATCTTGATGCTAAAGTTATATGAGATCTTTGGT | + |
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Preference number: 6 (lower is better) Translates to: LKFQQPFECNHP*ILMLKLYEIFG Trigger: ACCAAAGATCTCATATAACTTTAGCATCAAGATTCAAGGATGATTACATTCAAATGGCTGCTGAAACTTCAG 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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| CDS TCA 72 bp | AGTATTCTTCTTTCCCTGGTAAGTCTTCTCTGTATTTaGGATGGTCAAATATGCTCCAACTTCACTAATATA | + |
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Preference number: 6 (lower is better) Translates to: SILLSLVSLLCI*DGQICSNFTNI Trigger: TATATTAGTGAAGTTGGAGCATATTTGACCATCTCAAATACAGAGAAGACTTACCAGGGAAAGAAGAATACT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081880.7 |
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