Pregenerated sensors for LAMP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031447Ensembl transcript IDs: ENSMUST00000033824.8
Found 75 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | GAGGTTGACCCTGTGCGTGCCTGTGTGGCAAGCCTTCCCTGCTCCCGTTTGCTTGTTTGCCAGAAAGTGTaGCTCCCTTCCACACCTATC | + |
|
Preference number: 2 (lower is better) Translates to: EVDPVRACVASLPCSRLLVCQKV*LPSTPI Trigger: GATAGGTGTGGAAGGGAGGCACACTTTCTGGCAAAC...AAGCAAACGGGAGCAGGGAAGGCTTGCCACACAGGCACGCACAGGGTCAACCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| 3UTR-3UTR GCA 90 bp | GTGCAGAGACAGGGCCACCCTGAACGCCAACACAAGACTGGAAATCACTTTACAACCATCAGCCACCCTTaGCAGGCCCAAGGGTCTGGA | + |
|
Preference number: 2 (lower is better) Translates to: VQRQGHPERQHKTGNHFTTISHP*QAQGSG Trigger: TCCAGACCCTTGGGCCTGGCAAGGGTGGCTGATGGT...TGTAAAGTGATTTCCAGTCTTGTGTTGGCGTTCAGGGTGGCCCTGTCTCTGCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| 3UTR-3UTR CCA 90 bp | GTGCAGAGACAGGGCCACCCTGAACGCCAACACAAGACTGGAAATCACTTTACACCAGGCCCAAGGGTCTaGACCAGAGATTCCCTTTGT | + |
|
Preference number: 2 (lower is better) Translates to: VQRQGHPERQHKTGNHFTPGPRV*TRDSLC Trigger: ACAAAGGGAATCTCTGGTCCAGACCCTTGGGCCTGG...TGTAAAGTGATTTCCAGTCTTGTGTTGGCGTTCAGGGTGGCCCTGTCTCTGCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| 3UTR CAA 90 bp | CAACCCACCTACGCTGCAAGACACGTCAGCAGTGTGAATCTATTATaGTACACAGTGCAGAGACAGGGCCACCCTGAACGCCAACACAAG | + |
|
Preference number: 2 (lower is better) Translates to: QPTYAARHVSSVNLL*YTVQRQGHPERQHK Trigger: CTTGTGTTGGCGTTCAGGGTGGCCCTGTCTCTGCACTGTGTACAATAATAGATTCACACTGCTGACGTGTCTTGCAGCGTAGGTGGGTTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| 3UTR-3UTR GCA 90 bp | GTGCAGAGACAGGGCCACCCTGAACGCCAACACAAGACTGGAAATCACTTTACATTCCCTGCTCCCGTTTaGTTCTTAAGTGTGCAGCCT | + |
|
Preference number: 2 (lower is better) Translates to: VQRQGHPERQHKTGNHFTFPAPV*FLSVQP Trigger: AGGCTGCACACTTAAGAAGCAAACGGGAGCAGGGAA...TGTAAAGTGATTTCCAGTCTTGTGTTGGCGTTCAGGGTGGCCCTGTCTCTGCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| 3UTR TCA 72 bp | CCCAGGCCAGGTAGCCCAAGCCAAGTGTCCAGAGGTTaGCCCTGTGCGTGCCTGTGTGGCAAGCCTTCCCTG | + |
|
Preference number: 3 (lower is better) Translates to: PRPGSPSQVSRG*PCACLCGKPSL Trigger: CAGGGAAGGCTTGCCACACAGGCACGCACAGGGTCAACCTCTGGACACTTGGCTTGGGCTACCTGGCCTGGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| 3UTR-3UTR CAA 90 bp | GCCAAGTGTCCAGAGGTTGACCCTGTGCGTGCCTGTGTGGCAAGCCTTCCCTGCAACCATCAGCCACCCTaGCCAGGCCCAAGGGTCTGG | + |
|
Preference number: 3 (lower is better) Translates to: AKCPEVDPVRACVASLPCNHQPP*PGPRVW Trigger: CCAGACCCTTGGGCCTGGCAAGGGTGGCTGATGGTT...GCAGGGAAGGCTTGCCACACAGGCACGCACAGGGTCAACCTCTGGACACTTGGC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| 3UTR TCA 72 bp | GTGCCTCCCTTCCACACCTATCTAAGCTTGGGGATGTaGGAACAGGCCCCTGTGCATCTCTGGTGCACCTGC | + |
|
Preference number: 3 (lower is better) Translates to: VPPFHTYLSLGM*EQAPVHLWCTC Trigger: GCAGGTGCACCAGAGATGCACAGGGGCCTGTTCTCACATCCCCAAGCTTAGATAGGTGTGGAAGGGAGGCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| 3UTR GCA 72 bp | TGCGTGCCTGTGTGGCAAGCCTTCCCTGCTCCCGTTTaGTTCTTAAGTGTGCAGCCTAACCATCAGCCACCC | + |
|
Preference number: 3 (lower is better) Translates to: CVPVWQAFPAPV*FLSVQPNHQPP Trigger: GGGTGGCTGATGGTTAGGCTGCACACTTAAGAAGCAAACGGGAGCAGGGAAGGCTTGCCACACAGGCACGCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| 3UTR CCA 72 bp | CCAAGTGTCCAGAGGTTGACCCTGTGCGTGCCTGTGTaGCAAGCCTTCCCTGCTCCCGTTTGCTTCTTAAGT | + |
|
Preference number: 3 (lower is better) Translates to: PSVQRLTLCVPV*QAFPAPVCFLS Trigger: ACTTAAGAAGCAAACGGGAGCAGGGAAGGCTTGCCACACAGGCACGCACAGGGTCAACCTCTGGACACTTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| 3UTR-3UTR CAA 90 bp | CTACGCTGCAAGACACGTCAGCAGTGTGAATCTATTATTGTACACAGTGCAGAGCCAAGTGTCCAGAGGTaGACCCTGTGCGTGCCTGTG | + |
|
Preference number: 3 (lower is better) Translates to: LRCKTRQQCESIIVHSAEPSVQR*TLCVPV Trigger: CACAGGCACGCACAGGGTCAACCTCTGGACACTTGG...CTCTGCACTGTGTACAATAATAGATTCACACTGCTGACGTGTCTTGCAGCGTAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS-3UTR CCA 90 bp | GCCAAGTGTCCAGAGGTTGACCCTGTGCGTGCCTGTGTGGCAAGCCTTCCCTGCATACAGTGGGGTTTGTaGGCACAAGTGGTGGTGAGG | + |
|
Preference number: 4 (lower is better) Translates to: AKCPEVDPVRACVASLPCIQWGL*AQVVVR Trigger: CCTCACCACCACTTGTGCCCACAAACCCCACTGTAT...GCAGGGAAGGCTTGCCACACAGGCACGCACAGGGTCAACCTCTGGACACTTGGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS-3UTR CCA 90 bp | GCCAAGTGTCCAGAGGTTGACCCTGTGCGTGCCTGTGTGGCAAGCCTTCCCTGCTACTTCTGCAGAGGCTaGCAGGGAAATGTTCACGAT | + |
|
Preference number: 4 (lower is better) Translates to: AKCPEVDPVRACVASLPCYFCRG*QGNVHD Trigger: ATCGTGAACATTTCCCTGCCAGCCTCTGCAGAAGTA...GCAGGGAAGGCTTGCCACACAGGCACGCACAGGGTCAACCTCTGGACACTTGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS-3UTR TCA 90 bp | GCCAAGTGTCCAGAGGTTGACCCTGTGCGTGCCTGTGTGGCAAGCCTTCCCTGCCCTTTTTCAGGTAGGTaGTATTCAGTTGCAGTGCCA | + |
|
Preference number: 4 (lower is better) Translates to: AKCPEVDPVRACVASLPCPFSGR*YSVAVP Trigger: TGGCACTGCAACTGAATATCACCTACCTGAAAAAGG...GCAGGGAAGGCTTGCCACACAGGCACGCACAGGGTCAACCTCTGGACACTTGGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS-3UTR CCA 90 bp | GTGCAGAGACAGGGCCACCCTGAACGCCAACACAAGACTGGAAATCACTTTACAGGGTGGCCCAGTGGTTaGGGAAGGTCCATCCTGTGT | + |
|
Preference number: 4 (lower is better) Translates to: VQRQGHPERQHKTGNHFTGWPSG*GRSILC Trigger: ACACAGGATGGACCTTCCCCAACCACTGGGCCACCC...TGTAAAGTGATTTCCAGTCTTGTGTTGGCGTTCAGGGTGGCCCTGTCTCTGCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS-3UTR GCA 90 bp | GAGGTTGACCCTGTGCGTGCCTGTGTGGCAAGCCTTCCCTGCTCCCGTTTGCTTACTGACACACCGGTATaGTTTGTTGATGTCTGCCTT | + |
|
Preference number: 4 (lower is better) Translates to: EVDPVRACVASLPCSRLLTDTPV*FVDVCL Trigger: AAGGCAGACATCAACAAAGCATACCGGTGTGTCAGT...AAGCAAACGGGAGCAGGGAAGGCTTGCCACACAGGCACGCACAGGGTCAACCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS-3UTR CCA 90 bp | GAGGTTGACCCTGTGCGTGCCTGTGTGGCAAGCCTTCCCTGCTCCCGTTTGCTTAGAGCTTTCAGTGAATaGTTGGAGATGCTGAATGTG | + |
|
Preference number: 4 (lower is better) Translates to: EVDPVRACVASLPCSRLLRAFSE*LEMLNV Trigger: CACATTCAGCATCTCCAACCATTCACTGAAAGCTCT...AAGCAAACGGGAGCAGGGAAGGCTTGCCACACAGGCACGCACAGGGTCAACCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS-3UTR TCA 90 bp | GTGCAGAGACAGGGCCACCCTGAACGCCAACACAAGACTGGAAATCACTTTACAGTGTCTCTTCCTTGCTaGAGTTGCCACTCGACAGGT | + |
|
Preference number: 4 (lower is better) Translates to: VQRQGHPERQHKTGNHFTVSLPC*SCHSTG Trigger: ACCTGTCGAGTGGCAACTTCAGCAAGGAAGAGACAC...TGTAAAGTGATTTCCAGTCTTGTGTTGGCGTTCAGGGTGGCCCTGTCTCTGCAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS-3UTR GCA 90 bp | AAGAACCAAACACCAAGTCTTAAAAGTCAAATCAGTGGAGCCTTCTCATCCTCTGATGAGGACCAGCCCTaGCAGGGCACCGCCCACAGC | + |
|
Preference number: 4 (lower is better) Translates to: KNQTPSLKSQISGAFSSSDEDQP*QGTAHS Trigger: GCTGTGGGCGGTGCCCTGGCAGGGCTGGTCCTCATC...AGAGGATGAGAAGGCTCCACTGATTTGACTTTTAAGACTTGGTGTTTGGTTCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS-3UTR CCA 90 bp | GTGCAGAGACAGGGCCACCCTGAACGCCAACACAAGACTGGAAATCACTTTACATCGCAGTCTCGTAGGTaGTCAGAAAGGAGGCAGAGA | + |
|
Preference number: 4 (lower is better) Translates to: VQRQGHPERQHKTGNHFTSQSRR*SERRQR Trigger: TCTCTGCCTCCTTTCTGACCACCTACGAGACTGCGA...TGTAAAGTGATTTCCAGTCTTGTGTTGGCGTTCAGGGTGGCCCTGTCTCTGCAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS-3UTR TCA 90 bp | GTGCAGAGACAGGGCCACCCTGAACGCCAACACAAGACTGGAAATCACTTTACAAATGGTTGGAGATGCTaGATGTGGGCACTAGGGCAT | + |
|
Preference number: 4 (lower is better) Translates to: VQRQGHPERQHKTGNHFTNGWRC*MWALGH Trigger: ATGCCCTAGTGCCCACATTCAGCATCTCCAACCATT...TGTAAAGTGATTTCCAGTCTTGTGTTGGCGTTCAGGGTGGCCCTGTCTCTGCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS-3UTR GCA 90 bp | GAGGTTGACCCTGTGCGTGCCTGTGTGGCAAGCCTTCCCTGCTCCCGTTTGCTTCTTTACCACAAGAACTaGCATTTTTCAGTACTTCTG | + |
|
Preference number: 4 (lower is better) Translates to: EVDPVRACVASLPCSRLLLYHKN*HFSVLL Trigger: CAGAAGTACTGAAAAATGGCAGTTCTTGTGGTAAAG...AAGCAAACGGGAGCAGGGAAGGCTTGCCACACAGGCACGCACAGGGTCAACCTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS-3UTR GCA 90 bp | GTGCAGAGACAGGGCCACCCTGAACGCCAACACAAGACTGGAAATCACTTTACAAAGGTCCATCCTGTGTaGAGTGTGTCTCTTCCTTGC | + |
|
Preference number: 4 (lower is better) Translates to: VQRQGHPERQHKTGNHFTKVHPV*SVSLPC Trigger: GCAAGGAAGAGACACACTGCACACAGGATGGACCTT...TGTAAAGTGATTTCCAGTCTTGTGTTGGCGTTCAGGGTGGCCCTGTCTCTGCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| 3UTR CAA 72 bp | TACGCTGCAAGACACGTCAGCAGTGTGAATCTATTATaGTACACAGTGCAGAGACAGGGCCACCCTGAACGC | + |
|
Preference number: 4 (lower is better) Translates to: YAARHVSSVNLL*YTVQRQGHPER Trigger: GCGTTCAGGGTGGCCCTGTCTCTGCACTGTGTACAATAATAGATTCACACTGCTGACGTGTCTTGCAGCGTA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS-3UTR TCA 90 bp | CTACGCTGCAAGACACGTCAGCAGTGTGAATCTATTATTGTACACAGTGCAGAGTTTCCCACAGTGGCCTaGAGAGCTTTCAGTGAATGG | + |
|
Preference number: 4 (lower is better) Translates to: LRCKTRQQCESIIVHSAEFPTVA*RAFSEW Trigger: CCATTCACTGAAAGCTCTTCAGGCCACTGTGGGAAA...CTCTGCACTGTGTACAATAATAGATTCACACTGCTGACGTGTCTTGCAGCGTAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS-3UTR GCA 90 bp | GTGCAGAGACAGGGCCACCCTGAACGCCAACACAAGACTGGAAATCACTTTACAATTTTTCAGTACTTCTaGAGAGGCTGGCAGGGAAAT | + |
|
Preference number: 4 (lower is better) Translates to: VQRQGHPERQHKTGNHFTIFQYF*RGWQGN Trigger: ATTTCCCTGCCAGCCTCTGCAGAAGTACTGAAAAAT...TGTAAAGTGATTTCCAGTCTTGTGTTGGCGTTCAGGGTGGCCCTGTCTCTGCAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS-3UTR CCA 90 bp | CTACGCTGCAAGACACGTCAGCAGTGTGAATCTATTATTGTACACAGTGCAGAGTCCACCTTGAAAGCCTaGACCTGCACACTGAAGACA | + |
|
Preference number: 4 (lower is better) Translates to: LRCKTRQQCESIIVHSAESTLKA*TCTLKT Trigger: TGTCTTCAGTGTGCAGGTCCAGGCTTTCAAGGTGGA...CTCTGCACTGTGTACAATAATAGATTCACACTGCTGACGTGTCTTGCAGCGTAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS-3UTR GCA 90 bp | CTACGCTGCAAGACACGTCAGCAGTGTGAATCTATTATTGTACACAGTGCAGAGGCATTCATCCCAAACTaGAATTCCAGGGCTCTGTTC | + |
|
Preference number: 4 (lower is better) Translates to: LRCKTRQQCESIIVHSAEAFIPN*NSRALF Trigger: GAACAGAGCCCTGGAATTGCAGTTTGGGATGAATGC...CTCTGCACTGTGTACAATAATAGATTCACACTGCTGACGTGTCTTGCAGCGTAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS-3UTR GCA 90 bp | CTACGCTGCAAGACACGTCAGCAGTGTGAATCTATTATTGTACACAGTGCAGAGTTGAAAGCCTGGACCTaGACACTGAAGACATTGAGG | + |
|
Preference number: 4 (lower is better) Translates to: LRCKTRQQCESIIVHSAELKAWT*TLKTLR Trigger: CCTCAATGTCTTCAGTGTGCAGGTCCAGGCTTTCAA...CTCTGCACTGTGTACAATAATAGATTCACACTGCTGACGTGTCTTGCAGCGTAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS-3UTR CCA 90 bp | CTACGCTGCAAGACACGTCAGCAGTGTGAATCTATTATTGTACACAGTGCAGAGATGAGTTTCCCACAGTaGCCTGAAGAGCTTTCAGTG | + |
|
Preference number: 4 (lower is better) Translates to: LRCKTRQQCESIIVHSAEMSFPQ*PEELSV Trigger: CACTGAAAGCTCTTCAGGCCACTGTGGGAAACTCAT...CTCTGCACTGTGTACAATAATAGATTCACACTGCTGACGTGTCTTGCAGCGTAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS-3UTR GCA 90 bp | GTGCAGAGACAGGGCCACCCTGAACGCCAACACAAGACTGGAAATCACTTTACACCATTATACACGTTGTaGCATTGTTTTTCACCTCAA | + |
|
Preference number: 4 (lower is better) Translates to: VQRQGHPERQHKTGNHFTPLYTL*HCFSPQ Trigger: TTGAGGTGAAAAACAATGGCACAACGTGTATAATGG...TGTAAAGTGATTTCCAGTCTTGTGTTGGCGTTCAGGGTGGCCCTGTCTCTGCAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS-3UTR TCA 90 bp | AAGAACCAAACACCAAGTCTTAAAAGTCAAATCAGTGGAGCCTTCTCATCCTCTAGACCCGGATATCACTaGCACACCGGTATGCTTTGT | + |
|
Preference number: 4 (lower is better) Translates to: KNQTPSLKSQISGAFSSSRPGYH*HTGMLC Trigger: ACAAAGCATACCGGTGTGTCAGTGATATCCGGGTCT...AGAGGATGAGAAGGCTCCACTGATTTGACTTTTAAGACTTGGTGTTTGGTTCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS-3UTR TCA 90 bp | AAGAACCAAACACCAAGTCTTAAAAGTCAAATCAGTGGAGCCTTCTCATCCTCTAGTGTTGCACTTGTATaGGTTTCCCACAGTGGCCTG | + |
|
Preference number: 4 (lower is better) Translates to: KNQTPSLKSQISGAFSSSSVALV*VSHSGL Trigger: CAGGCCACTGTGGGAAACTCATACAAGTGCAACACT...AGAGGATGAGAAGGCTCCACTGATTTGACTTTTAAGACTTGGTGTTTGGTTCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS GCA 90 bp | CTTCCTGCCAATGAGGTAGGCAATGAGGACGATGAGGACCAGCCCTaGCAGGGCACCGCCCACAGCAATGGGGATCAACATGTTGTTACC | + |
|
Preference number: 5 (lower is better) Translates to: LPANEVGNEDDEDQP*QGTAHSNGDQHVVT Trigger: GGTAACAACATGTTGATCCCCATTGCTGTGGGCGGTGCCCTGGCAGGGCTGGTCCTCATCGTCCTCATTGCCTACCTCATTGGCAGGAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS-3UTR CAA 90 bp | GTGCAGAGACAGGGCCACCCTGAACGCCAACACAAGACTGGAAATCACTTTACATGGGTGGCCCAGTGGTaGGGGAAGGTCCATCCTGTG | + |
|
Preference number: 5 (lower is better) Translates to: VQRQGHPERQHKTGNHFTWVAQW*GKVHPV Trigger: CACAGGATGGACCTTCCCCAACCACTGGGCCACCCA...TGTAAAGTGATTTCCAGTCTTGTGTTGGCGTTCAGGGTGGCCCTGTCTCTGCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS-3UTR CAA 90 bp | GCCAAGTGTCCAGAGGTTGACCCTGTGCGTGCCTGTGTGGCAAGCCTTCCCTGCTTGAGGGAGAGCATCTaGCTGACAAAGATGTGTTCC | + |
|
Preference number: 5 (lower is better) Translates to: AKCPEVDPVRACVASLPCLRESI*LTKMCS Trigger: GGAACACATCTTTGTCAGCAAGATGCTCTCCCTCAA...GCAGGGAAGGCTTGCCACACAGGCACGCACAGGGTCAACCTCTGGACACTTGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS-3UTR CAA 90 bp | GAGGTTGACCCTGTGCGTGCCTGTGTGGCAAGCCTTCCCTGCTCCCGTTTGCTTCACCGGTATGCTTTGTaGATGTCTGCCTTGATGTCA | + |
|
Preference number: 5 (lower is better) Translates to: EVDPVRACVASLPCSRLLHRYAL*MSALMS Trigger: TGACATCAAGGCAGACATCAACAAAGCATACCGGTG...AAGCAAACGGGAGCAGGGAAGGCTTGCCACACAGGCACGCACAGGGTCAACCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS GCA 90 bp | TCCACAGACCCAAACCTGTCACTGTCCACCTTGAAAGCCTGGACCTaGACACTGAAGACATTGAGGGAGAGCATCTTGCTGACAAAGATG | + |
|
Preference number: 5 (lower is better) Translates to: STDPNLSLSTLKAWT*TLKTLRESILLTKM Trigger: CATCTTTGTCAGCAAGATGCTCTCCCTCAATGTCTTCAGTGTGCAGGTCCAGGCTTTCAAGGTGGACAGTGACAGGTTTGGGTCTGTGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS TCA 90 bp | TTCCCACAGTGGCCTGAAGAGCTTTCAGTGAATGGTTGGAGATGCTaGATGTGGGCACTAGGGCATCAGGAAGAGTCATATTCAAGCGCA | + |
|
Preference number: 5 (lower is better) Translates to: FPQWPEELSVNGWRC*MWALGHQEESYSSA Trigger: TGCGCTTGAATATGACTCTTCCTGATGCCCTAGTGCCCACATTCAGCATCTCCAACCATTCACTGAAAGCTCTTCAGGCCACTGTGGGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS GCA 90 bp | AGGTGGTCAGAAAGGAGGCAGAGAAGCTGGCCATTATACACGTTGTaGCATTGTTTTTCACCTCAAAGAGTGCTGAGGCGCCATGTGCAA | + |
|
Preference number: 5 (lower is better) Translates to: RWSERRQRSWPLYTL*HCFSPQRVLRRHVQ Trigger: TTGCACATGGCGCCTCAGCACTCTTTGAGGTGAAAAACAATGGCACAACGTGTATAATGGCCAGCTTCTCTGCCTCCTTTCTGACCACCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS-3UTR CAA 90 bp | GTGCAGAGACAGGGCCACCCTGAACGCCAACACAAGACTGGAAATCACTTTACAATGTGTTCCTCAGTGTaGCACTTGTATGAGTTTCCC | + |
|
Preference number: 5 (lower is better) Translates to: VQRQGHPERQHKTGNHFTMCSSV*HLYEFP Trigger: GGGAAACTCATACAAGTGCAACACTGAGGAACACAT...TGTAAAGTGATTTCCAGTCTTGTGTTGGCGTTCAGGGTGGCCCTGTCTCTGCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS TCA 90 bp | ATGTGTTCCTCAGTGTTGCACTTGTATGAGTTTCCCACAGTGGCCTaGAGAGCTTTCAGTGAATGGTTGGAGATGCTGAATGTGGGCACT | + |
|
Preference number: 5 (lower is better) Translates to: MCSSVLHLYEFPTVA*RAFSEWLEMLNVGT Trigger: AGTGCCCACATTCAGCATCTCCAACCATTCACTGAAAGCTCTTCAGGCCACTGTGGGAAACTCATACAAGTGCAACACTGAGGAACACAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS GCA 90 bp | CACCGTCTTGTTGTCCTTTTTCAGGTAGGTGATATTCAGTTGCAGTaGCATAGAGGCCAGCAGGCAGGTTCCGTTGTTACCAGTAACATT | + |
|
Preference number: 5 (lower is better) Translates to: HRLVVLFQVGDIQLQ*HRGQQAGSVVTSNI Trigger: AATGTTACTGGTAACAACGGAACCTGCCTGCTGGCCTCTATGGCACTGCAACTGAATATCACCTACCTGAAAAAGGACAACAAGACGGTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS CCA 90 bp | AACCATTCGCAGTCTCGTAGGTGGTCAGAAAGGAGGCAGAGAAGCTaGCCATTATACACGTTGTGCCATTGTTTTTCACCTCAAAGAGTG | + |
|
Preference number: 5 (lower is better) Translates to: NHSQSRRWSERRQRS*PLYTLCHCFSPQRV Trigger: CACTCTTTGAGGTGAAAAACAATGGCACAACGTGTATAATGGCCAGCTTCTCTGCCTCCTTTCTGACCACCTACGAGACTGCGAATGGTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS-3UTR CAA 90 bp | CTACGCTGCAAGACACGTCAGCAGTGTGAATCTATTATTGTACACAGTGCAGAGGTAGGTGATATTCAGTaGCAGTGCCATAGAGGCCAG | + |
|
Preference number: 5 (lower is better) Translates to: LRCKTRQQCESIIVHSAEVGDIQ*QCHRGQ Trigger: CTGGCCTCTATGGCACTGCAACTGAATATCACCTAC...CTCTGCACTGTGTACAATAATAGATTCACACTGCTGACGTGTCTTGCAGCGTAG 48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS GCA 90 bp | GTAGACCCGGATATCACTGACACACCGGTATGCTTTGTTGATGTCTaGCTTGATGTCAGTTGTGGAATCCATGGTGTAGATCTCTTTGCT | + |
|
Preference number: 5 (lower is better) Translates to: VDPDITDTPVCFVDV*LDVSCGIHGVDLFA Trigger: AGCAAAGAGATCTACACCATGGATTCCACAACTGACATCAAGGCAGACATCAACAAAGCATACCGGTGTGTCAGTGATATCCGGGTCTAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS GCA 90 bp | GGTCACATTCTTCATGTAGACCCGGATATCACTGACACACCGGTATaGTTTGTTGATGTCTGCCTTGATGTCAGTTGTGGAATCCATGGT | + |
|
Preference number: 5 (lower is better) Translates to: GHILHVDPDITDTPV*FVDVCLDVSCGIHG Trigger: ACCATGGATTCCACAACTGACATCAAGGCAGACATCAACAAAGCATACCGGTGTGTCAGTGATATCCGGGTCTACATGAAGAATGTGACC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS-3UTR CAA 90 bp | CTACGCTGCAAGACACGTCAGCAGTGTGAATCTATTATTGTACACAGTGCAGAGCCAGTAACATTGTACTaGGATACAGTGGGGTTTGTG | + |
|
Preference number: 5 (lower is better) Translates to: LRCKTRQQCESIIVHSAEPVTLY*DTVGFV Trigger: CACAAACCCCACTGTATCCAAGTACAATGTTACTGG...CTCTGCACTGTGTACAATAATAGATTCACACTGCTGACGTGTCTTGCAGCGTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS-3UTR CAA 90 bp | AAGAACCAAACACCAAGTCTTAAAAGTCAAATCAGTGGAGCCTTCTCATCCTCTTCATTTGGGCTGATGTaGAACGCTCTGGTCACCGTC | + |
|
Preference number: 5 (lower is better) Translates to: KNQTPSLKSQISGAFSSSSFGLM*NALVTV Trigger: GACGGTGACCAGAGCGTTCAACATCAGCCCAAATGA...AGAGGATGAGAAGGCTCCACTGATTTGACTTTTAAGACTTGGTGTTTGGTTCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS-3UTR CAA 90 bp | AAGAACCAAACACCAAGTCTTAAAAGTCAAATCAGTGGAGCCTTCTCATCCTCTTCCAGGGCTCTGTTCTaGTTCTCCACTTTCAGGGTC | + |
|
Preference number: 5 (lower is better) Translates to: KNQTPSLKSQISGAFSSSSRALF*FSTFRV Trigger: GACCCTGAAAGTGGAGAACAAGAACAGAGCCCTGGA...AGAGGATGAGAAGGCTCCACTGATTTGACTTTTAAGACTTGGTGTTTGGTTCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS GCA 90 bp | AGAAACATTTTCTTTACCACAAGAACTGCCATTTTTCAGTACTTCTaGAGAGGCTGGCAGGGAAATGTTCACGATCTGAGAACCATTCGC | + |
|
Preference number: 5 (lower is better) Translates to: RNIFFTTRTAIFQYF*RGWQGNVHDLRTIR Trigger: GCGAATGGTTCTCAGATCGTGAACATTTCCCTGCCAGCCTCTGCAGAAGTACTGAAAAATGGCAGTTCTTGTGGTAAAGAAAATGTTTCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS-3UTR CAA 90 bp | AAGAACCAAACACCAAGTCTTAAAAGTCAAATCAGTGGAGCCTTCTCATCCTCTATTCAAGCGCACTCCTaGCAGGAAAAACAGGCTAGA | + |
|
Preference number: 5 (lower is better) Translates to: KNQTPSLKSQISGAFSSSIQAHS*QEKQAR Trigger: TCTAGCCTGTTTTTCCTGCAAGGAGTGCGCTTGAAT...AGAGGATGAGAAGGCTCCACTGATTTGACTTTTAAGACTTGGTGTTTGGTTCTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS GCA 72 bp | AATGAGGTAGGCAATGAGGACGATGAGGACCAGCCCTaGCAGGGCACCGCCCACAGCAATGGGGATCAACAT | + |
|
Preference number: 6 (lower is better) Translates to: NEVGNEDDEDQP*QGTAHSNGDQH Trigger: ATGTTGATCCCCATTGCTGTGGGCGGTGCCCTGGCAGGGCTGGTCCTCATCGTCCTCATTGCCTACCTCATT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS TCA 72 bp | ACACGTTGTGCCATTGTTTTTCACCTCAAAGAGTGCTaGGGCGCCATGTGCAAGGCCTGCCAGCAGCAGCAG | + |
|
Preference number: 6 (lower is better) Translates to: TRCAIVFHLKEC*GAMCKACQQQQ Trigger: CTGCTGCTGCTGGCAGGCCTTGCACATGGCGCCTCAGCACTCTTTGAGGTGAAAAACAATGGCACAACGTGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS CAA 90 bp | ATAGAGGCCAGCAGGCAGGTTCCGTTGTTACCAGTAACATTGTACTaGGATACAGTGGGGTTTGTGGGCACAAGTGGTGGTGAGGGGCTG | + |
|
Preference number: 6 (lower is better) Translates to: IEASRQVPLLPVTLY*DTVGFVGTSGGEGL Trigger: CAGCCCCTCACCACCACTTGTGCCCACAAACCCCACTGTATCCAAGTACAATGTTACTGGTAACAACGGAACCTGCCTGCTGGCCTCTAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS CAA 90 bp | AGTGCCATAGAGGCCAGCAGGCAGGTTCCGTTGTTACCAGTAACATaGTACTTGGATACAGTGGGGTTTGTGGGCACAAGTGGTGGTGAG | + |
|
Preference number: 6 (lower is better) Translates to: SAIEASRQVPLLPVT*YLDTVGFVGTSGGE Trigger: CTCACCACCACTTGTGCCCACAAACCCCACTGTATCCAAGTACAATGTTACTGGTAACAACGGAACCTGCCTGCTGGCCTCTATGGCACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS CAA 90 bp | GTCAGAAAGGAGGCAGAGAAGCTGGCCATTATACACGTTGTGCCATaGTTTTTCACCTCAAAGAGTGCTGAGGCGCCATGTGCAAGGCCT | + |
|
Preference number: 6 (lower is better) Translates to: VRKEAEKLAIIHVVP*FFTSKSAEAPCARP Trigger: AGGCCTTGCACATGGCGCCTCAGCACTCTTTGAGGTGAAAAACAATGGCACAACGTGTATAATGGCCAGCTTCTCTGCCTCCTTTCTGAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS CAA 90 bp | CGTAGGTGGTCAGAAAGGAGGCAGAGAAGCTGGCCATTATACACGTaGTGCCATTGTTTTTCACCTCAAAGAGTGCTGAGGCGCCATGTG | + |
|
Preference number: 6 (lower is better) Translates to: RRWSERRQRSWPLYT*CHCFSPQRVLRRHV Trigger: CACATGGCGCCTCAGCACTCTTTGAGGTGAAAAACAATGGCACAACGTGTATAATGGCCAGCTTCTCTGCCTCCTTTCTGACCACCTACG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS CAA 72 bp | GAGGCCAGCAGGCAGGTTCCGTTGTTACCAGTAACATaGTACTTGGATACAGTGGGGTTTGTGGGCACAAGT | + |
|
Preference number: 6 (lower is better) Translates to: EASRQVPLLPVT*YLDTVGFVGTS Trigger: ACTTGTGCCCACAAACCCCACTGTATCCAAGTACAATGTTACTGGTAACAACGGAACCTGCCTGCTGGCCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS CAA 72 bp | AGTTGCAGTGCCATAGAGGCCAGCAGGCAGGTTCCGTaGTTACCAGTAACATTGTACTTGGATACAGTGGGG | + |
|
Preference number: 6 (lower is better) Translates to: SCSAIEASRQVP*LPVTLYLDTVG Trigger: CCCCACTGTATCCAAGTACAATGTTACTGGTAACAACGGAACCTGCCTGCTGGCCTCTATGGCACTGCAACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS CAA 90 bp | GTGATATTCAGTTGCAGTGCCATAGAGGCCAGCAGGCAGGTTCCGTaGTTACCAGTAACATTGTACTTGGATACAGTGGGGTTTGTGGGC | + |
|
Preference number: 6 (lower is better) Translates to: VIFSCSAIEASRQVP*LPVTLYLDTVGFVG Trigger: GCCCACAAACCCCACTGTATCCAAGTACAATGTTACTGGTAACAACGGAACCTGCCTGCTGGCCTCTATGGCACTGCAACTGAATATCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS TCA 72 bp | CCCACAGCAATGGGGATCAACATGTTGTTACCATCCTaGACACACTCTTCCACAGACCCAAACCTGTCACTG | + |
|
Preference number: 6 (lower is better) Translates to: PTAMGINMLLPS*THSSTDPNLSL Trigger: CAGTGACAGGTTTGGGTCTGTGGAAGAGTGTGTTCAGGATGGTAACAACATGTTGATCCCCATTGCTGTGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS GCA 72 bp | GTTGTCCTTTTTCAGGTAGGTGATATTCAGTTGCAGTaGCATAGAGGCCAGCAGGCAGGTTCCGTTGTTACC | + |
|
Preference number: 6 (lower is better) Translates to: VVLFQVGDIQLQ*HRGQQAGSVVT Trigger: GGTAACAACGGAACCTGCCTGCTGGCCTCTATGGCACTGCAACTGAATATCACCTACCTGAAAAAGGACAAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS CAA 72 bp | GAGGCAGAGAAGCTGGCCATTATACACGTTGTGCCATaGTTTTTCACCTCAAAGAGTGCTGAGGCGCCATGT | + |
|
Preference number: 6 (lower is better) Translates to: EAEKLAIIHVVP*FFTSKSAEAPC Trigger: ACATGGCGCCTCAGCACTCTTTGAGGTGAAAAACAATGGCACAACGTGTATAATGGCCAGCTTCTCTGCCTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS CAA 72 bp | AGCAGGCAGGTTCCGTTGTTACCAGTAACATTGTACTaGGATACAGTGGGGTTTGTGGGCACAAGTGGTGGT | + |
|
Preference number: 6 (lower is better) Translates to: SRQVPLLPVTLY*DTVGFVGTSGG Trigger: ACCACCACTTGTGCCCACAAACCCCACTGTATCCAAGTACAATGTTACTGGTAACAACGGAACCTGCCTGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS CAA 72 bp | CCGCAACTCCCACTAGATGTGTCATTTGGGCTGATGTaGAACGCTCTGGTCACCGTCTTGTTGTCCTTTTTC | + |
|
Preference number: 6 (lower is better) Translates to: PQLPLDVSFGLM*NALVTVLLSFF Trigger: GAAAAAGGACAACAAGACGGTGACCAGAGCGTTCAACATCAGCCCAAATGACACATCTAGTGGGAGTTGCGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS CCA 72 bp | CAGTCTCGTAGGTGGTCAGAAAGGAGGCAGAGAAGCTaGCCATTATACACGTTGTGCCATTGTTTTTCACCT | + |
|
Preference number: 6 (lower is better) Translates to: QSRRWSERRQRS*PLYTLCHCFSP Trigger: AGGTGAAAAACAATGGCACAACGTGTATAATGGCCAGCTTCTCTGCCTCCTTTCTGACCACCTACGAGACTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS CCA 72 bp | GTTCCTCAGTGTTGCACTTGTATGAGTTTCCCACAGTaGCCTGAAGAGCTTTCAGTGAATGGTTGGAGATGC | + |
|
Preference number: 6 (lower is better) Translates to: VPQCCTCMSFPQ*PEELSVNGWRC Trigger: GCATCTCCAACCATTCACTGAAAGCTCTTCAGGCCACTGTGGGAAACTCATACAAGTGCAACACTGAGGAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS CAA 72 bp | GCATTCATCCCAAACTGCAATTCCAGGGCTCTGTTCTaGTTCTCCACTTTCAGGGTCACCAAGTTGATACCG | + |
|
Preference number: 6 (lower is better) Translates to: AFIPNCNSRALF*FSTFRVTKLIP Trigger: CGGTATCAACTTGGTGACCCTGAAAGTGGAGAACAAGAACAGAGCCCTGGAATTGCAGTTTGGGATGAATGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS GCA 72 bp | CTTCATGTAGACCCGGATATCACTGACACACCGGTATaGTTTGTTGATGTCTGCCTTGATGTCAGTTGTGGA | + |
|
Preference number: 6 (lower is better) Translates to: LHVDPDITDTPV*FVDVCLDVSCG Trigger: TCCACAACTGACATCAAGGCAGACATCAACAAAGCATACCGGTGTGTCAGTGATATCCGGGTCTACATGAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS CAA 72 bp | TCAGAAAGGAGGCAGAGAAGCTGGCCATTATACACGTaGTGCCATTGTTTTTCACCTCAAAGAGTGCTGAGG | + |
|
Preference number: 6 (lower is better) Translates to: SERRQRSWPLYT*CHCFSPQRVLR Trigger: CCTCAGCACTCTTTGAGGTGAAAAACAATGGCACAACGTGTATAATGGCCAGCTTCTCTGCCTCCTTTCTGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS CAA 90 bp | TTGAAAGCCTGGACCTGCACACTGAAGACATTGAGGGAGAGCATCTaGCTGACAAAGATGTGTTCCTCAGTGTTGCACTTGTATGAGTTT | + |
|
Preference number: 6 (lower is better) Translates to: LKAWTCTLKTLRESI*LTKMCSSVLHLYEF Trigger: AAACTCATACAAGTGCAACACTGAGGAACACATCTTTGTCAGCAAGATGCTCTCCCTCAATGTCTTCAGTGTGCAGGTCCAGGCTTTCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS TCA 72 bp | TCAGTGTTGCACTTGTATGAGTTTCCCACAGTGGCCTaGAGAGCTTTCAGTGAATGGTTGGAGATGCTGAAT | + |
|
Preference number: 6 (lower is better) Translates to: SVLHLYEFPTVA*RAFSEWLEMLN Trigger: ATTCAGCATCTCCAACCATTCACTGAAAGCTCTTCAGGCCACTGTGGGAAACTCATACAAGTGCAACACTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS GCA 72 bp | TTCTTTACCACAAGAACTGCCATTTTTCAGTACTTCTaGAGAGGCTGGCAGGGAAATGTTCACGATCTGAGA | + |
|
Preference number: 6 (lower is better) Translates to: FFTTRTAIFQYF*RGWQGNVHDLR Trigger: TCTCAGATCGTGAACATTTCCCTGCCAGCCTCTGCAGAAGTACTGAAAAATGGCAGTTCTTGTGGTAAAGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||
| CDS TCA 72 bp | TGTCAGTTGTGGAATCCATGGTGTAGATCTCTTTGCTaGTGGCATTGGGAAAATGTTCTGTATCTGACAAGT | + |
|
Preference number: 6 (lower is better) Translates to: CQLWNPWCRSLC*WHWENVLYLTS Trigger: ACTTGTCAGATACAGAACATTTTCCCAATGCCATCAGCAAAGAGATCTACACCATGGATTCCACAACTGACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033824.8 |
||