RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LAMC3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026840

Ensembl transcript IDs: ENSMUST00000028187.7, ENSMUST00000138325.8

Found 372 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GATCCCTCTGGGGAATCGTCCACAAAAGATACCTCCATCTTACCTTaGCCTGTGGCTTTGCAGGCCCACGTGGCCTCAGGTGACACTTCC +
Preference number: 1 (lower is better)
Translates to: DPSGESSTKDTSILP*PVALQAHVASGDTS
Trigger: GGAAGTGTCACCTGAGGCCACGTGGGCCTGCAAAGCCACAGGGCAAGGTAAGATGGAGGTATCTTTTGTGGACGATTCCCCAGAGGGATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
3UTR TCA 90 bp GCCAGGGATTTCTGGGGGAGGCAGTCATGGGTAGCAGGCTTAGAATaGCAGCCAGGCTCCCACATCCCTGTGACATACTTCATGACAGGT +
Preference number: 1 (lower is better)
Translates to: ARDFWGRQSWVAGLE*QPGSHIPVTYFMTG
Trigger: ACCTGTCATGAAGTATGTCACAGGGATGTGGGAGCCTGGCTGTCATTCTAAGCCTGCTACCCATGACTGCCTCCCCCAGAAATCCCTGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
3UTR GCA 90 bp TGGCCTCAGGTGACACTTCCAGGAACCCTGTTAGAATCTGGGCACTaGTTGATCTGTCTGGTACCTCAGTTCTCAGAGCTGCTGGGTGAC +
Preference number: 1 (lower is better)
Translates to: WPQVTLPGTLLESGH*LICLVPQFSELLGD
Trigger: GTCACCCAGCAGCTCTGAGAACTGAGGTACCAGACAGATCAAGCAGTGCCCAGATTCTAACAGGGTTCCTGGAAGTGTCACCTGAGGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
3UTR TCA 90 bp GAGCCAGACCCTGAAGAAGCTGGTTCTTCAGGTAGGTCAGGACATTaGAGGTGGATGGATCAGGCACTTCCCTCAATGAAACAGCTGGTC +
Preference number: 1 (lower is better)
Translates to: EPDPEEAGSSGRSGH*RWMDQALPSMKQLV
Trigger: GACCAGCTGTTTCATTGAGGGAAGTGCCTGATCCATCCACCTTCAATGTCCTGACCTACCTGAAGAACCAGCTTCTTCAGGGTCTGGCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
3UTR CCA 90 bp AGGGTCCTTTATTTCCTCAGAATCACAATCAGTTCCTCTGGGACCTaGGGAAGGGATTGGGCTTGCAAAGGTGGCTGTTATCCCAGTGCC +
Preference number: 1 (lower is better)
Translates to: RVLYFLRITISSSGT*GRDWACKGGCYPSA
Trigger: GGCACTGGGATAACAGCCACCTTTGCAAGCCCAATCCCTTCCCCAGGTCCCAGAGGAACTGATTGTGATTCTGAGGAAATAAAGGACCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
3UTR GCA 90 bp GGGATTGGGCTTGCAAAGGTGGCTGTTATCCCAGTGCCTAGGCTCTaGTGTGTTCTAAAGAGCTCTGAGAAAAAGAGGGGGTATCAGGAA +
Preference number: 1 (lower is better)
Translates to: GIGLAKVAVIPVPRL*CVLKSSEKKRGYQE
Trigger: TTCCTGATACCCCCTCTTTTTCTCAGAGCTCTTTAGAACACAGCAGAGCCTAGGCACTGGGATAACAGCCACCTTTGCAAGCCCAATCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
3UTR GCA 90 bp CCAAGCTCAGGACTGCCTCTCCACAGCTCTAGACTCTCATATGTGTaGATGCACACAGGTGGTCTTAACACATCAGTGCATCACATACAC +
Preference number: 1 (lower is better)
Translates to: PSSGLPLHSSRLSYV*MHTGGLNTSVHHIH
Trigger: GTGTATGTGATGCACTGATGTGTTAAGACCACCTGTGTGCATGCACACATATGAGAGTCTAGAGCTGTGGAGAGGCAGTCCTGAGCTTGG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
3UTR GCA 90 bp CTGCAGGGAATATTTCATAACAGGACCCACCCAGAATGTGGAATGTaGCCAAGCTCAGGACTGCCTCTCCACAGCTCTAGACTCTCATAT +
Preference number: 1 (lower is better)
Translates to: LQGIFHNRTHPECGM*PSSGLPLHSSRLSY
Trigger: ATATGAGAGTCTAGAGCTGTGGAGAGGCAGTCCTGAGCTTGGGCACATTCCACATTCTGGGTGGGTCCTGTTATGAAATATTCCCTGCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
3UTR CCA 90 bp CAGGAAAAGGGTCCTTTATTTCCTCAGAATCACAATCAGTTCCTCTaGGACCTGGGGAAGGGATTGGGCTTGCAAAGGTGGCTGTTATCC +
Preference number: 1 (lower is better)
Translates to: QEKGPLFPQNHNQFL*DLGKGLGLQRWLLS
Trigger: GGATAACAGCCACCTTTGCAAGCCCAATCCCTTCCCCAGGTCCCAGAGGAACTGATTGTGATTCTGAGGAAATAAAGGACCCTTTTCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
3UTR-3UTR TCA 90 bp GCCAGGCTCCCACATCCCTGTGACATACTTCATGACAGGTGGGGCCACAAGACCCTCAGAGCTGCTGGGTaGCCAGTTAGGGGACAGAGG +
Preference number: 2 (lower is better)
Translates to: ARLPHPCDILHDRWGHKTLRAAG*PVRGQR
Trigger: CCTCTGTCCCCTAACTGGTCACCCAGCAGCTCTGAG...GGTCTTGTGGCCCCACCTGTCATGAAGTATGTCACAGGGATGTGGGAGCCTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
3UTR CAA 90 bp CCTCAGGTGACACTTCCAGGAACCCTGTTAGAATCTGGGCACTGCTaGATCTGTCTGGTACCTCAGTTCTCAGAGCTGCTGGGTGACCAG +
Preference number: 2 (lower is better)
Translates to: PQVTLPGTLLESGHC*ICLVPQFSELLGDQ
Trigger: CTGGTCACCCAGCAGCTCTGAGAACTGAGGTACCAGACAGATCAAGCAGTGCCCAGATTCTAACAGGGTTCCTGGAAGTGTCACCTGAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
3UTR CAA 90 bp CAGAATCACAATCAGTTCCTCTGGGACCTGGGGAAGGGATTGGGCTaGCAAAGGTGGCTGTTATCCCAGTGCCTAGGCTCTGCTGTGTTC +
Preference number: 2 (lower is better)
Translates to: QNHNQFLWDLGKGLG*QRWLLSQCLGSAVF
Trigger: GAACACAGCAGAGCCTAGGCACTGGGATAACAGCCACCTTTGCAAGCCCAATCCCTTCCCCAGGTCCCAGAGGAACTGATTGTGATTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
3UTR-3UTR CCA 90 bp CATAGTGGGTCCAGGGCCAGCTCTGTGACCATGCACATGGGACTTTCTGAGGCTTTGGCCCCTGATTTCTaGAGGGAGGGTTGTAGATGT +
Preference number: 2 (lower is better)
Translates to: HSGSRASSVTMHMGLSEALAPDF*REGCRC
Trigger: ACATCTACAACCCTCCCTCCAGAAATCAGGGGCCAA...AGCCTCAGAAAGTCCCATGTGCATGGTCACAGAGCTGGCCCTGGACCCACTATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
3UTR CAA 90 bp TTTCCTCAGAATCACAATCAGTTCCTCTGGGACCTGGGGAAGGGATaGGGCTTGCAAAGGTGGCTGTTATCCCAGTGCCTAGGCTCTGCT +
Preference number: 2 (lower is better)
Translates to: FPQNHNQFLWDLGKG*GLQRWLLSQCLGSA
Trigger: AGCAGAGCCTAGGCACTGGGATAACAGCCACCTTTGCAAGCCCAATCCCTTCCCCAGGTCCCAGAGGAACTGATTGTGATTCTGAGGAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
3UTR-3UTR TCA 90 bp CATAGTGGGTCCAGGGCCAGCTCTGTGACCATGCACATGGGACTTTCTGAGGCTAAACAAGCATTCACGTaGACATACGACAGGCAGACC +
Preference number: 2 (lower is better)
Translates to: HSGSRASSVTMHMGLSEAKQAFT*TYDRQT
Trigger: GGTCTGCCTGTCGTATGTTCACGTGAATGCTTGTTT...AGCCTCAGAAAGTCCCATGTGCATGGTCACAGAGCTGGCCCTGGACCCACTATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
3UTR-3UTR GCA 90 bp CCATCTTACCTTGCCCTGTGGCTTTGCAGGCCCACGTGGCCTCAGGTGACACTTTCTCATATGTGTGCATaGACACAGGTGGTCTTAACA +
Preference number: 2 (lower is better)
Translates to: PSYLALWLCRPTWPQVTLSHMCA*TQVVLT
Trigger: TGTTAAGACCACCTGTGTGCATGCACACATATGAGA...AAGTGTCACCTGAGGCCACGTGGGCCTGCAAAGCCACAGGGCAAGGTAAGATGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
3UTR-3UTR CCA 90 bp GGCTCCCACATCCCTGTGACATACTTCATGACAGGTGGGGCCACAAGACCAGTCATACAGGGTCATCTGTaGAGGTGTGAGCATGTATTC +
Preference number: 2 (lower is better)
Translates to: GSHIPVTYFMTGGATRPVIQGHL*RCEHVF
Trigger: GAATACATGCTCACACCTCCACAGATGACCCTGTAT...GACTGGTCTTGTGGCCCCACCTGTCATGAAGTATGTCACAGGGATGTGGGAGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
3UTR-3UTR CCA 90 bp CCATCTTACCTTGCCCTGTGGCTTTGCAGGCCCACGTGGCCTCAGGTGACACTTCATATGTGCAAATACTaGGGTGTGTATGCTGATGCA +
Preference number: 2 (lower is better)
Translates to: PSYLALWLCRPTWPQVTLHMCKY*GVYADA
Trigger: TGCATCAGCATACACACCCCAGTATTTGCACATATG...AAGTGTCACCTGAGGCCACGTGGGCCTGCAAAGCCACAGGGCAAGGTAAGATGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
3UTR-3UTR TCA 90 bp TGGCCTCAGGTGACACTTCCAGGAACCCTGTTAGAATCTGGGCACTGCTTGATCGCACATGGGACTTTCTaGGGCTTCTCAAAATCTCTG +
Preference number: 2 (lower is better)
Translates to: WPQVTLPGTLLESGHCLIAHGTF*GFSKSL
Trigger: CAGAGATTTTGAGAAGCCTCAGAAAGTCCCATGTGC...GATCAAGCAGTGCCCAGATTCTAACAGGGTTCCTGGAAGTGTCACCTGAGGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
3UTR-3UTR TCA 90 bp GGGTCCTTTATTTCCTCAGAATCACAATCAGTTCCTCTGGGACCTGGGGAAGGGAATCTGGGCACTGCTTaGTCTGTCTGGTACCTCAGT +
Preference number: 2 (lower is better)
Translates to: GSFISSESQSVPLGPGEGNLGTA*SVWYLS
Trigger: ACTGAGGTACCAGACAGATCAAGCAGTGCCCAGATT...CCCTTCCCCAGGTCCCAGAGGAACTGATTGTGATTCTGAGGAAATAAAGGACCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
3UTR-3UTR TCA 90 bp GGGTCCTTTATTTCCTCAGAATCACAATCAGTTCCTCTGGGACCTGGGGAAGGGGCCACAAGACCAGTCTaGGAAGTGTCAATCAAAGGC +
Preference number: 2 (lower is better)
Translates to: GSFISSESQSVPLGPGEGATRPV*EVSIKG
Trigger: GCCTTTGATTGACACTTCTCAGACTGGTCTTGTGGC...CCCTTCCCCAGGTCCCAGAGGAACTGATTGTGATTCTGAGGAAATAAAGGACCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
3UTR-3UTR CCA 90 bp CAGGAAAAGGGTCCTTTATTTCCTCAGAATCACAATCAGTTCCTCTGGGACCTGGACACCTACAGGGAGTaGACAGGAAACGGCAGGGTG +
Preference number: 2 (lower is better)
Translates to: QEKGPLFPQNHNQFLWDLDTYRE*TGNGRV
Trigger: CACCCTGCCGTTTCCTGTCCACTCCCTGTAGGTGTC...CAGGTCCCAGAGGAACTGATTGTGATTCTGAGGAAATAAAGGACCCTTTTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
3UTR-3UTR GCA 90 bp CAGGAAAAGGGTCCTTTATTTCCTCAGAATCACAATCAGTTCCTCTGGGACCTGACCTCCATCTTACCTTaGCCTGTGGCTTTGCAGGCC +
Preference number: 2 (lower is better)
Translates to: QEKGPLFPQNHNQFLWDLTSILP*PVALQA
Trigger: GGCCTGCAAAGCCACAGGGCAAGGTAAGATGGAGGT...CAGGTCCCAGAGGAACTGATTGTGATTCTGAGGAAATAAAGGACCCTTTTCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
3UTR-3UTR TCA 90 bp TGTGTTCTAAAGAGCTCTGAGAAAAAGAGGGGGTATCAGGAAGAAATGCCAGGGGGTAGGTCAGGACATTaGAGGTGGATGGATCAGGCA +
Preference number: 2 (lower is better)
Translates to: CVLKSSEKKRGYQEEMPGGRSGH*RWMDQA
Trigger: TGCCTGATCCATCCACCTTCAATGTCCTGACCTACC...CCCTGGCATTTCTTCCTGATACCCCCTCTTTTTCTCAGAGCTCTTTAGAACACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
3UTR-3UTR TCA 90 bp CTTTATTTCCTCAGAATCACAATCAGTTCCTCTGGGACCTGGGGAAGGGATTGGTGTTCTAAAGAGCTCTaGGAAAAAGAGGGGGTATCA +
Preference number: 2 (lower is better)
Translates to: LYFLRITISSSGTWGRDWCSKEL*EKEGVS
Trigger: TGATACCCCCTCTTTTTCTCAGAGCTCTTTAGAACA...CCAATCCCTTCCCCAGGTCCCAGAGGAACTGATTGTGATTCTGAGGAAATAAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
3UTR-3UTR GCA 90 bp CCAGTGCCTAGGCTCTGCTGTGTTCTAAAGAGCTCTGAGAAAAAGAGGGGGTATTCACATACACATATGTaGAAATACTGGGGTGTGTAT +
Preference number: 2 (lower is better)
Translates to: PVPRLCCVLKSSEKKRGYSHTHM*KYWGVY
Trigger: ATACACACCCCAGTATTTGCACATATGTGTATGTGA...ATACCCCCTCTTTTTCTCAGAGCTCTTTAGAACACAGCAGAGCCTAGGCACTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
3UTR CCA 72 bp GCCTCGGAGGTACCACCCCTGTTGGCCCCTGATTTCTaGAGGGAGGGTTGTAGATGTGTCATCCCTGCAGGG +
Preference number: 3 (lower is better)
Translates to: ASEVPPLLAPDF*REGCRCVIPAG
Trigger: CCCTGCAGGGATGACACATCTACAACCCTCCCTCCAGAAATCAGGGGCCAACAGGGGTGGTACCTCCGAGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
3UTR GCA 72 bp GGGGAATCGTCCACAAAAGATACCTCCATCTTACCTTaGCCTGTGGCTTTGCAGGCCCACGTGGCCTCAGGT +
Preference number: 3 (lower is better)
Translates to: GESSTKDTSILP*PVALQAHVASG
Trigger: ACCTGAGGCCACGTGGGCCTGCAAAGCCACAGGGCAAGGTAAGATGGAGGTATCTTTTGTGGACGATTCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
3UTR TCA 72 bp GGACAGAGGAGCATAGTGGGTCCAGGGCCAGCTCTGTaGCCATGCACATGGGACTTTCTGAGGCTTCTCAAA +
Preference number: 3 (lower is better)
Translates to: GQRSIVGPGPAL*PCTWDFLRLLK
Trigger: TTTGAGAAGCCTCAGAAAGTCCCATGTGCATGGTCACAGAGCTGGCCCTGGACCCACTATGCTCCTCTGTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
3UTR TCA 72 bp GATCTGTCTGGTACCTCAGTTCTCAGAGCTGCTGGGTaGCCAGTTAGGGGACAGAGGAGCATAGTGGGTCCA +
Preference number: 3 (lower is better)
Translates to: DLSGTSVLRAAG*PVRGQRSIVGP
Trigger: TGGACCCACTATGCTCCTCTGTCCCCTAACTGGTCACCCAGCAGCTCTGAGAACTGAGGTACCAGACAGATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
3UTR GCA 72 bp CCCACCCAGAATGTGGAATGTGCCCAAGCTCAGGACTaGCTCTCCACAGCTCTAGACTCTCATATGTGTGCA +
Preference number: 3 (lower is better)
Translates to: PTQNVECAQAQD*LSTALDSHMCA
Trigger: TGCACACATATGAGAGTCTAGAGCTGTGGAGAGGCAGTCCTGAGCTTGGGCACATTCCACATTCTGGGTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
3UTR TCA 72 bp TCAGACCGAAGATGCACCAGCAAACAAGCATTCACGTaGACATACGACAGGCAGACCTGGGACACCTACAGG +
Preference number: 3 (lower is better)
Translates to: SDRRCTSKQAFT*TYDRQTWDTYR
Trigger: CCTGTAGGTGTCCCAGGTCTGCCTGTCGTATGTTCACGTGAATGCTTGTTTGCTGGTGCATCTTCGGTCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
3UTR CCA 72 bp AGGCTCCCACATCCCTGTGACATACTTCATGACAGGTaGGGCCACAAGACCAGTCTGAGAAGTGTCAATCAA +
Preference number: 3 (lower is better)
Translates to: RLPHPCDILHDR*GHKTSLRSVNQ
Trigger: TTGATTGACACTTCTCAGACTGGTCTTGTGGCCCCACCTGTCATGAAGTATGTCACAGGGATGTGGGAGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
3UTR TCA 72 bp CAGGGCCAGCTCTGTGACCATGCACATGGGACTTTCTaGGGCTTCTCAAAATCTCTGAGGATAGATAGTCTC +
Preference number: 3 (lower is better)
Translates to: QGQLCDHAHGTF*GFSKSLRIDSL
Trigger: GAGACTATCTATCCTCAGAGATTTTGAGAAGCCTCAGAAAGTCCCATGTGCATGGTCACAGAGCTGGCCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
3UTR GCA 72 bp ATATTTCATAACAGGACCCACCCAGAATGTGGAATGTaGCCAAGCTCAGGACTGCCTCTCCACAGCTCTAGA +
Preference number: 3 (lower is better)
Translates to: IFHNRTHPECGM*PSSGLPLHSSR
Trigger: TCTAGAGCTGTGGAGAGGCAGTCCTGAGCTTGGGCACATTCCACATTCTGGGTGGGTCCTGTTATGAAATAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
3UTR CCA 72 bp AGAGTACACACTGAGGACTACATACAGGGTCATCTGTaGAGGTGTGAGCATGTATTCACTCCTGCTCAGACC +
Preference number: 3 (lower is better)
Translates to: RVHTEDYIQGHL*RCEHVFTPAQT
Trigger: GGTCTGAGCAGGAGTGAATACATGCTCACACCTCCACAGATGACCCTGTATGTAGTCCTCAGTGTGTACTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
3UTR TCA 72 bp CCTGAAGAAGCTGGTTCTTCAGGTAGGTCAGGACATTaGAGGTGGATGGATCAGGCACTTCCCTCAATGAAA +
Preference number: 3 (lower is better)
Translates to: PEEAGSSGRSGH*RWMDQALPSMK
Trigger: TTTCATTGAGGGAAGTGCCTGATCCATCCACCTTCAATGTCCTGACCTACCTGAAGAACCAGCTTCTTCAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
3UTR GCA 72 bp TGCCTCTCCACAGCTCTAGACTCTCATATGTGTGCATaGACACAGGTGGTCTTAACACATCAGTGCATCACA +
Preference number: 3 (lower is better)
Translates to: CLSTALDSHMCA*TQVVLTHQCIT
Trigger: TGTGATGCACTGATGTGTTAAGACCACCTGTGTGCATGCACACATATGAGAGTCTAGAGCTGTGGAGAGGCA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
3UTR CCA 72 bp TATTTCCTCAGAATCACAATCAGTTCCTCTGGGACCTaGGGAAGGGATTGGGCTTGCAAAGGTGGCTGTTAT +
Preference number: 3 (lower is better)
Translates to: YFLRITISSSGT*GRDWACKGGCY
Trigger: ATAACAGCCACCTTTGCAAGCCCAATCCCTTCCCCAGGTCCCAGAGGAACTGATTGTGATTCTGAGGAAATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
3UTR TCA 72 bp ACATACACATATGTGCAAATACTGGGGTGTGTATGCTaGTGCACGTTTAGAGAGTACACACTGAGGACTACA +
Preference number: 3 (lower is better)
Translates to: TYTYVQILGCVC*CTFREYTLRTT
Trigger: TGTAGTCCTCAGTGTGTACTCTCTAAACGTGCATCAGCATACACACCCCAGTATTTGCACATATGTGTATGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
3UTR CCA 72 bp CACATCAGTGCATCACATACACATATGTGCAAATACTaGGGTGTGTATGCTGATGCACGTTTAGAGAGTACA +
Preference number: 3 (lower is better)
Translates to: HISASHTHMCKY*GVYADARLEST
Trigger: TGTACTCTCTAAACGTGCATCAGCATACACACCCCAGTATTTGCACATATGTGTATGTGATGCACTGATGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp CAGGCAGACCTGGGACACCTACAGGGAGTGGACAGGAAACGGCAGGGTGGGGAGTCCAGCCTGTCACTGTaGGCTTGCAGGGACAGACGC +
Preference number: 4 (lower is better)
Translates to: QADLGHLQGVDRKRQGGESSLSL*ACRDRR
Trigger: GCGTCTGTCCCTGCAAGCCCACAGTGACAGGCTGGA...CTCCCCACCCTGCCGTTTCCTGTCCACTCCCTGTAGGTGTCCCAGGTCTGCCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp CAGGCAGACCTGGGACACCTACAGGGAGTGGACAGGAAACGGCAGGGTGGGGAGGAGGGCTGGGTAGACTaGAGGGCCTCAGAGACAGAG +
Preference number: 4 (lower is better)
Translates to: QADLGHLQGVDRKRQGGEEGWVD*RASETE
Trigger: CTCTGTCTCTGAGGCCCTCCAGTCTACCCAGCCCTC...CTCCCCACCCTGCCGTTTCCTGTCCACTCCCTGTAGGTGTCCCAGGTCTGCCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp ACAGGCAGACCTGGGACACCTACAGGGAGTGGACAGGAAACGGCAGGGTGGGGAAGCAGGCGCTGGAAGTaGAAGGTGGGCAGTGGGGAC +
Preference number: 4 (lower is better)
Translates to: TGRPGTPTGSGQETAGWGSRRWK*KVGSGD
Trigger: GTCCCCACTGCCCACCTTCCACTTCCAGCGCCTGCT...TCCCCACCCTGCCGTTTCCTGTCCACTCCCTGTAGGTGTCCCAGGTCTGCCTGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp CAGGCAGACCTGGGACACCTACAGGGAGTGGACAGGAAACGGCAGGGTGGGGAGTCCTCCAGTTCCTGCTaGGCTTCCGAGGCCACTCTG +
Preference number: 4 (lower is better)
Translates to: QADLGHLQGVDRKRQGGESSSSC*ASEATL
Trigger: CAGAGTGGCCTCGGAAGCCCAGCAGGAACTGGAGGA...CTCCCCACCCTGCCGTTTCCTGTCCACTCCCTGTAGGTGTCCCAGGTCTGCCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR GCA 90 bp CATACGACAGGCAGACCTGGGACACCTACAGGGAGTGGACAGGAAACGGCAGGGCACAGGTGCCCAAGCTaGCGGCGACATTGCAGGCAC +
Preference number: 4 (lower is better)
Translates to: HTTGRPGTPTGSGQETAGHRCPS*RRHCRH
Trigger: GTGCCTGCAATGTCGCCGGCAGCTTGGGCACCTGTG...CCCTGCCGTTTCCTGTCCACTCCCTGTAGGTGTCCCAGGTCTGCCTGTCGTATG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp ACAGGCAGACCTGGGACACCTACAGGGAGTGGACAGGAAACGGCAGGGTGGGGATGGTGTCCTGAGGGCTaGGTAGACTGGAGGGCCTCA +
Preference number: 4 (lower is better)
Translates to: TGRPGTPTGSGQETAGWGWCPEG*VDWRAS
Trigger: TGAGGCCCTCCAGTCTACCCAGCCCTCAGGACACCA...TCCCCACCCTGCCGTTTCCTGTCCACTCCCTGTAGGTGTCCCAGGTCTGCCTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR GCA 90 bp CATACGACAGGCAGACCTGGGACACCTACAGGGAGTGGACAGGAAACGGCAGGGGAGACTCAGAGAGCCTaGTGGGTGGCAGTCACAGGG +
Preference number: 4 (lower is better)
Translates to: HTTGRPGTPTGSGQETAGETQRA*WVAVTG
Trigger: CCCTGTGACTGCCACCCAGCAGGCTCTCTGAGTCTC...CCCTGCCGTTTCCTGTCCACTCCCTGTAGGTGTCCCAGGTCTGCCTGTCGTATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR TCA 90 bp CCATCTTACCTTGCCCTGTGGCTTTGCAGGCCCACGTGGCCTCAGGTGACACTTCATCGTCGTCCTCTCTaGCCAGGAGGGCAGTGTGTG +
Preference number: 4 (lower is better)
Translates to: PSYLALWLCRPTWPQVTLHRRPL*PGGQCV
Trigger: CACACACTGCCCTCCTGGTCAGAGAGGACGACGATG...AAGTGTCACCTGAGGCCACGTGGGCCTGCAAAGCCACAGGGCAAGGTAAGATGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR TCA 90 bp CATACGACAGGCAGACCTGGGACACCTACAGGGAGTGGACAGGAAACGGCAGGGAGTTGCCCACAGCATTaGGATCCACGTTCCCGCTGC +
Preference number: 4 (lower is better)
Translates to: HTTGRPGTPTGSGQETAGSCPQH*DPRSRC
Trigger: GCAGCGGGAACGTGGATCTCAATGCTGTGGGCAACT...CCCTGCCGTTTCCTGTCCACTCCCTGTAGGTGTCCCAGGTCTGCCTGTCGTATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR TCA 90 bp CAGGCAGACCTGGGACACCTACAGGGAGTGGACAGGAAACGGCAGGGTGGGGAGAAGGATCCAAGTGGGTaGCATTTGCAGCTCTGGCAG +
Preference number: 4 (lower is better)
Translates to: QADLGHLQGVDRKRQGGEKDPSG*HLQLWQ
Trigger: CTGCCAGAGCTGCAAATGTCACCCACTTGGATCCTT...CTCCCCACCCTGCCGTTTCCTGTCCACTCCCTGTAGGTGTCCCAGGTCTGCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR TCA 90 bp ACATACGACAGGCAGACCTGGGACACCTACAGGGAGTGGACAGGAAACGGCAGGTGGATGCAGGTCTTCTaGGCTCCAGCCTGGGCACAG +
Preference number: 4 (lower is better)
Translates to: TYDRQTWDTYREWTGNGRWMQVF*APAWAQ
Trigger: CTGTGCCCAGGCTGGAGCTCAGAAGACCTGCATCCA...CCTGCCGTTTCCTGTCCACTCCCTGTAGGTGTCCCAGGTCTGCCTGTCGTATGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR TCA 90 bp CAGGCAGACCTGGGACACCTACAGGGAGTGGACAGGAAACGGCAGGGTGGGGAGCTTCACAAGCAGCTCTaGCAGGACCTTGGTGTCCTT +
Preference number: 4 (lower is better)
Translates to: QADLGHLQGVDRKRQGGELHKQL*QDLGVL
Trigger: AAGGACACCAAGGTCCTGTCAGAGCTGCTTGTGAAG...CTCCCCACCCTGCCGTTTCCTGTCCACTCCCTGTAGGTGTCCCAGGTCTGCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp AGCATTCACGTGAACATACGACAGGCAGACCTGGGACACCTACAGGGAGTGGACGCATCGTCGCAGCGCTaGCACTGTAGCCCAGCCCCT +
Preference number: 4 (lower is better)
Translates to: SIHVNIRQADLGHLQGVDASSQR*HCSPAP
Trigger: AGGGGCTGGGCTACAGTGCCAGCGCTGCGACGATGC...GTCCACTCCCTGTAGGTGTCCCAGGTCTGCCTGTCGTATGTTCACGTGAATGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp CATACGACAGGCAGACCTGGGACACCTACAGGGAGTGGACAGGAAACGGCAGGGCCCTCACTGAGTGAGTaGAATCCAGGCAGGCAGCGA +
Preference number: 4 (lower is better)
Translates to: HTTGRPGTPTGSGQETAGPSLSE*NPGRQR
Trigger: TCGCTGCCTGCCTGGATTCCACTCACTCAGTGAGGG...CCCTGCCGTTTCCTGTCCACTCCCTGTAGGTGTCCCAGGTCTGCCTGTCGTATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp TGGCCTCAGGTGACACTTCCAGGAACCCTGTTAGAATCTGGGCACTGCTTGATCCATCGGCGGCAGGGCTaGGGAGCTCCAGAGAGCCCT +
Preference number: 4 (lower is better)
Translates to: WPQVTLPGTLLESGHCLIHRRQG*GAPESP
Trigger: AGGGCTCTCTGGAGCTCCCCAGCCCTGCCGCCGATG...GATCAAGCAGTGCCCAGATTCTAACAGGGTTCCTGGAAGTGTCACCTGAGGCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR TCA 90 bp GCCAGGCTCCCACATCCCTGTGACATACTTCATGACAGGTGGGGCCACAAGACCGGGGCCAGGCCGATGTaGGCTGAACTTCACACAAGA +
Preference number: 4 (lower is better)
Translates to: ARLPHPCDILHDRWGHKTGARPM*AELHTR
Trigger: TCTTGTGTGAAGTTCAGCTCACATCGGCCTGGCCCC...GGTCTTGTGGCCCCACCTGTCATGAAGTATGTCACAGGGATGTGGGAGCCTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR GCA 90 bp CCAGTGCCTAGGCTCTGCTGTGTTCTAAAGAGCTCTGAGAAAAAGAGGGGGTATTGGCATCCTCGGCGGTaGCTCGGGCCCACGGACGGT +
Preference number: 4 (lower is better)
Translates to: PVPRLCCVLKSSEKKRGYWHPRR*LGPTDG
Trigger: ACCGTCCGTGGGCCCGAGGCACCGCCGAGGATGCCA...ATACCCCCTCTTTTTCTCAGAGCTCTTTAGAACACAGCAGAGCCTAGGCACTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR GCA 90 bp GGCTCCCACATCCCTGTGACATACTTCATGACAGGTGGGGCCACAAGACCAGTCGTGCACTCCTCAGAGTaGCCACTGCAGTTGCAGGGC +
Preference number: 4 (lower is better)
Translates to: GSHIPVTYFMTGGATRPVVHSSE*PLQLQG
Trigger: GCCCTGCAACTGCAGTGGGCACTCTGAGGAGTGCAC...GACTGGTCTTGTGGCCCCACCTGTCATGAAGTATGTCACAGGGATGTGGGAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR GCA 90 bp GCCTCAGGTGACACTTCCAGGAACCCTGTTAGAATCTGGGCACTGCTTGATCTGTGCGGGGGTCACAGGTaGCCAAGCTGCCGGCGACAT +
Preference number: 4 (lower is better)
Translates to: ASGDTSRNPVRIWALLDLCGGHR*PSCRRH
Trigger: ATGTCGCCGGCAGCTTGGGCACCTGTGACCCCCGCA...CAGATCAAGCAGTGCCCAGATTCTAACAGGGTTCCTGGAAGTGTCACCTGAGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR GCA 90 bp ACATACGACAGGCAGACCTGGGACACCTACAGGGAGTGGACAGGAAACGGCAGGCCCATGCTTCTGATCTaGCAGCCACCAGCTCCATGG +
Preference number: 4 (lower is better)
Translates to: TYDRQTWDTYREWTGNGRPMLLI*QPPAPW
Trigger: CCATGGAGCTGGTGGCTGGCAGATCAGAAGCATGGG...CCTGCCGTTTCCTGTCCACTCCCTGTAGGTGTCCCAGGTCTGCCTGTCGTATGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR GCA 90 bp CATACGACAGGCAGACCTGGGACACCTACAGGGAGTGGACAGGAAACGGCAGGGCTCAGCACCTGCAACTaGTCCCAAGTGGCCTTCACA +
Preference number: 4 (lower is better)
Translates to: HTTGRPGTPTGSGQETAGLSTCN*SQVAFT
Trigger: TGTGAAGGCCACTTGGGAGCAGTTGCAGGTGCTGAG...CCCTGCCGTTTCCTGTCCACTCCCTGTAGGTGTCCCAGGTCTGCCTGTCGTATG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR GCA 90 bp CATAGTGGGTCCAGGGCCAGCTCTGTGACCATGCACATGGGACTTTCTGAGGCTTGCCCTCTCAGCACCTaGAACTGCTCCCAAGTGGCC +
Preference number: 4 (lower is better)
Translates to: HSGSRASSVTMHMGLSEACPLST*NCSQVA
Trigger: GGCCACTTGGGAGCAGTTGCAGGTGCTGAGAGGGCA...AGCCTCAGAAAGTCCCATGTGCATGGTCACAGAGCTGGCCCTGGACCCACTATG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR GCA 90 bp CATAGTGGGTCCAGGGCCAGCTCTGTGACCATGCACATGGGACTTTCTGAGGCTCTGTCCTCCAGTTCCTaGTGGGCTTCCGAGGCCACT +
Preference number: 4 (lower is better)
Translates to: HSGSRASSVTMHMGLSEALSSSS*WASEAT
Trigger: AGTGGCCTCGGAAGCCCAGCAGGAACTGGAGGACAG...AGCCTCAGAAAGTCCCATGTGCATGGTCACAGAGCTGGCCCTGGACCCACTATG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR GCA 90 bp CATAGTGGGTCCAGGGCCAGCTCTGTGACCATGCACATGGGACTTTCTGAGGCTACCTCGGGCTCCTTCTaGTCCAGCTTCTGCTCCAGG +
Preference number: 4 (lower is better)
Translates to: HSGSRASSVTMHMGLSEATSGSF*SSFCSR
Trigger: CCTGGAGCAGAAGCTGGAGCAGAAGGAGCCCGAGGT...AGCCTCAGAAAGTCCCATGTGCATGGTCACAGAGCTGGCCCTGGACCCACTATG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp TTCCTCTGGGACCTGGGGAAGGGATTGGGCTTGCAAAGGTGGCTGTTATCCCAGGCTGGAAGTGGAAGGTaGGCAGTGGGGACTCTGCCT +
Preference number: 4 (lower is better)
Translates to: FLWDLGKGLGLQRWLLSQAGSGR*AVGTLP
Trigger: AGGCAGAGTCCCCACTGCCCACCTTCCACTTCCAGC...CTGGGATAACAGCCACCTTTGCAAGCCCAATCCCTTCCCCAGGTCCCAGAGGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR TCA 90 bp CATACGACAGGCAGACCTGGGACACCTACAGGGAGTGGACAGGAAACGGCAGGGTCGCATTCACTGGCGTaGCCATTGCATTTGCACCTG +
Preference number: 4 (lower is better)
Translates to: HTTGRPGTPTGSGQETAGSHSLA*PLHLHL
Trigger: CAGGTGCAAATGCAATGGTCACGCCAGTGAATGCGA...CCCTGCCGTTTCCTGTCCACTCCCTGTAGGTGTCCCAGGTCTGCCTGTCGTATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR TCA 90 bp TGTCTGGTACCTCAGTTCTCAGAGCTGCTGGGTGACCAGTTAGGGGACAGAGGAGGGCTGCGTCACCAATaGCTTGCTTCACCGTGGCCA +
Preference number: 4 (lower is better)
Translates to: CLVPQFSELLGDQLGDRGGLRHQ*LASPWP
Trigger: TGGCCACGGTGAAGCAAGTCATTGGTGACGCAGCCC...TCCTCTGTCCCCTAACTGGTCACCCAGCAGCTCTGAGAACTGAGGTACCAGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR GCA 90 bp TTCCTCTGGGACCTGGGGAAGGGATTGGGCTTGCAAAGGTGGCTGTTATCCCAGAGTGCCCACTGCAGTTaGAGGGCAGACACTCGTTGG +
Preference number: 4 (lower is better)
Translates to: FLWDLGKGLGLQRWLLSQSAHCS*RADTRW
Trigger: CCAACGAGTGTCTGCCCTGCAACTGCAGTGGGCACT...CTGGGATAACAGCCACCTTTGCAAGCCCAATCCCTTCCCCAGGTCCCAGAGGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR GCA 90 bp CATACGACAGGCAGACCTGGGACACCTACAGGGAGTGGACAGGAAACGGCAGGGTTCTGCTCCAGCTTCTaGTCCAGGGCCTTCACTTTC +
Preference number: 4 (lower is better)
Translates to: HTTGRPGTPTGSGQETAGFCSSF*SRAFTF
Trigger: GAAAGTGAAGGCCCTGGAGCAGAAGCTGGAGCAGAA...CCCTGCCGTTTCCTGTCCACTCCCTGTAGGTGTCCCAGGTCTGCCTGTCGTATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR GCA 90 bp ACATACGACAGGCAGACCTGGGACACCTACAGGGAGTGGACAGGAAACGGCAGGGCTTCCTCCAGCTCCTaGTTGTGTGCTTCTGAGGTC +
Preference number: 4 (lower is better)
Translates to: TYDRQTWDTYREWTGNGRASSSS*LCASEV
Trigger: GACCTCAGAAGCACACAAGCAGGAGCTGGAGGAAGC...CCTGCCGTTTCCTGTCCACTCCCTGTAGGTGTCCCAGGTCTGCCTGTCGTATGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp TCCTCAGAATCACAATCAGTTCCTCTGGGACCTGGGGAAGGGATTGGGCTTGCAGCCCACGGACGGTCCTaGAAGAAGGGCAGACAACGC +
Preference number: 4 (lower is better)
Translates to: SSESQSVPLGPGEGIGLAAHGRS*KKGRQR
Trigger: GCGTTGTCTGCCCTTCTTCCAGGACCGTCCGTGGGC...TGCAAGCCCAATCCCTTCCCCAGGTCCCAGAGGAACTGATTGTGATTCTGAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp TGGCCTCAGGTGACACTTCCAGGAACCCTGTTAGAATCTGGGCACTGCTTGATCAGGGCAGACACTCGTTaGCATCCTCGGCGGTGCCTC +
Preference number: 4 (lower is better)
Translates to: WPQVTLPGTLLESGHCLIRADTR*HPRRCL
Trigger: GAGGCACCGCCGAGGATGCCAACGAGTGTCTGCCCT...GATCAAGCAGTGCCCAGATTCTAACAGGGTTCCTGGAAGTGTCACCTGAGGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp TGGCCTCAGGTGACACTTCCAGGAACCCTGTTAGAATCTGGGCACTGCTTGATCGGACCCTCGGTGTGGTaGCCACACAGGCAGATCCCT +
Preference number: 4 (lower is better)
Translates to: WPQVTLPGTLLESGHCLIGPSVW*PHRQIP
Trigger: AGGGATCTGCCTGTGTGGCCACCACACCGAGGGTCC...GATCAAGCAGTGCCCAGATTCTAACAGGGTTCCTGGAAGTGTCACCTGAGGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp TGTCTGGTACCTCAGTTCTCAGAGCTGCTGGGTGACCAGTTAGGGGACAGAGGAGCTCATAGCTGGCGTTaGAGGCGAGCAGGGCCCTTT +
Preference number: 4 (lower is better)
Translates to: CLVPQFSELLGDQLGDRGAHSWR*RRAGPF
Trigger: AAAGGGCCCTGCTCGCCTCCAACGCCAGCTATGAGC...TCCTCTGTCCCCTAACTGGTCACCCAGCAGCTCTGAGAACTGAGGTACCAGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp TGTCTGGTACCTCAGTTCTCAGAGCTGCTGGGTGACCAGTTAGGGGACAGAGGAGCTGCCTGCACCTCCTaGTACCTGTCCTCCAGTTCC +
Preference number: 4 (lower is better)
Translates to: CLVPQFSELLGDQLGDRGAACTS*YLSSSS
Trigger: GGAACTGGAGGACAGGTACCAGGAGGTGCAGGCAGC...TCCTCTGTCCCCTAACTGGTCACCCAGCAGCTCTGAGAACTGAGGTACCAGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp ACATACGACAGGCAGACCTGGGACACCTACAGGGAGTGGACAGGAAACGGCAGGCTCAGGCCCCTGGCTTaGAAGTTCATTGCTTCAGGG +
Preference number: 4 (lower is better)
Translates to: TYDRQTWDTYREWTGNGRLRPLA*KFIASG
Trigger: CCCTGAAGCAATGAACTTCCAAGCCAGGGGCCTGAG...CCTGCCGTTTCCTGTCCACTCCCTGTAGGTGTCCCAGGTCTGCCTGTCGTATGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR TCA 90 bp TGTGGAATGTGCCCAAGCTCAGGACTGCCTCTCCACAGCTCTAGACTCTCATATGGCTGTGGAAGTCTGTaGGGTAGGAGGCGTCGTGGC +
Preference number: 4 (lower is better)
Translates to: CGMCPSSGLPLHSSRLSYGCGSL*GRRRRG
Trigger: GCCACGACGCCTCCTACCTCACAGACTTCCACAGCC...ATATGAGAGTCTAGAGCTGTGGAGAGGCAGTCCTGAGCTTGGGCACATTCCACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR TCA 90 bp TGTCTGGTACCTCAGTTCTCAGAGCTGCTGGGTGACCAGTTAGGGGACAGAGGAGAACTTCTTTGGGGCTaGGAGTTCCTCCCCTCCTCG +
Preference number: 4 (lower is better)
Translates to: CLVPQFSELLGDQLGDRGELLWG*EFLPSS
Trigger: CGAGGAGGGGAGGAACTCTCAGCCCCAAAGAAGTTC...TCCTCTGTCCCCTAACTGGTCACCCAGCAGCTCTGAGAACTGAGGTACCAGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR TCA 90 bp TGTCTGGTACCTCAGTTCTCAGAGCTGCTGGGTGACCAGTTAGGGGACAGAGGACTGGCTGTCCATAGCTaGGTCTCTGGTCTCCCAGGA +
Preference number: 4 (lower is better)
Translates to: CLVPQFSELLGDQLGDRGLAVHS*VSGLPG
Trigger: TCCTGGGAGACCAGAGACTCAGCTATGGACAGCCAG...TCCTCTGTCCCCTAACTGGTCACCCAGCAGCTCTGAGAACTGAGGTACCAGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR TCA 90 bp CCAGTGCCTAGGCTCTGCTGTGTTCTAAAGAGCTCTGAGAAAAAGAGGGGGTATATGCCCAGGGCAGTCTaGGCTGCCTGCACCTCCTGG +
Preference number: 4 (lower is better)
Translates to: PVPRLCCVLKSSEKKRGYMPRAV*AACTSW
Trigger: CCAGGAGGTGCAGGCAGCTCAGACTGCCCTGGGCAT...ATACCCCCTCTTTTTCTCAGAGCTCTTTAGAACACAGCAGAGCCTAGGCACTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR TCA 90 bp TGTCTGGTACCTCAGTTCTCAGAGCTGCTGGGTGACCAGTTAGGGGACAGAGGAGGGTCTCTGCTCCTATaGCGGTCACCTTGGCAGCTT +
Preference number: 4 (lower is better)
Translates to: CLVPQFSELLGDQLGDRGGSLLL*RSPWQL
Trigger: AAGCTGCCAAGGTGACCGTCATAGGAGCAGAGACCC...TCCTCTGTCCCCTAACTGGTCACCCAGCAGCTCTGAGAACTGAGGTACCAGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR TCA 90 bp GTGGCCTCAGGTGACACTTCCAGGAACCCTGTTAGAATCTGGGCACTGCTTGATGTCTCGTTCAGGGTCTaGGCAGGGGCTTGGTGGACA +
Preference number: 4 (lower is better)
Translates to: VASGDTSRNPVRIWALLDVSFRV*AGAWWT
Trigger: TGTCCACCAAGCCCCTGCTCAGACCCTGAACGAGAC...ATCAAGCAGTGCCCAGATTCTAACAGGGTTCCTGGAAGTGTCACCTGAGGCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR TCA 90 bp GCCAGGCTCCCACATCCCTGTGACATACTTCATGACAGGTGGGGCCACAAGACCTCGTCCTCAAAGCTCTaGATCTGCAGCTCCTGTCGA +
Preference number: 4 (lower is better)
Translates to: ARLPHPCDILHDRWGHKTSSSKL*ICSSCR
Trigger: TCGACAGGAGCTGCAGATTCAGAGCTTTGAGGACGA...GGTCTTGTGGCCCCACCTGTCATGAAGTATGTCACAGGGATGTGGGAGCCTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR GCA 90 bp TCCTCAGAATCACAATCAGTTCCTCTGGGACCTGGGGAAGGGATTGGGCTTGCACTGGTGACCCACTCCTaGAGCACAGGGCTCTCCTCA +
Preference number: 4 (lower is better)
Translates to: SSESQSVPLGPGEGIGLALVTHS*STGLSS
Trigger: TGAGGAGAGCCCTGTGCTGCAGGAGTGGGTCACCAG...TGCAAGCCCAATCCCTTCCCCAGGTCCCAGAGGAACTGATTGTGATTCTGAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR GCA 90 bp TGGCCTCAGGTGACACTTCCAGGAACCCTGTTAGAATCTGGGCACTGCTTGATCGGGCAGTGGGGACTCTaGCTCCTCAGAAGTCTCCTG +
Preference number: 4 (lower is better)
Translates to: WPQVTLPGTLLESGHCLIGQWGL*LLRSLL
Trigger: CAGGAGACTTCTGAGGAGGCAGAGTCCCCACTGCCC...GATCAAGCAGTGCCCAGATTCTAACAGGGTTCCTGGAAGTGTCACCTGAGGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR GCA 90 bp CATAGTGGGTCCAGGGCCAGCTCTGTGACCATGCACATGGGACTTTCTGAGGCTCAGGAGGGCAGTGTGTaGACACCACATCTCCACTCT +
Preference number: 4 (lower is better)
Translates to: HSGSRASSVTMHMGLSEAQEGSV*TPHLHS
Trigger: AGAGTGGAGATGTGGTGTGCACACACTGCCCTCCTG...AGCCTCAGAAAGTCCCATGTGCATGGTCACAGAGCTGGCCCTGGACCCACTATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR GCA 90 bp TTCCTCTGGGACCTGGGGAAGGGATTGGGCTTGCAAAGGTGGCTGTTATCCCAGAGAGGGGCTTCTCCCTaGAGAATGTCTAGTGGTCCC +
Preference number: 4 (lower is better)
Translates to: FLWDLGKGLGLQRWLLSQRGASP*RMSSGP
Trigger: GGGACCACTAGACATTCTGCAGGGAGAAGCCCCTCT...CTGGGATAACAGCCACCTTTGCAAGCCCAATCCCTTCCCCAGGTCCCAGAGGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR GCA 90 bp GCCAGGCTCCCACATCCCTGTGACATACTTCATGACAGGTGGGGCCACAAGACCTCCCAGCATCCTCTCTaGCTGCTTGGTCTTCCTCTT +
Preference number: 4 (lower is better)
Translates to: ARLPHPCDILHDRWGHKTSQHPL*LLGLPL
Trigger: AAGAGGAAGACCAAGCAGGCAGAGAGGATGCTGGGA...GGTCTTGTGGCCCCACCTGTCATGAAGTATGTCACAGGGATGTGGGAGCCTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp AGCATTCACGTGAACATACGACAGGCAGACCTGGGACACCTACAGGGAGTGGACACAGCGCTCACAGTGTaGCCCAGTTGTGTGGTCACG +
Preference number: 4 (lower is better)
Translates to: SIHVNIRQADLGHLQGVDTALTV*PSCVVT
Trigger: CGTGACCACACAACTGGGCCACACTGTGAGCGCTGT...GTCCACTCCCTGTAGGTGTCCCAGGTCTGCCTGTCGTATGTTCACGTGAATGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp GTGGCCTCAGGTGACACTTCCAGGAACCCTGTTAGAATCTGGGCACTGCTTGATTCAGGAGCTCATAGCTaGCGTTGGAGGCGAGCAGGG +
Preference number: 4 (lower is better)
Translates to: VASGDTSRNPVRIWALLDSGAHS*RWRRAG
Trigger: CCCTGCTCGCCTCCAACGCCAGCTATGAGCTCCTGA...ATCAAGCAGTGCCCAGATTCTAACAGGGTTCCTGGAAGTGTCACCTGAGGCCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
3UTR CAA 72 bp TGGGGAATCGTCCACAAAAGATACCTCCATCTTACCTaGCCCTGTGGCTTTGCAGGCCCACGTGGCCTCAGG +
Preference number: 4 (lower is better)
Translates to: WGIVHKRYLHLT*PCGFAGPRGLR
Trigger: CCTGAGGCCACGTGGGCCTGCAAAGCCACAGGGCAAGGTAAGATGGAGGTATCTTTTGTGGACGATTCCCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR TCA 90 bp AGCAGGCTTAGAATGACAGCCAGGCTCCCACATCCCTGTGACATACTTCATGACCCCTCCAGTCTCAGCTaGATAGGAGGTGGGGAGCCT +
Preference number: 4 (lower is better)
Translates to: SRLRMTARLPHPCDILHDPSSLS*IGGGEP
Trigger: AGGCTCCCCACCTCCTATTCAGCTGAGACTGGAGGG...GTCATGAAGTATGTCACAGGGATGTGGGAGCCTGGCTGTCATTCTAAGCCTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR TCA 90 bp AGCATTCACGTGAACATACGACAGGCAGACCTGGGACACCTACAGGGAGTGGACAAGGACCTCCTCCTCTaGGGACTGCAATGTCTCCTC +
Preference number: 4 (lower is better)
Translates to: SIHVNIRQADLGHLQGVDKDLLL*GLQCLL
Trigger: GAGGAGACATTGCAGTCCTCAGAGGAGGAGGTCCTT...GTCCACTCCCTGTAGGTGTCCCAGGTCTGCCTGTCGTATGTTCACGTGAATGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR TCA 90 bp GTGGCCTCAGGTGACACTTCCAGGAACCCTGTTAGAATCTGGGCACTGCTTGATAGCTGCCTCAGTTTGTaGTGCAGGGCTCCGTGGGAA +
Preference number: 4 (lower is better)
Translates to: VASGDTSRNPVRIWALLDSCLSL*CRAPWE
Trigger: TTCCCACGGAGCCCTGCATCACAAACTGAGGCAGCT...ATCAAGCAGTGCCCAGATTCTAACAGGGTTCCTGGAAGTGTCACCTGAGGCCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR GCA 90 bp TGTCTGGTACCTCAGTTCTCAGAGCTGCTGGGTGACCAGTTAGGGGACAGAGGAAACAGAAGCAGCTGCTaGAGCCCACTGGATTGTGGG +
Preference number: 4 (lower is better)
Translates to: CLVPQFSELLGDQLGDRGNRSSC*SPLDCG
Trigger: CCCACAATCCAGTGGGCTGCAGCAGCTGCTTCTGTT...TCCTCTGTCCCCTAACTGGTCACCCAGCAGCTCTGAGAACTGAGGTACCAGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR GCA 90 bp TGGCCTCAGGTGACACTTCCAGGAACCCTGTTAGAATCTGGGCACTGCTTGATCAGACAGAGCCAAGCCTaGTCCCTCCAGTCTCAGCTG +
Preference number: 4 (lower is better)
Translates to: WPQVTLPGTLLESGHCLIRQSQA*SLQSQL
Trigger: CAGCTGAGACTGGAGGGAGCAGGCTTGGCTCTGTCT...GATCAAGCAGTGCCCAGATTCTAACAGGGTTCCTGGAAGTGTCACCTGAGGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR GCA 90 bp GGCTCCCACATCCCTGTGACATACTTCATGACAGGTGGGGCCACAAGACCAGTCCATGCTGGTTGCAGGTaGAGGGAATGCAGTTGGCAT +
Preference number: 4 (lower is better)
Translates to: GSHIPVTYFMTGGATRPVHAGCR*RECSWH
Trigger: ATGCCAACTGCATTCCCTGCACCTGCAACCAGCATG...GACTGGTCTTGTGGCCCCACCTGTCATGAAGTATGTCACAGGGATGTGGGAGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR GCA 90 bp GCCTCAGGTGACACTTCCAGGAACCCTGTTAGAATCTGGGCACTGCTTGATCTGTGTTGGGGTCACAGGTaGCATGCTGGTTGCAGGTGC +
Preference number: 4 (lower is better)
Translates to: ASGDTSRNPVRIWALLDLCWGHR*HAGCRC
Trigger: GCACCTGCAACCAGCATGGCACCTGTGACCCCAACA...CAGATCAAGCAGTGCCCAGATTCTAACAGGGTTCCTGGAAGTGTCACCTGAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR GCA 90 bp AGCATTCACGTGAACATACGACAGGCAGACCTGGGACACCTACAGGGAGTGGACCCCTCAGGTCACAGCTaGAGGGAGCACATTTGTCCA +
Preference number: 4 (lower is better)
Translates to: SIHVNIRQADLGHLQGVDPSGHS*REHICP
Trigger: TGGACAAATGTGCTCCCTGCAGCTGTGACCTGAGGG...GTCCACTCCCTGTAGGTGTCCCAGGTCTGCCTGTCGTATGTTCACGTGAATGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR GCA 90 bp TTTAGAGAGTACACACTGAGGACTACATACAGGGTCATCTGTGGAGGTGTGAGCTCCAGGCCCACCATCTaGTGCAGGAAGGTCCCCCGG +
Preference number: 4 (lower is better)
Translates to: FREYTLRTTYRVICGGVSSRPTI*CRKVPR
Trigger: CCGGGGGACCTTCCTGCAGCAGATGGTGGGCCTGGA...GCTCACACCTCCACAGATGACCCTGTATGTAGTCCTCAGTGTGTACTCTCTAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR GCA 90 bp TGGCCTCAGGTGACACTTCCAGGAACCCTGTTAGAATCTGGGCACTGCTTGATCGCTCTGCCAGCTGGATaGAGGTCTTCTGAGCTCCAG +
Preference number: 4 (lower is better)
Translates to: WPQVTLPGTLLESGHCLIALPAG*RSSELQ
Trigger: CTGGAGCTCAGAAGACCTGCATCCAGCTGGCAGAGC...GATCAAGCAGTGCCCAGATTCTAACAGGGTTCCTGGAAGTGTCACCTGAGGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR GCA 90 bp TGTCTGGTACCTCAGTTCTCAGAGCTGCTGGGTGACCAGTTAGGGGACAGAGGACTTCACCGTGGCCAGTaGCTTTTCAGCTTTGGGCAG +
Preference number: 4 (lower is better)
Translates to: CLVPQFSELLGDQLGDRGLHRGQ*LFSFGQ
Trigger: CTGCCCAAAGCTGAAAAGGCACTGGCCACGGTGAAG...TCCTCTGTCCCCTAACTGGTCACCCAGCAGCTCTGAGAACTGAGGTACCAGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR GCA 90 bp CAGGCAGACCTGGGACACCTACAGGGAGTGGACAGGAAACGGCAGGGTGGGGAGTCAGTTCTGCTTCTTTaGTTTTCTTCTTGGTGCTGG +
Preference number: 4 (lower is better)
Translates to: QADLGHLQGVDRKRQGGESVLLL*FSSWCW
Trigger: CCAGCACCAAGAAGAAAAGCAAAGAAGCAGAACTGA...CTCCCCACCCTGCCGTTTCCTGTCCACTCCCTGTAGGTGTCCCAGGTCTGCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR GCA 90 bp GTGGCCTCAGGTGACACTTCCAGGAACCCTGTTAGAATCTGGGCACTGCTTGATGACGGTAGCCCTGCTTaGCTTCCCTCAGCAAAGCTC +
Preference number: 4 (lower is better)
Translates to: VASGDTSRNPVRIWALLDDGSPA*LPSAKL
Trigger: GAGCTTTGCTGAGGGAAGGCAAGCAGGGCTACCGTC...ATCAAGCAGTGCCCAGATTCTAACAGGGTTCCTGGAAGTGTCACCTGAGGCCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp CCAGTGCCTAGGCTCTGCTGTGTTCTAAAGAGCTCTGAGAAAAAGAGGGGGTATCCCGAAGGCCATGGATaGGCTCTGCCACCAGGTGCT +
Preference number: 4 (lower is better)
Translates to: PVPRLCCVLKSSEKKRGYPEGHG*ALPPGA
Trigger: AGCACCTGGTGGCAGAGCCCATCCATGGCCTTCGGG...ATACCCCCTCTTTTTCTCAGAGCTCTTTAGAACACAGCAGAGCCTAGGCACTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp TGTGGAATGTGCCCAAGCTCAGGACTGCCTCTCCACAGCTCTAGACTCTCATATGCTGCTGCAGCCCACTaGATTGTGGGGCTGCAGGTT +
Preference number: 4 (lower is better)
Translates to: CGMCPSSGLPLHSSRLSYAAAAH*IVGLQV
Trigger: AACCTGCAGCCCCACAATCCAGTGGGCTGCAGCAGC...ATATGAGAGTCTAGAGCTGTGGAGAGGCAGTCCTGAGCTTGGGCACATTCCACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp TGTGTTCTAAAGAGCTCTGAGAAAAAGAGGGGGTATCAGGAAGAAATGCCAGGGACGTTCCCGCTGCACTaGCATCGGCGGCAGGGCTGG +
Preference number: 4 (lower is better)
Translates to: CVLKSSEKKRGYQEEMPGTFPLH*HRRQGW
Trigger: CCAGCCCTGCCGCCGATGCCAGTGCAGCGGGAACGT...CCCTGGCATTTCTTCCTGATACCCCCTCTTTTTCTCAGAGCTCTTTAGAACACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp CCATCTTACCTTGCCCTGTGGCTTTGCAGGCCCACGTGGCCTCAGGTGACACTTGGTGACTCCAATTGGTaGGTGTGCTGGATCCTTTCT +
Preference number: 4 (lower is better)
Translates to: PSYLALWLCRPTWPQVTLGDSNW*VCWILS
Trigger: AGAAAGGATCCAGCACACCCACCAATTGGAGTCACC...AAGTGTCACCTGAGGCCACGTGGGCCTGCAAAGCCACAGGGCAAGGTAAGATGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp GCCTCAGGTGACACTTCCAGGAACCCTGTTAGAATCTGGGCACTGCTTGATCTGGTGCCTTTTCAGCTTTaGGCAGCGCCTCTGCCACAG +
Preference number: 4 (lower is better)
Translates to: ASGDTSRNPVRIWALLDLVPFQL*AAPLPQ
Trigger: CTGTGGCAGAGGCGCTGCCCAAAGCTGAAAAGGCAC...CAGATCAAGCAGTGCCCAGATTCTAACAGGGTTCCTGGAAGTGTCACCTGAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp CCATCTTACCTTGCCCTGTGGCTTTGCAGGCCCACGTGGCCTCAGGTGACACTTTCCTCTCTGCCTGCTTaGTCTTCCTCTTTGTGTCCT +
Preference number: 4 (lower is better)
Translates to: PSYLALWLCRPTWPQVTLSSLPA*SSSLCP
Trigger: AGGACACAAAGAGGAAGACCAAGCAGGCAGAGAGGA...AAGTGTCACCTGAGGCCACGTGGGCCTGCAAAGCCACAGGGCAAGGTAAGATGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
3UTR CAA 72 bp AATCAGTTCCTCTGGGACCTGGGGAAGGGATTGGGCTaGCAAAGGTGGCTGTTATCCCAGTGCCTAGGCTCT +
Preference number: 4 (lower is better)
Translates to: NQFLWDLGKGLG*QRWLLSQCLGS
Trigger: AGAGCCTAGGCACTGGGATAACAGCCACCTTTGCAAGCCCAATCCCTTCCCCAGGTCCCAGAGGAACTGATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR TCA 90 bp GTGGCCTCAGGTGACACTTCCAGGAACCCTGTTAGAATCTGGGCACTGCTTGATGCGAAGTGTGTCTCCTaGATCACCAGCGCCATCGAT +
Preference number: 4 (lower is better)
Translates to: VASGDTSRNPVRIWALLDAKCVS*ITSAID
Trigger: ATCGATGGCGCTGGTGATTCAGGAGACACACTTCGC...ATCAAGCAGTGCCCAGATTCTAACAGGGTTCCTGGAAGTGTCACCTGAGGCCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR TCA 90 bp CAAACAAGCATTCACGTGAACATACGACAGGCAGACCTGGGACACCTACAGGGATGCAGGTCTTCTCACTaGCTGAGCCCCTCAGGTCAC +
Preference number: 4 (lower is better)
Translates to: QTSIHVNIRQADLGHLQGCRSSH*LSPSGH
Trigger: GTGACCTGAGGGGCTCAGTCAGTGAGAAGACCTGCA...TCCCTGTAGGTGTCCCAGGTCTGCCTGTCGTATGTTCACGTGAATGCTTGTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR GCA 90 bp TGTGGAATGTGCCCAAGCTCAGGACTGCCTCTCCACAGCTCTAGACTCTCATATACAGAGGTGGGGTACTaGACCCCGAAGGCCATGGAT +
Preference number: 4 (lower is better)
Translates to: CGMCPSSGLPLHSSRLSYTEVGY*TPKAMD
Trigger: ATCCATGGCCTTCGGGGTGCAGTACCCCACCTCTGT...ATATGAGAGTCTAGAGCTGTGGAGAGGCAGTCCTGAGCTTGGGCACATTCCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR GCA 90 bp GGGTCCTTTATTTCCTCAGAATCACAATCAGTTCCTCTGGGACCTGGGGAAGGGGCTCCCTGTCAAACGTaGACTCCTCAGAGTGCCCAC +
Preference number: 4 (lower is better)
Translates to: GSFISSESQSVPLGPGEGAPCQT*TPQSAH
Trigger: GTGGGCACTCTGAGGAGTGCACGTTTGACAGGGAGC...CCCTTCCCCAGGTCCCAGAGGAACTGATTGTGATTCTGAGGAAATAAAGGACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR GCA 90 bp GGCTCCCACATCCCTGTGACATACTTCATGACAGGTGGGGCCACAAGACCAGTCCATAACAGAAGCAGCTaGTGCAGCCCACTGGATTGT +
Preference number: 4 (lower is better)
Translates to: GSHIPVTYFMTGGATRPVHNRSS*CSPLDC
Trigger: ACAATCCAGTGGGCTGCAGCAGCTGCTTCTGTTATG...GACTGGTCTTGTGGCCCCACCTGTCATGAAGTATGTCACAGGGATGTGGGAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR GCA 90 bp GGGTCCTTTATTTCCTCAGAATCACAATCAGTTCCTCTGGGACCTGGGGAAGGGTGCAGGTGCAGGGAATaGAGTTGGCATAGGGACCCC +
Preference number: 4 (lower is better)
Translates to: GSFISSESQSVPLGPGEGCRCRE*SWHRDP
Trigger: GGGGTCCCTATGCCAACTGCATTCCCTGCACCTGCA...CCCTTCCCCAGGTCCCAGAGGAACTGATTGTGATTCTGAGGAAATAAAGGACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR GCA 90 bp TGGCCTCAGGTGACACTTCCAGGAACCCTGTTAGAATCTGGGCACTGCTTGATCCGTAGAAACCTGGCATaGACCGCTCACAGGATGGAC +
Preference number: 4 (lower is better)
Translates to: WPQVTLPGTLLESGHCLIRRNLA*TAHRMD
Trigger: GTCCATCCTGTGAGCGGTGCATGCCAGGTTTCTACG...GATCAAGCAGTGCCCAGATTCTAACAGGGTTCCTGGAAGTGTCACCTGAGGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp TGTGTTCTAAAGAGCTCTGAGAAAAAGAGGGGGTATCAGGAAGAAATGCCAGGGGCACCCCGAAGGCCATaGATGGGCTCTGCCACCAGG +
Preference number: 4 (lower is better)
Translates to: CVLKSSEKKRGYQEEMPGAPRRP*MGSATR
Trigger: CCTGGTGGCAGAGCCCATCCATGGCCTTCGGGGTGC...CCCTGGCATTTCTTCCTGATACCCCCTCTTTTTCTCAGAGCTCTTTAGAACACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp TGTCTGGTACCTCAGTTCTCAGAGCTGCTGGGTGACCAGTTAGGGGACAGAGGAAACTCTCAGGGCGACTaGTGTGGAACTTCAGCCTCA +
Preference number: 4 (lower is better)
Translates to: CLVPQFSELLGDQLGDRGNSQGD*CGTSAS
Trigger: TGAGGCTGAAGTTCCACACCAGTCGCCCTGAGAGTT...TCCTCTGTCCCCTAACTGGTCACCCAGCAGCTCTGAGAACTGAGGTACCAGACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp GTGGCCTCAGGTGACACTTCCAGGAACCCTGTTAGAATCTGGGCACTGCTTGATTGCAGGGAATGCAGTTaGCATAGGGACCCCCATGAG +
Preference number: 4 (lower is better)
Translates to: VASGDTSRNPVRIWALLDCRECS*HRDPHE
Trigger: CTCATGGGGGTCCCTATGCCAACTGCATTCCCTGCA...ATCAAGCAGTGCCCAGATTCTAACAGGGTTCCTGGAAGTGTCACCTGAGGCCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR TCA 90 bp TTTAGAGAGTACACACTGAGGACTACATACAGGGTCATCTGTGGAGGTGTGAGCGGATGTCAGTGCTGGTaGCCCACTCCTGCAGCACAG +
Preference number: 4 (lower is better)
Translates to: FREYTLRTTYRVICGGVSGCQCW*PTPAAQ
Trigger: CTGTGCTGCAGGAGTGGGTCACCAGCACTGACATCC...GCTCACACCTCCACAGATGACCCTGTATGTAGTCCTCAGTGTGTACTCTCTAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR TCA 90 bp TCCTCAGAATCACAATCAGTTCCTCTGGGACCTGGGGAAGGGATTGGGCTTGCACAGGCCGATGTGAGCTaGACTTCACACAAGAGCACT +
Preference number: 4 (lower is better)
Translates to: SSESQSVPLGPGEGIGLAQADVS*TSHKST
Trigger: AGTGCTCTTGTGTGAAGTTCAGCTCACATCGGCCTG...TGCAAGCCCAATCCCTTCCCCAGGTCCCAGAGGAACTGATTGTGATTCTGAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR GCA 90 bp CTTTATTTCCTCAGAATCACAATCAGTTCCTCTGGGACCTGGGGAAGGGATTGGGCCATGGATGGGCTCTaGCACCAGGTGCTGTCATCG +
Preference number: 4 (lower is better)
Translates to: LYFLRITISSSGTWGRDWAMDGL*HQVLSS
Trigger: CGATGACAGCACCTGGTGGCAGAGCCCATCCATGGC...CCAATCCCTTCCCCAGGTCCCAGAGGAACTGATTGTGATTCTGAGGAAATAAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR GCA 90 bp TCCTCAGAATCACAATCAGTTCCTCTGGGACCTGGGGAAGGGATTGGGCTTGCAACTGGATTGTGGGGCTaGAGGTTAAATGTCCCAGGG +
Preference number: 4 (lower is better)
Translates to: SSESQSVPLGPGEGIGLATGLWG*RLNVPG
Trigger: CCCTGGGACATTTAACCTGCAGCCCCACAATCCAGT...TGCAAGCCCAATCCCTTCCCCAGGTCCCAGAGGAACTGATTGTGATTCTGAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR GCA 90 bp GGTGGTCTTAACACATCAGTGCATCACATACACATATGTGCAAATACTGGGGTGGATCCACGTTCCCGCTaGACTGGCATCGGCGGCAGG +
Preference number: 4 (lower is better)
Translates to: GGLNTSVHHIHICANTGVDPRSR*TGIGGR
Trigger: CCTGCCGCCGATGCCAGTGCAGCGGGAACGTGGATC...CACCCCAGTATTTGCACATATGTGTATGTGATGCACTGATGTGTTAAGACCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR GCA 90 bp GGTGGTCTTAACACATCAGTGCATCACATACACATATGTGCAAATACTGGGGTGCAGGGCTGCAGCGGCTaGAGTCCCTCCCGGAGACAT +
Preference number: 4 (lower is better)
Translates to: GGLNTSVHHIHICANTGVQGCSG*SPSRRH
Trigger: ATGTCTCCGGGAGGGACTGCAGCCGCTGCAGCCCTG...CACCCCAGTATTTGCACATATGTGTATGTGATGCACTGATGTGTTAAGACCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR GCA 90 bp CAAACAAGCATTCACGTGAACATACGACAGGCAGACCTGGGACACCTACAGGGATGTCTCCTCCAGCTCTaGCAGCTGGATGCAGGTCTT +
Preference number: 4 (lower is better)
Translates to: QTSIHVNIRQADLGHLQGCLLQL*QLDAGL
Trigger: AAGACCTGCATCCAGCTGGCAGAGCTGGAGGAGACA...TCCCTGTAGGTGTCCCAGGTCTGCCTGTCGTATGTTCACGTGAATGCTTGTTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR GCA 90 bp TGTGGAATGTGCCCAAGCTCAGGACTGCCTCTCCACAGCTCTAGACTCTCATATCTTCCGAGGCCACTCTaGCTTCCATCAGCTTCAGGA +
Preference number: 4 (lower is better)
Translates to: CGMCPSSGLPLHSSRLSYLPRPL*LPSASG
Trigger: TCCTGAAGCTGATGGAAGGCAGAGTGGCCTCGGAAG...ATATGAGAGTCTAGAGCTGTGGAGAGGCAGTCCTGAGCTTGGGCACATTCCACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp TCCTCAGAATCACAATCAGTTCCTCTGGGACCTGGGGAAGGGATTGGGCTTGCAACGTGCGCTTGTAGATaGCAAAACTCTCAGGGCGAC +
Preference number: 4 (lower is better)
Translates to: SSESQSVPLGPGEGIGLATCACR*QNSQGD
Trigger: GTCGCCCTGAGAGTTTTGCCATCTACAAGCGCACGT...TGCAAGCCCAATCCCTTCCCCAGGTCCCAGAGGAACTGATTGTGATTCTGAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp CCAGTGCCTAGGCTCTGCTGTGTTCTAAAGAGCTCTGAGAAAAAGAGGGGGTATGAGCTGAACTCGTCTTaGCTGCCTGGTGTCCTGAGG +
Preference number: 4 (lower is better)
Translates to: PVPRLCCVLKSSEKKRGYELNSS*LPGVLR
Trigger: CCTCAGGACACCAGGCAGCCAAGACGAGTTCAGCTC...ATACCCCCTCTTTTTCTCAGAGCTCTTTAGAACACAGCAGAGCCTAGGCACTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp AGCAGGCTTAGAATGACAGCCAGGCTCCCACATCCCTGTGACATACTTCATGACTCACAGGTGCCATGCTaGTTGCAGGTGCAGGGAATG +
Preference number: 4 (lower is better)
Translates to: SRLRMTARLPHPCDILHDSQVPC*LQVQGM
Trigger: CATTCCCTGCACCTGCAACCAGCATGGCACCTGTGA...GTCATGAAGTATGTCACAGGGATGTGGGAGCCTGGCTGTCATTCTAAGCCTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp CCAGTGCCTAGGCTCTGCTGTGTTCTAAAGAGCTCTGAGAAAAAGAGGGGGTATCATCTGTCACAGGCTTaGCCAGTGACACCAGGTCGG +
Preference number: 4 (lower is better)
Translates to: PVPRLCCVLKSSEKKRGYHLSQA*PVTPGR
Trigger: CCGACCTGGTGTCACTGGCCAAGCCTGTGACAGATG...ATACCCCCTCTTTTTCTCAGAGCTCTTTAGAACACAGCAGAGCCTAGGCACTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp TGTGGAATGTGCCCAAGCTCAGGACTGCCTCTCCACAGCTCTAGACTCTCATATCTAGGGCATAGCAAGTaGGACACTCTTGGCAGCCTG +
Preference number: 4 (lower is better)
Translates to: CGMCPSSGLPLHSSRLSYLGHSK*DTLGSL
Trigger: CAGGCTGCCAAGAGTGTCCCACTTGCTATGCCCTAG...ATATGAGAGTCTAGAGCTGTGGAGAGGCAGTCCTGAGCTTGGGCACATTCCACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp GCCTCAGGTGACACTTCCAGGAACCCTGTTAGAATCTGGGCACTGCTTGATCTGACCTGGCCTTCAGCTTaGCTGCCTCTTCCTTCACTA +
Preference number: 4 (lower is better)
Translates to: ASGDTSRNPVRIWALLDLTWPSA*LPLPSL
Trigger: TAGTGAAGGAAGAGGCAGCCAAGCTGAAGGCCAGGT...CAGATCAAGCAGTGCCCAGATTCTAACAGGGTTCCTGGAAGTGTCACCTGAGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp CAAACAAGCATTCACGTGAACATACGACAGGCAGACCTGGGACACCTACAGGGACCATCAGCATCAACCTaGCCTTCAGCTTGGCTGCCT +
Preference number: 4 (lower is better)
Translates to: QTSIHVNIRQADLGHLQGPSAST*PSAWLP
Trigger: AGGCAGCCAAGCTGAAGGCCAGGTTGATGCTGATGG...TCCCTGTAGGTGTCCCAGGTCTGCCTGTCGTATGTTCACGTGAATGCTTGTTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp GTGGCCTCAGGTGACACTTCCAGGAACCCTGTTAGAATCTGGGCACTGCTTGATCCAGGTGACTCCAATTaGTGGGTGTGCTGGATCCTT +
Preference number: 4 (lower is better)
Translates to: VASGDTSRNPVRIWALLDPGDSN*WVCWIL
Trigger: AAGGATCCAGCACACCCACCAATTGGAGTCACCTGG...ATCAAGCAGTGCCCAGATTCTAACAGGGTTCCTGGAAGTGTCACCTGAGGCCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp TTTAGAGAGTACACACTGAGGACTACATACAGGGTCATCTGTGGAGGTGTGAGCGTGGCCGTGTCCCTGTaGCTTCTGGCAAGGATCTGG +
Preference number: 4 (lower is better)
Translates to: FREYTLRTTYRVICGGVSVAVSL*LLARIW
Trigger: CCAGATCCTTGCCAGAAGCCACAGGGACACGGCCAC...GCTCACACCTCCACAGATGACCCTGTATGTAGTCCTCAGTGTGTACTCTCTAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
3UTR CAA 72 bp AATCACAATCAGTTCCTCTGGGACCTGGGGAAGGGATaGGGCTTGCAAAGGTGGCTGTTATCCCAGTGCCTA +
Preference number: 4 (lower is better)
Translates to: NHNQFLWDLGKG*GLQRWLLSQCL
Trigger: TAGGCACTGGGATAACAGCCACCTTTGCAAGCCCAATCCCTTCCCCAGGTCCCAGAGGAACTGATTGTGATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR TCA 90 bp TACACACTGAGGACTACATACAGGGTCATCTGTGGAGGTGTGAGCATGTATTCATGCAGCCGCCCTCACTaGGTGAGTGGAATCCAGGCA +
Preference number: 4 (lower is better)
Translates to: YTLRTTYRVICGGVSMYSCSRPH*VSGIQA
Trigger: TGCCTGGATTCCACTCACTCAGTGAGGGCGGCTGCA...TGAATACATGCTCACACCTCCACAGATGACCCTGTATGTAGTCCTCAGTGTGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR TCA 90 bp TTTAGAGAGTACACACTGAGGACTACATACAGGGTCATCTGTGGAGGTGTGAGCCCACAGTCAGACCTTTaGAGCCACCCCTCCATCAGC +
Preference number: 4 (lower is better)
Translates to: FREYTLRTTYRVICGGVSPQSDL*SHPSIS
Trigger: GCTGATGGAGGGGTGGCTTCAAAGGTCTGACTGTGG...GCTCACACCTCCACAGATGACCCTGTATGTAGTCCTCAGTGTGTACTCTCTAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR GCA 90 bp TGGCCTCAGGTGACACTTCCAGGAACCCTGTTAGAATCTGGGCACTGCTTGATCGGCTTGGAAGTTCATTaGTTCAGGGGTGACCAGCAA +
Preference number: 4 (lower is better)
Translates to: WPQVTLPGTLLESGHCLIGLEVH*FRGDQQ
Trigger: TTGCTGGTCACCCCTGAAGCAATGAACTTCCAAGCC...GATCAAGCAGTGCCCAGATTCTAACAGGGTTCCTGGAAGTGTCACCTGAGGCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp TTTAGAGAGTACACACTGAGGACTACATACAGGGTCATCTGTGGAGGTGTGAGCAGAGAGCCTGCTGGGTaGCAGTCACAGGGTTGGCAT +
Preference number: 4 (lower is better)
Translates to: FREYTLRTTYRVICGGVSREPAG*QSQGWH
Trigger: ATGCCAACCCTGTGACTGCCACCCAGCAGGCTCTCT...GCTCACACCTCCACAGATGACCCTGTATGTAGTCCTCAGTGTGTACTCTCTAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp CTTTATTTCCTCAGAATCACAATCAGTTCCTCTGGGACCTGGGGAAGGGATTGGACTCAGAGAGCCTGCTaGGTGGCAGTCACAGGGTTG +
Preference number: 4 (lower is better)
Translates to: LYFLRITISSSGTWGRDWTQRAC*VAVTGL
Trigger: CAACCCTGTGACTGCCACCCAGCAGGCTCTCTGAGT...CCAATCCCTTCCCCAGGTCCCAGAGGAACTGATTGTGATTCTGAGGAAATAAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp CAAACAAGCATTCACGTGAACATACGACAGGCAGACCTGGGACACCTACAGGGACAGCCCACTGGATTGTaGGGCTGCAGGTTAAATGTC +
Preference number: 4 (lower is better)
Translates to: QTSIHVNIRQADLGHLQGQPTGL*GCRLNV
Trigger: GACATTTAACCTGCAGCCCCACAATCCAGTGGGCTG...TCCCTGTAGGTGTCCCAGGTCTGCCTGTCGTATGTTCACGTGAATGCTTGTTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp CCAGTGCCTAGGCTCTGCTGTGTTCTAAAGAGCTCTGAGAAAAAGAGGGGGTATTTGGAAAGCAGGCGCTaGAAGTGGAAGGTGGGCAGT +
Preference number: 4 (lower is better)
Translates to: PVPRLCCVLKSSEKKRGYLESRR*KWKVGS
Trigger: ACTGCCCACCTTCCACTTCCAGCGCCTGCTTTCCAA...ATACCCCCTCTTTTTCTCAGAGCTCTTTAGAACACAGCAGAGCCTAGGCACTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp GCCTCAGGTGACACTTCCAGGAACCCTGTTAGAATCTGGGCACTGCTTGATCTGTCAGAGCAGTCAGATTaGAAAGCAGGCGCTGGAAGT +
Preference number: 4 (lower is better)
Translates to: ASGDTSRNPVRIWALLDLSEQSD*KAGAGS
Trigger: ACTTCCAGCGCCTGCTTTCCAATCTGACTGCTCTGA...CAGATCAAGCAGTGCCCAGATTCTAACAGGGTTCCTGGAAGTGTCACCTGAGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp GTGGCCTCAGGTGACACTTCCAGGAACCCTGTTAGAATCTGGGCACTGCTTGATCCAAAGAAACCTAGCTaGCATCTGTCACAGGCTTGG +
Preference number: 4 (lower is better)
Translates to: VASGDTSRNPVRIWALLDPKKPS*HLSQAW
Trigger: CCAAGCCTGTGACAGATGCCAGCTAGGTTTCTTTGG...ATCAAGCAGTGCCCAGATTCTAACAGGGTTCCTGGAAGTGTCACCTGAGGCCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp CTTTATTTCCTCAGAATCACAATCAGTTCCTCTGGGACCTGGGGAAGGGATTGGCAAGTGGGACACTCTTaGCAGCCTGTGTCGCCATCC +
Preference number: 4 (lower is better)
Translates to: LYFLRITISSSGTWGRDWQVGHS*QPVSPS
Trigger: GGATGGCGACACAGGCTGCCAAGAGTGTCCCACTTG...CCAATCCCTTCCCCAGGTCCCAGAGGAACTGATTGTGATTCTGAGGAAATAAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR TCA 90 bp TACACACTGAGGACTACATACAGGGTCATCTGTGGAGGTGTGAGCATGTATTCAGGTCTTCTCACTGACTaGGCCCCTCAGGTCACAGCT +
Preference number: 4 (lower is better)
Translates to: YTLRTTYRVICGGVSMYSGLLTD*APQVTA
Trigger: AGCTGTGACCTGAGGGGCTCAGTCAGTGAGAAGACC...TGAATACATGCTCACACCTCCACAGATGACCCTGTATGTAGTCCTCAGTGTGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR TCA 90 bp TGTGTTCTAAAGAGCTCTGAGAAAAAGAGGGGGTATCAGGAAGAAATGCCAGGGCCAGGAGCCTGGTCCTaGTGCTGCCTGCTTTCTTCT +
Preference number: 4 (lower is better)
Translates to: CVLKSSEKKRGYQEEMPGPGAWS*CCLLSS
Trigger: AGAAGAAAGCAGGCAGCATCAGGACCAGGCTCCTGG...CCCTGGCATTTCTTCCTGATACCCCCTCTTTTTCTCAGAGCTCTTTAGAACACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR GCA 90 bp TCCTCAGAATCACAATCAGTTCCTCTGGGACCTGGGGAAGGGATTGGGCTTGCACTTCTACATTCTCTTTaGAGGGACAGTTCCCACTGC +
Preference number: 4 (lower is better)
Translates to: SSESQSVPLGPGEGIGLALLHSL*RDSSHC
Trigger: GCAGTGGGAACTGTCCCTGCAAAGAGAATGTAGAAG...TGCAAGCCCAATCCCTTCCCCAGGTCCCAGAGGAACTGATTGTGATTCTGAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR GCA 90 bp GTGGCCTCAGGTGACACTTCCAGGAACCCTGTTAGAATCTGGGCACTGCTTGATTCCAATTGGTGGGTGTaGTGGATCCTTTCTGAAGAC +
Preference number: 4 (lower is better)
Translates to: VASGDTSRNPVRIWALLDSNWWV*WILSED
Trigger: GTCTTCAGAAAGGATCCAGCACACCCACCAATTGGA...ATCAAGCAGTGCCCAGATTCTAACAGGGTTCCTGGAAGTGTCACCTGAGGCCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp ACACAGGTGGTCTTAACACATCAGTGCATCACATACACATATGTGCAAATACTGTGGTGCCCCCACGTGTaGACAGAAGTCCTCCGGGGG +
Preference number: 4 (lower is better)
Translates to: TQVVLTHQCITYTYVQILWCPHV*TEVLRG
Trigger: CCCCCGGAGGACTTCTGTCCACACGTGGGGGCACCA...CAGTATTTGCACATATGTGTATGTGATGCACTGATGTGTTAAGACCACCTGTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp GGTGGTCTTAACACATCAGTGCATCACATACACATATGTGCAAATACTGGGGTGCTCGTCTTGGCTGCCTaGTGTCCTGAGGGCTGGGTA +
Preference number: 4 (lower is better)
Translates to: GGLNTSVHHIHICANTGVLVLAA*CPEGWV
Trigger: TACCCAGCCCTCAGGACACCAGGCAGCCAAGACGAG...CACCCCAGTATTTGCACATATGTGTATGTGATGCACTGATGTGTTAAGACCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp AGCAGGCTTAGAATGACAGCCAGGCTCCCACATCCCTGTGACATACTTCATGACCAGAATTCACAGAACTaGCCTGTGTATCCCTGGGGA +
Preference number: 4 (lower is better)
Translates to: SRLRMTARLPHPCDILHDQNSQN*PVYPWG
Trigger: TCCCCAGGGATACACAGGCCAGTTCTGTGAATTCTG...GTCATGAAGTATGTCACAGGGATGTGGGAGCCTGGCTGTCATTCTAAGCCTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp GGTGGTCTTAACACATCAGTGCATCACATACACATATGTGCAAATACTGGGGTGGGCAGGCAGACACACTaGCCAGTCACAGGGTTGCAG +
Preference number: 4 (lower is better)
Translates to: GGLNTSVHHIHICANTGVGRQTH*PVTGLQ
Trigger: CTGCAACCCTGTGACTGGCCAGTGTGTCTGCCTGCC...CACCCCAGTATTTGCACATATGTGTATGTGATGCACTGATGTGTTAAGACCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp CCAGTGCCTAGGCTCTGCTGTGTTCTAAAGAGCTCTGAGAAAAAGAGGGGGTATTCCAGCTCAGGCCCCTaGCTTGGAAGTTCATTGCTT +
Preference number: 4 (lower is better)
Translates to: PVPRLCCVLKSSEKKRGYSSSGP*LGSSLL
Trigger: AAGCAATGAACTTCCAAGCCAGGGGCCTGAGCTGGA...ATACCCCCTCTTTTTCTCAGAGCTCTTTAGAACACAGCAGAGCCTAGGCACTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp CCAGTGCCTAGGCTCTGCTGTGTTCTAAAGAGCTCTGAGAAAAAGAGGGGGTATCCCTCAGCAAAGCTCTaGAGAGCTTGGCATTGTCCT +
Preference number: 4 (lower is better)
Translates to: PVPRLCCVLKSSEKKRGYPSAKL*RAWHCP
Trigger: AGGACAATGCCAAGCTCTCCAGAGCTTTGCTGAGGG...ATACCCCCTCTTTTTCTCAGAGCTCTTTAGAACACAGCAGAGCCTAGGCACTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
3UTR CAA 72 bp ACACTTCCAGGAACCCTGTTAGAATCTGGGCACTGCTaGATCTGTCTGGTACCTCAGTTCTCAGAGCTGCTG +
Preference number: 4 (lower is better)
Translates to: TLPGTLLESGHC*ICLVPQFSELL
Trigger: CAGCAGCTCTGAGAACTGAGGTACCAGACAGATCAAGCAGTGCCCAGATTCTAACAGGGTTCCTGGAAGTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR TCA 90 bp CCAGTGCCTAGGCTCTGCTGTGTTCTAAAGAGCTCTGAGAAAAAGAGGGGGTATCATCCCCAAACGTGTTaGGCCGATCTAGAGAGATCA +
Preference number: 4 (lower is better)
Translates to: PVPRLCCVLKSSEKKRGYHPQTC*ADLERS
Trigger: TGATCTCTCTAGATCGGCTCAACACGTTTGGGGATG...ATACCCCCTCTTTTTCTCAGAGCTCTTTAGAACACAGCAGAGCCTAGGCACTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR TCA 90 bp GGTGGTCTTAACACATCAGTGCATCACATACACATATGTGCAAATACTGGGGTGACACTCCCATGCTTCTaGTCTGCCAGCCACCAGCTC +
Preference number: 4 (lower is better)
Translates to: GGLNTSVHHIHICANTGVTLPCF*SASHQL
Trigger: GAGCTGGTGGCTGGCAGATCAGAAGCATGGGAGTGT...CACCCCAGTATTTGCACATATGTGTATGTGATGCACTGATGTGTTAAGACCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR TCA 90 bp CTTTATTTCCTCAGAATCACAATCAGTTCCTCTGGGACCTGGGGAAGGGATTGGTCATTGCTTCAGGGGTaGCCAGCAAGCCTAGATGTG +
Preference number: 4 (lower is better)
Translates to: LYFLRITISSSGTWGRDWSLLQG*PASLDV
Trigger: CACATCTAGGCTTGCTGGTCACCCCTGAAGCAATGA...CCAATCCCTTCCCCAGGTCCCAGAGGAACTGATTGTGATTCTGAGGAAATAAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR GCA 90 bp ACACAGGTGGTCTTAACACATCAGTGCATCACATACACATATGTGCAAATACTGGGCTCTGCCACCAGGTaGTGTCATCGGGGCTGTGGA +
Preference number: 4 (lower is better)
Translates to: TQVVLTHQCITYTYVQILGSATR*CHRGCG
Trigger: TCCACAGCCCCGATGACAGCACCTGGTGGCAGAGCC...CAGTATTTGCACATATGTGTATGTGATGCACTGATGTGTTAAGACCACCTGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR GCA 90 bp CCAGTGCCTAGGCTCTGCTGTGTTCTAAAGAGCTCTGAGAAAAAGAGGGGGTATAGCATCCTCTCTGCCTaGTTGGTCTTCCTCTTTGTG +
Preference number: 4 (lower is better)
Translates to: PVPRLCCVLKSSEKKRGYSILSA*LVFLFV
Trigger: CACAAAGAGGAAGACCAAGCAGGCAGAGAGGATGCT...ATACCCCCTCTTTTTCTCAGAGCTCTTTAGAACACAGCAGAGCCTAGGCACTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp TGTGTTCTAAAGAGCTCTGAGAAAAAGAGGGGGTATCAGGAAGAAATGCCAGGGTCACACAAGAGCACTTaGCCAGAATGGCCCGGTCCT +
Preference number: 4 (lower is better)
Translates to: CVLKSSEKKRGYQEEMPGSHKST*PEWPGP
Trigger: AGGACCGGGCCATTCTGGCCAAGTGCTCTTGTGTGA...CCCTGGCATTTCTTCCTGATACCCCCTCTTTTTCTCAGAGCTCTTTAGAACACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp TTTAGAGAGTACACACTGAGGACTACATACAGGGTCATCTGTGGAGGTGTGAGCGCAACTGCTCCCAAGTaGCCTTCACAGAATCCTCCA +
Preference number: 4 (lower is better)
Translates to: FREYTLRTTYRVICGGVSATAPK*PSQNPP
Trigger: TGGAGGATTCTGTGAAGGCCACTTGGGAGCAGTTGC...GCTCACACCTCCACAGATGACCCTGTATGTAGTCCTCAGTGTGTACTCTCTAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR TCA 90 bp TGTGTTCTAAAGAGCTCTGAGAAAAAGAGGGGGTATCAGGAAGAAATGCCAGGGCTGTTCTCATGGCACTaGGATGAGGCAGCACCCAAT +
Preference number: 4 (lower is better)
Translates to: CVLKSSEKKRGYQEEMPGLFSWH*DEAAPN
Trigger: ATTGGGTGCTGCCTCATCTCAGTGCCATGAGAACAG...CCCTGGCATTTCTTCCTGATACCCCCTCTTTTTCTCAGAGCTCTTTAGAACACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp ACACAGGTGGTCTTAACACATCAGTGCATCACATACACATATGTGCAAATACTGAGGAGGAGCCCACTCTaGCTCCATTGCAGAGGACGC +
Preference number: 4 (lower is better)
Translates to: TQVVLTHQCITYTYVQILRRSPL*LHCRGR
Trigger: GCGTCCTCTGCAATGGAGCCAGAGTGGGCTCCTCCT...CAGTATTTGCACATATGTGTATGTGATGCACTGATGTGTTAAGACCACCTGTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR TCA 90 bp GGTGGTCTTAACACATCAGTGCATCACATACACATATGTGCAAATACTGGGGTGAAGCAGTGGCCAGAATaGGGATCACAGTTGCCCACA +
Preference number: 4 (lower is better)
Translates to: GGLNTSVHHIHICANTGVKQWPE*GSQLPT
Trigger: TGTGGGCAACTGTGATCCTCATTCTGGCCACTGCTT...CACCCCAGTATTTGCACATATGTGTATGTGATGCACTGATGTGTTAAGACCACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR GCA 90 bp TACACACTGAGGACTACATACAGGGTCATCTGTGGAGGTGTGAGCATGTATTCAATGGTCTCCAAGTTGTaGTTGTCAGCGCGGATCTCA +
Preference number: 4 (lower is better)
Translates to: YTLRTTYRVICGGVSMYSMVSKL*LSARIS
Trigger: TGAGATCCGCGCTGACAAGCACAACTTGGAGACCAT...TGAATACATGCTCACACCTCCACAGATGACCCTGTATGTAGTCCTCAGTGTGTA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp GGTGGTCTTAACACATCAGTGCATCACATACACATATGTGCAAATACTGGGGTGCCTGAGTTGTCACACTaGAGACTCAGAGAGCCTGCT +
Preference number: 4 (lower is better)
Translates to: GGLNTSVHHIHICANTGVPELSH*RLREPA
Trigger: AGCAGGCTCTCTGAGTCTCCAGTGTGACAACTCAGG...CACCCCAGTATTTGCACATATGTGTATGTGATGCACTGATGTGTTAAGACCACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp CAGGAAAAGGGTCCTTTATTTCCTCAGAATCACAATCAGTTCCTCTGGGACCTGCAGGAGAACACACCTTaGAGTGGCCATAACAGAAGC +
Preference number: 4 (lower is better)
Translates to: QEKGPLFPQNHNQFLWDLQENTP*SGHNRS
Trigger: GCTTCTGTTATGGCCACTCCAAGGTGTGTTCTCCTG...CAGGTCCCAGAGGAACTGATTGTGATTCTGAGGAAATAAAGGACCCTTTTCCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp TGTGTTCTAAAGAGCTCTGAGAAAAAGAGGGGGTATCAGGAAGAAATGCCAGGGGAGGGTCAGTATGACTaGCTGTCCATAGCTGAGTCT +
Preference number: 4 (lower is better)
Translates to: CVLKSSEKKRGYQEEMPGEGQYD*LSIAES
Trigger: AGACTCAGCTATGGACAGCCAGTCATACTGACCCTC...CCCTGGCATTTCTTCCTGATACCCCCTCTTTTTCTCAGAGCTCTTTAGAACACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp ACACAGGTGGTCTTAACACATCAGTGCATCACATACACATATGTGCAAATACTGGGCAGATCCCTGTGTTaGGGTCACAGGTGCCATGCT +
Preference number: 4 (lower is better)
Translates to: TQVVLTHQCITYTYVQILGRSLC*GHRCHA
Trigger: AGCATGGCACCTGTGACCCCAACACAGGGATCTGCC...CAGTATTTGCACATATGTGTATGTGATGCACTGATGTGTTAAGACCACCTGTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp TGTGTTCTAAAGAGCTCTGAGAAAAAGAGGGGGTATCAGGAAGAAATGCCAGGGTGGCCAGTCTTGGGGTaGCACTTATTCTCCAAGGAT +
Preference number: 4 (lower is better)
Translates to: CVLKSSEKKRGYQEEMPGWPVLG*HLFSKD
Trigger: ATCCTTGGAGAATAAGTGCCACCCCAAGACTGGCCA...CCCTGGCATTTCTTCCTGATACCCCCTCTTTTTCTCAGAGCTCTTTAGAACACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp CCAGTGCCTAGGCTCTGCTGTGTTCTAAAGAGCTCTGAGAAAAAGAGGGGGTATAATTGGTGGGTGTGCTaGATCCTTTCTGAAGACTTG +
Preference number: 4 (lower is better)
Translates to: PVPRLCCVLKSSEKKRGYNWWVC*ILSEDL
Trigger: CAAGTCTTCAGAAAGGATCCAGCACACCCACCAATT...ATACCCCCTCTTTTTCTCAGAGCTCTTTAGAACACAGCAGAGCCTAGGCACTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp ACACAGGTGGTCTTAACACATCAGTGCATCACATACACATATGTGCAAATACTGTGTCCCTGTGGCTTCTaGCAAGGATCTGGGCCTCTG +
Preference number: 4 (lower is better)
Translates to: TQVVLTHQCITYTYVQILCPCGF*QGSGPL
Trigger: CAGAGGCCCAGATCCTTGCCAGAAGCCACAGGGACA...CAGTATTTGCACATATGTGTATGTGATGCACTGATGTGTTAAGACCACCTGTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CCA 90 bp GGTGGTCTTAACACATCAGTGCATCACATACACATATGTGCAAATACTGGGGTGGCTGGCACAGTTCTCTaGCAGACTGCTCAGAATGGT +
Preference number: 4 (lower is better)
Translates to: GGLNTSVHHIHICANTGVAGTVL*QTAQNG
Trigger: ACCATTCTGAGCAGTCTGCCAGAGAACTGTGCCAGC...CACCCCAGTATTTGCACATATGTGTATGTGATGCACTGATGTGTTAAGACCACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR GCA 90 bp TACACACTGAGGACTACATACAGGGTCATCTGTGGAGGTGTGAGCATGTATTCAAGTTCTCTGGCAGACTaGTCAGAATGGTCTCCAAGT +
Preference number: 4 (lower is better)
Translates to: YTLRTTYRVICGGVSMYSSSLAD*SEWSPS
Trigger: ACTTGGAGACCATTCTGAGCAGTCTGCCAGAGAACT...TGAATACATGCTCACACCTCCACAGATGACCCTGTATGTAGTCCTCAGTGTGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS CCA 90 bp GCCCCCACGTGTGGACAGAAGTCCTCCGGGGGCCGTCCGCACGTGTaGGAGGCCTCGGCGCGTCGGCCGAACGCCGCGTTCTCGAACTCA +
Preference number: 5 (lower is better)
Translates to: APTCGQKSSGGRPHV*EASARRPNAAFSNS
Trigger: TGAGTTCGAGAACGCGGCGTTCGGCCGACGCGCCGAGGCCTCCCACACGTGCGGACGGCCCCCGGAGGACTTCTGTCCACACGTGGGGGC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS GCA 90 bp GCGTCGGCCGAACGCCGCGTTCTCGAACTCAGGCAGACAGCGCTGTaGGCGTCCCACACCGTCGTAGCAAGAGCCCATGTCCGCGCCTGC +
Preference number: 5 (lower is better)
Translates to: ASAERRVLELRQTAL*ASHTVVARAHVRAC
Trigger: GCAGGCGCGGACATGGGCTCTTGCTACGACGGTGTGGGACGCGCACAGCGCTGTCTGCCTGAGTTCGAGAACGCGGCGTTCGGCCGACGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS GCA 90 bp GCCCACTGCAGTTGCAGGGCAGACACTCGTTGGCATCCTCGGCGGTaGCTCGGGCCCACGGACGGTCCTGGAAGAAGGGCAGACAACGCT +
Preference number: 5 (lower is better)
Translates to: AHCSCRADTRWHPRR*LGPTDGPGRRADNA
Trigger: AGCGTTGTCTGCCCTTCTTCCAGGACCGTCCGTGGGCCCGAGGCACCGCCGAGGATGCCAACGAGTGTCTGCCCTGCAACTGCAGTGGGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CCA 90 bp GAGAGGCCCGACGGAGTGTGGCCTGGGTCTGGCTGGCGAGTCGGCTaGCATGACGGTAGCCCTGCTTGCCTTCCCTCAGCAAAGCTCTGG +
Preference number: 5 (lower is better)
Translates to: ERPDGVWPGSGWRVG*HDGSPACLPSAKLW
Trigger: CCAGAGCTTTGCTGAGGGAAGGCAAGCAGGGCTACCGTCATGCCAGCCGACTCGCCAGCCAGACCCAGGCCACACTCCGTCGGGCCTCTC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS TCA 90 bp ATGGGCTCTGCCACCAGGTGCTGTCATCGGGGCTGTGGAAGTCTGTaGGGTAGGAGGCGTCGTGGCGTCGTCCGGGGTCAGCATCGTCGC +
Preference number: 5 (lower is better)
Translates to: MGSATRCCHRGCGSL*GRRRRGVVRGQHRR
Trigger: GCGACGATGCTGACCCCGGACGACGCCACGACGCCTCCTACCTCACAGACTTCCACAGCCCCGATGACAGCACCTGGTGGCAGAGCCCAT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS GCA 90 bp TCCACCTGCAGGGCTCCCACAGACTGGCCCACCTCGGGCTCCTTCTaGTCCAGCTTCTGCTCCAGGGCCTTCACTTTCCAGCTCAGGCCC +
Preference number: 5 (lower is better)
Translates to: STCRAPTDWPTSGSF*SSFCSRAFTFQLRP
Trigger: GGGCCTGAGCTGGAAAGTGAAGGCCCTGGAGCAGAAGCTGGAGCAGAAGGAGCCCGAGGTGGGCCAGTCTGTGGGAGCCCTGCAGGTGGA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS-3UTR CAA 90 bp CAGGCAGACCTGGGACACCTACAGGGAGTGGACAGGAAACGGCAGGGTGGGGAGCTGCAGGGAGCACATTaGTCCACGGGCCTTGTGGCC +
Preference number: 5 (lower is better)
Translates to: QADLGHLQGVDRKRQGGELQGAH*STGLVA
Trigger: GGCCACAAGGCCCGTGGACAAATGTGCTCCCTGCAG...CTCCCCACCCTGCCGTTTCCTGTCCACTCCCTGTAGGTGTCCCAGGTCTGCCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS TCA 90 bp GCCGGCGACATTGCAGGCACAGGGTCTGCAGCCGCCCTCACTGAGTaGGTGGAATCCAGGCAGGCAGCGATCACACTTCCAGCCTGTCAC +
Preference number: 5 (lower is better)
Translates to: AGDIAGTGSAAALTE*VESRQAAITLPACH
Trigger: GTGACAGGCTGGAAGTGTGATCGCTGCCTGCCTGGATTCCACTCACTCAGTGAGGGCGGCTGCAGACCCTGTGCCTGCAATGTCGCCGGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS TCA 90 bp AGCTGCCGGCGACATTGCAGGCACAGGGTCTGCAGCCGCCCTCACTaGGTGAGTGGAATCCAGGCAGGCAGCGATCACACTTCCAGCCTG +
Preference number: 5 (lower is better)
Translates to: SCRRHCRHRVCSRPH*VSGIQAGSDHTSSL
Trigger: CAGGCTGGAAGTGTGATCGCTGCCTGCCTGGATTCCACTCACTCAGTGAGGGCGGCTGCAGACCCTGTGCCTGCAATGTCGCCGGCAGCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS TCA 90 bp GAGGCTGGAGGGGCAAGCTCACGCTGGGGCCAGGCCGATGTGAGCTaGACTTCACACAAGAGCACTTGGCCAGAATGGCCCGGTCCTTGG +
Preference number: 5 (lower is better)
Translates to: EAGGASSRWGQADVS*TSHKSTWPEWPGPW
Trigger: CCAAGGACCGGGCCATTCTGGCCAAGTGCTCTTGTGTGAAGTTCAGCTCACATCGGCCTGGCCCCAGCGTGAGCTTGCCCCTCCAGCCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS GCA 90 bp TCCTCCCCTCCTCGCAGGCCCAGGAGGAGCCCACTCTGGCTCCATTaGAGAGGACGCTTGGACACTCCCATGCTTCTGATCTGCCAGCCA +
Preference number: 5 (lower is better)
Translates to: SSPPRRPRRSPLWLH*RGRLDTPMLLICQP
Trigger: TGGCTGGCAGATCAGAAGCATGGGAGTGTCCAAGCGTCCTCTGCAATGGAGCCAGAGTGGGCTCCTCCTGGGCCTGCGAGGAGGGGAGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS GCA 90 bp TTTGGGCAGCGCCTCTGCCACAGCTATGCCCAGGGCAGTCTGAGCTaGCTGCACCTCCTGGTACCTGTCCTCCAGTTCCTGCTGGGCTTC +
Preference number: 5 (lower is better)
Translates to: FGQRLCHSYAQGSLS*LHLLVPVLQFLLGF
Trigger: GAAGCCCAGCAGGAACTGGAGGACAGGTACCAGGAGGTGCAGGCAGCTCAGACTGCCCTGGGCATAGCTGTGGCAGAGGCGCTGCCCAAA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CCA 90 bp CCCTCAGGTCACAGCTGCAGGGAGCACATTTGTCCACGGGCCTTGTaGCCACGGCACTCCCGTAGAAACCCTCCCGACAGTGCTCGCAGT +
Preference number: 5 (lower is better)
Translates to: PSGHSCREHICPRAL*PRHSRRNPPDSARS
Trigger: ACTGCGAGCACTGTCGGGAGGGTTTCTACGGGAGTGCCGTGGCCACAAGGCCCGTGGACAAATGTGCTCCCTGCAGCTGTGACCTGAGGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS TCA 90 bp GAGGGCCTCAGAGACAGAGCCAAGCCTGCTCCCTCCAGTCTCAGCTaGATAGGAGGTGGGGAGCCTCCAGGGGGTACTTGGAGGGTCAGT +
Preference number: 5 (lower is better)
Translates to: EGLRDRAKPAPSSLS*IGGGEPPGGTWRVS
Trigger: ACTGACCCTCCAAGTACCCCCTGGAGGCTCCCCACCTCCTATTCAGCTGAGACTGGAGGGAGCAGGCTTGGCTCTGTCTCTGAGGCCCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS TCA 90 bp CCCACAAAGCCGGGCCGGCACACACAGGTGCTGTTCTCATGGCACTaGGATGAGGCAGCACCCAATGGGGAGCACCTACAGTCTCGGCAG +
Preference number: 5 (lower is better)
Translates to: PTKPGRHTQVLFSWH*DEAAPNGEHLQSRQ
Trigger: CTGCCGAGACTGTAGGTGCTCCCCATTGGGTGCTGCCTCATCTCAGTGCCATGAGAACAGCACCTGTGTGTGCCGGCCCGGCTTTGTGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CCA 90 bp GACGGTCCTGGAAGAAGGGCAGACAACGCTCGCAGTCCACTCCTGTaGTGTTGTGCTGACAGCGGCAAGCCAGCTGACCAGCCGCATTGG +
Preference number: 5 (lower is better)
Translates to: DGPGRRADNARSPLL*CCADSGKPADQPHW
Trigger: CCAATGCGGCTGGTCAGCTGGCTTGCCGCTGTCAGCACAACACCACAGGAGTGGACTGCGAGCGTTGTCTGCCCTTCTTCCAGGACCGTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CCA 90 bp GCTGAGAGTTCCTCCCCTCCTCGCAGGCCCAGGAGGAGCCCACTCTaGCTCCATTGCAGAGGACGCTTGGACACTCCCATGCTTCTGATC +
Preference number: 5 (lower is better)
Translates to: AESSSPPRRPRRSPL*LHCRGRLDTPMLLI
Trigger: GATCAGAAGCATGGGAGTGTCCAAGCGTCCTCTGCAATGGAGCCAGAGTGGGCTCCTCCTGGGCCTGCGAGGAGGGGAGGAACTCTCAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CCA 90 bp GCTGAACTCGTCTTGGCTGCCTGGTGTCCTGAGGGCTGGGTAGACTaGAGGGCCTCAGAGACAGAGCCAAGCCTGCTCCCTCCAGTCTCA +
Preference number: 5 (lower is better)
Translates to: AELVLAAWCPEGWVD*RASETEPSLLPPVS
Trigger: TGAGACTGGAGGGAGCAGGCTTGGCTCTGTCTCTGAGGCCCTCCAGTCTACCCAGCCCTCAGGACACCAGGCAGCCAAGACGAGTTCAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CCA 90 bp GGCCCGGTCCTTGGCCACTGGTCCAGATGCTCAGAGCAGTCAGATTaGAAAGCAGGCGCTGGAAGTGGAAGGTGGGCAGTGGGGACTCTG +
Preference number: 5 (lower is better)
Translates to: GPVLGHWSRCSEQSD*KAGAGSGRWAVGTL
Trigger: CAGAGTCCCCACTGCCCACCTTCCACTTCCAGCGCCTGCTTTCCAATCTGACTGCTCTGAGCATCTGGACCAGTGGCCAAGGACCGGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS TCA 90 bp AAAGCCGGGCCGGCACACACAGGTGCTGTTCTCATGGCACTGAGATaGGGCAGCACCCAATGGGGAGCACCTACAGTCTCGGCAGCCCTT +
Preference number: 5 (lower is better)
Translates to: KAGPAHTGAVLMALR*GSTQWGAPTVSAAL
Trigger: AAGGGCTGCCGAGACTGTAGGTGCTCCCCATTGGGTGCTGCCTCATCTCAGTGCCATGAGAACAGCACCTGTGTGTGCCGGCCCGGCTTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS TCA 90 bp AGAGGTCACCTGTTTAGCTTCCTCCAGCTCCTGCTTGTGTGCTTCTaGGGTCAGCAGCAGGCGAGAGGCCCGACGGAGTGTGGCCTGGGT +
Preference number: 5 (lower is better)
Translates to: RGHLFSFLQLLLVCF*GQQQARGPTECGLG
Trigger: ACCCAGGCCACACTCCGTCGGGCCTCTCGCCTGCTGCTGACCTCAGAAGCACACAAGCAGGAGCTGGAGGAAGCTAAACAGGTGACCTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS GCA 90 bp CAGTTGTGTGGTCACGGCACCGCTGACAGTGCCCACCATGGCCTGTaGTCCGATAGAGCTCCCTGTCAAACGTGCACTCCTCAGAGTGCC +
Preference number: 5 (lower is better)
Translates to: QLCGHGTADSAHHGL*SDRAPCQTCTPQSA
Trigger: GGCACTCTGAGGAGTGCACGTTTGACAGGGAGCTCTATCGGAGCACAGGCCATGGTGGGCACTGTCAGCGGTGCCGTGACCACACAACTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS GCA 90 bp GCTCCAGCCTGGGCACAGTGTACATGCCCTCTCAGCACCTGCAACTaGTCCCAAGTGGCCTTCACAGAATCCTCCAGGCCCACCATCTGC +
Preference number: 5 (lower is better)
Translates to: APAWAQCTCPLSTCN*SQVAFTESSRPTIC
Trigger: GCAGATGGTGGGCCTGGAGGATTCTGTGAAGGCCACTTGGGAGCAGTTGCAGGTGCTGAGAGGGCATGTACACTGTGCCCAGGCTGGAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS GCA 90 bp ACAGTGCTCAGCCCAGAGGTCACCTGTTTAGCTTCCTCCAGCTCCTaGTTGTGTGCTTCTGAGGTCAGCAGCAGGCGAGAGGCCCGACGG +
Preference number: 5 (lower is better)
Translates to: TVLSPEVTCLASSSS*LCASEVSSRREARR
Trigger: CCGTCGGGCCTCTCGCCTGCTGCTGACCTCAGAAGCACACAAGCAGGAGCTGGAGGAAGCTAAACAGGTGACCTCTGGGCTGAGCACTGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CCA 90 bp CTGATCTGCCAGCCACCAGCTCCATGGCGGAAGTCTGAGCGGATGTaGTGTTCCTGGAACCCGGCAGCAGGAGAACACACCTTGGAGTGG +
Preference number: 5 (lower is better)
Translates to: LICQPPAPWRKSERM*CSWNPAAGEHTLEW
Trigger: CCACTCCAAGGTGTGTTCTCCTGCTGCCGGGTTCCAGGAACACCACATCCGCTCAGACTTCCGCCATGGAGCTGGTGGCTGGCAGATCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS-3UTR CAA 90 bp ACAGGCAGACCTGGGACACCTACAGGGAGTGGACAGGAAACGGCAGGGTGGGGAGGACACTGGCCAGTCTaGGGGTGGCACTTATTCTCC +
Preference number: 5 (lower is better)
Translates to: TGRPGTPTGSGQETAGWGGHWPV*GWHLFS
Trigger: GGAGAATAAGTGCCACCCCAAGACTGGCCAGTGTCC...TCCCCACCCTGCCGTTTCCTGTCCACTCCCTGTAGGTGTCCCAGGTCTGCCTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CAA 90 bp CAGGCAGACCTGGGACACCTACAGGGAGTGGACAGGAAACGGCAGGGTGGGGAGAACCTGGCCTTCAGCTaGGCTGCCTCTTCCTTCACT +
Preference number: 5 (lower is better)
Translates to: QADLGHLQGVDRKRQGGENLAFS*AASSFT
Trigger: AGTGAAGGAAGAGGCAGCCAAGCTGAAGGCCAGGTT...CTCCCCACCCTGCCGTTTCCTGTCCACTCCCTGTAGGTGTCCCAGGTCTGCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS TCA 90 bp GCAGACACACTGGCCAGTCACAGGGTTGCAGGTCTTCTCACTGACTaGGCCCCTCAGGTCACAGCTGCAGGGAGCACATTTGTCCACGGG +
Preference number: 5 (lower is better)
Translates to: ADTLASHRVAGLLTD*APQVTAAGSTFVHG
Trigger: CCCGTGGACAAATGTGCTCCCTGCAGCTGTGACCTGAGGGGCTCAGTCAGTGAGAAGACCTGCAACCCTGTGACTGGCCAGTGTGTCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS TCA 90 bp GACTGCAATGTCTCCTCCAGCTCTGCCAGCTGGATGCAGGTCTTCTaGGCTCCAGCCTGGGCACAGTGTACATGCCCTCTCAGCACCTGC +
Preference number: 5 (lower is better)
Translates to: DCNVSSSSASWMQVF*APAWAQCTCPLSTC
Trigger: GCAGGTGCTGAGAGGGCATGTACACTGTGCCCAGGCTGGAGCTCAGAAGACCTGCATCCAGCTGGCAGAGCTGGAGGAGACATTGCAGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS GCA 90 bp AGTGCCCACCATGGCCTGTGCTCCGATAGAGCTCCCTGTCAAACGTaGACTCCTCAGAGTGCCCACTGCAGTTGCAGGGCAGACACTCGT +
Preference number: 5 (lower is better)
Translates to: SAHHGLCSDRAPCQT*TPQSAHCSCRADTR
Trigger: ACGAGTGTCTGCCCTGCAACTGCAGTGGGCACTCTGAGGAGTGCACGTTTGACAGGGAGCTCTATCGGAGCACAGGCCATGGTGGGCACT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS GCA 90 bp AATCATCAGCACGGCCTGAGAAGGCGTTACCGTAGAAACCTGGCATaGACCGCTCACAGGATGGACCCTCGGTGTGGTGGCCACACAGGC +
Preference number: 5 (lower is better)
Translates to: NHQHGLRRRYRRNLA*TAHRMDPRCGGHTG
Trigger: GCCTGTGTGGCCACCACACCGAGGGTCCATCCTGTGAGCGGTGCATGCCAGGTTTCTACGGTAACGCCTTCTCAGGCCGTGCTGATGATT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS GCA 90 bp CCTCCTCTGAGGACTGCAATGTCTCCTCCAGCTCTGCCAGCTGGATaGAGGTCTTCTGAGCTCCAGCCTGGGCACAGTGTACATGCCCTC +
Preference number: 5 (lower is better)
Translates to: PPLRTAMSPPALPAG*RSSELQPGHSVHAL
Trigger: GAGGGCATGTACACTGTGCCCAGGCTGGAGCTCAGAAGACCTGCATCCAGCTGGCAGAGCTGGAGGAGACATTGCAGTCCTCAGAGGAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CCA 90 bp CCTGTCACTGTGGGCTTGCAGGGACAGACGCCTGAGTTGTCACACTaGAGACTCAGAGAGCCTGCTGGGTGGCAGTCACAGGGTTGGCAT +
Preference number: 5 (lower is better)
Translates to: PVTVGLQGQTPELSH*RLREPAGWQSQGWH
Trigger: ATGCCAACCCTGTGACTGCCACCCAGCAGGCTCTCTGAGTCTCCAGTGTGACAACTCAGGCGTCTGTCCCTGCAAGCCCACAGTGACAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CCA 90 bp AGACAGAGCCAAGCCTGCTCCCTCCAGTCTCAGCTGAATAGGAGGTaGGGAGCCTCCAGGGGGTACTTGGAGGGTCAGTATGACTGGCTG +
Preference number: 5 (lower is better)
Translates to: RQSQACSLQSQLNRR*GASRGYLEGQYDWL
Trigger: CAGCCAGTCATACTGACCCTCCAAGTACCCCCTGGAGGCTCCCCACCTCCTATTCAGCTGAGACTGGAGGGAGCAGGCTTGGCTCTGTCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CCA 90 bp GGGCACAGTGTACATGCCCTCTCAGCACCTGCAACTGCTCCCAAGTaGCCTTCACAGAATCCTCCAGGCCCACCATCTGCTGCAGGAAGG +
Preference number: 5 (lower is better)
Translates to: GHSVHALSAPATAPK*PSQNPPGPPSAAGR
Trigger: CCTTCCTGCAGCAGATGGTGGGCCTGGAGGATTCTGTGAAGGCCACTTGGGAGCAGTTGCAGGTGCTGAGAGGGCATGTACACTGTGCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS-3UTR CAA 90 bp CATACGACAGGCAGACCTGGGACACCTACAGGGAGTGGACAGGAAACGGCAGGGCACTCTCTGGGATGGTaGCACAGGCTGATTGGCCAG +
Preference number: 5 (lower is better)
Translates to: HTTGRPGTPTGSGQETAGHSLGW*HRLIGQ
Trigger: CTGGCCAATCAGCCTGTGCAACCATCCCAGAGAGTG...CCCTGCCGTTTCCTGTCCACTCCCTGTAGGTGTCCCAGGTCTGCCTGTCGTATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CAA 90 bp TTCCTCTGGGACCTGGGGAAGGGATTGGGCTTGCAAAGGTGGCTGTTATCCCAGATTTGTCCACGGGCCTaGTGGCCACGGCACTCCCGT +
Preference number: 5 (lower is better)
Translates to: FLWDLGKGLGLQRWLLSQICPRA*WPRHSR
Trigger: ACGGGAGTGCCGTGGCCACAAGGCCCGTGGACAAAT...CTGGGATAACAGCCACCTTTGCAAGCCCAATCCCTTCCCCAGGTCCCAGAGGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS TCA 90 bp ATCACACTTCCAGCCTGTCACTGTGGGCTTGCAGGGACAGACGCCTaGGTTGTCACACTGGAGACTCAGAGAGCCTGCTGGGTGGCAGTC +
Preference number: 5 (lower is better)
Translates to: ITLPACHCGLAGTDA*VVTLETQRACWVAV
Trigger: GACTGCCACCCAGCAGGCTCTCTGAGTCTCCAGTGTGACAACTCAGGCGTCTGTCCCTGCAAGCCCACAGTGACAGGCTGGAAGTGTGAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS TCA 90 bp CTTGGTGGCCGTGTCCCTGTGGCTTCTGGCAAGGATCTGGGCCTCTaGTGCCAGGTGACTCCAATTGGTGGGTGTGCTGGATCCTTTCTG +
Preference number: 5 (lower is better)
Translates to: LGGRVPVASGKDLGL*CQVTPIGGCAGSFL
Trigger: CAGAAAGGATCCAGCACACCCACCAATTGGAGTCACCTGGCATCAGAGGCCCAGATCCTTGCCAGAAGCCACAGGGACACGGCCACCAAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS GCA 90 bp AGAGCACTTGGCCAGAATGGCCCGGTCCTTGGCCACTGGTCCAGATaGTCAGAGCAGTCAGATTGGAAAGCAGGCGCTGGAAGTGGAAGG +
Preference number: 5 (lower is better)
Translates to: RALGQNGPVLGHWSR*SEQSDWKAGAGSGR
Trigger: CCTTCCACTTCCAGCGCCTGCTTTCCAATCTGACTGCTCTGAGCATCTGGACCAGTGGCCAAGGACCGGGCCATTCTGGCCAAGTGCTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS GCA 90 bp CGCAGCTCTCGCATCGTCGTCCTCTCTGACCAGGAGGGCAGTGTGTaGACACCACATCTCCACTCTCTGGGATGGTTGCACAGGCTGATT +
Preference number: 5 (lower is better)
Translates to: RSSRIVVLSDQEGSV*TPHLHSLGWLHRLI
Trigger: AATCAGCCTGTGCAACCATCCCAGAGAGTGGAGATGTGGTGTGCACACACTGCCCTCCTGGTCAGAGAGGACGACGATGCGAGAGCTGCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CCA 90 bp CTGTGGTGTTGTGCTGACAGCGGCAAGCCAGCTGACCAGCCGCATTaGGTTCGCATTCACTGGCGTGACCATTGCATTTGCACCTGCCAC +
Preference number: 5 (lower is better)
Translates to: LWCCADSGKPADQPH*VRIHWRDHCICTCH
Trigger: GTGGCAGGTGCAAATGCAATGGTCACGCCAGTGAATGCGAACCCAATGCGGCTGGTCAGCTGGCTTGCCGCTGTCAGCACAACACCACAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CCA 90 bp CTTCGGGGACCATCTGTAGTAGTTCTTCTCACAGCGCTCACAGTGTaGCCCAGTTGTGTGGTCACGGCACCGCTGACAGTGCCCACCATG +
Preference number: 5 (lower is better)
Translates to: LRGPSVVVLLTALTV*PSCVVTAPLTVPTM
Trigger: CATGGTGGGCACTGTCAGCGGTGCCGTGACCACACAACTGGGCCACACTGTGAGCGCTGTGAGAAGAACTACTACAGATGGTCCCCGAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CCA 90 bp AAGTCTCCTGCAAGAGGAACTGGAGCTGAACTCGTCTTGGCTGCCTaGTGTCCTGAGGGCTGGGTAGACTGGAGGGCCTCAGAGACAGAG +
Preference number: 5 (lower is better)
Translates to: KSPARGTGAELVLAA*CPEGWVDWRASETE
Trigger: CTCTGTCTCTGAGGCCCTCCAGTCTACCCAGCCCTCAGGACACCAGGCAGCCAAGACGAGTTCAGCTCCAGTTCCTCTTGCAGGAGACTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS-3UTR CAA 90 bp TTCCTCTGGGACCTGGGGAAGGGATTGGGCTTGCAAAGGTGGCTGTTATCCCAGAGGCAGATCCCTGTGTaGGGGTCACAGGTGCCATGC +
Preference number: 5 (lower is better)
Translates to: FLWDLGKGLGLQRWLLSQRQIPV*GSQVPC
Trigger: GCATGGCACCTGTGACCCCAACACAGGGATCTGCCT...CTGGGATAACAGCCACCTTTGCAAGCCCAATCCCTTCCCCAGGTCCCAGAGGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CAA 90 bp CATACGACAGGCAGACCTGGGACACCTACAGGGAGTGGACAGGAAACGGCAGGGTGGCCAGTCACAGGGTaGCAGGTCTTCTCACTGACT +
Preference number: 5 (lower is better)
Translates to: HTTGRPGTPTGSGQETAGWPVTG*QVFSLT
Trigger: AGTCAGTGAGAAGACCTGCAACCCTGTGACTGGCCA...CCCTGCCGTTTCCTGTCCACTCCCTGTAGGTGTCCCAGGTCTGCCTGTCGTATG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CAA 90 bp CCATCTTACCTTGCCCTGTGGCTTTGCAGGCCCACGTGGCCTCAGGTGACACTTTCCGCGAGGAAGAAATaGTCCTGGCAGCGGTCGCAT +
Preference number: 5 (lower is better)
Translates to: PSYLALWLCRPTWPQVTLSARKK*SWQRSH
Trigger: ATGCGACCGCTGCCAGGACAATTTCTTCCTCGCGGA...AAGTGTCACCTGAGGCCACGTGGGCCTGCAAAGCCACAGGGCAAGGTAAGATGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS TCA 90 bp TGCAGCTCCTGTCGAGCAGACTCTTCCTCCAGCTGCCTCAGTTTGTaGTGCAGGGCTCCGTGGGAATCCAGCTGCAGCCTCAAGCTTTCT +
Preference number: 5 (lower is better)
Translates to: CSSCRADSSSSCLSL*CRAPWESSCSLKLS
Trigger: AGAAAGCTTGAGGCTGCAGCTGGATTCCCACGGAGCCCTGCATCACAAACTGAGGCAGCTGGAGGAAGAGTCTGCTCGACAGGAGCTGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS CCA 90 bp ATTGGTAGGGCTCCCAGGGGCCACTGGCGTACGTGCGCTTGTAGATaGCAAAACTCTCAGGGCGACTGGTGTGGAACTTCAGCCTCACAT +
Preference number: 5 (lower is better)
Translates to: IGRAPRGHWRTCACR*QNSQGDWCGTSASH
Trigger: ATGTGAGGCTGAAGTTCCACACCAGTCGCCCTGAGAGTTTTGCCATCTACAAGCGCACGTACGCCAGTGGCCCCTGGGAGCCCTACCAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CCA 90 bp CTGGAGACTCAGAGAGCCTGCTGGGTGGCAGTCACAGGGTTGGCATaGTGTCTTCGGGGACCATCTGTAGTAGTTCTTCTCACAGCGCTC +
Preference number: 5 (lower is better)
Translates to: LETQRACWVAVTGLA*CLRGPSVVVLLTAL
Trigger: GAGCGCTGTGAGAAGAACTACTACAGATGGTCCCCGAAGACACCATGCCAACCCTGTGACTGCCACCCAGCAGGCTCTCTGAGTCTCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CCA 90 bp TTGATGGAGAAGCCAAAGAAACCTAGCTGGCATCTGTCACAGGCTTaGCCAGTGACACCAGGTCGGCAGGGACACTGGCCAGTCTTGGGG +
Preference number: 5 (lower is better)
Translates to: LMEKPKKPSWHLSQA*PVTPGRQGHWPVLG
Trigger: CCCCAAGACTGGCCAGTGTCCCTGCCGACCTGGTGTCACTGGCCAAGCCTGTGACAGATGCCAGCTAGGTTTCTTTGGCTTCTCCATCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CCA 90 bp CTACAGTCTCGGCAGCCCTTGATGGAGAAGCCAAAGAAACCTAGCTaGCATCTGTCACAGGCTTGGCCAGTGACACCAGGTCGGCAGGGA +
Preference number: 5 (lower is better)
Translates to: LQSRQPLMEKPKKPS*HLSQAWPVTPGRQG
Trigger: TCCCTGCCGACCTGGTGTCACTGGCCAAGCCTGTGACAGATGCCAGCTAGGTTTCTTTGGCTTCTCCATCAAGGGCTGCCGAGACTGTAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CCA 90 bp AGCTTCTGCTCCAGGGCCTTCACTTTCCAGCTCAGGCCCCTGGCTTaGAAGTTCATTGCTTCAGGGGTGACCAGCAAGCCTAGATGTGGG +
Preference number: 5 (lower is better)
Translates to: SFCSRAFTFQLRPLA*KFIASGVTSKPRCG
Trigger: CCCACATCTAGGCTTGCTGGTCACCCCTGAAGCAATGAACTTCCAAGCCAGGGGCCTGAGCTGGAAAGTGAAGGCCCTGGAGCAGAAGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS-3UTR CAA 90 bp CAAACAAGCATTCACGTGAACATACGACAGGCAGACCTGGGACACCTACAGGGACAGGGCAGACACTCGTaGGCATCCTCGGCGGTGCCT +
Preference number: 5 (lower is better)
Translates to: QTSIHVNIRQADLGHLQGQGRHS*ASSAVP
Trigger: AGGCACCGCCGAGGATGCCAACGAGTGTCTGCCCTG...TCCCTGTAGGTGTCCCAGGTCTGCCTGTCGTATGTTCACGTGAATGCTTGTTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS TCA 90 bp TTGTGCTTGTCAGCGCGGATCTCAGCAAGGTCGTCCTCAAAGCTCTaGATCTGCAGCTCCTGTCGAGCAGACTCTTCCTCCAGCTGCCTC +
Preference number: 5 (lower is better)
Translates to: LCLSARISARSSSKL*ICSSCRADSSSSCL
Trigger: GAGGCAGCTGGAGGAAGAGTCTGCTCGACAGGAGCTGCAGATTCAGAGCTTTGAGGACGACCTTGCTGAGATCCGCGCTGACAAGCACAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS GCA 90 bp GCTGAGGAAGCCCGTGTGAAGGCAGCTGTGGTCTTATTGCGTAGCTaGATAAAGGGCTCCATCTTCTCCAAGGCTCTTCCAGCCTCCACC +
Preference number: 5 (lower is better)
Translates to: AEEARVKAAVVLLRS*IKGSIFSKALPAST
Trigger: GGTGGAGGCTGGAAGAGCCTTGGAGAAGATGGAGCCCTTTATGCAGCTACGCAATAAGACCACAGCTGCCTTCACACGGGCTTCCTCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS GCA 90 bp TCAGCTAGCAGGGTCTCTGCTCCTATGACGGTCACCTTGGCAGCTTaGACAGCTGAGGAAGCCCGTGTGAAGGCAGCTGTGGTCTTATTG +
Preference number: 5 (lower is better)
Translates to: SASRVSAPMTVTLAA*TAEEARVKAAVVLL
Trigger: CAATAAGACCACAGCTGCCTTCACACGGGCTTCCTCAGCTGTGCAAGCTGCCAAGGTGACCGTCATAGGAGCAGAGACCCTGCTAGCTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS GCA 90 bp AGGAGCCTGGTCCTGATGCTGCCTGCTTTCTTCTTCAGCGCTGCCTaGTCCTTGGGTAGAGGAGACCTCAGCTTCATTCCCTCTAGGTCA +
Preference number: 5 (lower is better)
Translates to: RSLVLMLPAFFFSAA*SLGRGDLSFIPSRS
Trigger: TGACCTAGAGGGAATGAAGCTGAGGTCTCCTCTACCCAAGGAGCAGGCAGCGCTGAAGAAGAAAGCAGGCAGCATCAGGACCAGGCTCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CCA 90 bp TGGCCTTCAGCTTGGCTGCCTCTTCCTTCACTAGGGCATAGCAAGTaGGACACTCTTGGCAGCCTGTGTCGCCATCCGCGAGGAAGAAAT +
Preference number: 5 (lower is better)
Translates to: WPSAWLPLPSLGHSK*DTLGSLCRHPRGRN
Trigger: ATTTCTTCCTCGCGGATGGCGACACAGGCTGCCAAGAGTGTCCCACTTGCTATGCCCTAGTGAAGGAAGAGGCAGCCAAGCTGAAGGCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS-3UTR CAA 90 bp GGGTCCTTTATTTCCTCAGAATCACAATCAGTTCCTCTGGGACCTGGGGAAGGGCCTGTCACTGTGGGCTaGCAGGGACAGACGCCTGAG +
Preference number: 5 (lower is better)
Translates to: GSFISSESQSVPLGPGEGPVTVG*QGQTPE
Trigger: CTCAGGCGTCTGTCCCTGCAAGCCCACAGTGACAGG...CCCTTCCCCAGGTCCCAGAGGAACTGATTGTGATTCTGAGGAAATAAAGGACCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CAA 90 bp GCCTCAGGTGACACTTCCAGGAACCCTGTTAGAATCTGGGCACTGCTTGATCTGCCCACTCTGGCTCCATaGCAGAGGACGCTTGGACAC +
Preference number: 5 (lower is better)
Translates to: ASGDTSRNPVRIWALLDLPTLAP*QRTLGH
Trigger: GTGTCCAAGCGTCCTCTGCAATGGAGCCAGAGTGGG...CAGATCAAGCAGTGCCCAGATTCTAACAGGGTTCCTGGAAGTGTCACCTGAGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CAA 90 bp TGGCCTCAGGTGACACTTCCAGGAACCCTGTTAGAATCTGGGCACTGCTTGATCGCATCTGTCACAGGCTaGGCCAGTGACACCAGGTCG +
Preference number: 5 (lower is better)
Translates to: WPQVTLPGTLLESGHCLIASVTG*ASDTRS
Trigger: CGACCTGGTGTCACTGGCCAAGCCTGTGACAGATGC...GATCAAGCAGTGCCCAGATTCTAACAGGGTTCCTGGAAGTGTCACCTGAGGCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CAA 90 bp TTTAGAGAGTACACACTGAGGACTACATACAGGGTCATCTGTGGAGGTGTGAGCGTGGAGAAGGCCACGTaGCCCCCGTTCAAGGGGGAG +
Preference number: 5 (lower is better)
Translates to: FREYTLRTTYRVICGGVSVEKAT*PPFKGE
Trigger: CTCCCCCTTGAACGGGGGCAACGTGGCCTTCTCCAC...GCTCACACCTCCACAGATGACCCTGTATGTAGTCCTCAGTGTGTACTCTCTAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CAA 90 bp GCCTCAGGTGACACTTCCAGGAACCCTGTTAGAATCTGGGCACTGCTTGATCTGCTCCCAGGAACTTCTTaGGGGCTGAGAGTTCCTCCC +
Preference number: 5 (lower is better)
Translates to: ASGDTSRNPVRIWALLDLLPGTS*GLRVPP
Trigger: GGGAGGAACTCTCAGCCCCAAAGAAGTTCCTGGGAG...CAGATCAAGCAGTGCCCAGATTCTAACAGGGTTCCTGGAAGTGTCACCTGAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CAA 90 bp CAAACAAGCATTCACGTGAACATACGACAGGCAGACCTGGGACACCTACAGGGAGGAGCTGAACTCGTCTaGGCTGCCTGGTGTCCTGAG +
Preference number: 5 (lower is better)
Translates to: QTSIHVNIRQADLGHLQGGAELV*AAWCPE
Trigger: CTCAGGACACCAGGCAGCCAAGACGAGTTCAGCTCC...TCCCTGTAGGTGTCCCAGGTCTGCCTGTCGTATGTTCACGTGAATGCTTGTTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CAA 90 bp ACAGGCAGACCTGGGACACCTACAGGGAGTGGACAGGAAACGGCAGGGTGGGGAATCCTTTCTGAAGACTaGCCAGAAATGAGAGAGCTG +
Preference number: 5 (lower is better)
Translates to: TGRPGTPTGSGQETAGWGILSED*PEMREL
Trigger: CAGCTCTCTCATTTCTGGCAAGTCTTCAGAAAGGAT...TCCCCACCCTGCCGTTTCCTGTCCACTCCCTGTAGGTGTCCCAGGTCTGCCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS CCA 90 bp GGATCTGGGCCTCTGATGCCAGGTGACTCCAATTGGTGGGTGTGCTaGATCCTTTCTGAAGACTTGCCAGAAATGAGAGAGCTGAGGCTG +
Preference number: 5 (lower is better)
Translates to: GSGPLMPGDSNWWVC*ILSEDLPEMRELRL
Trigger: CAGCCTCAGCTCTCTCATTTCTGGCAAGTCTTCAGAAAGGATCCAGCACACCCACCAATTGGAGTCACCTGGCATCAGAGGCCCAGATCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CAA 90 bp TGTGGAATGTGCCCAAGCTCAGGACTGCCTCTCCACAGCTCTAGACTCTCATATCAGTTGCCCACAGCATaGAGATCCACGTTCCCGCTG +
Preference number: 5 (lower is better)
Translates to: CGMCPSSGLPLHSSRLSYQLPTA*RSTFPL
Trigger: CAGCGGGAACGTGGATCTCAATGCTGTGGGCAACTG...ATATGAGAGTCTAGAGCTGTGGAGAGGCAGTCCTGAGCTTGGGCACATTCCACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS GCA 90 bp CCGCATTGGGTTCGCATTCACTGGCGTGACCATTGCATTTGCACCTaGCACCCACAGAGAAGTCAGACACAGCGTAGTAGTAAGACTGGA +
Preference number: 5 (lower is better)
Translates to: PHWVRIHWRDHCICT*HPQRSQTQRSSKTG
Trigger: TCCAGTCTTACTACTACGCTGTGTCTGACTTCTCTGTGGGTGGCAGGTGCAAATGCAATGGTCACGCCAGTGAATGCGAACCCAATGCGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS GCA 90 bp CAAGGATCTGGGCCTCTGATGCCAGGTGACTCCAATTGGTGGGTGTaGTGGATCCTTTCTGAAGACTTGCCAGAAATGAGAGAGCTGAGG +
Preference number: 5 (lower is better)
Translates to: QGSGPLMPGDSNWWV*WILSEDLPEMRELR
Trigger: CCTCAGCTCTCTCATTTCTGGCAAGTCTTCAGAAAGGATCCAGCACACCCACCAATTGGAGTCACCTGGCATCAGAGGCCCAGATCCTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS CCA 90 bp GGCTTCTGGCAAGGATCTGGGCCTCTGATGCCAGGTGACTCCAATTaGTGGGTGTGCTGGATCCTTTCTGAAGACTTGCCAGAAATGAGA +
Preference number: 5 (lower is better)
Translates to: GFWQGSGPLMPGDSN*WVCWILSEDLPEMR
Trigger: TCTCATTTCTGGCAAGTCTTCAGAAAGGATCCAGCACACCCACCAATTGGAGTCACCTGGCATCAGAGGCCCAGATCCTTGCCAGAAGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CAA 90 bp CAGGAAAAGGGTCCTTTATTTCCTCAGAATCACAATCAGTTCCTCTGGGACCTGCACAGTGTGGCCCAGTaGTGTGGTCACGGCACCGCT +
Preference number: 5 (lower is better)
Translates to: QEKGPLFPQNHNQFLWDLHSVAQ*CGHGTA
Trigger: AGCGGTGCCGTGACCACACAACTGGGCCACACTGTG...CAGGTCCCAGAGGAACTGATTGTGATTCTGAGGAAATAAAGGACCCTTTTCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CAA 90 bp CAAACAAGCATTCACGTGAACATACGACAGGCAGACCTGGGACACCTACAGGGACTGCAGCCCACTGGATaGTGGGGCTGCAGGTTAAAT +
Preference number: 5 (lower is better)
Translates to: QTSIHVNIRQADLGHLQGLQPTG*WGCRLN
Trigger: ATTTAACCTGCAGCCCCACAATCCAGTGGGCTGCAG...TCCCTGTAGGTGTCCCAGGTCTGCCTGTCGTATGTTCACGTGAATGCTTGTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CAA 90 bp CCAGTGCCTAGGCTCTGCTGTGTTCTAAAGAGCTCTGAGAAAAAGAGGGGGTATAGTGCCTTTTCAGCTTaGGGCAGCGCCTCTGCCACA +
Preference number: 5 (lower is better)
Translates to: PVPRLCCVLKSSEKKRGYSAFSA*GSASAT
Trigger: TGTGGCAGAGGCGCTGCCCAAAGCTGAAAAGGCACT...ATACCCCCTCTTTTTCTCAGAGCTCTTTAGAACACAGCAGAGCCTAGGCACTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CAA 90 bp TCCTCAGAATCACAATCAGTTCCTCTGGGACCTGGGGAAGGGATTGGGCTTGCAATCCTCTCTGCCTGCTaGGTCTTCCTCTTTGTGTCC +
Preference number: 5 (lower is better)
Translates to: SSESQSVPLGPGEGIGLAILSAC*VFLFVS
Trigger: GGACACAAAGAGGAAGACCAAGCAGGCAGAGAGGAT...TGCAAGCCCAATCCCTTCCCCAGGTCCCAGAGGAACTGATTGTGATTCTGAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CAA 90 bp GGGTCCTTTATTTCCTCAGAATCACAATCAGTTCCTCTGGGACCTGGGGAAGGGAGCTCTGACAGGACCTaGGTGTCCTTCTCCAAGGAG +
Preference number: 5 (lower is better)
Translates to: GSFISSESQSVPLGPGEGSSDRT*VSFSKE
Trigger: CTCCTTGGAGAAGGACACCAAGGTCCTGTCAGAGCT...CCCTTCCCCAGGTCCCAGAGGAACTGATTGTGATTCTGAGGAAATAAAGGACCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS CCA 90 bp TTCTGGCAAGGATCTGGGCCTCTGATGCCAGGTGACTCCAATTGGTaGGTGTGCTGGATCCTTTCTGAAGACTTGCCAGAAATGAGAGAG +
Preference number: 5 (lower is better)
Translates to: FWQGSGPLMPGDSNW*VCWILSEDLPEMRE
Trigger: CTCTCTCATTTCTGGCAAGTCTTCAGAAAGGATCCAGCACACCCACCAATTGGAGTCACCTGGCATCAGAGGCCCAGATCCTTGCCAGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CAA 90 bp CAGGAAAAGGGTCCTTTATTTCCTCAGAATCACAATCAGTTCCTCTGGGACCTGGTGGCAGTCACAGGGTaGGCATGGTGTCTTCGGGGA +
Preference number: 5 (lower is better)
Translates to: QEKGPLFPQNHNQFLWDLVAVTG*AWCLRG
Trigger: TCCCCGAAGACACCATGCCAACCCTGTGACTGCCAC...CAGGTCCCAGAGGAACTGATTGTGATTCTGAGGAAATAAAGGACCCTTTTCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CAA 90 bp ACACAGGTGGTCTTAACACATCAGTGCATCACATACACATATGTGCAAATACTGGGTCTGAGCAGGGGCTaGGTGGACACCCAGGGACCC +
Preference number: 5 (lower is better)
Translates to: TQVVLTHQCITYTYVQILGLSRG*VDTQGP
Trigger: GGGTCCCTGGGTGTCCACCAAGCCCCTGCTCAGACC...CAGTATTTGCACATATGTGTATGTGATGCACTGATGTGTTAAGACCACCTGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CAA 90 bp TGTGTTCTAAAGAGCTCTGAGAAAAAGAGGGGGTATCAGGAAGAAATGCCAGGGGCTCAGGCCCCTGGCTaGGAAGTTCATTGCTTCAGG +
Preference number: 5 (lower is better)
Translates to: CVLKSSEKKRGYQEEMPGAQAPG*EVHCFR
Trigger: CCTGAAGCAATGAACTTCCAAGCCAGGGGCCTGAGC...CCCTGGCATTTCTTCCTGATACCCCCTCTTTTTCTCAGAGCTCTTTAGAACACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CAA 90 bp TTTAGAGAGTACACACTGAGGACTACATACAGGGTCATCTGTGGAGGTGTGAGCAGCACTCTGGGGTCCTaGAAGATGTCATCCCCAAAC +
Preference number: 5 (lower is better)
Translates to: FREYTLRTTYRVICGGVSSTLGS*KMSSPN
Trigger: GTTTGGGGATGACATCTTCAAGGACCCCAGAGTGCT...GCTCACACCTCCACAGATGACCCTGTATGTAGTCCTCAGTGTGTACTCTCTAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CAA 90 bp TGTGTTCTAAAGAGCTCTGAGAAAAAGAGGGGGTATCAGGAAGAAATGCCAGGGGGACAGACGCCTGAGTaGTCACACTGGAGACTCAGA +
Preference number: 5 (lower is better)
Translates to: CVLKSSEKKRGYQEEMPGGQTPE*SHWRLR
Trigger: TCTGAGTCTCCAGTGTGACAACTCAGGCGTCTGTCC...CCCTGGCATTTCTTCCTGATACCCCCTCTTTTTCTCAGAGCTCTTTAGAACACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CAA 90 bp TGTGTTCTAAAGAGCTCTGAGAAAAAGAGGGGGTATCAGGAAGAAATGCCAGGGCTCAGAGCAGTCAGATaGGAAAGCAGGCGCTGGAAG +
Preference number: 5 (lower is better)
Translates to: CVLKSSEKKRGYQEEMPGLRAVR*ESRRWK
Trigger: CTTCCAGCGCCTGCTTTCCAATCTGACTGCTCTGAG...CCCTGGCATTTCTTCCTGATACCCCCTCTTTTTCTCAGAGCTCTTTAGAACACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CAA 90 bp TTTAGAGAGTACACACTGAGGACTACATACAGGGTCATCTGTGGAGGTGTGAGCCAGTCTCGGCAGCCCTaGATGGAGAAGCCAAAGAAA +
Preference number: 5 (lower is better)
Translates to: FREYTLRTTYRVICGGVSQSRQP*MEKPKK
Trigger: TTTCTTTGGCTTCTCCATCAAGGGCTGCCGAGACTG...GCTCACACCTCCACAGATGACCCTGTATGTAGTCCTCAGTGTGTACTCTCTAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CAA 90 bp CAAACAAGCATTCACGTGAACATACGACAGGCAGACCTGGGACACCTACAGGGATCTTTGCTTTTCTTCTaGGTGCTGGAGGAGAGAGAG +
Preference number: 5 (lower is better)
Translates to: QTSIHVNIRQADLGHLQGSLLFF*VLEERE
Trigger: CTCTCTCTCCTCCAGCACCAAGAAGAAAAGCAAAGA...TCCCTGTAGGTGTCCCAGGTCTGCCTGTCGTATGTTCACGTGAATGCTTGTTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CAA 90 bp ACACAGGTGGTCTTAACACATCAGTGCATCACATACACATATGTGCAAATACTGCAGGTGCCATGCTGGTaGCAGGTGCAGGGAATGCAG +
Preference number: 5 (lower is better)
Translates to: TQVVLTHQCITYTYVQILQVPCW*QVQGMQ
Trigger: CTGCATTCCCTGCACCTGCAACCAGCATGGCACCTG...CAGTATTTGCACATATGTGTATGTGATGCACTGATGTGTTAAGACCACCTGTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CAA 90 bp TGTGTTCTAAAGAGCTCTGAGAAAAAGAGGGGGTATCAGGAAGAAATGCCAGGGTCATCCCCAAACGTGTaGAGCCGATCTAGAGAGATC +
Preference number: 5 (lower is better)
Translates to: CVLKSSEKKRGYQEEMPGSSPNV*SRSREI
Trigger: GATCTCTCTAGATCGGCTCAACACGTTTGGGGATGA...CCCTGGCATTTCTTCCTGATACCCCCTCTTTTTCTCAGAGCTCTTTAGAACACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS-3UTR CAA 90 bp ACACAGGTGGTCTTAACACATCAGTGCATCACATACACATATGTGCAAATACTGGCTTGGTCTTCCTCTTaGTGTCCTCCAGGAGCCTGG +
Preference number: 5 (lower is better)
Translates to: TQVVLTHQCITYTYVQILAWSSS*CPPGAW
Trigger: CCAGGCTCCTGGAGGACACAAAGAGGAAGACCAAGC...CAGTATTTGCACATATGTGTATGTGATGCACTGATGTGTTAAGACCACCTGTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS CCA 72 bp TGTGGACAGAAGTCCTCCGGGGGCCGTCCGCACGTGTaGGAGGCCTCGGCGCGTCGGCCGAACGCCGCGTTC +
Preference number: 6 (lower is better)
Translates to: CGQKSSGGRPHV*EASARRPNAAF
Trigger: GAACGCGGCGTTCGGCCGACGCGCCGAGGCCTCCCACACGTGCGGACGGCCCCCGGAGGACTTCTGTCCACA
74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS GCA 72 bp GACAGTTCCCACTGCGGGGGTCACAGGTGCCCAAGCTaGCGGCGACATTGCAGGCACAGGGTCTGCAGCCGC +
Preference number: 6 (lower is better)
Translates to: DSSHCGGHRCPS*RRHCRHRVCSR
Trigger: GCGGCTGCAGACCCTGTGCCTGCAATGTCGCCGGCAGCTTGGGCACCTGTGACCCCCGCAGTGGGAACTGTC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CCA 72 bp GCATCCTCGGCGGTGCCTCGGGCCCACGGACGGTCCTaGAAGAAGGGCAGACAACGCTCGCAGTCCACTCCT +
Preference number: 6 (lower is better)
Translates to: ASSAVPRAHGRS*KKGRQRSQSTP
Trigger: AGGAGTGGACTGCGAGCGTTGTCTGCCCTTCTTCCAGGACCGTCCGTGGGCCCGAGGCACCGCCGAGGATGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CCA 72 bp CAGAGTGCCCACTGCAGTTGCAGGGCAGACACTCGTTaGCATCCTCGGCGGTGCCTCGGGCCCACGGACGGT +
Preference number: 6 (lower is better)
Translates to: QSAHCSCRADTR*HPRRCLGPTDG
Trigger: ACCGTCCGTGGGCCCGAGGCACCGCCGAGGATGCCAACGAGTGTCTGCCCTGCAACTGCAGTGGGCACTCTG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CAA 72 bp TCAGAGTGCCCACTGCAGTTGCAGGGCAGACACTCGTaGGCATCCTCGGCGGTGCCTCGGGCCCACGGACGG +
Preference number: 6 (lower is better)
Translates to: SECPLQLQGRHS*ASSAVPRAHGR
Trigger: CCGTCCGTGGGCCCGAGGCACCGCCGAGGATGCCAACGAGTGTCTGCCCTGCAACTGCAGTGGGCACTCTGA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CAA 72 bp CTGCGGGGGTCACAGGTGCCCAAGCTGCCGGCGACATaGCAGGCACAGGGTCTGCAGCCGCCCTCACTGAGT +
Preference number: 6 (lower is better)
Translates to: LRGSQVPKLPAT*QAQGLQPPSLS
Trigger: ACTCAGTGAGGGCGGCTGCAGACCCTGTGCCTGCAATGTCGCCGGCAGCTTGGGCACCTGTGACCCCCGCAG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS TCA 72 bp GCCACCAGGTGCTGTCATCGGGGCTGTGGAAGTCTGTaGGGTAGGAGGCGTCGTGGCGTCGTCCGGGGTCAG +
Preference number: 6 (lower is better)
Translates to: ATRCCHRGCGSL*GRRRRGVVRGQ
Trigger: CTGACCCCGGACGACGCCACGACGCCTCCTACCTCACAGACTTCCACAGCCCCGATGACAGCACCTGGTGGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS GCA 72 bp AGTTGCAGGGCAGACACTCGTTGGCATCCTCGGCGGTaGCTCGGGCCCACGGACGGTCCTGGAAGAAGGGCA +
Preference number: 6 (lower is better)
Translates to: SCRADTRWHPRR*LGPTDGPGRRA
Trigger: TGCCCTTCTTCCAGGACCGTCCGTGGGCCCGAGGCACCGCCGAGGATGCCAACGAGTGTCTGCCCTGCAACT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CCA 72 bp GACGGAGTGTGGCCTGGGTCTGGCTGGCGAGTCGGCTaGCATGACGGTAGCCCTGCTTGCCTTCCCTCAGCA +
Preference number: 6 (lower is better)
Translates to: DGVWPGSGWRVG*HDGSPACLPSA
Trigger: TGCTGAGGGAAGGCAAGCAGGGCTACCGTCATGCCAGCCGACTCGCCAGCCAGACCCAGGCCACACTCCGTC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CCA 72 bp TCCTCCCCTCCTCGCAGGCCCAGGAGGAGCCCACTCTaGCTCCATTGCAGAGGACGCTTGGACACTCCCATG +
Preference number: 6 (lower is better)
Translates to: SSPPRRPRRSPL*LHCRGRLDTPM
Trigger: CATGGGAGTGTCCAAGCGTCCTCTGCAATGGAGCCAGAGTGGGCTCCTCCTGGGCCTGCGAGGAGGGGAGGA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CCA 72 bp TCCACGTTCCCGCTGCACTGGCATCGGCGGCAGGGCTaGGGAGCTCCAGAGAGCCCTAGAGGATCCCCAAAA +
Preference number: 6 (lower is better)
Translates to: STFPLHWHRRQG*GAPESPRGSPK
Trigger: TTTTGGGGATCCTCTAGGGCTCTCTGGAGCTCCCCAGCCCTGCCGCCGATGCCAGTGCAGCGGGAACGTGGA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CAA 90 bp AGCCCCTCAGGTCACAGCTGCAGGGAGCACATTTGTCCACGGGCCTaGTGGCCACGGCACTCCCGTAGAAACCCTCCCGACAGTGCTCGC +
Preference number: 6 (lower is better)
Translates to: SPSGHSCREHICPRA*WPRHSRRNPPDSAR
Trigger: GCGAGCACTGTCGGGAGGGTTTCTACGGGAGTGCCGTGGCCACAAGGCCCGTGGACAAATGTGCTCCCTGCAGCTGTGACCTGAGGGGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS TCA 72 bp AAGCTTTCTAGTGCCCGCTGGGTCTCGTTCAGGGTCTaGGCAGGGGCTTGGTGGACACCCAGGGACCCCAGC +
Preference number: 6 (lower is better)
Translates to: KLSSARWVSFRV*AGAWWTPRDPS
Trigger: GCTGGGGTCCCTGGGTGTCCACCAAGCCCCTGCTCAGACCCTGAACGAGACCCAGCGGGCACTAGAAAGCTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS GCA 72 bp GAACGCCGCGTTCTCGAACTCAGGCAGACAGCGCTGTaGGCGTCCCACACCGTCGTAGCAAGAGCCCATGTC +
Preference number: 6 (lower is better)
Translates to: ERRVLELRQTAL*ASHTVVARAHV
Trigger: GACATGGGCTCTTGCTACGACGGTGTGGGACGCGCACAGCGCTGTCTGCCTGAGTTCGAGAACGCGGCGTTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CCA 72 bp GTCTTGGCTGCCTGGTGTCCTGAGGGCTGGGTAGACTaGAGGGCCTCAGAGACAGAGCCAAGCCTGCTCCCT +
Preference number: 6 (lower is better)
Translates to: VLAAWCPEGWVD*RASETEPSLLP
Trigger: AGGGAGCAGGCTTGGCTCTGTCTCTGAGGCCCTCCAGTCTACCCAGCCCTCAGGACACCAGGCAGCCAAGAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CCA 72 bp GGCATGCACCGCTCACAGGATGGACCCTCGGTGTGGTaGCCACACAGGCAGATCCCTGTGTTGGGGTCACAG +
Preference number: 6 (lower is better)
Translates to: GMHRSQDGPSVW*PHRQIPVLGSQ
Trigger: CTGTGACCCCAACACAGGGATCTGCCTGTGTGGCCACCACACCGAGGGTCCATCCTGTGAGCGGTGCATGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CCA 72 bp CCTGGCATGCACCGCTCACAGGATGGACCCTCGGTGTaGTGGCCACACAGGCAGATCCCTGTGTTGGGGTCA +
Preference number: 6 (lower is better)
Translates to: PGMHRSQDGPSV*WPHRQIPVLGS
Trigger: TGACCCCAACACAGGGATCTGCCTGTGTGGCCACCACACCGAGGGTCCATCCTGTGAGCGGTGCATGCCAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CAA 72 bp GGTCACAGCTGCAGGGAGCACATTTGTCCACGGGCCTaGTGGCCACGGCACTCCCGTAGAAACCCTCCCGAC +
Preference number: 6 (lower is better)
Translates to: GHSCREHICPRA*WPRHSRRNPPD
Trigger: GTCGGGAGGGTTTCTACGGGAGTGCCGTGGCCACAAGGCCCGTGGACAAATGTGCTCCCTGCAGCTGTGACC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CAA 90 bp CGCAGGCCCAGGAGGAGCCCACTCTGGCTCCATTGCAGAGGACGCTaGGACACTCCCATGCTTCTGATCTGCCAGCCACCAGCTCCATGG +
Preference number: 6 (lower is better)
Translates to: RRPRRSPLWLHCRGR*DTPMLLICQPPAPW
Trigger: CCATGGAGCTGGTGGCTGGCAGATCAGAAGCATGGGAGTGTCCAAGCGTCCTCTGCAATGGAGCCAGAGTGGGCTCCTCCTGGGCCTGCG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CAA 90 bp TTCCTCCCCTCCTCGCAGGCCCAGGAGGAGCCCACTCTGGCTCCATaGCAGAGGACGCTTGGACACTCCCATGCTTCTGATCTGCCAGCC +
Preference number: 6 (lower is better)
Translates to: FLPSSQAQEEPTLAP*QRTLGHSHASDLPA
Trigger: GGCTGGCAGATCAGAAGCATGGGAGTGTCCAAGCGTCCTCTGCAATGGAGCCAGAGTGGGCTCCTCCTGGGCCTGCGAGGAGGGGAGGAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS TCA 72 bp TCTGATCTGCCAGCCACCAGCTCCATGGCGGAAGTCTaGGCGGATGTGGTGTTCCTGGAACCCGGCAGCAGG +
Preference number: 6 (lower is better)
Translates to: SDLPATSSMAEV*ADVVFLEPGSR
Trigger: CCTGCTGCCGGGTTCCAGGAACACCACATCCGCTCAGACTTCCGCCATGGAGCTGGTGGCTGGCAGATCAGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS TCA 72 bp CCGGGCCGGCACACACAGGTGCTGTTCTCATGGCACTaGGATGAGGCAGCACCCAATGGGGAGCACCTACAG +
Preference number: 6 (lower is better)
Translates to: PGRHTQVLFSWH*DEAAPNGEHLQ
Trigger: CTGTAGGTGCTCCCCATTGGGTGCTGCCTCATCTCAGTGCCATGAGAACAGCACCTGTGTGTGCCGGCCCGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS GCA 72 bp GGTCACGGCACCGCTGACAGTGCCCACCATGGCCTGTaGTCCGATAGAGCTCCCTGTCAAACGTGCACTCCT +
Preference number: 6 (lower is better)
Translates to: GHGTADSAHHGL*SDRAPCQTCTP
Trigger: AGGAGTGCACGTTTGACAGGGAGCTCTATCGGAGCACAGGCCATGGTGGGCACTGTCAGCGGTGCCGTGACC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS GCA 72 bp CCTCGCAGGCCCAGGAGGAGCCCACTCTGGCTCCATTaGAGAGGACGCTTGGACACTCCCATGCTTCTGATC +
Preference number: 6 (lower is better)
Translates to: PRRPRRSPLWLH*RGRLDTPMLLI
Trigger: GATCAGAAGCATGGGAGTGTCCAAGCGTCCTCTGCAATGGAGCCAGAGTGGGCTCCTCCTGGGCCTGCGAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS GCA 72 bp CACGGCCTGAGAAGGCGTTACCGTAGAAACCTGGCATaGACCGCTCACAGGATGGACCCTCGGTGTGGTGGC +
Preference number: 6 (lower is better)
Translates to: HGLRRRYRRNLA*TAHRMDPRCGG
Trigger: GCCACCACACCGAGGGTCCATCCTGTGAGCGGTGCATGCCAGGTTTCTACGGTAACGCCTTCTCAGGCCGTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS GCA 72 bp CAGACTGGAGGTCATAGAAGCCAGGGCTGCAGCGGCTaGAGTCCCTCCCGGAGACATAAGGCAGGCAGACAC +
Preference number: 6 (lower is better)
Translates to: QTGGHRSQGCSG*SPSRRHKAGRH
Trigger: GTGTCTGCCTGCCTTATGTCTCCGGGAGGGACTGCAGCCGCTGCAGCCCTGGCTTCTATGACCTCCAGTCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS GCA 72 bp CCTTTTCAGCTTTGGGCAGCGCCTCTGCCACAGCTATaGCCAGGGCAGTCTGAGCTGCCTGCACCTCCTGGT +
Preference number: 6 (lower is better)
Translates to: PFQLWAAPLPQL*PGQSELPAPPG
Trigger: ACCAGGAGGTGCAGGCAGCTCAGACTGCCCTGGGCATAGCTGTGGCAGAGGCGCTGCCCAAAGCTGAAAAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS GCA 72 bp GGCTGGCGAGTCGGCTGGCATGACGGTAGCCCTGCTTaGCTTCCCTCAGCAAAGCTCTGGAGAGCTTGGCAT +
Preference number: 6 (lower is better)
Translates to: GWRVGWHDGSPA*LPSAKLWRAWH
Trigger: ATGCCAAGCTCTCCAGAGCTTTGCTGAGGGAAGGCAAGCAGGGCTACCGTCATGCCAGCCGACTCGCCAGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CCA 72 bp CACAGCTGCAGGGAGCACATTTGTCCACGGGCCTTGTaGCCACGGCACTCCCGTAGAAACCCTCCCGACAGT +
Preference number: 6 (lower is better)
Translates to: HSCREHICPRAL*PRHSRRNPPDS
Trigger: ACTGTCGGGAGGGTTTCTACGGGAGTGCCGTGGCCACAAGGCCCGTGGACAAATGTGCTCCCTGCAGCTGTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CAA 72 bp GAGGCGAGCAGGGCCCTTTCCGAGGTAGCTTCGATCTaGGTGGCCGTGTCCCTGTGGCTTCTGGCAAGGATC +
Preference number: 6 (lower is better)
Translates to: EASRALSEVASI*VAVSLWLLARI
Trigger: GATCCTTGCCAGAAGCCACAGGGACACGGCCACCAAGATCGAAGCTACCTCGGAAAGGGCCCTGCTCGCCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CAA 90 bp ACGCTGGGGCCAGGCCGATGTGAGCTGAACTTCACACAAGAGCACTaGGCCAGAATGGCCCGGTCCTTGGCCACTGGTCCAGATGCTCAG +
Preference number: 6 (lower is better)
Translates to: TLGPGRCELNFTQEH*ARMARSLATGPDAQ
Trigger: CTGAGCATCTGGACCAGTGGCCAAGGACCGGGCCATTCTGGCCAAGTGCTCTTGTGTGAAGTTCAGCTCACATCGGCCTGGCCCCAGCGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS TCA 72 bp CCAGCCTGTCACTGTGGGCTTGCAGGGACAGACGCCTaGGTTGTCACACTGGAGACTCAGAGAGCCTGCTGG +
Preference number: 6 (lower is better)
Translates to: PACHCGLAGTDA*VVTLETQRACW
Trigger: CCAGCAGGCTCTCTGAGTCTCCAGTGTGACAACTCAGGCGTCTGTCCCTGCAAGCCCACAGTGACAGGCTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS TCA 72 bp AGAGACAGAGCCAAGCCTGCTCCCTCCAGTCTCAGCTaGATAGGAGGTGGGGAGCCTCCAGGGGGTACTTGG +
Preference number: 6 (lower is better)
Translates to: RDRAKPAPSSLS*IGGGEPPGGTW
Trigger: CCAAGTACCCCCTGGAGGCTCCCCACCTCCTATTCAGCTGAGACTGGAGGGAGCAGGCTTGGCTCTGTCTCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS TCA 72 bp AGGGCACGGACAGGGCTGGCAATCATCAGCACGGCCTaGGAAGGCGTTACCGTAGAAACCTGGCATGCACCG +
Preference number: 6 (lower is better)
Translates to: RARTGLAIISTA*EGVTVETWHAP
Trigger: CGGTGCATGCCAGGTTTCTACGGTAACGCCTTCTCAGGCCGTGCTGATGATTGCCAGCCCTGTCCGTGCCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS TCA 72 bp CACACTGGCCAGTCACAGGGTTGCAGGTCTTCTCACTaGCTGAGCCCCTCAGGTCACAGCTGCAGGGAGCAC +
Preference number: 6 (lower is better)
Translates to: HTGQSQGCRSSH*LSPSGHSCREH
Trigger: GTGCTCCCTGCAGCTGTGACCTGAGGGGCTCAGTCAGTGAGAAGACCTGCAACCCTGTGACTGGCCAGTGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS GCA 72 bp GCTCCCTGTCAAACGTGCACTCCTCAGAGTGCCCACTaGAGTTGCAGGGCAGACACTCGTTGGCATCCTCGG +
Preference number: 6 (lower is better)
Translates to: APCQTCTPQSAH*SCRADTRWHPR
Trigger: CCGAGGATGCCAACGAGTGTCTGCCCTGCAACTGCAGTGGGCACTCTGAGGAGTGCACGTTTGACAGGGAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS GCA 72 bp GGCCAGAATGGCCCGGTCCTTGGCCACTGGTCCAGATaGTCAGAGCAGTCAGATTGGAAAGCAGGCGCTGGA +
Preference number: 6 (lower is better)
Translates to: GQNGPVLGHWSR*SEQSDWKAGAG
Trigger: TCCAGCGCCTGCTTTCCAATCTGACTGCTCTGAGCATCTGGACCAGTGGCCAAGGACCGGGCCATTCTGGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CCA 72 bp GGAAGAAGGGCAGACAACGCTCGCAGTCCACTCCTGTaGTGTTGTGCTGACAGCGGCAAGCCAGCTGACCAG +
Preference number: 6 (lower is better)
Translates to: GRRADNARSPLL*CCADSGKPADQ
Trigger: CTGGTCAGCTGGCTTGCCGCTGTCAGCACAACACCACAGGAGTGGACTGCGAGCGTTGTCTGCCCTTCTTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CCA 72 bp GCTCCATGGCGGAAGTCTGAGCGGATGTGGTGTTCCTaGAACCCGGCAGCAGGAGAACACACCTTGGAGTGG +
Preference number: 6 (lower is better)
Translates to: APWRKSERMWCS*NPAAGEHTLEW
Trigger: CCACTCCAAGGTGTGTTCTCCTGCTGCCGGGTTCCAGGAACACCACATCCGCTCAGACTTCCGCCATGGAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CCA 72 bp GTTACCGTAGAAACCTGGCATGCACCGCTCACAGGATaGACCCTCGGTGTGGTGGCCACACAGGCAGATCCC +
Preference number: 6 (lower is better)
Translates to: VTVETWHAPLTG*TLGVVATQADP
Trigger: GGGATCTGCCTGTGTGGCCACCACACCGAGGGTCCATCCTGTGAGCGGTGCATGCCAGGTTTCTACGGTAAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CCA 72 bp TCCGAGGTAGCTTCGATCTTGGTGGCCGTGTCCCTGTaGCTTCTGGCAAGGATCTGGGCCTCTGATGCCAGG +
Preference number: 6 (lower is better)
Translates to: SEVASILVAVSL*LLARIWASDAR
Trigger: CCTGGCATCAGAGGCCCAGATCCTTGCCAGAAGCCACAGGGACACGGCCACCAAGATCGAAGCTACCTCGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CAA 72 bp ACGGCCATAGGTTTTCTGGCAGGAGGCACTGTAGTATaGGTAGGGCTCCCAGGGGCCACTGGCGTACGTGCG +
Preference number: 6 (lower is better)
Translates to: TAIGFLAGGTVV*VGLPGATGVRA
Trigger: CGCACGTACGCCAGTGGCCCCTGGGAGCCCTACCAATACTACAGTGCCTCCTGCCAGAAAACCTATGGCCGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CAA 72 bp TCCTCGCAGGCCCAGGAGGAGCCCACTCTGGCTCCATaGCAGAGGACGCTTGGACACTCCCATGCTTCTGAT +
Preference number: 6 (lower is better)
Translates to: SSQAQEEPTLAP*QRTLGHSHASD
Trigger: ATCAGAAGCATGGGAGTGTCCAAGCGTCCTCTGCAATGGAGCCAGAGTGGGCTCCTCCTGGGCCTGCGAGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CAA 90 bp GCCCTCAGGACGGCCATAGGTTTTCTGGCAGGAGGCACTGTAGTATaGGTAGGGCTCCCAGGGGCCACTGGCGTACGTGCGCTTGTAGAT +
Preference number: 6 (lower is better)
Translates to: ALRTAIGFLAGGTVV*VGLPGATGVRALVD
Trigger: ATCTACAAGCGCACGTACGCCAGTGGCCCCTGGGAGCCCTACCAATACTACAGTGCCTCCTGCCAGAAAACCTATGGCCGTCCTGAGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CAA 90 bp CACTTCCAGCCTGTCACTGTGGGCTTGCAGGGACAGACGCCTGAGTaGTCACACTGGAGACTCAGAGAGCCTGCTGGGTGGCAGTCACAG +
Preference number: 6 (lower is better)
Translates to: HFQPVTVGLQGQTPE*SHWRLREPAGWQSQ
Trigger: CTGTGACTGCCACCCAGCAGGCTCTCTGAGTCTCCAGTGTGACAACTCAGGCGTCTGTCCCTGCAAGCCCACAGTGACAGGCTGGAAGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS TCA 72 bp CTGGAGGGGCAAGCTCACGCTGGGGCCAGGCCGATGTaGGCTGAACTTCACACAAGAGCACTTGGCCAGAAT +
Preference number: 6 (lower is better)
Translates to: LEGQAHAGARPM*AELHTRALGQN
Trigger: ATTCTGGCCAAGTGCTCTTGTGTGAAGTTCAGCTCACATCGGCCTGGCCCCAGCGTGAGCTTGCCCCTCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS TCA 72 bp CACCACATCTCCACTCTCTGGGATGGTTGCACAGGCTaGTTGGCCAGGGCACGGACAGGGCTGGCAATCATC +
Preference number: 6 (lower is better)
Translates to: HHISTLWDGCTG*LARARTGLAII
Trigger: GATGATTGCCAGCCCTGTCCGTGCCCTGGCCAATCAGCCTGTGCAACCATCCCAGAGAGTGGAGATGTGGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS TCA 72 bp AGAAACCTAGCTGGCATCTGTCACAGGCTTGGCCAGTaGCACCAGGTCGGCAGGGACACTGGCCAGTCTTGG +
Preference number: 6 (lower is better)
Translates to: RNLAGICHRLGQ*HQVGRDTGQSW
Trigger: CCAAGACTGGCCAGTGTCCCTGCCGACCTGGTGTCACTGGCCAAGCCTGTGACAGATGCCAGCTAGGTTTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS TCA 72 bp CCGGCACACACAGGTGCTGTTCTCATGGCACTGAGATaGGGCAGCACCCAATGGGGAGCACCTACAGTCTCG +
Preference number: 6 (lower is better)
Translates to: PAHTGAVLMALR*GSTQWGAPTVS
Trigger: CGAGACTGTAGGTGCTCCCCATTGGGTGCTGCCTCATCTCAGTGCCATGAGAACAGCACCTGTGTGTGCCGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS TCA 72 bp CGTGTCCCTGTGGCTTCTGGCAAGGATCTGGGCCTCTaGTGCCAGGTGACTCCAATTGGTGGGTGTGCTGGA +
Preference number: 6 (lower is better)
Translates to: RVPVASGKDLGL*CQVTPIGGCAG
Trigger: TCCAGCACACCCACCAATTGGAGTCACCTGGCATCAGAGGCCCAGATCCTTGCCAGAAGCCACAGGGACACG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS TCA 72 bp CTGTTTAGCTTCCTCCAGCTCCTGCTTGTGTGCTTCTaGGGTCAGCAGCAGGCGAGAGGCCCGACGGAGTGT +
Preference number: 6 (lower is better)
Translates to: LFSFLQLLLVCF*GQQQARGPTEC
Trigger: ACACTCCGTCGGGCCTCTCGCCTGCTGCTGACCTCAGAAGCACACAAGCAGGAGCTGGAGGAAGCTAAACAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS GCA 72 bp CCTAAGCTCAAGGTCAGGTTAACAGAGGTGGGGTACTaGACCCCGAAGGCCATGGATGGGCTCTGCCACCAG +
Preference number: 6 (lower is better)
Translates to: PKLKVRLTEVGY*TPKAMDGLCHQ
Trigger: CTGGTGGCAGAGCCCATCCATGGCCTTCGGGGTGCAGTACCCCACCTCTGTTAACCTGACCTTGAGCTTAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS GCA 72 bp AGTATTGGTAGGGCTCCCAGGGGCCACTGGCGTACGTaGGCTTGTAGATGGCAAAACTCTCAGGGCGACTGG +
Preference number: 6 (lower is better)
Translates to: SIGRAPRGHWRT*ACRWQNSQGDW
Trigger: CCAGTCGCCCTGAGAGTTTTGCCATCTACAAGCGCACGTACGCCAGTGGCCCCTGGGAGCCCTACCAATACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS GCA 72 bp CATGGCCTGTGCTCCGATAGAGCTCCCTGTCAAACGTaGACTCCTCAGAGTGCCCACTGCAGTTGCAGGGCA +
Preference number: 6 (lower is better)
Translates to: HGLCSDRAPCQT*TPQSAHCSCRA
Trigger: TGCCCTGCAACTGCAGTGGGCACTCTGAGGAGTGCACGTTTGACAGGGAGCTCTATCGGAGCACAGGCCATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS GCA 72 bp TGGGCACAGTGTACATGCCCTCTCAGCACCTGCAACTaGTCCCAAGTGGCCTTCACAGAATCCTCCAGGCCC +
Preference number: 6 (lower is better)
Translates to: WAQCTCPLSTCN*SQVAFTESSRP
Trigger: GGGCCTGGAGGATTCTGTGAAGGCCACTTGGGAGCAGTTGCAGGTGCTGAGAGGGCATGTACACTGTGCCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS GCA 72 bp TGTCCTCCAGTTCCTGCTGGGCTTCCGAGGCCACTCTaGCTTCCATCAGCTTCAGGAGCTCATAGCTGGCGT +
Preference number: 6 (lower is better)
Translates to: CPPVPAGLPRPL*LPSASGAHSWR
Trigger: ACGCCAGCTATGAGCTCCTGAAGCTGATGGAAGGCAGAGTGGCCTCGGAAGCCCAGCAGGAACTGGAGGACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CCA 72 bp GCTCCCAGGGGCCACTGGCGTACGTGCGCTTGTAGATaGCAAAACTCTCAGGGCGACTGGTGTGGAACTTCA +
Preference number: 6 (lower is better)
Translates to: APRGHWRTCACR*QNSQGDWCGTS
Trigger: TGAAGTTCCACACCAGTCGCCCTGAGAGTTTTGCCATCTACAAGCGCACGTACGCCAGTGGCCCCTGGGAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CCA 72 bp GAGTTGTCACACTGGAGACTCAGAGAGCCTGCTGGGTaGCAGTCACAGGGTTGGCATGGTGTCTTCGGGGAC +
Preference number: 6 (lower is better)
Translates to: ELSHWRLREPAG*QSQGWHGVFGD
Trigger: GTCCCCGAAGACACCATGCCAACCCTGTGACTGCCACCCAGCAGGCTCTCTGAGTCTCCAGTGTGACAACTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CCA 72 bp GCTTGGCTGCCTCTTCCTTCACTAGGGCATAGCAAGTaGGACACTCTTGGCAGCCTGTGTCGCCATCCGCGA +
Preference number: 6 (lower is better)
Translates to: AWLPLPSLGHSK*DTLGSLCRHPR
Trigger: TCGCGGATGGCGACACAGGCTGCCAAGAGTGTCCCACTTGCTATGCCCTAGTGAAGGAAGAGGCAGCCAAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CCA 72 bp GTGTCCTTCTCCAAGGAGATCCGAGACTCTCGGATCTaGCGCTCCACAGTGCTCAGCCCAGAGGTCACCTGT +
Preference number: 6 (lower is better)
Translates to: VSFSKEIRDSRI*RSTVLSPEVTC
Trigger: ACAGGTGACCTCTGGGCTGAGCACTGTGGAGCGCCAGATCCGAGAGTCTCGGATCTCCTTGGAGAAGGACAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CAA 72 bp CTCCAGGGCCTTCACTTTCCAGCTCAGGCCCCTGGCTaGGAAGTTCATTGCTTCAGGGGTGACCAGCAAGCC +
Preference number: 6 (lower is better)
Translates to: LQGLHFPAQAPG*EVHCFRGDQQA
Trigger: GGCTTGCTGGTCACCCCTGAAGCAATGAACTTCCAAGCCAGGGGCCTGAGCTGGAAAGTGAAGGCCCTGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CAA 90 bp ACCATCTGTAGTAGTTCTTCTCACAGCGCTCACAGTGTGGCCCAGTaGTGTGGTCACGGCACCGCTGACAGTGCCCACCATGGCCTGTGC +
Preference number: 6 (lower is better)
Translates to: TICSSSSHSAHSVAQ*CGHGTADSAHHGLC
Trigger: GCACAGGCCATGGTGGGCACTGTCAGCGGTGCCGTGACCACACAACTGGGCCACACTGTGAGCGCTGTGAGAAGAACTACTACAGATGGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CAA 90 bp CTCCAGTCTCAGCTGAATAGGAGGTGGGGAGCCTCCAGGGGGTACTaGGAGGGTCAGTATGACTGGCTGTCCATAGCTGAGTCTCTGGTC +
Preference number: 6 (lower is better)
Translates to: LQSQLNRRWGASRGY*EGQYDWLSIAESLV
Trigger: GACCAGAGACTCAGCTATGGACAGCCAGTCATACTGACCCTCCAAGTACCCCCTGGAGGCTCCCCACCTCCTATTCAGCTGAGACTGGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS GCA 72 bp AGCCCAGAGGTCACCTGTTTAGCTTCCTCCAGCTCCTaGTTGTGTGCTTCTGAGGTCAGCAGCAGGCGAGAG +
Preference number: 6 (lower is better)
Translates to: SPEVTCLASSSS*LCASEVSSRRE
Trigger: CTCTCGCCTGCTGCTGACCTCAGAAGCACACAAGCAGGAGCTGGAGGAAGCTAAACAGGTGACCTCTGGGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CCA 72 bp ACTCCCATGCTTCTGATCTGCCAGCCACCAGCTCCATaGCGGAAGTCTGAGCGGATGTGGTGTTCCTGGAAC +
Preference number: 6 (lower is better)
Translates to: TPMLLICQPPAP*RKSERMWCSWN
Trigger: GTTCCAGGAACACCACATCCGCTCAGACTTCCGCCATGGAGCTGGTGGCTGGCAGATCAGAAGCATGGGAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CCA 72 bp GGAGCCTCCAGGGGGTACTTGGAGGGTCAGTATGACTaGCTGTCCATAGCTGAGTCTCTGGTCTCCCAGGAA +
Preference number: 6 (lower is better)
Translates to: GASRGYLEGQYD*LSIAESLVSQE
Trigger: TTCCTGGGAGACCAGAGACTCAGCTATGGACAGCCAGTCATACTGACCCTCCAAGTACCCCCTGGAGGCTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CCA 72 bp CTTGGCCACTGGTCCAGATGCTCAGAGCAGTCAGATTaGAAAGCAGGCGCTGGAAGTGGAAGGTGGGCAGTG +
Preference number: 6 (lower is better)
Translates to: LGHWSRCSEQSD*KAGAGSGRWAV
Trigger: CACTGCCCACCTTCCACTTCCAGCGCCTGCTTTCCAATCTGACTGCTCTGAGCATCTGGACCAGTGGCCAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CCA 72 bp AAGCCAAAGAAACCTAGCTGGCATCTGTCACAGGCTTaGCCAGTGACACCAGGTCGGCAGGGACACTGGCCA +
Preference number: 6 (lower is better)
Translates to: KPKKPSWHLSQA*PVTPGRQGHWP
Trigger: TGGCCAGTGTCCCTGCCGACCTGGTGTCACTGGCCAAGCCTGTGACAGATGCCAGCTAGGTTTCTTTGGCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CCA 72 bp TCCAGGGCCTTCACTTTCCAGCTCAGGCCCCTGGCTTaGAAGTTCATTGCTTCAGGGGTGACCAGCAAGCCT +
Preference number: 6 (lower is better)
Translates to: SRAFTFQLRPLA*KFIASGVTSKP
Trigger: AGGCTTGCTGGTCACCCCTGAAGCAATGAACTTCCAAGCCAGGGGCCTGAGCTGGAAAGTGAAGGCCCTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CCA 72 bp GGGACCCCAGCTTCACAAGCAGCTCTGACAGGACCTTaGTGTCCTTCTCCAAGGAGATCCGAGACTCTCGGA +
Preference number: 6 (lower is better)
Translates to: GTPASQAALTGP*CPSPRRSETLG
Trigger: TCCGAGAGTCTCGGATCTCCTTGGAGAAGGACACCAAGGTCCTGTCAGAGCTGCTTGTGAAGCTGGGGTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CAA 72 bp AGTAGTTCTTCTCACAGCGCTCACAGTGTGGCCCAGTaGTGTGGTCACGGCACCGCTGACAGTGCCCACCAT +
Preference number: 6 (lower is better)
Translates to: SSSSHSAHSVAQ*CGHGTADSAHH
Trigger: ATGGTGGGCACTGTCAGCGGTGCCGTGACCACACAACTGGGCCACACTGTGAGCGCTGTGAGAAGAACTACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CAA 72 bp CAGCTGAATAGGAGGTGGGGAGCCTCCAGGGGGTACTaGGAGGGTCAGTATGACTGGCTGTCCATAGCTGAG +
Preference number: 6 (lower is better)
Translates to: QLNRRWGASRGY*EGQYDWLSIAE
Trigger: CTCAGCTATGGACAGCCAGTCATACTGACCCTCCAAGTACCCCCTGGAGGCTCCCCACCTCCTATTCAGCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CAA 72 bp TCAGCTAGCAGGGTCTCTGCTCCTATGACGGTCACCTaGGCAGCTTGCACAGCTGAGGAAGCCCGTGTGAAG +
Preference number: 6 (lower is better)
Translates to: SASRVSAPMTVT*AACTAEEARVK
Trigger: CTTCACACGGGCTTCCTCAGCTGTGCAAGCTGCCAAGGTGACCGTCATAGGAGCAGAGACCCTGCTAGCTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CAA 90 bp CTGGTCCTGATGCTGCCTGCTTTCTTCTTCAGCGCTGCCTGCTCCTaGGGTAGAGGAGACCTCAGCTTCATTCCCTCTAGGTCAGCTAGC +
Preference number: 6 (lower is better)
Translates to: LVLMLPAFFFSAACS*GRGDLSFIPSRSAS
Trigger: GCTAGCTGACCTAGAGGGAATGAAGCTGAGGTCTCCTCTACCCAAGGAGCAGGCAGCGCTGAAGAAGAAAGCAGGCAGCATCAGGACCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS TCA 72 bp TTGGGGTGGCACTTATTCTCCAAGGATCCAAGTGGGTaGCATTTGCAGCTCTGGCAGCCCCTCCCAGACTGG +
Preference number: 6 (lower is better)
Translates to: LGWHLFSKDPSG*HLQLWQPLPDW
Trigger: CCAGTCTGGGAGGGGCTGCCAGAGCTGCAAATGTCACCCACTTGGATCCTTGGAGAATAAGTGCCACCCCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS TCA 72 bp TTCCCTCTAGGTCAGCTAGCAGGGTCTCTGCTCCTATaGCGGTCACCTTGGCAGCTTGCACAGCTGAGGAAG +
Preference number: 6 (lower is better)
Translates to: FPLGQLAGSLLL*RSPWQLAQLRK
Trigger: CTTCCTCAGCTGTGCAAGCTGCCAAGGTGACCGTCATAGGAGCAGAGACCCTGCTAGCTGACCTAGAGGGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS TCA 72 bp TGGTCTTCCTCTTTGTGTCCTCCAGGAGCCTGGTCCTaGTGCTGCCTGCTTTCTTCTTCAGCGCTGCCTGCT +
Preference number: 6 (lower is better)
Translates to: WSSSLCPPGAWS*CCLLSSSALPA
Trigger: AGCAGGCAGCGCTGAAGAAGAAAGCAGGCAGCATCAGGACCAGGCTCCTGGAGGACACAAAGAGGAAGACCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS GCA 72 bp ATTTATAGCCCACAAAGCCGGGCCGGCACACACAGGTaGTGTTCTCATGGCACTGAGATGAGGCAGCACCCA +
Preference number: 6 (lower is better)
Translates to: IYSPQSRAGTHR*CSHGTEMRQHP
Trigger: TGGGTGCTGCCTCATCTCAGTGCCATGAGAACAGCACCTGTGTGTGCCGGCCCGGCTTTGTGGGCTATAAAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS GCA 72 bp AGCAAGCCTAGATGTGGGGCTGCGTCACCAATGACTTaGTTCACCGTGGCCAGTGCCTTTTCAGCTTTGGGC +
Preference number: 6 (lower is better)
Translates to: SKPRCGAASPMT*FTVASAFSALG
Trigger: GCCCAAAGCTGAAAAGGCACTGGCCACGGTGAAGCAAGTCATTGGTGACGCAGCCCCACATCTAGGCTTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CCA 72 bp CAGAGAGCCTGCTGGGTGGCAGTCACAGGGTTGGCATaGTGTCTTCGGGGACCATCTGTAGTAGTTCTTCTC +
Preference number: 6 (lower is better)
Translates to: QRACWVAVTGLA*CLRGPSVVVLL
Trigger: GAGAAGAACTACTACAGATGGTCCCCGAAGACACCATGCCAACCCTGTGACTGCCACCCAGCAGGCTCTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CCA 72 bp AGAGCACTTGGCCAGAATGGCCCGGTCCTTGGCCACTaGTCCAGATGCTCAGAGCAGTCAGATTGGAAAGCA +
Preference number: 6 (lower is better)
Translates to: RALGQNGPVLGH*SRCSEQSDWKA
Trigger: TGCTTTCCAATCTGACTGCTCTGAGCATCTGGACCAGTGGCCAAGGACCGGGCCATTCTGGCCAAGTGCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CCA 72 bp CGGCAGCCCTTGATGGAGAAGCCAAAGAAACCTAGCTaGCATCTGTCACAGGCTTGGCCAGTGACACCAGGT +
Preference number: 6 (lower is better)
Translates to: RQPLMEKPKKPS*HLSQAWPVTPG
Trigger: ACCTGGTGTCACTGGCCAAGCCTGTGACAGATGCCAGCTAGGTTTCTTTGGCTTCTCCATCAAGGGCTGCCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CAA 72 bp GAGACTCAGAGAGCCTGCTGGGTGGCAGTCACAGGGTaGGCATGGTGTCTTCGGGGACCATCTGTAGTAGTT +
Preference number: 6 (lower is better)
Translates to: ETQRACWVAVTG*AWCLRGPSVVV
Trigger: AACTACTACAGATGGTCCCCGAAGACACCATGCCAACCCTGTGACTGCCACCCAGCAGGCTCTCTGAGTCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CAA 72 bp GCACCCAATGGGGAGCACCTACAGTCTCGGCAGCCCTaGATGGAGAAGCCAAAGAAACCTAGCTGGCATCTG +
Preference number: 6 (lower is better)
Translates to: APNGEHLQSRQP*MEKPKKPSWHL
Trigger: CAGATGCCAGCTAGGTTTCTTTGGCTTCTCCATCAAGGGCTGCCGAGACTGTAGGTGCTCCCCATTGGGTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CAA 90 bp GTCACACTGGAGACTCAGAGAGCCTGCTGGGTGGCAGTCACAGGGTaGGCATGGTGTCTTCGGGGACCATCTGTAGTAGTTCTTCTCACA +
Preference number: 6 (lower is better)
Translates to: VTLETQRACWVAVTG*AWCLRGPSVVVLLT
Trigger: TGTGAGAAGAACTACTACAGATGGTCCCCGAAGACACCATGCCAACCCTGTGACTGCCACCCAGCAGGCTCTCTGAGTCTCCAGTGTGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS TCA 72 bp CACCCAATGGGGAGCACCTACAGTCTCGGCAGCCCTTaGTGGAGAAGCCAAAGAAACCTAGCTGGCATCTGT +
Preference number: 6 (lower is better)
Translates to: HPMGSTYSLGSP*WRSQRNLAGIC
Trigger: ACAGATGCCAGCTAGGTTTCTTTGGCTTCTCCATCAAGGGCTGCCGAGACTGTAGGTGCTCCCCATTGGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS TCA 72 bp TGCTCCTATGACGGTCACCTTGGCAGCTTGCACAGCTaGGGAAGCCCGTGTGAAGGCAGCTGTGGTCTTATT +
Preference number: 6 (lower is better)
Translates to: CSYDGHLGSLHS*GSPCEGSCGLI
Trigger: AATAAGACCACAGCTGCCTTCACACGGGCTTCCTCAGCTGTGCAAGCTGCCAAGGTGACCGTCATAGGAGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CCA 72 bp AGTCTTGGGGTGGCACTTATTCTCCAAGGATCCAAGTaGGTGACATTTGCAGCTCTGGCAGCCCCTCCCAGA +
Preference number: 6 (lower is better)
Translates to: SLGVALILQGSK*VTFAALAAPPR
Trigger: TCTGGGAGGGGCTGCCAGAGCTGCAAATGTCACCCACTTGGATCCTTGGAGAATAAGTGCCACCCCAAGACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CAA 72 bp ATGCTGCCTGCTTTCTTCTTCAGCGCTGCCTGCTCCTaGGGTAGAGGAGACCTCAGCTTCATTCCCTCTAGG +
Preference number: 6 (lower is better)
Translates to: MLPAFFFSAACS*GRGDLSFIPSR
Trigger: CCTAGAGGGAATGAAGCTGAGGTCTCCTCTACCCAAGGAGCAGGCAGCGCTGAAGAAGAAAGCAGGCAGCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CAA 72 bp CAGTTCTCTGGCAGACTGCTCAGAATGGTCTCCAAGTaGTGCTTGTCAGCGCGGATCTCAGCAAGGTCGTCC +
Preference number: 6 (lower is better)
Translates to: QFSGRLLRMVSK*CLSARISARSS
Trigger: GGACGACCTTGCTGAGATCCGCGCTGACAAGCACAACTTGGAGACCATTCTGAGCAGTCTGCCAGAGAACTG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS CAA 90 bp GCTTGCACAGCTGAGGAAGCCCGTGTGAAGGCAGCTGTGGTCTTATaGCGTAGCTGCATAAAGGGCTCCATCTTCTCCAAGGCTCTTCCA +
Preference number: 6 (lower is better)
Translates to: ACTAEEARVKAAVVL*RSCIKGSIFSKALP
Trigger: TGGAAGAGCCTTGGAGAAGATGGAGCCCTTTATGCAGCTACGCAATAAGACCACAGCTGCCTTCACACGGGCTTCCTCAGCTGTGCAAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS GCA 72 bp CATTGGGTTCGCATTCACTGGCGTGACCATTGCATTTaGACCTGCCACCCACAGAGAAGTCAGACACAGCGT +
Preference number: 6 (lower is better)
Translates to: HWVRIHWRDHCI*TCHPQRSQTQR
Trigger: ACGCTGTGTCTGACTTCTCTGTGGGTGGCAGGTGCAAATGCAATGGTCACGCCAGTGAATGCGAACCCAATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS GCA 72 bp GCCCGTGTGAAGGCAGCTGTGGTCTTATTGCGTAGCTaGATAAAGGGCTCCATCTTCTCCAAGGCTCTTCCA +
Preference number: 6 (lower is better)
Translates to: ARVKAAVVLLRS*IKGSIFSKALP
Trigger: TGGAAGAGCCTTGGAGAAGATGGAGCCCTTTATGCAGCTACGCAATAAGACCACAGCTGCCTTCACACGGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS GCA 72 bp TTCTCTGGCAGACTGCTCAGAATGGTCTCCAAGTTGTaGTTGTCAGCGCGGATCTCAGCAAGGTCGTCCTCA +
Preference number: 6 (lower is better)
Translates to: FSGRLLRMVSKL*LSARISARSSS
Trigger: TGAGGACGACCTTGCTGAGATCCGCGCTGACAAGCACAACTTGGAGACCATTCTGAGCAGTCTGCCAGAGAA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS CCA 72 bp GGATCTGGGCCTCTGATGCCAGGTGACTCCAATTGGTaGGTGTGCTGGATCCTTTCTGAAGACTTGCCAGAA +
Preference number: 6 (lower is better)
Translates to: GSGPLMPGDSNW*VCWILSEDLPE
Trigger: TTCTGGCAAGTCTTCAGAAAGGATCCAGCACACCCACCAATTGGAGTCACCTGGCATCAGAGGCCCAGATCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS CCA 72 bp CAAGGATCTGGGCCTCTGATGCCAGGTGACTCCAATTaGTGGGTGTGCTGGATCCTTTCTGAAGACTTGCCA +
Preference number: 6 (lower is better)
Translates to: QGSGPLMPGDSN*WVCWILSEDLP
Trigger: TGGCAAGTCTTCAGAAAGGATCCAGCACACCCACCAATTGGAGTCACCTGGCATCAGAGGCCCAGATCCTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS CCA 72 bp CAAGGATCTGGGCCTCTGATGCCAGGTGACTCCAATTaGTGGGTGTGCTGGATCCTTTCTGAAGACTTGCCT +
Preference number: 6 (lower is better)
Translates to: QGSGPLMPGDSN*WVCWILSEDLP
Trigger: AGGCAAGTCTTCAGAAAGGATCCAGCACACCCACCAATTGGAGTCACCTGGCATCAGAGGCCCAGATCCTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138325.8
CDS CAA 72 bp GCTGAGGAAGCCCGTGTGAAGGCAGCTGTGGTCTTATaGCGTAGCTGCATAAAGGGCTCCATCTTCTCCAAG +
Preference number: 6 (lower is better)
Translates to: AEEARVKAAVVL*RSCIKGSIFSK
Trigger: CTTGGAGAAGATGGAGCCCTTTATGCAGCTACGCAATAAGACCACAGCTGCCTTCACACGGGCTTCCTCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS GCA 72 bp GGGCCTCTGATGCCAGGTGACTCCAATTGGTGGGTGTaGTGGATCCTTTCTGAAGACTTGCCAGAAATGAGA +
Preference number: 6 (lower is better)
Translates to: GPLMPGDSNWWV*WILSEDLPEMR
Trigger: TCTCATTTCTGGCAAGTCTTCAGAAAGGATCCAGCACACCCACCAATTGGAGTCACCTGGCATCAGAGGCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS CCA 72 bp TCTCTCTTGTATCCCAGAGCACAGAATTCACAGAACTaGCCTGTGTATCCCTGGGGACATAAGCAGGTCTCC +
Preference number: 6 (lower is better)
Translates to: SLLYPRAQNSQN*PVYPWGHKQVS
Trigger: GGAGACCTGCTTATGTCCCCAGGGATACACAGGCCAGTTCTGTGAATTCTGTGCTCTGGGATACAAGAGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CAA 72 bp TCCAATTGGTGGGTGTGCTGGATCCTTTCTGAAGACTaGCCAGAAATGAGAGAGCTGAGGCTGCACGAAGGA +
Preference number: 6 (lower is better)
Translates to: SNWWVCWILSED*PEMRELRLHEG
Trigger: TCCTTCGTGCAGCCTCAGCTCTCTCATTTCTGGCAAGTCTTCAGAAAGGATCCAGCACACCCACCAATTGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028187.7
CDS CAA 72 bp CCCTGCTTGCCTTCCCTCAGCAAAGCTCTGGAGAGCTaGGCATTGTCCTTAGACATCAGTTCTGCTTCTTTG +
Preference number: 6 (lower is better)
Translates to: PCLPSLSKALES*ALSLDISSASL
Trigger: CAAAGAAGCAGAACTGATGTCTAAGGACAATGCCAAGCTCTCCAGAGCTTTGCTGAGGGAAGGCAAGCAGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8
CDS CAA 72 bp TTGCCTTCCCTCAGCAAAGCTCTGGAGAGCTTGGCATaGTCCTTAGACATCAGTTCTGCTTCTTTGCTTTTC +
Preference number: 6 (lower is better)
Translates to: LPSLSKALESLA*SLDISSASLLF
Trigger: GAAAAGCAAAGAAGCAGAACTGATGTCTAAGGACAATGCCAAGCTCTCCAGAGCTTTGCTGAGGGAAGGCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028187.7
ENSMUST00000138325.8