RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LAMC1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026478

Ensembl transcript IDs: ENSMUST00000027752.15, ENSMUST00000161744.2, ENSMUST00000163011.2

Found 434 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GGTCAGCTGGGCCACACTGGCATAGATCTCTACGGCTTTGTCACCTaGACGCTTGGCTTCCTCATGGACTCGGGCAGCCTGCTTCTCCAG +
Preference number: 1 (lower is better)
Translates to: GQLGHTGIDLYGFVT*TLGFLMDSGSLLLQ
Trigger: CTGGAGAAGCAGGCTGCCCGAGTCCATGAGGAAGCCAAGCGTGCAGGTGACAAAGCCGTAGAGATCTATGCCAGTGTGGCCCAGCTGACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163011.2
3UTR CCA 90 bp GGGCCACACTGGCATAGATCTCTACGGCTTTGTCACCTGCACGCTTaGCTTCCTCATGGACTCGGGCAGCCTGCTTCTCCAGGTCCTGAG +
Preference number: 1 (lower is better)
Translates to: GPHWHRSLRLCHLHA*LPHGLGQPASPGPE
Trigger: CTCAGGACCTGGAGAAGCAGGCTGCCCGAGTCCATGAGGAAGCCAAGCGTGCAGGTGACAAAGCCGTAGAGATCTATGCCAGTGTGGCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163011.2
3UTR TCA 90 bp TGGGCAGAGCCACAAAGTGCAGGAACTAGATGGGGTTGGCAGCCTTaGGAAACACTGAGAGCGGGTGTTTGCCACCAGGACCTGGCAAAC +
Preference number: 1 (lower is better)
Translates to: WAEPQSAGTRWGWQP*ETLRAGVCHQDLAN
Trigger: GTTTGCCAGGTCCTGGTGGCAAACACCCGCTCTCAGTGTTTCTCAAGGCTGCCAACCCCATCTAGTTCCTGCACTTTGTGGCTCTGCCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
3UTR TCA 90 bp CACAAAGTGCAGGAACTAGATGGGGTTGGCAGCCTTGAGAAACACTaGGAGCGGGTGTTTGCCACCAGGACCTGGCAAACAACGATGTGC +
Preference number: 1 (lower is better)
Translates to: HKVQELDGVGSLEKH*ERVFATRTWQTTMC
Trigger: GCACATCGTTGTTTGCCAGGTCCTGGTGGCAAACACCCGCTCTCAGTGTTTCTCAAGGCTGCCAACCCCATCTAGTTCCTGCACTTTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
3UTR TCA 90 bp CGCTTGGCTTCCTCATGGACTCGGGCAGCCTGCTTCTCCAGGTCCTaGGAGATGTTCTTTGCTTGTTCATACTTCCGGTTAAGTTCTTCA +
Preference number: 1 (lower is better)
Translates to: RLASSWTRAACFSRS*EMFFACSYFRLSSS
Trigger: TGAAGAACTTAACCGGAAGTATGAACAAGCAAAGAACATCTCTCAGGACCTGGAGAAGCAGGCTGCCCGAGTCCATGAGGAAGCCAAGCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163011.2
3UTR TCA 90 bp GATGCCGTGACTTCAGGCAAACAAGGGAAAGTTCCGGTAGGGTGCTaGCAGAAGTGGAGGAGAGACTTTATTAGGCAAAACCCTTTGTTC +
Preference number: 1 (lower is better)
Translates to: DAVTSGKQGKVPVGC*QKWRRDFIRQNPLF
Trigger: GAACAAAGGGTTTTGCCTAATAAAGTCTCTCCTCCACTTCTGTCAGCACCCTACCGGAACTTTCCCTTGTTTGCCTGAAGTCACGGCATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
3UTR TCA 90 bp AGAGCGGGTGTTTGCCACCAGGACCTGGCAAACAACGATGTGCTCTaGAGAGTTCTAGAAAGAACGGAAACATCAGAAGAGAATGGAGCT +
Preference number: 1 (lower is better)
Translates to: RAGVCHQDLANNDVL*RVLERTETSEENGA
Trigger: AGCTCCATTCTCTTCTGATGTTTCCGTTCTTTCTAGAACTCTTCAGAGCACATCGTTGTTTGCCAGGTCCTGGTGGCAAACACCCGCTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
3UTR TCA 90 bp GGCAGAAGATGCAGAGCGGACATACTGGCCATCTCAATGCTACGATaGGGAGCCAAAGATTTCCTTCATAGAAACATGAGTACTGAGATA +
Preference number: 1 (lower is better)
Translates to: GRRCRADILAISMLR*GAKDFLHRNMSTEI
Trigger: TATCTCAGTACTCATGTTTCTATGAAGGAAATCTTTGGCTCCTCATCGTAGCATTGAGATGGCCAGTATGTCCGCTCTGCATCTTCTGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
3UTR TCA 90 bp CTCAGCCAGCCAGCATGTCTGATGGATGGCCATCACCATTCTAAATaGCCAATACCTTTGGCACAGGATGTTTATTTCCTTTCAAAGAGG +
Preference number: 1 (lower is better)
Translates to: LSQPACLMDGHHHSK*PIPLAQDVYFLSKR
Trigger: CCTCTTTGAAAGGAAATAAACATCCTGTGCCAAAGGTATTGGTCATTTAGAATGGTGATGGCCATCCATCAGACATGCTGGCTGGCTGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
3UTR CCA 90 bp TTATTTCCTTTCAAAGAGGAGGCAGAAGATGCAGAGCGGACATACTaGCCATCTCAATGCTACGATGAGGAGCCAAAGATTTCCTTCATA +
Preference number: 1 (lower is better)
Translates to: LFPFKEEAEDAERTY*PSQCYDEEPKISFI
Trigger: TATGAAGGAAATCTTTGGCTCCTCATCGTAGCATTGAGATGGCCAGTATGTCCGCTCTGCATCTTCTGCCTCCTCTTTGAAAGGAAATAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
3UTR TCA 90 bp CTTTGTTCCTGGTTAAAGATGTTTAACTTGCTTCTCTTTAAACTCTaGCTTTTCTTGGGTCAAAAGGACAGTGATGGAGAGCAGCAGAGA +
Preference number: 1 (lower is better)
Translates to: LCSWLKMFNLLLFKL*LFLGQKDSDGEQQR
Trigger: TCTCTGCTGCTCTCCATCACTGTCCTTTTGACCCAAGAAAAGTCAGAGTTTAAAGAGAAGCAAGTTAAACATCTTTAACCAGGAACAAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
3UTR GCA 90 bp GTGTCAGATAATAGTTTCTTTCCCCCGCTACGCAAAGTACAAAATTaGATAGTGTTAAAGGCTAAATATGAATCTCAGAGGCAGGTAGGT +
Preference number: 1 (lower is better)
Translates to: VSDNSFFPPLRKVQN*IVLKAKYESQRQVG
Trigger: ACCTACCTGCCTCTGAGATTCATATTTAGCCTTTAACACTATGCAATTTTGTACTTTGCGTAGCGGGGGAAAGAAACTATTATCTGACAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
3UTR-3UTR TCA 90 bp CTACTGCTCCGGGGCAGGCATGAGAACCTTGAGGAGCTGCAGCTCAGATGGTCAGTCAGGTTGTGGAGGTaGGCAGGCTTCCCGTCAGAC +
Preference number: 2 (lower is better)
Translates to: LLLRGRHENLEELQLRWSVRLWR*AGFPSD
Trigger: GTCTGACGGGAAGCCTGCTCACCTCCACAACCTGAC...TGACCATCTGAGCTGCAGCTCCTCAAGGTTCTCATGCCTGCCCCGGAGCAGTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027752.15
ENSMUST00000161744.2
3UTR-3UTR TCA 90 bp AGGTTGAGAAGCCCACTAGGAAATGCCACGCATGGATCTTCCCTCTCCACACAGTGGGGTTGGCAGCCTTaGGAAACACTGAGAGCGGGT +
Preference number: 2 (lower is better)
Translates to: RLRSPLGNATHGSSLSTQWGWQP*ETLRAG
Trigger: ACCCGCTCTCAGTGTTTCTCAAGGCTGCCAACCCCA...CTGTGTGGAGAGGGAAGATCCATGCGTGGCATTTCCTAGTGGGCTTCTCAACCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
3UTR-3UTR TCA 90 bp GCATCGGCTCGAGCTAGGAGTTGGTCGGCGGTCTGCTGTTCAGCTTTCCCCTTCCTCTCATGTCTTCCCTaGGGTCCTCGTAATCCTTTA +
Preference number: 2 (lower is better)
Translates to: ASARARSWSAVCCSAFPFLSCLP*GPRNPL
Trigger: TAAAGGATTACGAGGACCTCAGGGAAGACATGAGAG...GAAGGGGAAAGCTGAACAGCAGACCGCCGACCAACTCCTAGCTCGAGCCGATGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163011.2
3UTR-3UTR GCA 90 bp GGTGCGTGCGAGCTGCCCATCCAGACTTTTTATCAGCTGCCTGAGGATTTGGGAAGAGGAGGCAGAAGATaGAGAGCGGACATACTGGCC +
Preference number: 2 (lower is better)
Translates to: GACELPIQTFYQLPEDLGRGGRR*RADILA
Trigger: GGCCAGTATGTCCGCTCTGCATCTTCTGCCTCCTCT...TCCCAAATCCTCAGGCAGCTGATAAAAAGTCTGGATGGGCAGCTCGCACGCACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
3UTR-3UTR CCA 90 bp AAGAGGAGGCAGAAGATGCAGAGCGGACATACTGGCCATCTCAATGCTACGATGGAGAGGGGAGGGGGCTaGGTCTGCCCTGGCATTAAA +
Preference number: 2 (lower is better)
Translates to: KRRQKMQSGHTGHLNATMERGGG*VCPGIK
Trigger: TTTAATGCCAGGGCAGACCCAGCCCCCTCCCCTCTC...CATCGTAGCATTGAGATGGCCAGTATGTCCGCTCTGCATCTTCTGCCTCCTCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
3UTR-3UTR TCA 90 bp GGTGCGTGCGAGCTGCCCATCCAGACTTTTTATCAGCTGCCTGAGGATTTGGGAGGGTCAAAAGGACAGTaGTGGAGAGCAGCAGAGAAG +
Preference number: 2 (lower is better)
Translates to: GACELPIQTFYQLPEDLGGSKGQ*WRAAEK
Trigger: CTTCTCTGCTGCTCTCCATCACTGTCCTTTTGACCC...TCCCAAATCCTCAGGCAGCTGATAAAAAGTCTGGATGGGCAGCTCGCACGCACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
3UTR-3UTR GCA 90 bp AGGTTGAGAAGCCCACTAGGAAATGCCACGCATGGATCTTCCCTCTCCACACAGTGGCTCTGTGTCCTATaGTCAGCCAGCCAGCATGTC +
Preference number: 2 (lower is better)
Translates to: RLRSPLGNATHGSSLSTQWLCVL*SASQHV
Trigger: GACATGCTGGCTGGCTGAGCATAGGACACAGAGCCA...CTGTGTGGAGAGGGAAGATCCATGCGTGGCATTTCCTAGTGGGCTTCTCAACCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
3UTR-3UTR TCA 90 bp GTGGAGTTGACCCAAAGAATGCTGGTGGTGGTCTGTTTCAGCCATTTTCTTGCAGTCAGGTTGTGGAGGTaGGCAGGCTTCCCGTCAGAC +
Preference number: 2 (lower is better)
Translates to: VELTQRMLVVVCFSHFLAVRLWR*AGFPSD
Trigger: GTCTGACGGGAAGCCTGCTCACCTCCACAACCTGAC...TGCAAGAAAATGGCTGAAACAGACCACCACCAGCATTCTTTGGGTCAACTCCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027752.15
ENSMUST00000161744.2
3UTR-3UTR GCA 90 bp CAGCATCGGCTCGAGCTAGGAGTTGGTCGGCGGTCTGCTGTTCAGCTTTCCCCTCTGAGAGATGTTCTTTaGTTGTTCATACTTCCGGTT +
Preference number: 2 (lower is better)
Translates to: QHRLELGVGRRSAVQLSPLRDVL*LFILPV
Trigger: AACCGGAAGTATGAACAAGCAAAGAACATCTCTCAG...AGGGGAAAGCTGAACAGCAGACCGCCGACCAACTCCTAGCTCGAGCCGATGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163011.2
3UTR-3UTR CCA 90 bp GTGGAGTTGACCCAAAGAATGCTGGTGGTGGTCTGTTTCAGCCATTTTCTTGCACGACGTGACCAGGCATaGTACAGGTTCCTGTGCCAG +
Preference number: 2 (lower is better)
Translates to: VELTQRMLVVVCFSHFLARRDQA*YRFLCQ
Trigger: CTGGCACAGGAACCTGTACCATGCCTGGTCACGTCG...TGCAAGAAAATGGCTGAAACAGACCACCACCAGCATTCTTTGGGTCAACTCCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027752.15
ENSMUST00000161744.2
3UTR-3UTR TCA 90 bp ATGGGGTTGGCAGCCTTGAGAAACACTGAGAGCGGGTGTTTGCCACCAGGACCTAACAACGATGTGCTCTaGAGAGTTCTAGAAAGAACG +
Preference number: 2 (lower is better)
Translates to: MGLAALRNTESGCLPPGPNNDVL*RVLERT
Trigger: CGTTCTTTCTAGAACTCTTCAGAGCACATCGTTGTT...AGGTCCTGGTGGCAAACACCCGCTCTCAGTGTTTCTCAAGGCTGCCAACCCCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
3UTR-3UTR CCA 90 bp ATGGGGTTGGCAGCCTTGAGAAACACTGAGAGCGGGTGTTTGCCACCAGGACCTAACTCTGACTTTTCTTaGGTCAAAAGGACAGTGATG +
Preference number: 2 (lower is better)
Translates to: MGLAALRNTESGCLPPGPNSDFS*VKRTVM
Trigger: CATCACTGTCCTTTTGACCCAAGAAAAGTCAGAGTT...AGGTCCTGGTGGCAAACACCCGCTCTCAGTGTTTCTCAAGGCTGCCAACCCCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
3UTR-3UTR CCA 90 bp CTCAAGTGTTCAGTCATCACATGCTCCCTTAGAAAACTGACCCGTGTGGGAAGGAACACAAGGCAGAGGTaGAGCAAAACACTGGGGACT +
Preference number: 2 (lower is better)
Translates to: LKCSVITCSLRKLTRVGRNTRQR*SKTLGT
Trigger: AGTCCCCAGTGTTTTGCTCCACCTCTGCCTTGTGTT...CCTTCCCACACGGGTCAGTTTTCTAAGGGAGCATGTGATGACTGAACACTTGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000027752.15
ENSMUST00000161744.2
3UTR-3UTR GCA 90 bp GGAAATGCCACGCATGGATCTTCCCTCTCCACACAGAGGAAAGGCTTGGAGTGGAGACTTTTTATCAGCTaGCTGAGGATTTGGGAAACA +
Preference number: 2 (lower is better)
Translates to: GNATHGSSLSTQRKGLEWRLFIS*LRIWET
Trigger: TGTTTCCCAAATCCTCAGGCAGCTGATAAAAAGTCT...CCACTCCAAGCCTTTCCTCTGTGTGGAGAGGGAAGATCCATGCGTGGCATTTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
3UTR-3UTR TCA 90 bp AATATGGGGAAAAGGAGATTTGCTCTTCTTTCATTGGTCAAGACCTTAGAGGACGTTCCGGTAGGGTGCTaGCAGAAGTGGAGGAGAGAC +
Preference number: 2 (lower is better)
Translates to: NMGKRRFALLSLVKTLEDVPVGC*QKWRRD
Trigger: GTCTCTCCTCCACTTCTGTCAGCACCCTACCGGAAC...GTCCTCTAAGGTCTTGACCAATGAAAGAAGAGCAAATCTCCTTTTCCCCATATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
3UTR-3UTR GCA 90 bp TTGACCCAAAGAATGCTGGTGGTGGTCTGTTTCAGCCATTTTCTTGCAACTGTGAAGCCCACTAGGAAATaGCACGCATGGATCTTCCCT +
Preference number: 2 (lower is better)
Translates to: LTQRMLVVVCFSHFLATVKPTRK*HAWIFP
Trigger: AGGGAAGATCCATGCGTGGCATTTCCTAGTGGGCTT...CACAGTTGCAAGAAAATGGCTGAAACAGACCACCACCAGCATTCTTTGGGTCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
3UTR-3UTR CCA 90 bp GGAAATGCCACGCATGGATCTTCCCTCTCCACACAGAGGAAAGGCTTGGAGTGGAATGACCAATACCTTTaGCACAGGATGTTTATTTCC +
Preference number: 2 (lower is better)
Translates to: GNATHGSSLSTQRKGLEWNDQYL*HRMFIS
Trigger: GGAAATAAACATCCTGTGCCAAAGGTATTGGTCATT...CCACTCCAAGCCTTTCCTCTGTGTGGAGAGGGAAGATCCATGCGTGGCATTTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
3UTR-3UTR CCA 90 bp GGGATAAAACAATCTGTTCTGTGCGGCACCCCGCATTCTACAGCAGCCATTCTGAGCTGCCTGAGGATTTaGGAAACATTCATCTTCCTA +
Preference number: 2 (lower is better)
Translates to: GIKQSVLCGTPHSTAAILSCLRI*ETFIFL
Trigger: TAGGAAGATGAATGTTTCCCAAATCCTCAGGCAGCT...CAGAATGGCTGCTGTAGAATGCGGGGTGCCGCACAGAACAGATTGTTTTATCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
3UTR-3UTR GCA 90 bp TACAGGTTATTGGAACTATACAATAAAGCAATGGCTGTGTCGAAGGAGTGTAATTCACGTAGTGGTGCGTaGGAGCTGCCCATCCAGACT +
Preference number: 2 (lower is better)
Translates to: YRLLELYNKAMAVSKECNSRSGA*ELPIQT
Trigger: AGTCTGGATGGGCAGCTCGCACGCACCACTACGTGA...ATTACACTCCTTCGACACAGCCATTGCTTTATTGTATAGTTCCAATAACCTGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
3UTR-3UTR TCA 90 bp CTGACCCGTGTGGGAAGGTTCCACAAACAAACGTTCCTAATCCCTTTACCCTGTCTTCTCTTTAAACTCTaGCTTTTCTTGGGTCAAAAG +
Preference number: 2 (lower is better)
Translates to: LTRVGRFHKQTFLIPLPCLLFKL*LFLGQK
Trigger: CTTTTGACCCAAGAAAAGTCAGAGTTTAAAGAGAAG...ACAGGGTAAAGGGATTAGGAACGTTTGTTTGTGGAACCTTCCCACACGGGTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
3UTR-3UTR TCA 90 bp TACAGGTTATTGGAACTATACAATAAAGCAATGGCTGTGTCGAAGGAGTGTAATCATCACCATTCTAAATaGCCAATACCTTTGGCACAG +
Preference number: 2 (lower is better)
Translates to: YRLLELYNKAMAVSKECNHHHSK*PIPLAQ
Trigger: CTGTGCCAAAGGTATTGGTCATTTAGAATGGTGATG...ATTACACTCCTTCGACACAGCCATTGCTTTATTGTATAGTTCCAATAACCTGTA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
3UTR-3UTR TCA 90 bp AGTTCCAAGACTAACACTAACAAAGCTTCAAGAATTAGTACTACTTGGGGAAAACATCTTCCTAGTCAATaGAAACAGGAGGAAACCCTA +
Preference number: 2 (lower is better)
Translates to: SSKTNTNKASRISTTWGKHLPSQ*KQEETL
Trigger: TAGGGTTTCCTCCTGTTTTCATTGACTAGGAAGATG...TTTTCCCCAAGTAGTACTAATTCTTGAAGCTTTGTTAGTGTTAGTCTTGGAACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
3UTR TCA 72 bp CCACCCACCAGCGCCTCGGGCCTGCTGGAGTGGAGTTaGCCCAAAGAATGCTGGTGGTGGTCTGTTTCAGCC +
Preference number: 3 (lower is better)
Translates to: PPTSASGLLEWS*PKECWWWSVSA
Trigger: GGCTGAAACAGACCACCACCAGCATTCTTTGGGTCAACTCCACTCCAGCAGGCCCGAGGCGCTGGTGGGTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027752.15
ENSMUST00000161744.2
3UTR GCA 72 bp TACTGCTCCGGGGCAGGCATGAGAACCTTGAGGAGCTaGAGCTCAGATGGTCAGAGCCACGGGGAAGAGGGC +
Preference number: 3 (lower is better)
Translates to: YCSGAGMRTLRS*SSDGQSHGEEG
Trigger: GCCCTCTTCCCCGTGGCTCTGACCATCTGAGCTGCAGCTCCTCAAGGTTCTCATGCCTGCCCCGGAGCAGTA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027752.15
ENSMUST00000161744.2
3UTR CCA 72 bp GGCAGGCATGAGAACCTTGAGGAGCTGCAGCTCAGATaGTCAGAGCCACGGGGAAGAGGGCCCTCTTCGGTC +
Preference number: 3 (lower is better)
Translates to: GRHENLEELQLR*SEPRGRGPSSV
Trigger: GACCGAAGAGGGCCCTCTTCCCCGTGGCTCTGACCATCTGAGCTGCAGCTCCTCAAGGTTCTCATGCCTGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027752.15
ENSMUST00000161744.2
3UTR CCA 72 bp ACCAAAACACCCCACCCACCAGCGCCTCGGGCCTGCTaGAGTGGAGTTGACCCAAAGAATGCTGGTGGTGGT +
Preference number: 3 (lower is better)
Translates to: TKTPHPPAPRAC*SGVDPKNAGGG
Trigger: ACCACCACCAGCATTCTTTGGGTCAACTCCACTCCAGCAGGCCCGAGGCGCTGGTGGGTGGGGTGTTTTGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027752.15
ENSMUST00000161744.2
3UTR GCA 72 bp GGCCACACTGGCATAGATCTCTACGGCTTTGTCACCTaGACGCTTGGCTTCCTCATGGACTCGGGCAGCCTG +
Preference number: 3 (lower is better)
Translates to: GHTGIDLYGFVT*TLGFLMDSGSL
Trigger: CAGGCTGCCCGAGTCCATGAGGAAGCCAAGCGTGCAGGTGACAAAGCCGTAGAGATCTATGCCAGTGTGGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163011.2
3UTR TCA 72 bp CGACGTGACCAGGCATGGTACAGGTTCCTGTGCCAGTaGGAGGGACAACTGAGCAGAGACGTGAGCAGACAG +
Preference number: 3 (lower is better)
Translates to: RRDQAWYRFLCQ*EGQLSRDVSRQ
Trigger: CTGTCTGCTCACGTCTCTGCTCAGTTGTCCCTCTCACTGGCACAGGAACCTGTACCATGCCTGGTCACGTCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027752.15
ENSMUST00000161744.2
3UTR TCA 72 bp CTGCCGTGGCACAAAAGGCCTCGGAGGATGCCAAGCTaGGATTTTGTGGCAATCTCCGAGATGGAGACAGGC +
Preference number: 3 (lower is better)
Translates to: LPWHKRPRRMPS*DFVAISEMETG
Trigger: GCCTGTCTCCATCTCGGAGATTGCCACAAAATCTCAGCTTGGCATCCTCCGAGGCCTTTTGTGCCACGGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027752.15
ENSMUST00000161744.2
3UTR GCA 72 bp ACGTTCCTAATCCCTTTACCCTGTCAGCTTGGCTACTaGTCCGGGGCAGGCATGAGAACCTTGAGGAGCTGC +
Preference number: 3 (lower is better)
Translates to: TFLIPLPCQLGY*SGAGMRTLRSC
Trigger: GCAGCTCCTCAAGGTTCTCATGCCTGCCCCGGAGCAGTAGCCAAGCTGACAGGGTAAAGGGATTAGGAACGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027752.15
ENSMUST00000161744.2
3UTR GCA 72 bp GCAGCATCGGCTCGAGCTAGGAGTTGGTCGGCGGTCTaGTGTTCAGCTTTCCCCTTCTCTAGAAGGTTCTTC +
Preference number: 3 (lower is better)
Translates to: AASARARSWSAV*CSAFPFSRRFF
Trigger: GAAGAACCTTCTAGAGAAGGGGAAAGCTGAACAGCAGACCGCCGACCAACTCCTAGCTCGAGCCGATGCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163011.2
3UTR CCA 72 bp TGGCATAGATCTCTACGGCTTTGTCACCTGCACGCTTaGCTTCCTCATGGACTCGGGCAGCCTGCTTCTCCA +
Preference number: 3 (lower is better)
Translates to: WHRSLRLCHLHA*LPHGLGQPASP
Trigger: TGGAGAAGCAGGCTGCCCGAGTCCATGAGGAAGCCAAGCGTGCAGGTGACAAAGCCGTAGAGATCTATGCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163011.2
3UTR TCA 72 bp CAGGAACTAGATGGGGTTGGCAGCCTTGAGAAACACTaGGAGCGGGTGTTTGCCACCAGGACCTGGCAAACA +
Preference number: 3 (lower is better)
Translates to: QELDGVGSLEKH*ERVFATRTWQT
Trigger: TGTTTGCCAGGTCCTGGTGGCAAACACCCGCTCTCAGTGTTTCTCAAGGCTGCCAACCCCATCTAGTTCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
3UTR TCA 72 bp CCACAAAGTGCAGGAACTAGATGGGGTTGGCAGCCTTaGGAAACACTGAGAGCGGGTGTTTGCCACCAGGAC +
Preference number: 3 (lower is better)
Translates to: PQSAGTRWGWQP*ETLRAGVCHQD
Trigger: GTCCTGGTGGCAAACACCCGCTCTCAGTGTTTCTCAAGGCTGCCAACCCCATCTAGTTCCTGCACTTTGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
3UTR-3UTR CAA 90 bp AGAGTCCACAGGGGTCAGCTGGGCCACACTGGCATAGATCTCTACGGCTTTGTCAATCTCCAGCGCAGTTaGATTTTCTCCTGCCAGGGT +
Preference number: 3 (lower is better)
Translates to: RVHRGQLGHTGIDLYGFVNLQRS*IFSCQG
Trigger: ACCCTGGCAGGAGAAAATCAAACTGCGCTGGAGATT...GACAAAGCCGTAGAGATCTATGCCAGTGTGGCCCAGCTGACCCCTGTGGACTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000163011.2
3UTR CCA 72 bp GGATGCCAAGCTGAGATTTTGTGGCAATCTCCGAGATaGAGACAGGCTGAACAGAGCCTCCCCTCTGTCATC +
Preference number: 3 (lower is better)
Translates to: GCQAEILWQSPR*RQAEQSLPSVI
Trigger: GATGACAGAGGGGAGGCTCTGTTCAGCCTGTCTCCATCTCGGAGATTGCCACAAAATCTCAGCTTGGCATCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027752.15
ENSMUST00000161744.2
3UTR-3UTR CAA 90 bp CTCAAGTGTTCAGTCATCACATGCTCCCTTAGAAAACTGACCCGTGTGGGAAGGATGGGGTTGGCAGCCTaGAGAAACACTGAGAGCGGG +
Preference number: 3 (lower is better)
Translates to: LKCSVITCSLRKLTRVGRMGLAA*RNTESG
Trigger: CCCGCTCTCAGTGTTTCTCAAGGCTGCCAACCCCAT...CCTTCCCACACGGGTCAGTTTTCTAAGGGAGCATGTGATGACTGAACACTTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
3UTR-3UTR CAA 90 bp CTTTGTCACCTGCACGCTTGGCTTCCTCATGGACTCGGGCAGCCTGCTTCTCCACCTGAGAGATGTTCTTaGCTTGTTCATACTTCCGGT +
Preference number: 3 (lower is better)
Translates to: LCHLHAWLPHGLGQPASPPERCS*LVHTSG
Trigger: ACCGGAAGTATGAACAAGCAAAGAACATCTCTCAGG...TGGAGAAGCAGGCTGCCCGAGTCCATGAGGAAGCCAAGCGTGCAGGTGACAAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163011.2
3UTR CCA 72 bp CAAACAAACGTTCCTAATCCCTTTACCCTGTCAGCTTaGCTACTGCTCCGGGGCAGGCATGAGAACCTTGAG +
Preference number: 3 (lower is better)
Translates to: QTNVPNPFTLSA*LLLRGRHENLE
Trigger: CTCAAGGTTCTCATGCCTGCCCCGGAGCAGTAGCCAAGCTGACAGGGTAAAGGGATTAGGAACGTTTGTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027752.15
ENSMUST00000161744.2
3UTR-3UTR CAA 90 bp TTGACCCAAAGAATGCTGGTGGTGGTCTGTTTCAGCCATTTTCTTGCAACTGTGCTTTACCCTGTCAGCTaGGCTACTGCTCCGGGGCAG +
Preference number: 3 (lower is better)
Translates to: LTQRMLVVVCFSHFLATVLYPVS*ATAPGQ
Trigger: CTGCCCCGGAGCAGTAGCCAAGCTGACAGGGTAAAG...CACAGTTGCAAGAAAATGGCTGAAACAGACCACCACCAGCATTCTTTGGGTCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027752.15
ENSMUST00000161744.2
3UTR-3UTR CAA 90 bp GCTGGTGGTGGTCTGTTTCAGCCATTTTCTTGCAACTGTGACCAAAATGTTAAGGCAGGCATGAGAACCTaGAGGAGCTGCAGCTCAGAT +
Preference number: 3 (lower is better)
Translates to: AGGGLFQPFSCNCDQNVKAGMRT*RSCSSD
Trigger: ATCTGAGCTGCAGCTCCTCAAGGTTCTCATGCCTGC...CTTAACATTTTGGTCACAGTTGCAAGAAAATGGCTGAAACAGACCACCACCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027752.15
ENSMUST00000161744.2
3UTR CCA 72 bp TTCAAAGAGGAGGCAGAAGATGCAGAGCGGACATACTaGCCATCTCAATGCTACGATGAGGAGCCAAAGATT +
Preference number: 3 (lower is better)
Translates to: FKEEAEDAERTY*PSQCYDEEPKI
Trigger: AATCTTTGGCTCCTCATCGTAGCATTGAGATGGCCAGTATGTCCGCTCTGCATCTTCTGCCTCCTCTTTGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
3UTR TCA 72 bp GTTTGCCACCAGGACCTGGCAAACAACGATGTGCTCTaGAGAGTTCTAGAAAGAACGGAAACATCAGAAGAG +
Preference number: 3 (lower is better)
Translates to: VCHQDLANNDVL*RVLERTETSEE
Trigger: CTCTTCTGATGTTTCCGTTCTTTCTAGAACTCTTCAGAGCACATCGTTGTTTGCCAGGTCCTGGTGGCAAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
3UTR TCA 72 bp TCAAGTGTTCAGTCATCACATGCTCCCTTAGAAAACTaGCCCGTGTGGGAAGGTTCCACAAACAAACGTTCC +
Preference number: 3 (lower is better)
Translates to: SSVQSSHAPLEN*PVWEGSTNKRS
Trigger: GGAACGTTTGTTTGTGGAACCTTCCCACACGGGTCAGTTTTCTAAGGGAGCATGTGATGACTGAACACTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027752.15
ENSMUST00000161744.2
3UTR GCA 72 bp GCAGAAGATGCAGAGCGGACATACTGGCCATCTCAATaGTACGATGAGGAGCCAAAGATTTCCTTCATAGAA +
Preference number: 3 (lower is better)
Translates to: AEDAERTYWPSQ*YDEEPKISFIE
Trigger: TTCTATGAAGGAAATCTTTGGCTCCTCATCGTAGCATTGAGATGGCCAGTATGTCCGCTCTGCATCTTCTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
3UTR TCA 72 bp TGCAGAGCGGACATACTGGCCATCTCAATGCTACGATaGGGAGCCAAAGATTTCCTTCATAGAAACATGAGT +
Preference number: 3 (lower is better)
Translates to: CRADILAISMLR*GAKDFLHRNMS
Trigger: ACTCATGTTTCTATGAAGGAAATCTTTGGCTCCTCATCGTAGCATTGAGATGGCCAGTATGTCCGCTCTGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
3UTR GCA 72 bp AGGATGTTTATTTCCTTTCAAAGAGGAGGCAGAAGATaGAGAGCGGACATACTGGCCATCTCAATGCTACGA +
Preference number: 3 (lower is better)
Translates to: RMFISFQRGGRR*RADILAISMLR
Trigger: TCGTAGCATTGAGATGGCCAGTATGTCCGCTCTGCATCTTCTGCCTCCTCTTTGAAAGGAAATAAACATCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
3UTR GCA 72 bp AAGAATGCTGGTGGTGGTCTGTTTCAGCCATTTTCTTaGAACTGTGACCAAAATGTTAAGGTGGTGAGCTCG +
Preference number: 3 (lower is better)
Translates to: KNAGGGLFQPFS*NCDQNVKVVSS
Trigger: CGAGCTCACCACCTTAACATTTTGGTCACAGTTGCAAGAAAATGGCTGAAACAGACCACCACCAGCATTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027752.15
ENSMUST00000161744.2
3UTR-3UTR CAA 90 bp CGTGTGGGAAGGTTCCACAAACAAACGTTCCTAATCCCTTTACCCTGTCAGCTTATTAGGCAAAACCCTTaGTTCCTGGTTAAAGATGTT +
Preference number: 3 (lower is better)
Translates to: RVGRFHKQTFLIPLPCQLIRQNP*FLVKDV
Trigger: AACATCTTTAACCAGGAACAAAGGGTTTTGCCTAAT...AAGCTGACAGGGTAAAGGGATTAGGAACGTTTGTTTGTGGAACCTTCCCACACG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
3UTR TCA 72 bp CCAGCATGTCTGATGGATGGCCATCACCATTCTAAATaGCCAATACCTTTGGCACAGGATGTTTATTTCCTT +
Preference number: 3 (lower is better)
Translates to: PACLMDGHHHSK*PIPLAQDVYFL
Trigger: AAGGAAATAAACATCCTGTGCCAAAGGTATTGGTCATTTAGAATGGTGATGGCCATCCATCAGACATGCTGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
3UTR TCA 72 bp CCTGAGGATTTGGGAAACATTCATCTTCCTAGTCAATaGAAACAGGAGGAAACCCTAAGCATCTTTGAGCCA +
Preference number: 3 (lower is better)
Translates to: PEDLGNIHLPSQ*KQEETLSIFEP
Trigger: TGGCTCAAAGATGCTTAGGGTTTCCTCCTGTTTTCATTGACTAGGAAGATGAATGTTTCCCAAATCCTCAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
3UTR-3UTR CAA 90 bp TACAGGTTATTGGAACTATACAATAAAGCAATGGCTGTGTCGAAGGAGTGTAATCAGCTGCCTGAGGATTaGGGAAACATTCATCTTCCT +
Preference number: 3 (lower is better)
Translates to: YRLLELYNKAMAVSKECNQLPED*GNIHLP
Trigger: AGGAAGATGAATGTTTCCCAAATCCTCAGGCAGCTG...ATTACACTCCTTCGACACAGCCATTGCTTTATTGTATAGTTCCAATAACCTGTA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR GCA 90 bp GGAAATGCCACGCATGGATCTTCCCTCTCCACACAGAGGAAAGGCTTGGAGTGGTCCGGCATGCAGCGCTaGGGCCGCCCGCCCTCATCC +
Preference number: 4 (lower is better)
Translates to: GNATHGSSLSTQRKGLEWSGMQR*GRPPSS
Trigger: GGATGAGGGCGGGCGGCCGCAGCGCTGCATGCCGGA...CCACTCCAAGCCTTTCCTCTGTGTGGAGAGGGAAGATCCATGCGTGGCATTTCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR GCA 90 bp CCCTGTCAGCTTGGCTACTGCTCCGGGGCAGGCATGAGAACCTTGAGGAGCTGCGTACACAAGGCCTGCTaGTCGTCCCCTCCGGTCCTG +
Preference number: 4 (lower is better)
Translates to: PCQLGYCSGAGMRTLRSCVHKAC*SSPPVL
Trigger: CAGGACCGGAGGGGACGAGCAGCAGGCCTTGTGTAC...GCAGCTCCTCAAGGTTCTCATGCCTGCCCCGGAGCAGTAGCCAAGCTGACAGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR GCA 90 bp GCAGGCATGAGAACCTTGAGGAGCTGCAGCTCAGATGGTCAGAGCCACGGGGAACGTCAGCGGCAGCATTaGCCAGCGCTAGCTGGGCCT +
Preference number: 4 (lower is better)
Translates to: AGMRTLRSCSSDGQSHGERQRQH*PALAGP
Trigger: AGGCCCAGCTAGCGCTGGGCAATGCTGCCGCTGACG...TTCCCCGTGGCTCTGACCATCTGAGCTGCAGCTCCTCAAGGTTCTCATGCCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CCA 90 bp GAGATTTTGTGGCAATCTCCGAGATGGAGACAGGCTGAACAGAGCCTCCCCTCTCCGCGCACTCGTCCATaGCCGCCCGGACACAGCCCG +
Preference number: 4 (lower is better)
Translates to: EILWQSPRWRQAEQSLPSPRTRP*PPGHSP
Trigger: CGGGCTGTGTCCGGGCGGCCATGGACGAGTGCGCGG...AGAGGGGAGGCTCTGTTCAGCCTGTCTCCATCTCGGAGATTGCCACAAAATCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
3UTR CAA 72 bp CAGCTTGGCTACTGCTCCGGGGCAGGCATGAGAACCTaGAGGAGCTGCAGCTCAGATGGTCAGAGCCACGGG +
Preference number: 4 (lower is better)
Translates to: QLGYCSGAGMRT*RSCSSDGQSHG
Trigger: CCCGTGGCTCTGACCATCTGAGCTGCAGCTCCTCAAGGTTCTCATGCCTGCCCCGGAGCAGTAGCCAAGCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027752.15
ENSMUST00000161744.2
3UTR CAA 72 bp CCCACCCACCAGCGCCTCGGGCCTGCTGGAGTGGAGTaGACCCAAAGAATGCTGGTGGTGGTCTGTTTCAGC +
Preference number: 4 (lower is better)
Translates to: PTHQRLGPAGVE*TQRMLVVVCFS
Trigger: GCTGAAACAGACCACCACCAGCATTCTTTGGGTCAACTCCACTCCAGCAGGCCCGAGGCGCTGGTGGGTGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027752.15
ENSMUST00000161744.2
CDS-3UTR GCA 90 bp AGGTTGAGAAGCCCACTAGGAAATGCCACGCATGGATCTTCCCTCTCCACACAGGCCCCGTGTTGCAGGTaGTGCTGGCCGGCGTCGCAC +
Preference number: 4 (lower is better)
Translates to: RLRSPLGNATHGSSLSTQAPCCR*CWPASH
Trigger: GTGCGACGCCGGCCAGCAGCACCTGCAACACGGGGC...CTGTGTGGAGAGGGAAGATCCATGCGTGGCATTTCCTAGTGGGCTTCTCAACCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CCA 90 bp CCCTGTCAGCTTGGCTACTGCTCCGGGGCAGGCATGAGAACCTTGAGGAGCTGCTCACAGTGGTCTCGCTaGGGTAGGAGTTGCCCTGAG +
Preference number: 4 (lower is better)
Translates to: PCQLGYCSGAGMRTLRSCSQWSR*GRSCPE
Trigger: CTCAGGGCAACTCCTACCCCAGCGAGACCACTGTGA...GCAGCTCCTCAAGGTTCTCATGCCTGCCCCGGAGCAGTAGCCAAGCTGACAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CCA 90 bp ATGGGGTTGGCAGCCTTGAGAAACACTGAGAGCGGGTGTTTGCCACCAGGACCTCAGCGCTCACAGTGCTaGCCGGTGATGCCAGGCTGG +
Preference number: 4 (lower is better)
Translates to: MGLAALRNTESGCLPPGPQRSQC*PVMPGW
Trigger: CCAGCCTGGCATCACCGGCCAGCACTGTGAGCGCTG...AGGTCCTGGTGGCAAACACCCGCTCTCAGTGTTTCTCAAGGCTGCCAACCCCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR GCA 90 bp GAGATTTTGTGGCAATCTCCGAGATGGAGACAGGCTGAACAGAGCCTCCCCTCTCCGTGTTGCAGGTGCTaGTGGCCGGCGTCGCACAGG +
Preference number: 4 (lower is better)
Translates to: EILWQSPRWRQAEQSLPSPCCRC*WPASHR
Trigger: CCTGTGCGACGCCGGCCAGCAGCACCTGCAACACGG...AGAGGGGAGGCTCTGTTCAGCCTGTCTCCATCTCGGAGATTGCCACAAAATCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR GCA 90 bp AGCTCAGATGGTCAGAGCCACGGGGAAGAGGGCCCTCTTCGGTCAGGTTGTGGAATCCCACTGGACAGGTaGAGGACTCCACCCACGTTG +
Preference number: 4 (lower is better)
Translates to: SSDGQSHGEEGPLRSGCGIPLDR*RTPPTL
Trigger: CAACGTGGGTGGAGTCCTGCACCTGTCCAGTGGGAT...TCCACAACCTGACCGAAGAGGGCCCTCTTCCCCGTGGCTCTGACCATCTGAGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CCA 90 bp AGCTCAGATGGTCAGAGCCACGGGGAAGAGGGCCCTCTTCGGTCAGGTTGTGGAGGCTTTGCCACCAGGTaGTGTCGGCCTGGTTGTTGT +
Preference number: 4 (lower is better)
Translates to: SSDGQSHGEEGPLRSGCGGFATR*CRPGCC
Trigger: ACAACAACCAGGCCGACACCACCTGGTGGCAAAGCC...TCCACAACCTGACCGAAGAGGGCCCTCTTCCCCGTGGCTCTGACCATCTGAGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CCA 90 bp GCAGGCATGAGAACCTTGAGGAGCTGCAGCTCAGATGGTCAGAGCCACGGGGAACGCTTGGCTTCCTCATaGACTCGGGCAGCCTGCTTC +
Preference number: 4 (lower is better)
Translates to: AGMRTLRSCSSDGQSHGERLASS*TRAACF
Trigger: GAAGCAGGCTGCCCGAGTCCATGAGGAAGCCAAGCG...TTCCCCGTGGCTCTGACCATCTGAGCTGCAGCTCCTCAAGGTTCTCATGCCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR TCA 90 bp GCAGGCATGAGAACCTTGAGGAGCTGCAGCTCAGATGGTCAGAGCCACGGGGAACCCGGTTATAGTCCATaGTGGCTGCCTCCTGCTTCC +
Preference number: 4 (lower is better)
Translates to: AGMRTLRSCSSDGQSHGEPGYSP*WLPPAS
Trigger: GGAAGCAGGAGGCAGCCATCATGGACTATAACCGGG...TTCCCCGTGGCTCTGACCATCTGAGCTGCAGCTCCTCAAGGTTCTCATGCCTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR GCA 90 bp AGCTCAGATGGTCAGAGCCACGGGGAAGAGGGCCCTCTTCGGTCAGGTTGTGGATCACAGGCCCATTGCTaGCCAGAGGGTCTCCAAAGT +
Preference number: 4 (lower is better)
Translates to: SSDGQSHGEEGPLRSGCGSQAHC*PEGLQS
Trigger: ACTTTGGAGACCCTCTGGGCAGCAATGGGCCTGTGA...TCCACAACCTGACCGAAGAGGGCCCTCTTCCCCGTGGCTCTGACCATCTGAGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR GCA 90 bp GGCAGGCATGAGAACCTTGAGGAGCTGCAGCTCAGATGGTCAGAGCCACGGGGACAGCCGTGTTATAGATaGACTTCAGGCACTCGCCCG +
Preference number: 4 (lower is better)
Translates to: GRHENLEELQLRWSEPRGQPCYR*TSGTRP
Trigger: CGGGCGAGTGCCTGAAGTGCATCTATAACACGGCTG...TCCCCGTGGCTCTGACCATCTGAGCTGCAGCTCCTCAAGGTTCTCATGCCTGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR GCA 90 bp TTGGCAGCCTTGAGAAACACTGAGAGCGGGTGTTTGCCACCAGGACCTGGCAAATCACAGCGCTCACAGTaGTGGCCGGTGATGCCAGGC +
Preference number: 4 (lower is better)
Translates to: LAALRNTESGCLPPGPGKSQRSQ*WPVMPG
Trigger: GCCTGGCATCACCGGCCAGCACTGTGAGCGCTGTGA...TTTGCCAGGTCCTGGTGGCAAACACCCGCTCTCAGTGTTTCTCAAGGCTGCCAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR GCA 90 bp GGCAGGCATGAGAACCTTGAGGAGCTGCAGCTCAGATGGTCAGAGCCACGGGGAACTGGTCACAGCGATTaGCCACAAAGCCTTCCCTGC +
Preference number: 4 (lower is better)
Translates to: GRHENLEELQLRWSEPRGTGHSD*PQSLPC
Trigger: GCAGGGAAGGCTTTGTGGGCAATCGCTGTGACCAGT...TCCCCGTGGCTCTGACCATCTGAGCTGCAGCTCCTCAAGGTTCTCATGCCTGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR GCA 90 bp GGCAGGCATGAGAACCTTGAGGAGCTGCAGCTCAGATGGTCAGAGCCACGGGGAATAGTCCATGATGGCTaGCTCCTGCTTCCGAGCCTC +
Preference number: 4 (lower is better)
Translates to: GRHENLEELQLRWSEPRGIVHDG*LLLPSL
Trigger: GAGGCTCGGAAGCAGGAGGCAGCCATCATGGACTAT...TCCCCGTGGCTCTGACCATCTGAGCTGCAGCTCCTCAAGGTTCTCATGCCTGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CCA 90 bp GGAAATGCCACGCATGGATCTTCCCTCTCCACACAGAGGAAAGGCTTGGAGTGGCATGGGCCTTGTTCTTaGCCTCCGTGGCGTCAGCGG +
Preference number: 4 (lower is better)
Translates to: GNATHGSSLSTQRKGLEWHGPCS*PPWRQR
Trigger: CCGCTGACGCCACGGAGGCCAAGAACAAGGCCCATG...CCACTCCAAGCCTTTCCTCTGTGTGGAGAGGGAAGATCCATGCGTGGCATTTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR TCA 90 bp GGTGCGTGCGAGCTGCCCATCCAGACTTTTTATCAGCTGCCTGAGGATTTGGGACCGTCCTTCCAGGGTTaGAAAGGCCACGTTGCCACC +
Preference number: 4 (lower is better)
Translates to: GACELPIQTFYQLPEDLGPSFQG*KGHVAT
Trigger: GGTGGCAACGTGGCCTTTTCAACCCTGGAAGGACGG...TCCCAAATCCTCAGGCAGCTGATAAAAAGTCTGGATGGGCAGCTCGCACGCACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR TCA 90 bp CCCTGTCAGCTTGGCTACTGCTCCGGGGCAGGCATGAGAACCTTGAGGAGCTGCCTGTCCTCAAAGGCTTaGTCTGTCACCATGTCATCC +
Preference number: 4 (lower is better)
Translates to: PCQLGYCSGAGMRTLRSCLSSKA*SVTMSS
Trigger: GGATGACATGGTGACAGATCAAGCCTTTGAGGACAG...GCAGCTCCTCAAGGTTCTCATGCCTGCCCCGGAGCAGTAGCCAAGCTGACAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR TCA 90 bp ATGGGGTTGGCAGCCTTGAGAAACACTGAGAGCGGGTGTTTGCCACCAGGACCTTGGCCTTTCTGGCATTaGGCTCAGCCTCCTGAGCAG +
Preference number: 4 (lower is better)
Translates to: MGLAALRNTESGCLPPGPWPFWH*AQPPEQ
Trigger: CTGCTCAGGAGGCTGAGCTCAATGCCAGAAAGGCCA...AGGTCCTGGTGGCAAACACCCGCTCTCAGTGTTTCTCAAGGCTGCCAACCCCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR GCA 90 bp GAGGAAACCCTAAGCATCTTTGAGCCATGTTCTCCTGGGGACCCACATGTAACTAAGGCTGCCCCGTGTTaGAGGTGCTGCTGGCCGGCG +
Preference number: 4 (lower is better)
Translates to: EETLSIFEPCSPGDPHVTKAAPC*RCCWPA
Trigger: CGCCGGCCAGCAGCACCTGCAACACGGGGCAGCCTT...AGTTACATGTGGGTCCCCAGGAGAACATGGCTCAAAGATGCTTAGGGTTTCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CCA 90 bp AGGTTGAGAAGCCCACTAGGAAATGCCACGCATGGATCTTCCCTCTCCACACAGAAGGAAGGCACTCGCTaGCGCTCTCAGCAGTCGCCC +
Preference number: 4 (lower is better)
Translates to: RLRSPLGNATHGSSLSTQKEGTR*RSQQSP
Trigger: GGGCGACTGCTGAGAGCGCCAGCGAGTGCCTTCCTT...CTGTGTGGAGAGGGAAGATCCATGCGTGGCATTTCCTAGTGGGCTTCTCAACCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CCA 90 bp CTACTGCTCCGGGGCAGGCATGAGAACCTTGAGGAGCTGCAGCTCAGATGGTCAGTCACCCATCACTCCTaGCTTACAGCTGCATCTGCC +
Preference number: 4 (lower is better)
Translates to: LLLRGRHENLEELQLRWSVTHHS*LTAASA
Trigger: GGCAGATGCAGCTGTAAGCCAGGAGTGATGGGTGAC...TGACCATCTGAGCTGCAGCTCCTCAAGGTTCTCATGCCTGCCCCGGAGCAGTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CCA 90 bp TTGGCAGCCTTGAGAAACACTGAGAGCGGGTGTTTGCCACCAGGACCTGGCAAATCCCCCGTATCCCACTaGACAGGTGCAGGACTCCAC +
Preference number: 4 (lower is better)
Translates to: LAALRNTESGCLPPGPGKSPVSH*TGAGLH
Trigger: GTGGAGTCCTGCACCTGTCCAGTGGGATACGGGGGA...TTTGCCAGGTCCTGGTGGCAAACACCCGCTCTCAGTGTTTCTCAAGGCTGCCAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CCA 90 bp CCCTGTCAGCTTGGCTACTGCTCCGGGGCAGGCATGAGAACCTTGAGGAGCTGCTTGTCTTTGGGACAATaGCACAACTTGAGCCACCGG +
Preference number: 4 (lower is better)
Translates to: PCQLGYCSGAGMRTLRSCLSLGQ*HNLSHR
Trigger: CCGGTGGCTCAAGTTGTGCCATTGTCCCAAAGACAA...GCAGCTCCTCAAGGTTCTCATGCCTGCCCCGGAGCAGTAGCCAAGCTGACAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CCA 90 bp CCCTGTCAGCTTGGCTACTGCTCCGGGGCAGGCATGAGAACCTTGAGGAGCTGCCCCTTGTCTTCTCATTaGCTTCAGCTATGGTCCGGT +
Preference number: 4 (lower is better)
Translates to: PCQLGYCSGAGMRTLRSCPLSSH*LQLWSG
Trigger: ACCGGACCATAGCTGAAGCCAATGAGAAGACAAGGG...GCAGCTCCTCAAGGTTCTCATGCCTGCCCCGGAGCAGTAGCCAAGCTGACAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR TCA 90 bp GCAGGCATGAGAACCTTGAGGAGCTGCAGCTCAGATGGTCAGAGCCACGGGGAAGAATGGAACCCAGGCTaGCAACGGTCACACTTGTCA +
Preference number: 4 (lower is better)
Translates to: AGMRTLRSCSSDGQSHGEEWNPG*QRSHLS
Trigger: TGACAAGTGTGACCGTTGTCAGCCTGGGTTCCATTC...TTCCCCGTGGCTCTGACCATCTGAGCTGCAGCTCCTCAAGGTTCTCATGCCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR TCA 90 bp AACAATCTGTTCTGTGCGGCACCCCGCATTCTACAGCAGCCATTCTGTCCATTTCACAGTGCTGGCCGGTaGTGCCAGGCTGGCACTCAC +
Preference number: 4 (lower is better)
Translates to: NNLFCAAPRILQQPFCPFHSAGR*CQAGTH
Trigger: GTGAGTGCCAGCCTGGCATCACCGGCCAGCACTGTG...AAATGGACAGAATGGCTGCTGTAGAATGCGGGGTGCCGCACAGAACAGATTGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR TCA 90 bp AGCTCAGATGGTCAGAGCCACGGGGAAGAGGGCCCTCTTCGGTCAGGTTGTGGAAGCCTTCGATCTCATTaGGCTTGTTCAGGTCCACTG +
Preference number: 4 (lower is better)
Translates to: SSDGQSHGEEGPLRSGCGSLRSH*ACSGPL
Trigger: CAGTGGACCTGAACAAGCTCAATGAGATCGAAGGCT...TCCACAACCTGACCGAAGAGGGCCCTCTTCCCCGTGGCTCTGACCATCTGAGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR TCA 90 bp CCCTGTCAGCTTGGCTACTGCTCCGGGGCAGGCATGAGAACCTTGAGGAGCTGCTTGGTAGGGTCTTCTTaGTGTCCTCCAGGTTGTGAA +
Preference number: 4 (lower is better)
Translates to: PCQLGYCSGAGMRTLRSCLVGSS*CPPGCE
Trigger: TTCACAACCTGGAGGACATCAAGAAGACCCTACCAA...GCAGCTCCTCAAGGTTCTCATGCCTGCCCCGGAGCAGTAGCCAAGCTGACAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR GCA 90 bp AACAATCTGTTCTGTGCGGCACCCCGCATTCTACAGCAGCCATTCTGTCCATTTCCGGTCACCCCAGTCTaGACGCAGTACTCCTCGGGC +
Preference number: 4 (lower is better)
Translates to: NNLFCAAPRILQQPFCPFPVTPV*TQYSSG
Trigger: GCCCGAGGAGTACTGCGTGCAGACTGGGGTGACCGG...AAATGGACAGAATGGCTGCTGTAGAATGCGGGGTGCCGCACAGAACAGATTGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR GCA 90 bp GGGATAAAACAATCTGTTCTGTGCGGCACCCCGCATTCTACAGCAGCCATTCTGGTCGGTCAGGAAGGCTaGCCCGTGTTGCAGGTGCTG +
Preference number: 4 (lower is better)
Translates to: GIKQSVLCGTPHSTAAILVGQEG*PVLQVL
Trigger: CAGCACCTGCAACACGGGGCAGCCTTCCTGACCGAC...CAGAATGGCTGCTGTAGAATGCGGGGTGCCGCACAGAACAGATTGTTTTATCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR GCA 90 bp AGGTTGAGAAGCCCACTAGGAAATGCCACGCATGGATCTTCCCTCTCCACACAGTCAGTACACAAGGCCTaGTGCTCGTCCCCTCCGGTC +
Preference number: 4 (lower is better)
Translates to: RLRSPLGNATHGSSLSTQSVHKA*CSSPPV
Trigger: GACCGGAGGGGACGAGCAGCAGGCCTTGTGTACTGA...CTGTGTGGAGAGGGAAGATCCATGCGTGGCATTTCCTAGTGGGCTTCTCAACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR GCA 90 bp GGGATAAAACAATCTGTTCTGTGCGGCACCCCGCATTCTACAGCAGCCATTCTGTCCGAGCCATCTCTCTaGTCCACGCGCCACCCATCC +
Preference number: 4 (lower is better)
Translates to: GIKQSVLCGTPHSTAAILSEPSL*STRHPS
Trigger: GGATGGGTGGCGCGTGGAGCAGAGAGATGGCTCGGA...CAGAATGGCTGCTGTAGAATGCGGGGTGCCGCACAGAACAGATTGTTTTATCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR GCA 90 bp CCCTGTCAGCTTGGCTACTGCTCCGGGGCAGGCATGAGAACCTTGAGGAGCTGCCCAAGGGTAATCCGTTaGTTCATGGAGCCTGAAGAT +
Preference number: 4 (lower is better)
Translates to: PCQLGYCSGAGMRTLRSCPRVIR*FMEPED
Trigger: ATCTTCAGGCTCCATGAAGCAACGGATTACCCTTGG...GCAGCTCCTCAAGGTTCTCATGCCTGCCCCGGAGCAGTAGCCAAGCTGACAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR GCA 90 bp TTGGCAGCCTTGAGAAACACTGAGAGCGGGTGTTTGCCACCAGGACCTGGCAAACTGGTGGCATTCTTCTaGACGGCGCTGGCAATCCTC +
Preference number: 4 (lower is better)
Translates to: LAALRNTESGCLPPGPGKLVAFF*TALAIL
Trigger: GAGGATTGCCAGCGCCGTGCAGAAGAATGCCACCAG...TTTGCCAGGTCCTGGTGGCAAACACCCGCTCTCAGTGTTTCTCAAGGCTGCCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CCA 90 bp CTACTGCTCCGGGGCAGGCATGAGAACCTTGAGGAGCTGCAGCTCAGATGGTCAGCAGTTACCCATTCCTaGAGCACAGGGCTGTTGTCA +
Preference number: 4 (lower is better)
Translates to: LLLRGRHENLEELQLRWSAVTHS*STGLLS
Trigger: TGACAACAGCCCTGTGCTCCAGGAATGGGTAACTGC...TGACCATCTGAGCTGCAGCTCCTCAAGGTTCTCATGCCTGCCCCGGAGCAGTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CCA 90 bp GAGATTTTGTGGCAATCTCCGAGATGGAGACAGGCTGAACAGAGCCTCCCCTCTCCAACAGGGCTGCAGTaGCACGGAGAGCAGGCTTCA +
Preference number: 4 (lower is better)
Translates to: EILWQSPRWRQAEQSLPSPTGLQ*HGEQAS
Trigger: TGAAGCCTGCTCTCCGTGCCACTGCAGCCCTGTTGG...AGAGGGGAGGCTCTGTTCAGCCTGTCTCCATCTCGGAGATTGCCACAAAATCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CCA 90 bp GATGCCCTCAAGTGTTCAGTCATCACATGCTCCCTTAGAAAACTGACCCGTGTGGGGCAGGGACAAGGCTaGCAGTCAGAGGAGGTGCCC +
Preference number: 4 (lower is better)
Translates to: DALKCSVITCSLRKLTRVGQGQG*QSEEVP
Trigger: GGGCACCTCCTCTGACTGCCAGCCTTGTCCCTGCCC...CACACGGGTCAGTTTTCTAAGGGAGCATGTGATGACTGAACACTTGAGGGCATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CCA 90 bp GGTGCTGATGCCCTCAAGTGTTCAGTCATCACATGCTCCCTTAGAAAACTGACCCAAGCCGGACACTCCTaGCAGCCAGGCCAGGACCGA +
Preference number: 4 (lower is better)
Translates to: GADALKCSVITCSLRKLTQAGHS*QPGQDR
Trigger: TCGGTCCTGGCCTGGCTGCCAGGAGTGTCCGGCTTG...GGTCAGTTTTCTAAGGGAGCATGTGATGACTGAACACTTGAGGGCATCAGCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CCA 90 bp GGCAGGCATGAGAACCTTGAGGAGCTGCAGCTCAGATGGTCAGAGCCACGGGGACAGCTGAAGTCTCGTTaGCTGTCTTTGCCACTCGTA +
Preference number: 4 (lower is better)
Translates to: GRHENLEELQLRWSEPRGQLKSR*LSLPLV
Trigger: TACGAGTGGCAAAGACAGCCAACGAGACTTCAGCTG...TCCCCGTGGCTCTGACCATCTGAGCTGCAGCTCCTCAAGGTTCTCATGCCTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CCA 90 bp GGAAATGCCACGCATGGATCTTCCCTCTCCACACAGAGGAAAGGCTTGGAGTGGTGTCACCTGCACGCTTaGCTTCCTCATGGACTCGGG +
Preference number: 4 (lower is better)
Translates to: GNATHGSSLSTQRKGLEWCHLHA*LPHGLG
Trigger: CCCGAGTCCATGAGGAAGCCAAGCGTGCAGGTGACA...CCACTCCAAGCCTTTCCTCTGTGTGGAGAGGGAAGATCCATGCGTGGCATTTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR TCA 90 bp GATGCCCTCAAGTGTTCAGTCATCACATGCTCCCTTAGAAAACTGACCCGTGTGCCGGCGTCGCACAGGTaGCAGGACTTAGTGACTCCG +
Preference number: 4 (lower is better)
Translates to: DALKCSVITCSLRKLTRVPASHR*QDLVTP
Trigger: CGGAGTCACTAAGTCCTGTCACCTGTGCGACGCCGG...CACACGGGTCAGTTTTCTAAGGGAGCATGTGATGACTGAACACTTGAGGGCATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR GCA 90 bp GCTTTGTCACCTGCACGCTTGGCTTCCTCATGGACTCGGGCAGCCTGCTTCTCCTGTCACCTCCCTTTCTaGTTCCTTAAGTCTGTCCTC +
Preference number: 4 (lower is better)
Translates to: ALSPARLASSWTRAACFSCHLPF*FLKSVL
Trigger: GAGGACAGACTTAAGGAAGCAGAAAGGGAGGTGACA...GGAGAAGCAGGCTGCCCGAGTCCATGAGGAAGCCAAGCGTGCAGGTGACAAAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163011.2
CDS-3UTR GCA 90 bp ACCTGCACGCTTGGCTTCCTCATGGACTCGGGCAGCCTGCTTCTCCAGGTCCTGCGGCTAATTTGGCTATaGAGGCTGCTATTTACTCTC +
Preference number: 4 (lower is better)
Translates to: TCTLGFLMDSGSLLLQVLRLIWL*RLLFTL
Trigger: GAGAGTAAATAGCAGCCTGCATAGCCAAATTAGCCG...CAGGACCTGGAGAAGCAGGCTGCCCGAGTCCATGAGGAAGCCAAGCGTGCAGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163011.2
CDS-3UTR GCA 90 bp TTGGCAGCCTTGAGAAACACTGAGAGCGGGTGTTTGCCACCAGGACCTGGCAAATCTGCCTCCTCCAGCTaGCTCAGCATACCATTCACC +
Preference number: 4 (lower is better)
Translates to: LAALRNTESGCLPPGPGKSASSS*LSIPFT
Trigger: GGTGAATGGTATGCTGAGGCAGCTGGAGGAGGCAGA...TTTGCCAGGTCCTGGTGGCAAACACCCGCTCTCAGTGTTTCTCAAGGCTGCCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR TCA 90 bp GGGATAAAACAATCTGTTCTGTGCGGCACCCCGCATTCTACAGCAGCCATTCTGTGCATCCTGCCTCAGTaGGGGAATGGAACCCAGGCT +
Preference number: 4 (lower is better)
Translates to: GIKQSVLCGTPHSTAAILCILPQ*GNGTQA
Trigger: AGCCTGGGTTCCATTCCCTCACTGAGGCAGGATGCA...CAGAATGGCTGCTGTAGAATGCGGGGTGCCGCACAGAACAGATTGTTTTATCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR TCA 90 bp GCAGGCATGAGAACCTTGAGGAGCTGCAGCTCAGATGGTCAGAGCCACGGGGAACCATCCTCATCAATCTaGAAGGTGGAGGAGATGTCA +
Preference number: 4 (lower is better)
Translates to: AGMRTLRSCSSDGQSHGEPSSSI*KVEEMS
Trigger: TGACATCTCCTCCACCTTTCAGATTGATGAGGATGG...TTCCCCGTGGCTCTGACCATCTGAGCTGCAGCTCCTCAAGGTTCTCATGCCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR TCA 90 bp CAGAGGAAAGGCTTGGAGTGGGCAGAGCCACAAAGTGCAGGAACTAGATGGGGTAATATCTTGCCTGTCTaGGGACCACTCCAGAGACGC +
Preference number: 4 (lower is better)
Translates to: QRKGLEWAEPQSAGTRWGNILPV*GPLQRR
Trigger: GCGTCTCTGGAGTGGTCCTCAGACAGGCAAGATATT...ACCCCATCTAGTTCCTGCACTTTGTGGCTCTGCCCACTCCAAGCCTTTCCTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR TCA 90 bp GGTGCTGATGCCCTCAAGTGTTCAGTCATCACATGCTCCCTTAGAAAACTGACCGACAATGGCACAACTTaGGCCACCGGGGCAGGGACA +
Preference number: 4 (lower is better)
Translates to: GADALKCSVITCSLRKLTDNGTT*ATGAGT
Trigger: TGTCCCTGCCCCGGTGGCTCAAGTTGTGCCATTGTC...GGTCAGTTTTCTAAGGGAGCATGTGATGACTGAACACTTGAGGGCATCAGCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR TCA 90 bp GATGCCCTCAAGTGTTCAGTCATCACATGCTCCCTTAGAAAACTGACCCGTGTGTTGAGCTCAGCCTCCTaGGCAGCCTGCGAAGCCATC +
Preference number: 4 (lower is better)
Translates to: DALKCSVITCSLRKLTRVLSSAS*AACEAI
Trigger: GATGGCTTCGCAGGCTGCTCAGGAGGCTGAGCTCAA...CACACGGGTCAGTTTTCTAAGGGAGCATGTGATGACTGAACACTTGAGGGCATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR GCA 90 bp GGGATAAAACAATCTGTTCTGTGCGGCACCCCGCATTCTACAGCAGCCATTCTGGCCCGTCTTCCCGAGTaGGCTTATAGATGGCGAAGC +
Preference number: 4 (lower is better)
Translates to: GIKQSVLCGTPHSTAAILARLPE*AYRWRS
Trigger: GCTTCGCCATCTATAAGCGCACTCGGGAAGACGGGC...CAGAATGGCTGCTGTAGAATGCGGGGTGCCGCACAGAACAGATTGTTTTATCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CCA 90 bp AACAATCTGTTCTGTGCGGCACCCCGCATTCTACAGCAGCCATTCTGTCCATTTCCGGCCAGCATAGTCTaGCTTTGCCACCAGGTGGTG +
Preference number: 4 (lower is better)
Translates to: NNLFCAAPRILQQPFCPFPASIV*LCHQVV
Trigger: CACCACCTGGTGGCAAAGCCAGACTATGCTGGCCGG...AAATGGACAGAATGGCTGCTGTAGAATGCGGGGTGCCGCACAGAACAGATTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CCA 90 bp ATGGGGTTGGCAGCCTTGAGAAACACTGAGAGCGGGTGTTTGCCACCAGGACCTAGATGTACTTCACAGTaGTCTCGCTGGGGTAGGAGT +
Preference number: 4 (lower is better)
Translates to: MGLAALRNTESGCLPPGPRCTSQ*SRWGRS
Trigger: ACTCCTACCCCAGCGAGACCACTGTGAAGTACATCT...AGGTCCTGGTGGCAAACACCCGCTCTCAGTGTTTCTCAAGGCTGCCAACCCCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CCA 90 bp CTCAAGTGTTCAGTCATCACATGCTCCCTTAGAAAACTGACCCGTGTGGGAAGGTGTTCTTGGCCTCCGTaGCGTCAGCGGCAGCATTGC +
Preference number: 4 (lower is better)
Translates to: LKCSVITCSLRKLTRVGRCSWPP*RQRQHC
Trigger: GCAATGCTGCCGCTGACGCCACGGAGGCCAAGAACA...CCTTCCCACACGGGTCAGTTTTCTAAGGGAGCATGTGATGACTGAACACTTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
3UTR CAA 72 bp GGCACAAAAGGCCTCGGAGGATGCCAAGCTGAGATTTaGTGGCAATCTCCGAGATGGAGACAGGCTGAACAG +
Preference number: 4 (lower is better)
Translates to: GTKGLGGCQAEI*WQSPRWRQAEQ
Trigger: CTGTTCAGCCTGTCTCCATCTCGGAGATTGCCACAAAATCTCAGCTTGGCATCCTCCGAGGCCTTTTGTGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027752.15
ENSMUST00000161744.2
CDS-3UTR TCA 90 bp GAGATTTTGTGGCAATCTCCGAGATGGAGACAGGCTGAACAGAGCCTCCCCTCTGCCACGGTTAGCCTTTaGGTACGTGTTCTCACAGGA +
Preference number: 4 (lower is better)
Translates to: EILWQSPRWRQAEQSLPSATVSL*VRVLTG
Trigger: TCCTGTGAGAACACGTACTCAAAGGCTAACCGTGGC...AGAGGGGAGGCTCTGTTCAGCCTGTCTCCATCTCGGAGATTGCCACAAAATCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR TCA 90 bp AAGAGGAGGCAGAAGATGCAGAGCGGACATACTGGCCATCTCAATGCTACGATGTGTCACACTGTGTGCTaGGAGAACCAACAGGGCTGC +
Preference number: 4 (lower is better)
Translates to: KRRQKMQSGHTGHLNATMCHTVC*ENQQGC
Trigger: GCAGCCCTGTTGGTTCTCTCAGCACACAGTGTGACA...CATCGTAGCATTGAGATGGCCAGTATGTCCGCTCTGCATCTTCTGCCTCCTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR TCA 90 bp ATGGGGTTGGCAGCCTTGAGAAACACTGAGAGCGGGTGTTTGCCACCAGGACCTTTGCTTCATGGAGCCTaGAGATGTACTTCACAGTGG +
Preference number: 4 (lower is better)
Translates to: MGLAALRNTESGCLPPGPLLHGA*RCTSQW
Trigger: CCACTGTGAAGTACATCTTCAGGCTCCATGAAGCAA...AGGTCCTGGTGGCAAACACCCGCTCTCAGTGTTTCTCAAGGCTGCCAACCCCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR GCA 90 bp AACAATCTGTTCTGTGCGGCACCCCGCATTCTACAGCAGCCATTCTGTCCATTTAGCATAGTCTGGCTTTaGCACCAGGTGGTGTCGGCC +
Preference number: 4 (lower is better)
Translates to: NNLFCAAPRILQQPFCPFSIVWL*HQVVSA
Trigger: GGCCGACACCACCTGGTGGCAAAGCCAGACTATGCT...AAATGGACAGAATGGCTGCTGTAGAATGCGGGGTGCCGCACAGAACAGATTGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR GCA 90 bp AAGATGCAGAGCGGACATACTGGCCATCTCAATGCTACGATGAGGAGCCAAAGAATGGAGTTGGGGTACTaGACCCCGGCCAGCATAGTC +
Preference number: 4 (lower is better)
Translates to: KMQSGHTGHLNATMRSQRMELGY*TPASIV
Trigger: GACTATGCTGGCCGGGGTGCAGTACCCCAACTCCAT...TCTTTGGCTCCTCATCGTAGCATTGAGATGGCCAGTATGTCCGCTCTGCATCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR GCA 90 bp AGGTTGAGAAGCCCACTAGGAAATGCCACGCATGGATCTTCCCTCTCCACACAGCTCCTGGCTTACAGCTaGATCTGCCGTAACTGTCAC +
Preference number: 4 (lower is better)
Translates to: RLRSPLGNATHGSSLSTQLLAYS*ICRNCH
Trigger: GTGACAGTTACGGCAGATGCAGCTGTAAGCCAGGAG...CTGTGTGGAGAGGGAAGATCCATGCGTGGCATTTCCTAGTGGGCTTCTCAACCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR GCA 90 bp GAGATTTTGTGGCAATCTCCGAGATGGAGACAGGCTGAACAGAGCCTCCCCTCTGTGCGGATGTCACACTaGCCATTGGTGGAACCCAAA +
Preference number: 4 (lower is better)
Translates to: EILWQSPRWRQAEQSLPSVRMSH*PLVEPK
Trigger: TTTGGGTTCCACCAATGGGCAGTGTGACATCCGCAC...AGAGGGGAGGCTCTGTTCAGCCTGTCTCCATCTCGGAGATTGCCACAAAATCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CCA 90 bp AAGAGGAGGCAGAAGATGCAGAGCGGACATACTGGCCATCTCAATGCTACGATGCGGCAGTTGGTACAGTaGCCACCATGTCCAGTGGAA +
Preference number: 4 (lower is better)
Translates to: KRRQKMQSGHTGHLNATMRQLVQ*PPCPVE
Trigger: TTCCACTGGACATGGTGGCCACTGTACCAACTGCCG...CATCGTAGCATTGAGATGGCCAGTATGTCCGCTCTGCATCTTCTGCCTCCTCTT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CCA 90 bp CTAGGAGTTGGTCGGCGGTCTGCTGTTCAGCTTTCCCCTTCTCTAGAAGGTTCTGAGGGTCATGTTGTTTaGCTCCCCTGTAGACTCTGG +
Preference number: 4 (lower is better)
Translates to: LGVGRRSAVQLSPSLEGSEGHVV*LPCRLW
Trigger: CCAGAGTCTACAGGGGAGCCAAACAACATGACCCTC...AGAACCTTCTAGAGAAGGGGAAAGCTGAACAGCAGACCGCCGACCAACTCCTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000163011.2
CDS-3UTR TCA 90 bp GCAGGCATGAGAACCTTGAGGAGCTGCAGCTCAGATGGTCAGAGCCACGGGGAACTGCTATTTACTCTCTaGAGGCGATCCATCAGATTT +
Preference number: 4 (lower is better)
Translates to: AGMRTLRSCSSDGQSHGELLFTL*RRSIRF
Trigger: AAATCTGATGGATCGCCTTCAGAGAGTAAATAGCAG...TTCCCCGTGGCTCTGACCATCTGAGCTGCAGCTCCTCAAGGTTCTCATGCCTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR GCA 90 bp AAGAGGAGGCAGAAGATGCAGAGCGGACATACTGGCCATCTCAATGCTACGATGCTTGGGATCGGCCATTaGAGTCACAAGGAAGGCACT +
Preference number: 4 (lower is better)
Translates to: KRRQKMQSGHTGHLNATMLGIGH*SHKEGT
Trigger: AGTGCCTTCCTTGTGACTGCAATGGCCGATCCCAAG...CATCGTAGCATTGAGATGGCCAGTATGTCCGCTCTGCATCTTCTGCCTCCTCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR GCA 90 bp CTCAAGTGTTCAGTCATCACATGCTCCCTTAGAAAACTGACCCGTGTGGGAAGGGCATGGCCTGCATCCTaGCTCAGTGAGGGAATGGAA +
Preference number: 4 (lower is better)
Translates to: LKCSVITCSLRKLTRVGRAWPAS*LSEGME
Trigger: TTCCATTCCCTCACTGAGGCAGGATGCAGGCCATGC...CCTTCCCACACGGGTCAGTTTTCTAAGGGAGCATGTGATGACTGAACACTTGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR GCA 90 bp GGAAATGCCACGCATGGATCTTCCCTCTCCACACAGAGGAAAGGCTTGGAGTGGATTACGGCAATATCTTaGCTGTCTGAGGACCACTCC +
Preference number: 4 (lower is better)
Translates to: GNATHGSSLSTQRKGLEWITAIS*LSEDHS
Trigger: GGAGTGGTCCTCAGACAGGCAAGATATTGCCGTAAT...CCACTCCAAGCCTTTCCTCTGTGTGGAGAGGGAAGATCCATGCGTGGCATTTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR GCA 90 bp AAGATGCAGAGCGGACATACTGGCCATCTCAATGCTACGATGAGGAGCCAAAGAAACTCAGGACCTGGTTaGCCAGGAACTTCACAGGGG +
Preference number: 4 (lower is better)
Translates to: KMQSGHTGHLNATMRSQRNSGPG*PGTSQG
Trigger: CCCCTGTGAAGTTCCTGGGCAACCAGGTCCTGAGTT...TCTTTGGCTCCTCATCGTAGCATTGAGATGGCCAGTATGTCCGCTCTGCATCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR GCA 90 bp CTCAAGTGTTCAGTCATCACATGCTCCCTTAGAAAACTGACCCGTGTGGGAAGGCTTCAGCTCATTCTCTaGCTCCTCCAGCTGCCTCAG +
Preference number: 4 (lower is better)
Translates to: LKCSVITCSLRKLTRVGRLQLIL*LLQLPQ
Trigger: CTGAGGCAGCTGGAGGAGGCAGAGAATGAGCTGAAG...CCTTCCCACACGGGTCAGTTTTCTAAGGGAGCATGTGATGACTGAACACTTGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR GCA 90 bp GAGGAAACCCTAAGCATCTTTGAGCCATGTTCTCCTGGGGACCCACATGTAACTCTGCGAAGCCATCCCTaGCATCATCATGTCCTGGTC +
Preference number: 4 (lower is better)
Translates to: EETLSIFEPCSPGDPHVTLRSHP*HHHVLV
Trigger: GACCAGGACATGATGATGGCAGGGATGGCTTCGCAG...AGTTACATGTGGGTCCCCAGGAGAACATGGCTCAAAGATGCTTAGGGTTTCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CCA 90 bp AGCTCAGATGGTCAGAGCCACGGGGAAGAGGGCCCTCTTCGGTCAGGTTGTGGACATCAATCTGAAAGGTaGAGGAGATGTCATAAACAC +
Preference number: 4 (lower is better)
Translates to: SSDGQSHGEEGPLRSGCGHQSER*RRCHKH
Trigger: GTGTTTATGACATCTCCTCCACCTTTCAGATTGATG...TCCACAACCTGACCGAAGAGGGCCCTCTTCCCCGTGGCTCTGACCATCTGAGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CCA 90 bp AGGTTGAGAAGCCCACTAGGAAATGCCACGCATGGATCTTCCCTCTCCACACAGTTCTCTTCTGTACCCTaGGAGGCACGTCTCACAGAA +
Preference number: 4 (lower is better)
Translates to: RLRSPLGNATHGSSLSTQFSSVP*EARLTE
Trigger: TTCTGTGAGACGTGCCTCCCAGGGTACAGAAGAGAA...CTGTGTGGAGAGGGAAGATCCATGCGTGGCATTTCCTAGTGGGCTTCTCAACCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CCA 90 bp GGTGCTGATGCCCTCAAGTGTTCAGTCATCACATGCTCCCTTAGAAAACTGACCGTGGAACCCAAAGCATaGCAGTCACACCTCTCGCAG +
Preference number: 4 (lower is better)
Translates to: GADALKCSVITCSLRKLTVEPKA*QSHLSQ
Trigger: CTGCGAGAGGTGTGACTGCCATGCTTTGGGTTCCAC...GGTCAGTTTTCTAAGGGAGCATGTGATGACTGAACACTTGAGGGCATCAGCACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR TCA 90 bp AGATCTCTACGGCTTTGTCACCTGCACGCTTGGCTTCCTCATGGACTCGGGCAGCTGCTATTTACTCTCTaGAGGCGATCCATCAGATTT +
Preference number: 4 (lower is better)
Translates to: RSLRLCHLHAWLPHGLGQLLFTL*RRSIRF
Trigger: AAATCTGATGGATCGCCTTCAGAGAGTAAATAGCAG...CTGCCCGAGTCCATGAGGAAGCCAAGCGTGCAGGTGACAAAGCCGTAGAGATCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163011.2
CDS-3UTR TCA 90 bp AAGATGCAGAGCGGACATACTGGCCATCTCAATGCTACGATGAGGAGCCAAAGATCCAGCTGTCCTAGCTaGTCCAAGAGGTTGTTCAGC +
Preference number: 4 (lower is better)
Translates to: KMQSGHTGHLNATMRSQRSSCPS*SKRLFS
Trigger: GCTGAACAACCTCTTGGATCAGCTAGGACAGCTGGA...TCTTTGGCTCCTCATCGTAGCATTGAGATGGCCAGTATGTCCGCTCTGCATCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR GCA 90 bp CTCAAGTGTTCAGTCATCACATGCTCCCTTAGAAAACTGACCCGTGTGGGAAGGAAAGCCTTTCCCAGGTaGAGCGTGAGGTTGATGGAG +
Preference number: 4 (lower is better)
Translates to: LKCSVITCSLRKLTRVGRKAFPR*SVRLME
Trigger: CTCCATCAACCTCACGCTGCACCTGGGAAAGGCTTT...CCTTCCCACACGGGTCAGTTTTCTAAGGGAGCATGTGATGACTGAACACTTGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR GCA 90 bp AAGATGCAGAGCGGACATACTGGCCATCTCAATGCTACGATGAGGAGCCAAAGACCAGGGCGAGCACTTTaGAAGGTGACATCATCCAAG +
Preference number: 4 (lower is better)
Translates to: KMQSGHTGHLNATMRSQRPGRAL*KVTSSK
Trigger: CTTGGATGATGTCACCTTGCAAAGTGCTCGCCCTGG...TCTTTGGCTCCTCATCGTAGCATTGAGATGGCCAGTATGTCCGCTCTGCATCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR GCA 90 bp AAGAGGAGGCAGAAGATGCAGAGCGGACATACTGGCCATCTCAATGCTACGATGTCACAGGTCTCACTGTaGCCATTACAGGTACAGAGC +
Preference number: 4 (lower is better)
Translates to: KRRQKMQSGHTGHLNATMSQVSL*PLQVQS
Trigger: GCTCTGTACCTGTAATGGGCACAGTGAGACCTGTGA...CATCGTAGCATTGAGATGGCCAGTATGTCCGCTCTGCATCTTCTGCCTCCTCTT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR GCA 90 bp GGGATAAAACAATCTGTTCTGTGCGGCACCCCGCATTCTACAGCAGCCATTCTGGACAGTCACAAGGTTTaGAGCCTTCAGGTCCAAACC +
Preference number: 4 (lower is better)
Translates to: GIKQSVLCGTPHSTAAILDSHKV*SLQVQT
Trigger: GGTTTGGACCTGAAGGCTGCAAACCTTGTGACTGTC...CAGAATGGCTGCTGTAGAATGCGGGGTGCCGCACAGAACAGATTGTTTTATCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR GCA 90 bp CGAGCTAGGAGTTGGTCGGCGGTCTGCTGTTCAGCTTTCCCCTTCTCTAGAAGGGTATTCCGGATATTCTaGAGTCGGCTAATTTGGCTA +
Preference number: 4 (lower is better)
Translates to: RARSWSAVCCSAFPFSRRVFRIF*SRLIWL
Trigger: TAGCCAAATTAGCCGACTGCAGAATATCCGGAATAC...CCTTCTAGAGAAGGGGAAAGCTGAACAGCAGACCGCCGACCAACTCCTAGCTCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163011.2
CDS-3UTR GCA 90 bp GAGATTTTGTGGCAATCTCCGAGATGGAGACAGGCTGAACAGAGCCTCCCCTCTCTCGTTGGCTGTCTTTaGCACTCGTACAATGTCATC +
Preference number: 4 (lower is better)
Translates to: EILWQSPRWRQAEQSLPSLVGCL*HSYNVI
Trigger: GATGACATTGTACGAGTGGCAAAGACAGCCAACGAG...AGAGGGGAGGCTCTGTTCAGCCTGTCTCCATCTCGGAGATTGCCACAAAATCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CCA 90 bp GTGGAGTTGACCCAAAGAATGCTGGTGGTGGTCTGTTTCAGCCATTTTCTTGCAGATGGCGAAGCTCTCTaGACGGCTGGTGTGGAACTT +
Preference number: 4 (lower is better)
Translates to: VELTQRMLVVVCFSHFLADGEAL*TAGVEL
Trigger: AAGTTCCACACCAGCCGTCCAGAGAGCTTCGCCATC...TGCAAGAAAATGGCTGAAACAGACCACCACCAGCATTCTTTGGGTCAACTCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CCA 90 bp CTGACCCGTGTGGGAAGGTTCCACAAACAAACGTTCCTAATCCCTTTACCCTGTATTTGTCGGCTGGATTaGGAGCCAGGGGATTTCCGA +
Preference number: 4 (lower is better)
Translates to: LTRVGRFHKQTFLIPLPCICRLD*EPGDFR
Trigger: TCGGAAATCCCCTGGCTCCCAATCCAGCCGACAAAT...ACAGGGTAAAGGGATTAGGAACGTTTGTTTGTGGAACCTTCCCACACGGGTCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CCA 90 bp GAGGAAACCCTAAGCATCTTTGAGCCATGTTCTCCTGGGGACCCACATGTAACTGGTCCAAACCCAAAGTaGTTGGTCTCACAGCGCTCA +
Preference number: 4 (lower is better)
Translates to: EETLSIFEPCSPGDPHVTGPNPK*LVSQRS
Trigger: TGAGCGCTGTGAGACCAACCACTTTGGGTTTGGACC...AGTTACATGTGGGTCCCCAGGAGAACATGGCTCAAAGATGCTTAGGGTTTCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CCA 90 bp GAGGAAACCCTAAGCATCTTTGAGCCATGTTCTCCTGGGGACCCACATGTAACTGAGGGTCATGTTGTTTaGCTCCCCTGTAGACTCTGG +
Preference number: 4 (lower is better)
Translates to: EETLSIFEPCSPGDPHVTEGHVV*LPCRLW
Trigger: CCAGAGTCTACAGGGGAGCCAAACAACATGACCCTC...AGTTACATGTGGGTCCCCAGGAGAACATGGCTCAAAGATGCTTAGGGTTTCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CCA 90 bp CTCAAGTGTTCAGTCATCACATGCTCCCTTAGAAAACTGACCCGTGTGGGAAGGAAGAGGTTGTTCAGCTaGCTGAGGAGGCTGCTGACA +
Preference number: 4 (lower is better)
Translates to: LKCSVITCSLRKLTRVGRKRLFS*LRRLLT
Trigger: TGTCAGCAGCCTCCTCAGCCAGCTGAACAACCTCTT...CCTTCCCACACGGGTCAGTTTTCTAAGGGAGCATGTGATGACTGAACACTTGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR TCA 90 bp CTAGGAGTTGGTCGGCGGTCTGCTGTTCAGCTTTCCCCTTCTCTAGAAGGTTCTTTTGATCTACATCTTTaGCTTCCTGAGCCTCACGGA +
Preference number: 4 (lower is better)
Translates to: LGVGRRSAVQLSPSLEGSFDLHL*LPEPHG
Trigger: TCCGTGAGGCTCAGGAAGTCAAAGATGTAGATCAAA...AGAACCTTCTAGAGAAGGGGAAAGCTGAACAGCAGACCGCCGACCAACTCCTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000163011.2
CDS-3UTR TCA 90 bp GGGATAAAACAATCTGTTCTGTGCGGCACCCCGCATTCTACAGCAGCCATTCTGCTCTCATGTCTTCCCTaGGGTCCTCGTAATCCTTTA +
Preference number: 4 (lower is better)
Translates to: GIKQSVLCGTPHSTAAILLSCLP*GPRNPL
Trigger: TAAAGGATTACGAGGACCTCAGGGAAGACATGAGAG...CAGAATGGCTGCTGTAGAATGCGGGGTGCCGCACAGAACAGATTGTTTTATCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027752.15
ENSMUST00000161744.2
CDS-3UTR GCA 90 bp GAGGAAACCCTAAGCATCTTTGAGCCATGTTCTCCTGGGGACCCACATGTAACTGCTTACAGCTGCATCTaGCGTAACTGTCACACTGTG +
Preference number: 4 (lower is better)
Translates to: EETLSIFEPCSPGDPHVTAYSCI*RNCHTV
Trigger: CACAGTGTGACAGTTACGGCAGATGCAGCTGTAAGC...AGTTACATGTGGGTCCCCAGGAGAACATGGCTCAAAGATGCTTAGGGTTTCCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR GCA 90 bp TTGACCCAAAGAATGCTGGTGGTGGTCTGTTTCAGCCATTTTCTTGCAACTGTGGTGCCAGTCGGACAGTaGGTGCACACCACTTCCTTT +
Preference number: 4 (lower is better)
Translates to: LTQRMLVVVCFSHFLATVVPVGQ*VHTTSF
Trigger: AAAGGAAGTGGTGTGCACGCACTGTCCGACTGGCAC...CACAGTTGCAAGAAAATGGCTGAAACAGACCACCACCAGCATTCTTTGGGTCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR GCA 90 bp GTTGGTCGGCGGTCTGCTGTTCAGCTTTCCCCTTCTCTAGAAGGTTCTTCACTTCTTTCGGGCTTCTTCTaGCAAGAGGGTCATGTTGTT +
Preference number: 4 (lower is better)
Translates to: VGRRSAVQLSPSLEGSSLLSGFF*QEGHVV
Trigger: AACAACATGACCCTCTTGGCAGAAGAAGCCCGAAAG...AAGTGAAGAACCTTCTAGAGAAGGGGAAAGCTGAACAGCAGACCGCCGACCAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163011.2
CDS-3UTR GCA 90 bp GTGGAGTTGACCCAAAGAATGCTGGTGGTGGTCTGTTTCAGCCATTTTCTTGCATACGGCTTTGTCACCTaGACGCTTGGCTTCCTCATG +
Preference number: 4 (lower is better)
Translates to: VELTQRMLVVVCFSHFLAYGFVT*TLGFLM
Trigger: CATGAGGAAGCCAAGCGTGCAGGTGACAAAGCCGTA...TGCAAGAAAATGGCTGAAACAGACCACCACCAGCATTCTTTGGGTCAACTCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CCA 90 bp GGTGCTGATGCCCTCAAGTGTTCAGTCATCACATGCTCCCTTAGAAAACTGACCTTTGCATTTGTCGGCTaGATTGGGAGCCAGGGGATT +
Preference number: 4 (lower is better)
Translates to: GADALKCSVITCSLRKLTFAFVG*IGSQGI
Trigger: AATCCCCTGGCTCCCAATCCAGCCGACAAATGCAAA...GGTCAGTTTTCTAAGGGAGCATGTGATGACTGAACACTTGAGGGCATCAGCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CCA 90 bp GGTGCTGATGCCCTCAAGTGTTCAGTCATCACATGCTCCCTTAGAAAACTGACCTTTCTGCGTCCGCCTTaGTACTGGTGGCATTCTTCT +
Preference number: 4 (lower is better)
Translates to: GADALKCSVITCSLRKLTFLRPP*YWWHSS
Trigger: AGAAGAATGCCACCAGTACCAAGGCGGACGCAGAAA...GGTCAGTTTTCTAAGGGAGCATGTGATGACTGAACACTTGAGGGCATCAGCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CCA 90 bp GAGGAAACCCTAAGCATCTTTGAGCCATGTTCTCCTGGGGACCCACATGTAACTGCCATCATCATGTCCTaGTCGGCATCATCTTGCTTC +
Preference number: 4 (lower is better)
Translates to: EETLSIFEPCSPGDPHVTAIIMS*SASSCF
Trigger: GAAGCAAGATGATGCCGACCAGGACATGATGATGGC...AGTTACATGTGGGTCCCCAGGAGAACATGGCTCAAAGATGCTTAGGGTTTCCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR GCA 90 bp GATGCCCTCAAGTGTTCAGTCATCACATGCTCCCTTAGAAAACTGACCCGTGTGTGTCACCTCCCTTTCTaGTTCCTTAAGTCTGTCCTC +
Preference number: 4 (lower is better)
Translates to: DALKCSVITCSLRKLTRVCHLPF*FLKSVL
Trigger: GAGGACAGACTTAAGGAAGCAGAAAGGGAGGTGACA...CACACGGGTCAGTTTTCTAAGGGAGCATGTGATGACTGAACACTTGAGGGCATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR GCA 90 bp TTGGCAGCCTTGAGAAACACTGAGAGCGGGTGTTTGCCACCAGGACCTGGCAAACTGAGAGATGTTCTTTaGTTGTTCATACTTCCGGTT +
Preference number: 4 (lower is better)
Translates to: LAALRNTESGCLPPGPGKLRDVL*LFILPV
Trigger: AACCGGAAGTATGAACAAGCAAAGAACATCTCTCAG...TTTGCCAGGTCCTGGTGGCAAACACCCGCTCTCAGTGTTTCTCAAGGCTGCCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR GCA 90 bp GGGATAAAACAATCTGTTCTGTGCGGCACCCCGCATTCTACAGCAGCCATTCTGCAGACGGTCCAGGTCTaGAGCTTCTTTCTTGATTTT +
Preference number: 4 (lower is better)
Translates to: GIKQSVLCGTPHSTAAILQTVQV*SFFLDF
Trigger: AAAATCAAGAAAGAAGCTGCAGACCTGGACCGTCTG...CAGAATGGCTGCTGTAGAATGCGGGGTGCCGCACAGAACAGATTGTTTTATCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR GCA 90 bp TTGACCCAAAGAATGCTGGTGGTGGTCTGTTTCAGCCATTTTCTTGCAACTGTGGCTGGCAATCCTCTCTaGCTCATGGGCCTTGTTCTT +
Preference number: 4 (lower is better)
Translates to: LTQRMLVVVCFSHFLATVAGNPL*LMGLVL
Trigger: AAGAACAAGGCCCATGAGGCAGAGAGGATTGCCAGC...CACAGTTGCAAGAAAATGGCTGAAACAGACCACCACCAGCATTCTTTGGGTCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR GCA 90 bp AGAAGTGGAGGAGAGACTTTATTAGGCAAAACCCTTTGTTCCTGGTTAAAGATGATGATGGCTGCCTCCTaGTTCCGAGCCTCGCTCTCC +
Preference number: 4 (lower is better)
Translates to: RSGGETLLGKTLCSWLKMMMAAS*FRASLS
Trigger: GGAGAGCGAGGCTCGGAAGCAGGAGGCAGCCATCAT...CATCTTTAACCAGGAACAAAGGGTTTTGCCTAATAAAGTCTCTCCTCCACTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CCA 90 bp GCTGGTGGTGGTCTGTTTCAGCCATTTTCTTGCAACTGTGACCAAAATGTTAAGGGCACCTCTCGCACTTaGCACCATCTGTGTTATCCC +
Preference number: 4 (lower is better)
Translates to: AGGGLFQPFSCNCDQNVKGTSRT*HHLCYP
Trigger: GGGATAACACAGATGGTGCCAAGTGCGAGAGGTGCC...CTTAACATTTTGGTCACAGTTGCAAGAAAATGGCTGAAACAGACCACCACCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CCA 90 bp AAGAGGAGGCAGAAGATGCAGAGCGGACATACTGGCCATCTCAATGCTACGATGATAAGGTCCAAGGCTTaGAGTTTCTCTTCTGTACCC +
Preference number: 4 (lower is better)
Translates to: KRRQKMQSGHTGHLNATMIRSKA*SFSSVP
Trigger: GGGTACAGAAGAGAAACTCCAAGCCTTGGACCTTAT...CATCGTAGCATTGAGATGGCCAGTATGTCCGCTCTGCATCTTCTGCCTCCTCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR TCA 90 bp AACAATCTGTTCTGTGCGGCACCCCGCATTCTACAGCAGCCATTCTGTCCATTTTTGTTCAGGAGCTTCTaGAATTCAAACGGGGAGAGA +
Preference number: 4 (lower is better)
Translates to: NNLFCAAPRILQQPFCPFLFRSF*NSNGER
Trigger: TCTCTCCCCGTTTGAATTTCAGAAGCTCCTGAACAA...AAATGGACAGAATGGCTGCTGTAGAATGCGGGGTGCCGCACAGAACAGATTGTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR TCA 90 bp TGGCATAGATCTCTACGGCTTTGTCACCTGCACGCTTGGCTTCCTCATGGACTCCGATCCATCAGATTTTaGTCTACATCTTTGACTTCC +
Preference number: 4 (lower is better)
Translates to: WHRSLRLCHLHAWLPHGLRSIRF*STSLTS
Trigger: GGAAGTCAAAGATGTAGATCAAAATCTGATGGATCG...GAGTCCATGAGGAAGCCAAGCGTGCAGGTGACAAAGCCGTAGAGATCTATGCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163011.2
CDS-3UTR TCA 90 bp GTGGAGTTGACCCAAAGAATGCTGGTGGTGGTCTGTTTCAGCCATTTTCTTGCACTCTCATGTCTTCCCTaGGGTCCTCGTAATCCTTTA +
Preference number: 4 (lower is better)
Translates to: VELTQRMLVVVCFSHFLALSCLP*GPRNPL
Trigger: TAAAGGATTACGAGGACCTCAGGGAAGACATGAGAG...TGCAAGAAAATGGCTGAAACAGACCACCACCAGCATTCTTTGGGTCAACTCCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027752.15
ENSMUST00000161744.2
CDS-3UTR GCA 90 bp TACAGGTTATTGGAACTATACAATAAAGCAATGGCTGTGTCGAAGGAGTGTAATGGCTGGCACTCACACTaGCCGGTGCGGATGTCACAC +
Preference number: 4 (lower is better)
Translates to: YRLLELYNKAMAVSKECNGWHSH*PVRMSH
Trigger: GTGTGACATCCGCACCGGGCAGTGTGAGTGCCAGCC...ATTACACTCCTTCGACACAGCCATTGCTTTATTGTATAGTTCCAATAACCTGTA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR GCA 90 bp GGTGCTGATGCCCTCAAGTGTTCAGTCATCACATGCTCCCTTAGAAAACTGACCTGGAGTTTCACTCGATaGTCAGCAACCTTATCCTTC +
Preference number: 4 (lower is better)
Translates to: GADALKCSVITCSLRKLTWSFTR*SATLSF
Trigger: GAAGGATAAGGTTGCTGAGCATCGAGTGAAACTCCA...GGTCAGTTTTCTAAGGGAGCATGTGATGACTGAACACTTGAGGGCATCAGCACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR GCA 90 bp CTGACCCGTGTGGGAAGGTTCCACAAACAAACGTTCCTAATCCCTTTACCCTGTCGGCTAATTTGGCTATaGAGGCTGCTATTTACTCTC +
Preference number: 4 (lower is better)
Translates to: LTRVGRFHKQTFLIPLPCRLIWL*RLLFTL
Trigger: GAGAGTAAATAGCAGCCTGCATAGCCAAATTAGCCG...ACAGGGTAAAGGGATTAGGAACGTTTGTTTGTGGAACCTTCCCACACGGGTCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR GCA 90 bp AACAATCTGTTCTGTGCGGCACCCCGCATTCTACAGCAGCCATTCTGTCCATTTAGTTTGATTTTCTCCTaGCAGGGTCCTCAAAAGCAG +
Preference number: 4 (lower is better)
Translates to: NNLFCAAPRILQQPFCPFSLIFS*QGPQKQ
Trigger: CTGCTTTTGAGGACCCTGGCAGGAGAAAATCAAACT...AAATGGACAGAATGGCTGCTGTAGAATGCGGGGTGCCGCACAGAACAGATTGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR TCA 90 bp CTGACCCGTGTGGGAAGGTTCCACAAACAAACGTTCCTAATCCCTTTACCCTGTTGCATCTCTCACAGTTaGAGCCTTCAACATTGTCTT +
Preference number: 4 (lower is better)
Translates to: LTRVGRFHKQTFLIPLPCCISHS*SLQHCL
Trigger: AAGACAATGTTGAAGGCTTCAACTGTGAGAGATGCA...ACAGGGTAAAGGGATTAGGAACGTTTGTTTGTGGAACCTTCCCACACGGGTCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR TCA 90 bp AATATGGGGAAAAGGAGATTTGCTCTTCTTTCATTGGTCAAGACCTTAGAGGACCTCTGGCTGAGTGATTaGCACATTGGCGGCAGCCAT +
Preference number: 4 (lower is better)
Translates to: NMGKRRFALLSLVKTLEDLWLSD*HIGGSH
Trigger: ATGGCTGCCGCCAATGTGTCAATCACTCAGCCAGAG...GTCCTCTAAGGTCTTGACCAATGAAAGAAGAGCAAATCTCCTTTTCCCCATATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR TCA 90 bp TGCTTGTTCATACTTCCGGTTAAGTTCTTCAATCTCCAGCGCAGTTTGATTTTCCTCTGGCTGAGTGATTaGCACATTGGCGGCAGCCAT +
Preference number: 4 (lower is better)
Translates to: CLFILPVKFFNLQRSLIFLWLSD*HIGGSH
Trigger: ATGGCTGCCGCCAATGTGTCAATCACTCAGCCAGAG...GAAAATCAAACTGCGCTGGAGATTGAAGAACTTAACCGGAAGTATGAACAAGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163011.2
CDS-3UTR TCA 90 bp AGTTCCAAGACTAACACTAACAAAGCTTCAAGAATTAGTACTACTTGGGGAAAACGATGGACGGGGTGTTaGAGCAGCCGGTTGGTAGGG +
Preference number: 4 (lower is better)
Translates to: SSKTNTNKASRISTTWGKRWTGC*SSRLVG
Trigger: CCCTACCAACCGGCTGCTTCAACACCCCGTCCATCG...TTTTCCCCAAGTAGTACTAATTCTTGAAGCTTTGTTAGTGTTAGTCTTGGAACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR GCA 90 bp CTCAAGTGTTCAGTCATCACATGCTCCCTTAGAAAACTGACCCGTGTGGGAAGGGTATTCCGGATATTCTaGAGTCGGCTAATTTGGCTA +
Preference number: 4 (lower is better)
Translates to: LKCSVITCSLRKLTRVGRVFRIF*SRLIWL
Trigger: TAGCCAAATTAGCCGACTGCAGAATATCCGGAATAC...CCTTCCCACACGGGTCAGTTTTCTAAGGGAGCATGTGATGACTGAACACTTGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR TCA 90 bp AGAAGTGGAGGAGAGACTTTATTAGGCAAAACCCTTTGTTCCTGGTTAAAGATGTCCACGGCCGGTCATTaGAGAAAGGCAGGCACTTTT +
Preference number: 4 (lower is better)
Translates to: RSGGETLLGKTLCSWLKMSTAGH*RKAGTF
Trigger: AAAAGTGCCTGCCTTTCTTCAATGACCGGCCGTGGA...CATCTTTAACCAGGAACAAAGGGTTTTGCCTAATAAAGTCTCTCCTCCACTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CCA 90 bp AATATGGGGAAAAGGAGATTTGCTCTTCTTTCATTGGTCAAGACCTTAGAGGACTGTTATCCCGGCAGTTaGTACAGTGGCCACCATGTC +
Preference number: 4 (lower is better)
Translates to: NMGKRRFALLSLVKTLEDCYPGS*YSGHHV
Trigger: GACATGGTGGCCACTGTACCAACTGCCGGGATAACA...GTCCTCTAAGGTCTTGACCAATGAAAGAAGAGCAAATCTCCTTTTCCCCATATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
3UTR CAA 72 bp AGCCTGCTTCTCCAGGTCCTGAGAGATGTTCTTTGCTaGTTCATACTTCCGGTTAAGTTCTTCAATCTCCAG +
Preference number: 4 (lower is better)
Translates to: SLLLQVLRDVLC*FILPVKFFNLQ
Trigger: CTGGAGATTGAAGAACTTAACCGGAAGTATGAACAAGCAAAGAACATCTCTCAGGACCTGGAGAAGCAGGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163011.2
CDS-3UTR GCA 90 bp AGAAGTGGAGGAGAGACTTTATTAGGCAAAACCCTTTGTTCCTGGTTAAAGATGCGAAAAACCCTTCCTTaGACCGGTCGCAGTAGAAAC +
Preference number: 4 (lower is better)
Translates to: RSGGETLLGKTLCSWLKMRKTLP*TGRSRN
Trigger: GTTTCTACTGCGACCGGTGCAAGGAAGGGTTTTTCG...CATCTTTAACCAGGAACAAAGGGTTTTGCCTAATAAAGTCTCTCCTCCACTTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR GCA 90 bp TTAGAGGACAACTGTTTTGACAGATATCTTACCAACAGTTCCAAGACTAACACTCCACAAAGCCTTCCCTaGATTCACAACGGCCGTCCT +
Preference number: 4 (lower is better)
Translates to: LEDNCFDRYLTNSSKTNTPQSLP*IHNGRP
Trigger: AGGACGGCCGTTGTGAATGCAGGGAAGGCTTTGTGG...AGTGTTAGTCTTGGAACTGTTGGTAAGATATCTGTCAAAACAGTTGTCCTCTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CCA 90 bp AATATGGGGAAAAGGAGATTTGCTCTTCTTTCATTGGTCAAGACCTTAGAGGACGTGCACACAGAAGAATaGCCAAAGCAGAAGCAGGGT +
Preference number: 4 (lower is better)
Translates to: NMGKRRFALLSLVKTLEDVHTEE*PKQKQG
Trigger: ACCCTGCTTCTGCTTTGGCCATTCTTCTGTGTGCAC...GTCCTCTAAGGTCTTGACCAATGAAAGAAGAGCAAATCTCCTTTTCCCCATATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR TCA 90 bp AGAAGTGGAGGAGAGACTTTATTAGGCAAAACCCTTTGTTCCTGGTTAAAGATGTTTGATCTACATCTTTaGCTTCCTGAGCCTCACGGA +
Preference number: 4 (lower is better)
Translates to: RSGGETLLGKTLCSWLKMFDLHL*LPEPHG
Trigger: TCCGTGAGGCTCAGGAAGTCAAAGATGTAGATCAAA...CATCTTTAACCAGGAACAAAGGGTTTTGCCTAATAAAGTCTCTCCTCCACTTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR TCA 90 bp AATATGGGGAAAAGGAGATTTGCTCTTCTTTCATTGGTCAAGACCTTAGAGGACGTTTGCAGTTGCACATaGGTTTGTCAAACTCGTTCT +
Preference number: 4 (lower is better)
Translates to: NMGKRRFALLSLVKTLEDVCSCT*VCQTRS
Trigger: AGAACGAGTTTGACAAACTCATGTGCAACTGCAAAC...GTCCTCTAAGGTCTTGACCAATGAAAGAAGAGCAAATCTCCTTTTCCCCATATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR GCA 90 bp TTAGAGGACAACTGTTTTGACAGATATCTTACCAACAGTTCCAAGACTAACACTCTTTCGGGCTTCTTCTaGCAAGAGGGTCATGTTGTT +
Preference number: 4 (lower is better)
Translates to: LEDNCFDRYLTNSSKTNTLSGFF*QEGHVV
Trigger: AACAACATGACCCTCTTGGCAGAAGAAGCCCGAAAG...AGTGTTAGTCTTGGAACTGTTGGTAAGATATCTGTCAAAACAGTTGTCCTCTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR TCA 90 bp TACAGGTTATTGGAACTATACAATAAAGCAATGGCTGTGTCGAAGGAGTGTAATCGATCCATCAGATTTTaGTCTACATCTTTGACTTCC +
Preference number: 4 (lower is better)
Translates to: YRLLELYNKAMAVSKECNRSIRF*STSLTS
Trigger: GGAAGTCAAAGATGTAGATCAAAATCTGATGGATCG...ATTACACTCCTTCGACACAGCCATTGCTTTATTGTATAGTTCCAATAACCTGTA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR GCA 90 bp AGTTCCAAGACTAACACTAACAAAGCTTCAAGAATTAGTACTACTTGGGGAAAACTTCAACATTGTCTTTaGAAACGCATCTTCCTGTTT +
Preference number: 4 (lower is better)
Translates to: SSKTNTNKASRISTTWGKLQHCL*KRIFLF
Trigger: AAACAGGAAGATGCGTTTGCAAAGACAATGTTGAAG...TTTTCCCCAAGTAGTACTAATTCTTGAAGCTTTGTTAGTGTTAGTCTTGGAACT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 90 bp ACGGTCACATTGAAGGCGGCATTAACAAACTCCGGCATGCAGCGCTaGGGCCGCCCGCCCTCATCCGCGCACTCGTCCATGGCCGCCCGG +
Preference number: 5 (lower is better)
Translates to: TVTLKAALTNSGMQR*GRPPSSAHSSMAAR
Trigger: CCGGGCGGCCATGGACGAGTGCGCGGATGAGGGCGGGCGGCCGCAGCGCTGCATGCCGGAGTTTGTTAATGCCGCCTTCAATGTGACCGT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 90 bp GGAGGCACGTCTCACAGAACTGTCCCCCGTATCCCACTGGACAGGTaGAGGACTCCACCCACGTTGCAGGGACTCCGGGCCCAGGGCGAG +
Preference number: 5 (lower is better)
Translates to: GGTSHRTVPRIPLDR*RTPPTLQGLRAQGE
Trigger: CTCGCCCTGGGCCCGGAGTCCCTGCAACGTGGGTGGAGTCCTGCACCTGTCCAGTGGGATACGGGGGACAGTTCTGTGAGACGTGCCTCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 90 bp CCACCAGGTGGTGTCGGCCTGGTTGTTGTAGTCGGTCAGGAAGGCTaGCCCGTGTTGCAGGTGCTGCTGGCCGGCGTCGCACAGGTGACA +
Preference number: 5 (lower is better)
Translates to: PPGGVGLVVVVGQEG*PVLQVLLAGVAQVT
Trigger: TGTCACCTGTGCGACGCCGGCCAGCAGCACCTGCAACACGGGGCAGCCTTCCTGACCGACTACAACAACCAGGCCGACACCACCTGGTGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CCA 90 bp GTACCCTGGGAGGCACGTCTCACAGAACTGTCCCCCGTATCCCACTaGACAGGTGCAGGACTCCACCCACGTTGCAGGGACTCCGGGCCC +
Preference number: 5 (lower is better)
Translates to: VPWEARLTELSPVSH*TGAGLHPRCRDSGP
Trigger: GGGCCCGGAGTCCCTGCAACGTGGGTGGAGTCCTGCACCTGTCCAGTGGGATACGGGGGACAGTTCTGTGAGACGTGCCTCCCAGGGTAC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CCA 90 bp CGCTGGCAATCCTCTCTGCCTCATGGGCCTTGTTCTTGGCCTCCGTaGCGTCAGCGGCAGCATTGCCCAGCGCTAGCTGGGCCTCCCTTG +
Preference number: 5 (lower is better)
Translates to: RWQSSLPHGPCSWPP*RQRQHCPALAGPPL
Trigger: CAAGGGAGGCCCAGCTAGCGCTGGGCAATGCTGCCGCTGACGCCACGGAGGCCAAGAACAAGGCCCATGAGGCAGAGAGGATTGCCAGCG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CCA 90 bp TCTGCACGGCGCTGGCAATCCTCTCTGCCTCATGGGCCTTGTTCTTaGCCTCCGTGGCGTCAGCGGCAGCATTGCCCAGCGCTAGCTGGG +
Preference number: 5 (lower is better)
Translates to: SARRWQSSLPHGPCS*PPWRQRQHCPALAG
Trigger: CCCAGCTAGCGCTGGGCAATGCTGCCGCTGACGCCACGGAGGCCAAGAACAAGGCCCATGAGGCAGAGAGGATTGCCAGCGCCGTGCAGA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CAA 90 bp GGCAGGCATGAGAACCTTGAGGAGCTGCAGCTCAGATGGTCAGAGCCACGGGGAGAAGGCTGCCCCGTGTaGCAGGTGCTGCTGGCCGGC +
Preference number: 5 (lower is better)
Translates to: GRHENLEELQLRWSEPRGEGCPV*QVLLAG
Trigger: GCCGGCCAGCAGCACCTGCAACACGGGGCAGCCTTC...TCCCCGTGGCTCTGACCATCTGAGCTGCAGCTCCTCAAGGTTCTCATGCCTGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS TCA 90 bp AAGGCTGCCCCGTGTTGCAGGTGCTGCTGGCCGGCGTCGCACAGGTaGCAGGACTTAGTGACTCCGGTCACCCCAGTCTGCACGCAGTAC +
Preference number: 5 (lower is better)
Translates to: KAAPCCRCCWPASHR*QDLVTPVTPVCTQY
Trigger: GTACTGCGTGCAGACTGGGGTGACCGGAGTCACTAAGTCCTGTCACCTGTGCGACGCCGGCCAGCAGCACCTGCAACACGGGGCAGCCTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 90 bp CAGCGCTCACAGTGCTGGCCGGTGATGCCAGGCTGGCACTCACACTaGCCGGTGCGGATGTCACACTGCCCATTGGTGGAACCCAAAGCA +
Preference number: 5 (lower is better)
Translates to: QRSQCWPVMPGWHSH*PVRMSHCPLVEPKA
Trigger: TGCTTTGGGTTCCACCAATGGGCAGTGTGACATCCGCACCGGGCAGTGTGAGTGCCAGCCTGGCATCACCGGCCAGCACTGTGAGCGCTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CCA 90 bp GCTGGCACTCACACTGCCCGGTGCGGATGTCACACTGCCCATTGGTaGAACCCAAAGCATGGCAGTCACACCTCTCGCAGCCTTGCCCGC +
Preference number: 5 (lower is better)
Translates to: AGTHTARCGCHTAHW*NPKHGSHTSRSLAR
Trigger: GCGGGCAAGGCTGCGAGAGGTGTGACTGCCATGCTTTGGGTTCCACCAATGGGCAGTGTGACATCCGCACCGGGCAGTGTGAGTGCCAGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 90 bp CCTCATGGGCCTTGTTCTTGGCCTCCGTGGCGTCAGCGGCAGCATTaGCCAGCGCTAGCTGGGCCTCCCTTGTCTTCTCATTGGCTTCAG +
Preference number: 5 (lower is better)
Translates to: PHGPCSWPPWRQRQH*PALAGPPLSSHWLQ
Trigger: CTGAAGCCAATGAGAAGACAAGGGAGGCCCAGCTAGCGCTGGGCAATGCTGCCGCTGACGCCACGGAGGCCAAGAACAAGGCCCATGAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 90 bp CTTGGTACTGGTGGCATTCTTCTGCACGGCGCTGGCAATCCTCTCTaGCTCATGGGCCTTGTTCTTGGCCTCCGTGGCGTCAGCGGCAGC +
Preference number: 5 (lower is better)
Translates to: LGTGGILLHGAGNPL*LMGLVLGLRGVSGS
Trigger: GCTGCCGCTGACGCCACGGAGGCCAAGAACAAGGCCCATGAGGCAGAGAGGATTGCCAGCGCCGTGCAGAAGAATGCCACCAGTACCAAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CCA 90 bp CGGTTGCAGTTGCCAACCGCGTTGGGGTCTATGTTGTCGTTACACTaGCACGGGCGGCACAGTCTCACAGGCCCATTGCTGCCCAGAGGG +
Preference number: 5 (lower is better)
Translates to: RLQLPTALGSMLSLH*HGRHSLTGPLLPRG
Trigger: CCCTCTGGGCAGCAATGGGCCTGTGAGACTGTGCCGCCCGTGCCAGTGTAACGACAACATAGACCCCAACGCGGTTGGCAACTGCAACCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS TCA 90 bp CCCACGTTGCAGGGACTCCGGGCCCAGGGCGAGCACTTTGCAAGGTaGCATCATCCAAGTACCCAGCGCTCCTCTCGCTGTATGTACCAC +
Preference number: 5 (lower is better)
Translates to: PTLQGLRAQGEHFAR*HHPSTQRSSRCMYH
Trigger: GTGGTACATACAGCGAGAGGAGCGCTGGGTACTTGGATGATGTCACCTTGCAAAGTGCTCGCCCTGGGCCCGGAGTCCCTGCAACGTGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 90 bp GACTCCACCCACGTTGCAGGGACTCCGGGCCCAGGGCGAGCACTTTaGAAGGTGACATCATCCAAGTACCCAGCGCTCCTCTCGCTGTAT +
Preference number: 5 (lower is better)
Translates to: DSTHVAGTPGPGRAL*KVTSSKYPALLSLY
Trigger: ATACAGCGAGAGGAGCGCTGGGTACTTGGATGATGTCACCTTGCAAAGTGCTCGCCCTGGGCCCGGAGTCCCTGCAACGTGGGTGGAGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 90 bp GTGATGCCAGGCTGGCACTCACACTGCCCGGTGCGGATGTCACACTaGCCATTGGTGGAACCCAAAGCATGGCAGTCACACCTCTCGCAG +
Preference number: 5 (lower is better)
Translates to: VMPGWHSHCPVRMSH*PLVEPKAWQSHLSQ
Trigger: CTGCGAGAGGTGTGACTGCCATGCTTTGGGTTCCACCAATGGGCAGTGTGACATCCGCACCGGGCAGTGTGAGTGCCAGCCTGGCATCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CCA 90 bp ACTTCAGGCACTCGCCCGTCAGGCGGTTGCAGTTGCCAACCGCGTTaGGGTCTATGTTGTCGTTACACTGGCACGGGCGGCACAGTCTCA +
Preference number: 5 (lower is better)
Translates to: TSGTRPSGGCSCQPR*GLCCRYTGTGGTVS
Trigger: TGAGACTGTGCCGCCCGTGCCAGTGTAACGACAACATAGACCCCAACGCGGTTGGCAACTGCAACCGCCTGACGGGCGAGTGCCTGAAGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CCA 90 bp TTCTTGGCCTCCGTGGCGTCAGCGGCAGCATTGCCCAGCGCTAGCTaGGCCTCCCTTGTCTTCTCATTGGCTTCAGCTATGGTCCGGTTG +
Preference number: 5 (lower is better)
Translates to: FLASVASAAALPSAS*ASLVFSLASAMVRL
Trigger: CAACCGGACCATAGCTGAAGCCAATGAGAAGACAAGGGAGGCCCAGCTAGCGCTGGGCAATGCTGCCGCTGACGCCACGGAGGCCAAGAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CAA 90 bp GGCAGGCATGAGAACCTTGAGGAGCTGCAGCTCAGATGGTCAGAGCCACGGGGAACACCTCTCGCAGCCTaGCCCGCTCTGCAGGTTGTA +
Preference number: 5 (lower is better)
Translates to: GRHENLEELQLRWSEPRGTPLAA*PALQVV
Trigger: TACAACCTGCAGAGCGGGCAAGGCTGCGAGAGGTGT...TCCCCGTGGCTCTGACCATCTGAGCTGCAGCTCCTCAAGGTTCTCATGCCTGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CAA 90 bp AGCTCAGATGGTCAGAGCCACGGGGAAGAGGGCCCTCTTCGGTCAGGTTGTGGATCGATGGACGGGGTGTaGAAGCAGCCGGTTGGTAGG +
Preference number: 5 (lower is better)
Translates to: SSDGQSHGEEGPLRSGCGSMDGV*KQPVGR
Trigger: CCTACCAACCGGCTGCTTCAACACCCCGTCCATCGA...TCCACAACCTGACCGAAGAGGGCCCTCTTCCCCGTGGCTCTGACCATCTGAGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS TCA 90 bp GTGCGTGCACACCACTTCCTTTGTCTTTGGGACAATGGCACAACTTaGGCCACCGGGGCAGGGACAAGGCTGGCAGTCAGAGGAGGTGCC +
Preference number: 5 (lower is better)
Translates to: VRAHHFLCLWDNGTT*ATGAGTRLAVRGGA
Trigger: GGCACCTCCTCTGACTGCCAGCCTTGTCCCTGCCCCGGTGGCTCAAGTTGTGCCATTGTCCCAAAGACAAAGGAAGTGGTGTGCACGCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 90 bp ACACATGAGGCAGACACTGGCACTGTCCGGTCACCGGGTTACAGCTaGTCTGTTGCTGCACTGTCCCGTAGGGATTGCAGGCGCAGGCTT +
Preference number: 5 (lower is better)
Translates to: THEADTGTVRSPGYS*SVAALSRRDCRRRL
Trigger: AAGCCTGCGCCTGCAATCCCTACGGGACAGTGCAGCAACAGAGCAGCTGTAACCCGGTGACCGGACAGTGCCAGTGTCTGCCTCATGTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CAA 90 bp AGCTCAGATGGTCAGAGCCACGGGGAAGAGGGCCCTCTTCGGTCAGGTTGTGGATCCCCAGTGCCAAGGTaGGCGATGAGGCTCTCTAAC +
Preference number: 5 (lower is better)
Translates to: SSDGQSHGEEGPLRSGCGSPVPR*AMRLSN
Trigger: GTTAGAGAGCCTCATCGCCAACCTTGGCACTGGGGA...TCCACAACCTGACCGAAGAGGGCCCTCTTCCCCGTGGCTCTGACCATCTGAGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CAA 90 bp GCATCGGCTCGAGCTAGGAGTTGGTCGGCGGTCTGCTGTTCAGCTTTCCCCTTCTGGCGGCAGCCATTTTaGCTTTCTCGAGCTCCCTGG +
Preference number: 5 (lower is better)
Translates to: ASARARSWSAVCCSAFPFWRQPF*LSRAPW
Trigger: CCAGGGAGCTCGAGAAAGCAAAAATGGCTGCCGCCA...GAAGGGGAAAGCTGAACAGCAGACCGCCGACCAACTCCTAGCTCGAGCCGATGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000163011.2
CDS GCA 90 bp AACTTGAGCCACCGGGGCAGGGACAAGGCTGGCAGTCAGAGGAGGTaGCCAGGGTTGAGTCCCCATAGTACCCATCGCTACATTTCTCAC +
Preference number: 5 (lower is better)
Translates to: NLSHRGRDKAGSQRR*PGLSPHSTHRYISH
Trigger: GTGAGAAATGTAGCGATGGGTACTATGGGGACTCAACCCTGGGCACCTCCTCTGACTGCCAGCCTTGTCCCTGCCCCGGTGGCTCAAGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CCA 90 bp TCCCGTAGGGATTGCAGGCGCAGGCTTTGCATTTGTCGGCTGGATTaGGAGCCAGGGGATTTCCGAAAAACCCTTCCTTGCACCGGTCGC +
Preference number: 5 (lower is better)
Translates to: SRRDCRRRLCICRLD*EPGDFRKTLPCTGR
Trigger: GCGACCGGTGCAAGGAAGGGTTTTTCGGAAATCCCCTGGCTCCCAATCCAGCCGACAAATGCAAAGCCTGCGCCTGCAATCCCTACGGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CAA 90 bp TTGGCAGCCTTGAGAAACACTGAGAGCGGGTGTTTGCCACCAGGACCTGGCAAATCTGCCTCATGGGCCTaGTTCTTGGCCTCCGTGGCG +
Preference number: 5 (lower is better)
Translates to: LAALRNTESGCLPPGPGKSASWA*FLASVA
Trigger: CGCCACGGAGGCCAAGAACAAGGCCCATGAGGCAGA...TTTGCCAGGTCCTGGTGGCAAACACCCGCTCTCAGTGTTTCTCAAGGCTGCCAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 90 bp CAGCCGTGTTATAGATGCACTTCAGGCACTCGCCCGTCAGGCGGTTaGAGTTGCCAACCGCGTTGGGGTCTATGTTGTCGTTACACTGGC +
Preference number: 5 (lower is better)
Translates to: QPCYRCTSGTRPSGG*SCQPRWGLCCRYTG
Trigger: GCCAGTGTAACGACAACATAGACCCCAACGCGGTTGGCAACTGCAACCGCCTGACGGGCGAGTGCCTGAAGTGCATCTATAACACGGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CCA 90 bp CCAGGGCCCGTCTTCCCGAGTGCGCTTATAGATGGCGAAGCTCTCTaGACGGCTGGTGTGGAACTTGAGGCGCACGTAAGTGATGTCAAA +
Preference number: 5 (lower is better)
Translates to: PGPVFPSALIDGEAL*TAGVELEAHVSDVK
Trigger: TTTGACATCACTTACGTGCGCCTCAAGTTCCACACCAGCCGTCCAGAGAGCTTCGCCATCTATAAGCGCACTCGGGAAGACGGGCCCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CCA 90 bp CAGTGTTCCCCAGGCGGAAGAAATTCTCCCGGCACCTCTCGCACTTaGCACCATCTGTGTTATCCCGGCAGTTGGTACAGTGGCCACCAT +
Preference number: 5 (lower is better)
Translates to: QCSPGGRNSPGTSRT*HHLCYPGSWYSGHH
Trigger: ATGGTGGCCACTGTACCAACTGCCGGGATAACACAGATGGTGCCAAGTGCGAGAGGTGCCGGGAGAATTTCTTCCGCCTGGGGAACACTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CCA 90 bp CACTGTCCCGTAGGGATTGCAGGCGCAGGCTTTGCATTTGTCGGCTaGATTGGGAGCCAGGGGATTTCCGAAAAACCCTTCCTTGCACCG +
Preference number: 5 (lower is better)
Translates to: HCPVGIAGAGFAFVG*IGSQGISEKPFLAP
Trigger: CGGTGCAAGGAAGGGTTTTTCGGAAATCCCCTGGCTCCCAATCCAGCCGACAAATGCAAAGCCTGCGCCTGCAATCCCTACGGGACAGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CAA 90 bp CTGACCCGTGTGGGAAGGTTCCACAAACAAACGTTCCTAATCCCTTTACCCTGTAGGACTCCACCCACGTaGCAGGGACTCCGGGCCCAG +
Preference number: 5 (lower is better)
Translates to: LTRVGRFHKQTFLIPLPCRTPPT*QGLRAQ
Trigger: CTGGGCCCGGAGTCCCTGCAACGTGGGTGGAGTCCT...ACAGGGTAAAGGGATTAGGAACGTTTGTTTGTGGAACCTTCCCACACGGGTCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 90 bp GCCATTTTTGCTTTCTCGAGCTCCCTGGAGGCGATCTCAATCAGCTaGTCTGTACTCTCCACTCGGGACCGTGCTCGCTCAGCCAAGATC +
Preference number: 5 (lower is better)
Translates to: AIFAFSSSLEAISIS*SVLSTRDRARSAKI
Trigger: GATCTTGGCTGAGCGAGCACGGTCCCGAGTGGAGAGTACAGAGCAGCTGATTGAGATCGCCTCCAGGGAGCTCGAGAAAGCAAAAATGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027752.15
ENSMUST00000163011.2
CDS CCA 90 bp CCCGGCACCTCTCGCACTTGGCACCATCTGTGTTATCCCGGCAGTTaGTACAGTGGCCACCATGTCCAGTGGAACGGTATAGTTCAGGAT +
Preference number: 5 (lower is better)
Translates to: PGTSRTWHHLCYPGS*YSGHHVQWNGIVQD
Trigger: ATCCTGAACTATACCGTTCCACTGGACATGGTGGCCACTGTACCAACTGCCGGGATAACACAGATGGTGCCAAGTGCGAGAGGTGCCGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CCA 90 bp TTCAACATTACACTCGTCTGTGCTGCCCGAAGGATCGCAGGAGCATaGCCTGCATCCTGCCTCAGTGAGGGAATGGAACCCAGGCTGACA +
Preference number: 5 (lower is better)
Translates to: FNITLVCAARRIAGA*PASCLSEGMEPRLT
Trigger: TGTCAGCCTGGGTTCCATTCCCTCACTGAGGCAGGATGCAGGCCATGCTCCTGCGATCCTTCGGGCAGCACAGACGAGTGTAATGTTGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CCA 90 bp TCCGAGCCTCGCTCTCCAGGTCAGACACCTTCCTGTCCAGGTCGCTaGCCTTCATTTCGTCTTTGGCTTTGTTCAGGGAGCCTTCGATCT +
Preference number: 5 (lower is better)
Translates to: SEPRSPGQTPSCPGR*PSFRLWLCSGSLRS
Trigger: AGATCGAAGGCTCCCTGAACAAAGCCAAAGACGAAATGAAGGCCAGCGACCTGGACAGGAAGGTGTCTGACCTGGAGAGCGAGGCTCGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CAA 90 bp AGGTTGAGAAGCCCACTAGGAAATGCCACGCATGGATCTTCCCTCTCCACACAGGGAGTCCCACACGTGTaGGTAGCCACCACGGTCACA +
Preference number: 5 (lower is better)
Translates to: RLRSPLGNATHGSSLSTQGVPHV*VATTVT
Trigger: TGTGACCGTGGTGGCTACCAACACGTGTGGGACTCC...CTGTGTGGAGAGGGAAGATCCATGCGTGGCATTTCCTAGTGGGCTTCTCAACCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CAA 90 bp GGAAATGCCACGCATGGATCTTCCCTCTCCACACAGAGGAAAGGCTTGGAGTGGAGGTGCAGCGTGAGGTaGATGGAGTTGGGGTACTGC +
Preference number: 5 (lower is better)
Translates to: GNATHGSSLSTQRKGLEWRCSVR*MELGYC
Trigger: GCAGTACCCCAACTCCATCAACCTCACGCTGCACCT...CCACTCCAAGCCTTTCCTCTGTGTGGAGAGGGAAGATCCATGCGTGGCATTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CAA 90 bp CAGAGGAAAGGCTTGGAGTGGGCAGAGCCACAAAGTGCAGGAACTAGATGGGGTTGGGGGCCGGCTGTATaGTCTCTGCAGTCACAGACA +
Preference number: 5 (lower is better)
Translates to: QRKGLEWAEPQSAGTRWGWGPAV*SLQSQT
Trigger: TGTCTGTGACTGCAGAGACAATACAGCCGGCCCCCA...ACCCCATCTAGTTCCTGCACTTTGTGGCTCTGCCCACTCCAAGCCTTTCCTCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CAA 90 bp GGTGCGTGCGAGCTGCCCATCCAGACTTTTTATCAGCTGCCTGAGGATTTGGGAAGGAGGTGCCCAGGGTaGAGTCCCCATAGTACCCAT +
Preference number: 5 (lower is better)
Translates to: GACELPIQTFYQLPEDLGRRCPG*SPHSTH
Trigger: ATGGGTACTATGGGGACTCAACCCTGGGCACCTCCT...TCCCAAATCCTCAGGCAGCTGATAAAAAGTCTGGATGGGCAGCTCGCACGCACC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CAA 90 bp GGCAGGCATGAGAACCTTGAGGAGCTGCAGCTCAGATGGTCAGAGCCACGGGGAGAGCCTTCGATCTCATaGAGCTTGTTCAGGTCCACT +
Preference number: 5 (lower is better)
Translates to: GRHENLEELQLRWSEPRGEPSIS*SLFRST
Trigger: AGTGGACCTGAACAAGCTCAATGAGATCGAAGGCTC...TCCCCGTGGCTCTGACCATCTGAGCTGCAGCTCCTCAAGGTTCTCATGCCTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS TCA 90 bp GCTGGGCCTCCCTTGTCTTCTCATTGGCTTCAGCTATGGTCCGGTTaGTGGCGGGAATTCTCCTTAGAGCTTCTTCCGCGGCTGTCTTGT +
Preference number: 5 (lower is better)
Translates to: AGPPLSSHWLQLWSG*WREFSLELLPRLSC
Trigger: ACAAGACAGCCGCGGAAGAAGCTCTAAGGAGAATTCCCGCCATCAACCGGACCATAGCTGAAGCCAATGAGAAGACAAGGGAGGCCCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 90 bp ACCCACTGTAGTACTGATAAGGAATCCAGGGCCCGTCTTCCCGAGTaGGCTTATAGATGGCGAAGCTCTCTGGACGGCTGGTGTGGAACT +
Preference number: 5 (lower is better)
Translates to: THCSTDKESRARLPE*AYRWRSSLDGWCGT
Trigger: AGTTCCACACCAGCCGTCCAGAGAGCTTCGCCATCTATAAGCGCACTCGGGAAGACGGGCCCTGGATTCCTTATCAGTACTACAGTGGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CCA 90 bp ACACGGGCTATAAGGTCCAAGGCTTGGAGTTTCTCTTCTGTACCCTaGGAGGCACGTCTCACAGAACTGTCCCCCGTATCCCACTGGACA +
Preference number: 5 (lower is better)
Translates to: TRAIRSKAWSFSSVP*EARLTELSPVSHWT
Trigger: TGTCCAGTGGGATACGGGGGACAGTTCTGTGAGACGTGCCTCCCAGGGTACAGAAGAGAAACTCCAAGCCTTGGACCTTATAGCCCGTGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CAA 90 bp CTGACCCGTGTGGGAAGGTTCCACAAACAAACGTTCCTAATCCCTTTACCCTGTGTGAGGTTGATGGAGTaGGGGTACTGCACCCCGGCC +
Preference number: 5 (lower is better)
Translates to: LTRVGRFHKQTFLIPLPCVRLME*GYCTPA
Trigger: GGCCGGGGTGCAGTACCCCAACTCCATCAACCTCAC...ACAGGGTAAAGGGATTAGGAACGTTTGTTTGTGGAACCTTCCCACACGGGTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CAA 90 bp TCAGAGGTTGAGAAGCCCACTAGGAAATGCCACGCATGGATCTTCCCTCTCCACGTTACAGCTGCTCTGTaGCTGCACTGTCCCGTAGGG +
Preference number: 5 (lower is better)
Translates to: SEVEKPTRKCHAWIFPLHVTAAL*LHCPVG
Trigger: CCCTACGGGACAGTGCAGCAACAGAGCAGCTGTAAC...GTGGAGAGGGAAGATCCATGCGTGGCATTTCCTAGTGGGCTTCTCAACCTCTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 90 bp CACAGAGTTCACATCTCTTGCCGGCAGTGCCAGTCGGACAGTGCGTaGACACCACTTCCTTTGTCTTTGGGACAATGGCACAACTTGAGC +
Preference number: 5 (lower is better)
Translates to: HRVHISCRQCQSDSA*TPLPLSLGQWHNLS
Trigger: GCTCAAGTTGTGCCATTGTCCCAAAGACAAAGGAAGTGGTGTGCACGCACTGTCCGACTGGCACTGCCGGCAAGAGATGTGAACTCTGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CAA 90 bp AAGAGGAGGCAGAAGATGCAGAGCGGACATACTGGCCATCTCAATGCTACGATGTGGCGGCAGCCATTTTaGCTTTCTCGAGCTCCCTGG +
Preference number: 5 (lower is better)
Translates to: KRRQKMQSGHTGHLNATMWRQPF*LSRAPW
Trigger: CCAGGGAGCTCGAGAAAGCAAAAATGGCTGCCGCCA...CATCGTAGCATTGAGATGGCCAGTATGTCCGCTCTGCATCTTCTGCCTCCTCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CAA 90 bp GGAAATGCCACGCATGGATCTTCCCTCTCCACACAGAGGAAAGGCTTGGAGTGGTCAGCTGAAGTCTCGTaGGCTGTCTTTGCCACTCGT +
Preference number: 5 (lower is better)
Translates to: GNATHGSSLSTQRKGLEWSAEVS*AVFATR
Trigger: ACGAGTGGCAAAGACAGCCAACGAGACTTCAGCTGA...CCACTCCAAGCCTTTCCTCTGTGTGGAGAGGGAAGATCCATGCGTGGCATTTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS TCA 90 bp CTGCTGCTCGTCCCCTCCGGTCCTGATGAAGCCACGGTTAGCCTTTaGGTACGTGTTCTCACAGGACCCACTGTAGTACTGATAAGGAAT +
Preference number: 5 (lower is better)
Translates to: LLLVPSGPDEATVSL*VRVLTGPTVVLIRN
Trigger: ATTCCTTATCAGTACTACAGTGGGTCCTGTGAGAACACGTACTCAAAGGCTAACCGTGGCTTCATCAGGACCGGAGGGGACGAGCAGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS TCA 90 bp AGGCTTGATCTGTCACCATGTCATCCCCAGTGCCAAGGTTGGCGATaGGGCTCTCTAACTCCTGGAGTTTCACTCGATGCTCAGCAACCT +
Preference number: 5 (lower is better)
Translates to: RLDLSPCHPQCQGWR*GSLTPGVSLDAQQP
Trigger: AGGTTGCTGAGCATCGAGTGAAACTCCAGGAGTTAGAGAGCCTCATCGCCAACCTTGGCACTGGGGATGACATGGTGACAGATCAAGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 90 bp TGTCTTTGCAAACGCATCTTCCTGTTTCAACATTACACTCGTCTGTaGTGCCCGAAGGATCGCAGGAGCATGGCCTGCATCCTGCCTCAG +
Preference number: 5 (lower is better)
Translates to: CLCKRIFLFQHYTRL*CPKDRRSMACILPQ
Trigger: CTGAGGCAGGATGCAGGCCATGCTCCTGCGATCCTTCGGGCAGCACAGACGAGTGTAATGTTGAAACAGGAAGATGCGTTTGCAAAGACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 90 bp ATCGGCTTCCTGTTTATGACGCTCTGCAAGCTTTCGGGCTTCTTCTaGCAAGAGGGTCATGTTGTTTGGCTCCCCTGTAGACTCTGGCTG +
Preference number: 5 (lower is better)
Translates to: IGFLFMTLCKLSGFF*QEGHVVWLPCRLWL
Trigger: CAGCCAGAGTCTACAGGGGAGCCAAACAACATGACCCTCTTGGCAGAAGAAGCCCGAAAGCTTGCAGAGCGTCATAAACAGGAAGCCGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 90 bp ATTCACCTCATTATCCAGATCTGTAACTTCCCCGAAGGTTCTTTCTaGGTCCGCCTTGGTACTGGTGGCATTCTTCTGCACGGCGCTGGC +
Preference number: 5 (lower is better)
Translates to: IHLIIQICNFPEGSF*VRLGTGGILLHGAG
Trigger: GCCAGCGCCGTGCAGAAGAATGCCACCAGTACCAAGGCGGACGCAGAAAGAACCTTCGGGGAAGTTACAGATCTGGATAATGAGGTGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 90 bp ATCCTTAATGATCTCTGCTATGTCCCGGTTATAGTCCATGATGGCTaGCTCCTGCTTCCGAGCCTCGCTCTCCAGGTCAGACACCTTCCT +
Preference number: 5 (lower is better)
Translates to: ILNDLCYVPVIVHDG*LLLPSLALQVRHLP
Trigger: AGGAAGGTGTCTGACCTGGAGAGCGAGGCTCGGAAGCAGGAGGCAGCCATCATGGACTATAACCGGGACATAGCAGAGATCATTAAGGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CCA 90 bp CCCATTACAGGTACAGAGCACACACGGGCTATAAGGTCCAAGGCTTaGAGTTTCTCTTCTGTACCCTGGGAGGCACGTCTCACAGAACTG +
Preference number: 5 (lower is better)
Translates to: PITGTEHTRAIRSKA*SFSSVPWEARLTEL
Trigger: CAGTTCTGTGAGACGTGCCTCCCAGGGTACAGAAGAGAAACTCCAAGCCTTGGACCTTATAGCCCGTGTGTGCTCTGTACCTGTAATGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CCA 90 bp ATGTCATCCCCAGTGCCAAGGTTGGCGATGAGGCTCTCTAACTCCTaGAGTTTCACTCGATGCTCAGCAACCTTATCCTTCACCAGTCGG +
Preference number: 5 (lower is better)
Translates to: MSSPVPRLAMRLSNS*SFTRCSATLSFTSR
Trigger: CCGACTGGTGAAGGATAAGGTTGCTGAGCATCGAGTGAAACTCCAGGAGTTAGAGAGCCTCATCGCCAACCTTGGCACTGGGGATGACAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CAA 90 bp GGTGCTGATGCCCTCAAGTGTTCAGTCATCACATGCTCCCTTAGAAAACTGACCCGGCACCTCTCGCACTaGGCACCATCTGTGTTATCC +
Preference number: 5 (lower is better)
Translates to: GADALKCSVITCSLRKLTRHLSH*APSVLS
Trigger: GGATAACACAGATGGTGCCAAGTGCGAGAGGTGCCG...GGTCAGTTTTCTAAGGGAGCATGTGATGACTGAACACTTGAGGGCATCAGCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CAA 90 bp GGGATAAAACAATCTGTTCTGTGCGGCACCCCGCATTCTACAGCAGCCATTCTGGCCAAGAGGGTCATGTaGTTTGGCTCCCCTGTAGAC +
Preference number: 5 (lower is better)
Translates to: GIKQSVLCGTPHSTAAILAKRVM*FGSPVD
Trigger: GTCTACAGGGGAGCCAAACAACATGACCCTCTTGGC...CAGAATGGCTGCTGTAGAATGCGGGGTGCCGCACAGAACAGATTGTTTTATCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CAA 90 bp GGGATAAAACAATCTGTTCTGTGCGGCACCCCGCATTCTACAGCAGCCATTCTGCTAGCTGGGCCTCCCTaGTCTTCTCATTGGCTTCAG +
Preference number: 5 (lower is better)
Translates to: GIKQSVLCGTPHSTAAILLAGPP*SSHWLQ
Trigger: CTGAAGCCAATGAGAAGACAAGGGAGGCCCAGCTAG...CAGAATGGCTGCTGTAGAATGCGGGGTGCCGCACAGAACAGATTGTTTTATCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS TCA 90 bp CAACGGCCGTCCTCTTTACACTGGAGTGAAAGGGATCCTTCATGGTaGCAGTCACAAGGTTTGCAGCCTTCAGGTCCAAACCCAAAGTGG +
Preference number: 5 (lower is better)
Translates to: QRPSSLHWSERDPSW*QSQGLQPSGPNPKW
Trigger: CCACTTTGGGTTTGGACCTGAAGGCTGCAAACCTTGTGACTGTCACCATGAAGGATCCCTTTCACTCCAGTGTAAAGAGGACGGCCGTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS TCA 90 bp TCTGTCACCTCCCTTTCTGCTTCCTTAAGTCTGTCCTCAAAGGCTTaGTCTGTCACCATGTCATCCCCAGTGCCAAGGTTGGCGATGAGG +
Preference number: 5 (lower is better)
Translates to: SVTSLSASLSLSSKA*SVTMSSPVPRLAMR
Trigger: CCTCATCGCCAACCTTGGCACTGGGGATGACATGGTGACAGATCAAGCCTTTGAGGACAGACTTAAGGAAGCAGAAAGGGAGGTGACAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 90 bp TCATCACAGAGTTCACATCTCTTGCCGGCAGTGCCAGTCGGACAGTaGGTGCACACCACTTCCTTTGTCTTTGGGACAATGGCACAACTT +
Preference number: 5 (lower is better)
Translates to: SSQSSHLLPAVPVGQ*VHTTSFVFGTMAQL
Trigger: AAGTTGTGCCATTGTCCCAAAGACAAAGGAAGTGGTGTGCACGCACTGTCCGACTGGCACTGCCGGCAAGAGATGTGAACTCTGTGATGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 90 bp AGTTCTCTTCACACTGGTCACAGCGATTGCCCACAAAGCCTTCCCTaGATTCACAACGGCCGTCCTCTTTACACTGGAGTGAAAGGGATC +
Preference number: 5 (lower is better)
Translates to: SSLHTGHSDCPQSLP*IHNGRPLYTGVKGI
Trigger: GATCCCTTTCACTCCAGTGTAAAGAGGACGGCCGTTGTGAATGCAGGGAAGGCTTTGTGGGCAATCGCTGTGACCAGTGTGAAGAGAACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CCA 90 bp CATCTGTGTTATCCCGGCAGTTGGTACAGTGGCCACCATGTCCAGTaGAACGGTATAGTTCAGGATCAAAGTAGCACTCTTGGGATCGGC +
Preference number: 5 (lower is better)
Translates to: HLCYPGSWYSGHHVQ*NGIVQDQSSTLGIG
Trigger: GCCGATCCCAAGAGTGCTACTTTGATCCTGAACTATACCGTTCCACTGGACATGGTGGCCACTGTACCAACTGCCGGGATAACACAGATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CAA 90 bp CTCAAGTGTTCAGTCATCACATGCTCCCTTAGAAAACTGACCCGTGTGGGAAGGGTGTTATCCCGGCAGTaGGTACAGTGGCCACCATGT +
Preference number: 5 (lower is better)
Translates to: LKCSVITCSLRKLTRVGRVLSRQ*VQWPPC
Trigger: ACATGGTGGCCACTGTACCAACTGCCGGGATAACAC...CCTTCCCACACGGGTCAGTTTTCTAAGGGAGCATGTGATGACTGAACACTTGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CAA 90 bp GGTGCGTGCGAGCTGCCCATCCAGACTTTTTATCAGCTGCCTGAGGATTTGGGATGTAGCCAACAGCATTaGTGCACACAGAAGAATGGC +
Preference number: 5 (lower is better)
Translates to: GACELPIQTFYQLPEDLGCSQQH*CTQKNG
Trigger: GCCATTCTTCTGTGTGCACAAATGCTGTTGGCTACA...TCCCAAATCCTCAGGCAGCTGATAAAAAGTCTGGATGGGCAGCTCGCACGCACC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CAA 90 bp GTGGAGTTGACCCAAAGAATGCTGGTGGTGGTCTGTTTCAGCCATTTTCTTGCACATTTGTCGGCTGGATaGGGAGCCAGGGGATTTCCG +
Preference number: 5 (lower is better)
Translates to: VELTQRMLVVVCFSHFLAHLSAG*GARGFP
Trigger: CGGAAATCCCCTGGCTCCCAATCCAGCCGACAAATG...TGCAAGAAAATGGCTGAAACAGACCACCACCAGCATTCTTTGGGTCAACTCCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CAA 90 bp AAGATGCAGAGCGGACATACTGGCCATCTCAATGCTACGATGAGGAGCCAAAGACCAAACCCAAAGTGGTaGGTCTCACAGCGCTCACAG +
Preference number: 5 (lower is better)
Translates to: KMQSGHTGHLNATMRSQRPNPKW*VSQRSQ
Trigger: CTGTGAGCGCTGTGAGACCAACCACTTTGGGTTTGG...TCTTTGGCTCCTCATCGTAGCATTGAGATGGCCAGTATGTCCGCTCTGCATCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CAA 90 bp GCTGGTGGTGGTCTGTTTCAGCCATTTTCTTGCAACTGTGACCAAAATGTTAAGTCATGGGCCTTGTTCTaGGCCTCCGTGGCGTCAGCG +
Preference number: 5 (lower is better)
Translates to: AGGGLFQPFSCNCDQNVKSWALF*ASVASA
Trigger: CGCTGACGCCACGGAGGCCAAGAACAAGGCCCATGA...CTTAACATTTTGGTCACAGTTGCAAGAAAATGGCTGAAACAGACCACCACCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS TCA 90 bp AAAGCCTTCCCTGCATTCACAACGGCCGTCCTCTTTACACTGGAGTaGAAGGGATCCTTCATGGTGACAGTCACAAGGTTTGCAGCCTTC +
Preference number: 5 (lower is better)
Translates to: KAFPAFTTAVLFTLE*KGSFMVTVTRFAAF
Trigger: GAAGGCTGCAAACCTTGTGACTGTCACCATGAAGGATCCCTTTCACTCCAGTGTAAAGAGGACGGCCGTTGTGAATGCAGGGAAGGCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 90 bp TCAAAAGCAGATTATATGCCGCTCTGCAAGCTTTCGGGCTTCTTCTaGCAAGAGGGTCATGTTGTTTGGCTCCCCTGTAGACTCTGGCTG +
Preference number: 5 (lower is better)
Translates to: SKADYMPLCKLSGFF*QEGHVVWLPCRLWL
Trigger: CAGCCAGAGTCTACAGGGGAGCCAAACAACATGACCCTCTTGGCAGAAGAAGCCCGAAAGCTTGCAGAGCGGCATATAATCTGCTTTTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000163011.2
CDS-3UTR CAA 90 bp GCTGGTGGTGGTCTGTTTCAGCCATTTTCTTGCAACTGTGACCAAAATGTTAAGGCGCAGGCTTTGCATTaGTCGGCTGGATTGGGAGCC +
Preference number: 5 (lower is better)
Translates to: AGGGLFQPFSCNCDQNVKAQALH*SAGLGA
Trigger: GGCTCCCAATCCAGCCGACAAATGCAAAGCCTGCGC...CTTAACATTTTGGTCACAGTTGCAAGAAAATGGCTGAAACAGACCACCACCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CAA 90 bp GCAGGCATGAGAACCTTGAGGAGCTGCAGCTCAGATGGTCAGAGCCACGGGGAATTGTTGAGAATGTCATaGGCTTCTTGTAAGGTACTG +
Preference number: 5 (lower is better)
Translates to: AGMRTLRSCSSDGQSHGELLRMS*ASCKVL
Trigger: CAGTACCTTACAAGAAGCCAATGACATTCTCAACAA...TTCCCCGTGGCTCTGACCATCTGAGCTGCAGCTCCTCAAGGTTCTCATGCCTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027752.15
ENSMUST00000161744.2
CDS-3UTR CAA 90 bp GGCAGGCATGAGAACCTTGAGGAGCTGCAGCTCAGATGGTCAGAGCCACGGGGATATGAATCTTTCAGGTaGTTGAGAATGTCATTGGCT +
Preference number: 5 (lower is better)
Translates to: GRHENLEELQLRWSEPRGYESFR*LRMSLA
Trigger: AGCCAATGACATTCTCAACAACCTGAAAGATTCATA...TCCCCGTGGCTCTGACCATCTGAGCTGCAGCTCCTCAAGGTTCTCATGCCTGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161744.2
CDS TCA 90 bp CCTTCATTTCGTCTTTGGCTTTGTTCAGGGAGCCTTCGATCTCATTaGGCTTGTTCAGGTCCACTGTGTCCAGCTGTCCTAGCTGATCCA +
Preference number: 5 (lower is better)
Translates to: PSFRLWLCSGSLRSH*ACSGPLCPAVLADP
Trigger: TGGATCAGCTAGGACAGCTGGACACAGTGGACCTGAACAAGCTCAATGAGATCGAAGGCTCCCTGAACAAAGCCAAAGACGAAATGAAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 90 bp AGGACCGATTGTAGAAATAGTTCTCTTCACACTGGTCACAGCGATTaGCCACAAAGCCTTCCCTGCATTCACAACGGCCGTCCTCTTTAC +
Preference number: 5 (lower is better)
Translates to: RTDCRNSSLHTGHSD*PQSLPCIHNGRPLY
Trigger: GTAAAGAGGACGGCCGTTGTGAATGCAGGGAAGGCTTTGTGGGCAATCGCTGTGACCAGTGTGAAGAGAACTATTTCTACAATCGGTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 90 bp TTTGACTTCCTGAGCCTCACGGAGAAGGTCTGTCACCTCCCTTTCTaGTTCCTTAAGTCTGTCCTCAAAGGCTTGATCTGTCACCATGTC +
Preference number: 5 (lower is better)
Translates to: FDFLSLTEKVCHLPF*FLKSVLKGLICHHV
Trigger: GACATGGTGACAGATCAAGCCTTTGAGGACAGACTTAAGGAAGCAGAAAGGGAGGTGACAGACCTTCTCCGTGAGGCTCAGGAAGTCAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CAA 90 bp GAGGAAACCCTAAGCATCTTTGAGCCATGTTCTCCTGGGGACCCACATGTAACTAAGGTGTTCAGGCGATaGAGCGTCACTCTGATGTCA +
Preference number: 5 (lower is better)
Translates to: EETLSIFEPCSPGDPHVTKVFRR*SVTLMS
Trigger: TGACATCAGAGTGACGCTCAATCGCCTGAACACCTT...AGTTACATGTGGGTCCCCAGGAGAACATGGCTCAAAGATGCTTAGGGTTTCCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CAA 90 bp CGTGTGGGAAGGTTCCACAAACAAACGTTCCTAATCCCTTTACCCTGTCAGCTTTCTTCCGCGGCTGTCTaGTTATCGTTCACGCGTCTA +
Preference number: 5 (lower is better)
Translates to: RVGRFHKQTFLIPLPCQLSSAAV*LSFTRL
Trigger: TAGACGCGTGAACGATAACAAGACAGCCGCGGAAGA...AAGCTGACAGGGTAAAGGGATTAGGAACGTTTGTTTGTGGAACCTTCCCACACG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS TCA 90 bp ATTTTCTCCTGCCAGGGTCCTCAAAAGCAGATTATATGCCTCAGCTaGAGTCTCGTTGGCTGTCTTTGCCACTCGTACAATGTCATCGGC +
Preference number: 5 (lower is better)
Translates to: IFSCQGPQKQIICLS*SLVGCLCHSYNVIG
Trigger: GCCGATGACATTGTACGAGTGGCAAAGACAGCCAACGAGACTTCAGCTGAGGCATATAATCTGCTTTTGAGGACCCTGGCAGGAGAAAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 90 bp GGTCTTCTTGATGTCCTCCAGGTTGTGAATATCCTTAATGATCTCTaGTATGTCCCGGTTATAGTCCATGATGGCTGCCTCCTGCTTCCG +
Preference number: 5 (lower is better)
Translates to: GLLDVLQVVNILNDL*YVPVIVHDGCLLLP
Trigger: CGGAAGCAGGAGGCAGCCATCATGGACTATAACCGGGACATAGCAGAGATCATTAAGGATATTCACAACCTGGAGGACATCAAGAAGACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CAA 90 bp AATATGGGGAAAAGGAGATTTGCTCTTCTTTCATTGGTCAAGACCTTAGAGGACAGTCTCACAGGCCCATaGCTGCCCAGAGGGTCTCCA +
Preference number: 5 (lower is better)
Translates to: NMGKRRFALLSLVKTLEDSLTGP*LPRGSP
Trigger: TGGAGACCCTCTGGGCAGCAATGGGCCTGTGAGACT...GTCCTCTAAGGTCTTGACCAATGAAAGAAGAGCAAATCTCCTTTTCCCCATATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CCA 90 bp CCAGGGTCCTCAAAAGCAGATTATATGCCTCAGCTGAAGTCTCGTTaGCTGTCTTTGCCACTCGTACAATGTCATCGGCTTCCTGTTTAT +
Preference number: 5 (lower is better)
Translates to: PGSSKADYMPQLKSR*LSLPLVQCHRLPVY
Trigger: ATAAACAGGAAGCCGATGACATTGTACGAGTGGCAAAGACAGCCAACGAGACTTCAGCTGAGGCATATAATCTGCTTTTGAGGACCCTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CAA 90 bp AAGAGGAGGCAGAAGATGCAGAGCGGACATACTGGCCATCTCAATGCTACGATGTATGTACCACGGATCTaGATAGAGGTCAAGTTGTTC +
Preference number: 5 (lower is better)
Translates to: KRRQKMQSGHTGHLNATMYVPRI*IEVKLF
Trigger: GAACAACTTGACCTCTATCAAGATCCGTGGTACATA...CATCGTAGCATTGAGATGGCCAGTATGTCCGCTCTGCATCTTCTGCCTCCTCTT
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CAA 90 bp CGTGTGGGAAGGTTCCACAAACAAACGTTCCTAATCCCTTTACCCTGTCAGCTTTCTCGTTGGCTGTCTTaGCCACTCGTACAATGTCAT +
Preference number: 5 (lower is better)
Translates to: RVGRFHKQTFLIPLPCQLSRWLS*PLVQCH
Trigger: ATGACATTGTACGAGTGGCAAAGACAGCCAACGAGA...AAGCTGACAGGGTAAAGGGATTAGGAACGTTTGTTTGTGGAACCTTCCCACACG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CAA 90 bp CTCAAGTGTTCAGTCATCACATGCTCCCTTAGAAAACTGACCCGTGTGGGAAGGCCTGAGAGATGTTCTTaGCTTGTTCATACTTCCGGT +
Preference number: 5 (lower is better)
Translates to: LKCSVITCSLRKLTRVGRPERCS*LVHTSG
Trigger: ACCGGAAGTATGAACAAGCAAAGAACATCTCTCAGG...CCTTCCCACACGGGTCAGTTTTCTAAGGGAGCATGTGATGACTGAACACTTGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CAA 90 bp TACAGGTTATTGGAACTATACAATAAAGCAATGGCTGTGTCGAAGGAGTGTAATCAGCATAGTCTGGCTTaGCCACCAGGTGGTGTCGGC +
Preference number: 5 (lower is better)
Translates to: YRLLELYNKAMAVSKECNQHSLA*PPGGVG
Trigger: GCCGACACCACCTGGTGGCAAAGCCAGACTATGCTG...ATTACACTCCTTCGACACAGCCATTGCTTTATTGTATAGTTCCAATAACCTGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CAA 90 bp CTCAAGTGTTCAGTCATCACATGCTCCCTTAGAAAACTGACCCGTGTGGGAAGGTTGCATCTCTCACAGTaGAAGCCTTCAACATTGTCT +
Preference number: 5 (lower is better)
Translates to: LKCSVITCSLRKLTRVGRLHLSQ*KPSTLS
Trigger: AGACAATGTTGAAGGCTTCAACTGTGAGAGATGCAA...CCTTCCCACACGGGTCAGTTTTCTAAGGGAGCATGTGATGACTGAACACTTGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CAA 90 bp TTGACCCAAAGAATGCTGGTGGTGGTCTGTTTCAGCCATTTTCTTGCAACTGTGTCTGTCCTCAAAGGCTaGATCTGTCACCATGTCATC +
Preference number: 5 (lower is better)
Translates to: LTQRMLVVVCFSHFLATVSVLKG*ICHHVI
Trigger: GATGACATGGTGACAGATCAAGCCTTTGAGGACAGA...CACAGTTGCAAGAAAATGGCTGAAACAGACCACCACCAGCATTCTTTGGGTCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CAA 90 bp TGCTTGTTCATACTTCCGGTTAAGTTCTTCAATCTCCAGCGCAGTTTGATTTTCGCCAAGAGGGTCATGTaGTTTGGCTCCCCTGTAGAC +
Preference number: 5 (lower is better)
Translates to: CLFILPVKFFNLQRSLIFAKRVM*FGSPVD
Trigger: GTCTACAGGGGAGCCAAACAACATGACCCTCTTGGC...GAAAATCAAACTGCGCTGGAGATTGAAGAACTTAACCGGAAGTATGAACAAGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000163011.2
CDS-3UTR CAA 90 bp GCTGGTGGTGGTCTGTTTCAGCCATTTTCTTGCAACTGTGACCAAAATGTTAAGAATCTCCAGCGCAGTTaGATTTTCTCCTGCCAGGGT +
Preference number: 5 (lower is better)
Translates to: AGGGLFQPFSCNCDQNVKNLQRS*IFSCQG
Trigger: ACCCTGGCAGGAGAAAATCAAACTGCGCTGGAGATT...CTTAACATTTTGGTCACAGTTGCAAGAAAATGGCTGAAACAGACCACCACCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS TCA 90 bp TATTTACTCTCTGAAGGCGATCCATCAGATTTTGATCTACATCTTTaGCTTCCTGAGCCTCACGGAGAAGGTCTGTCACCTCCCTTTCTG +
Preference number: 5 (lower is better)
Translates to: YLLSEGDPSDFDLHL*LPEPHGEGLSPPFL
Trigger: CAGAAAGGGAGGTGACAGACCTTCTCCGTGAGGCTCAGGAAGTCAAAGATGTAGATCAAAATCTGATGGATCGCCTTCAGAGAGTAAATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027752.15
ENSMUST00000163011.2
CDS-3UTR CAA 90 bp GATGCCCTCAAGTGTTCAGTCATCACATGCTCCCTTAGAAAACTGACCCGTGTGGAATCTTTCAGGTTGTaGAGAATGTCATTGGCTTCT +
Preference number: 5 (lower is better)
Translates to: DALKCSVITCSLRKLTRVESFRL*RMSLAS
Trigger: AGAAGCCAATGACATTCTCAACAACCTGAAAGATTC...CACACGGGTCAGTTTTCTAAGGGAGCATGTGATGACTGAACACTTGAGGGCATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161744.2
CDS TCA 90 bp GCTTGTTCATACTTCCGGTTAAGTTCTTCAATCTCCAGCGCAGTTTaGTTTTCTCCTGCCAGGGTCCTCAAAAGCAGATTATATGCCTCA +
Preference number: 5 (lower is better)
Translates to: ACSYFRLSSSISSAV*FSPARVLKSRLYAS
Trigger: TGAGGCATATAATCTGCTTTTGAGGACCCTGGCAGGAGAAAATCAAACTGCGCTGGAGATTGAAGAACTTAACCGGAAGTATGAACAAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CAA 90 bp TACAGGTTATTGGAACTATACAATAAAGCAATGGCTGTGTCGAAGGAGTGTAATCCCAGGGCGAGCACTTaGCAAGGTGACATCATCCAA +
Preference number: 5 (lower is better)
Translates to: YRLLELYNKAMAVSKECNPRAST*QGDIIQ
Trigger: TTGGATGATGTCACCTTGCAAAGTGCTCGCCCTGGG...ATTACACTCCTTCGACACAGCCATTGCTTTATTGTATAGTTCCAATAACCTGTA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CAA 90 bp GCTGGTGGTGGTCTGTTTCAGCCATTTTCTTGCAACTGTGACCAAAATGTTAAGTATAAGGTCCAAGGCTaGGAGTTTCTCTTCTGTACC +
Preference number: 5 (lower is better)
Translates to: AGGGLFQPFSCNCDQNVKYKVQG*EFLFCT
Trigger: GGTACAGAAGAGAAACTCCAAGCCTTGGACCTTATA...CTTAACATTTTGGTCACAGTTGCAAGAAAATGGCTGAAACAGACCACCACCAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CAA 90 bp AGTTCCAAGACTAACACTAACAAAGCTTCAAGAATTAGTACTACTTGGGGAAAACACTGGTCACAGCGATaGCCCACAAAGCCTTCCCTG +
Preference number: 5 (lower is better)
Translates to: SSKTNTNKASRISTTWGKHWSQR*PTKPSL
Trigger: CAGGGAAGGCTTTGTGGGCAATCGCTGTGACCAGTG...TTTTCCCCAAGTAGTACTAATTCTTGAAGCTTTGTTAGTGTTAGTCTTGGAACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CAA 90 bp AACAATCTGTTCTGTGCGGCACCCCGCATTCTACAGCAGCCATTCTGTCCATTTTCAAAATCTTTCAGGTaGTTGAGAATGTCATTGGCT +
Preference number: 5 (lower is better)
Translates to: NNLFCAAPRILQQPFCPFSKSFR*LRMSLA
Trigger: AGCCAATGACATTCTCAACAACCTGAAAGATTTTGA...AAATGGACAGAATGGCTGCTGTAGAATGCGGGGTGCCGCACAGAACAGATTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS TCA 90 bp ACTTTTCACAGTCAACTCCGTATGTGTTATGTTTGCAGTTGCACATaGGTTTGTCAAACTCGTTCTTTACACACTCGCTGGCATGTCCGT +
Preference number: 5 (lower is better)
Translates to: TFHSQLRMCYVCSCT*VCQTRSLHTRWHVR
Trigger: ACGGACATGCCAGCGAGTGTGTAAAGAACGAGTTTGACAAACTCATGTGCAACTGCAAACATAACACATACGGAGTTGACTGTGAAAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CAA 90 bp AGTTCCAAGACTAACACTAACAAAGCTTCAAGAATTAGTACTACTTGGGGAAAACTCCACGGCCGGTCATaGAAGAAAGGCAGGCACTTT +
Preference number: 5 (lower is better)
Translates to: SSKTNTNKASRISTTWGKLHGRS*KKGRHF
Trigger: AAAGTGCCTGCCTTTCTTCAATGACCGGCCGTGGAG...TTTTCCCCAAGTAGTACTAATTCTTGAAGCTTTGTTAGTGTTAGTCTTGGAACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CAA 90 bp TTGACCCAAAGAATGCTGGTGGTGGTCTGTTTCAGCCATTTTCTTGCAACTGTGTTGTTGAGAATGTCATaGGCTTCTTGTAAGGTACTG +
Preference number: 5 (lower is better)
Translates to: LTQRMLVVVCFSHFLATVLLRMS*ASCKVL
Trigger: CAGTACCTTACAAGAAGCCAATGACATTCTCAACAA...CACAGTTGCAAGAAAATGGCTGAAACAGACCACCACCAGCATTCTTTGGGTCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027752.15
ENSMUST00000161744.2
CDS-3UTR CAA 90 bp GCTGGTGGTGGTCTGTTTCAGCCATTTTCTTGCAACTGTGACCAAAATGTTAAGAGAGATGTTCTTTGCTaGTTCATACTTCCGGTTAAG +
Preference number: 5 (lower is better)
Translates to: AGGGLFQPFSCNCDQNVKRDVLC*FILPVK
Trigger: CTTAACCGGAAGTATGAACAAGCAAAGAACATCTCT...CTTAACATTTTGGTCACAGTTGCAAGAAAATGGCTGAAACAGACCACCACCAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CAA 90 bp TACAGGTTATTGGAACTATACAATAAAGCAATGGCTGTGTCGAAGGAGTGTAATTCGATCTCATTGAGCTaGTTCAGGTCCACTGTGTCC +
Preference number: 5 (lower is better)
Translates to: YRLLELYNKAMAVSKECNSISLS*FRSTVS
Trigger: GGACACAGTGGACCTGAACAAGCTCAATGAGATCGA...ATTACACTCCTTCGACACAGCCATTGCTTTATTGTATAGTTCCAATAACCTGTA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CAA 90 bp TACAGGTTATTGGAACTATACAATAAAGCAATGGCTGTGTCGAAGGAGTGTAATGCCTTCATTTCGTCTTaGGCTTTGTTCAGGGAGCCT +
Preference number: 5 (lower is better)
Translates to: YRLLELYNKAMAVSKECNAFISS*ALFREP
Trigger: AGGCTCCCTGAACAAAGCCAAAGACGAAATGAAGGC...ATTACACTCCTTCGACACAGCCATTGCTTTATTGTATAGTTCCAATAACCTGTA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CAA 90 bp AGAAGTGGAGGAGAGACTTTATTAGGCAAAACCCTTTGTTCCTGGTTAAAGATGTTGAAGCCTTCAACATaGTCTTTGCAAACGCATCTT +
Preference number: 5 (lower is better)
Translates to: RSGGETLLGKTLCSWLKMLKPST*SLQTHL
Trigger: AAGATGCGTTTGCAAAGACAATGTTGAAGGCTTCAA...CATCTTTAACCAGGAACAAAGGGTTTTGCCTAATAAAGTCTCTCCTCCACTTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS-3UTR CAA 90 bp AGAAGTGGAGGAGAGACTTTATTAGGCAAAACCCTTTGTTCCTGGTTAAAGATGAAATCTTTCAGGTTGTaGAGAATGTCATTGGCTTCT +
Preference number: 5 (lower is better)
Translates to: RSGGETLLGKTLCSWLKMKSFRL*RMSLAS
Trigger: AGAAGCCAATGACATTCTCAACAACCTGAAAGATTT...CATCTTTAACCAGGAACAAAGGGTTTTGCCTAATAAAGTCTCTCCTCCACTTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 72 bp GGTGTCGGCCTGGTTGTTGTAGTCGGTCAGGAAGGCTaGCCCGTGTTGCAGGTGCTGCTGGCCGGCGTCGCA +
Preference number: 6 (lower is better)
Translates to: GVGLVVVVGQEG*PVLQVLLAGVA
Trigger: TGCGACGCCGGCCAGCAGCACCTGCAACACGGGGCAGCCTTCCTGACCGACTACAACAACCAGGCCGACACC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS TCA 72 bp CCGTGTTGCAGGTGCTGCTGGCCGGCGTCGCACAGGTaGCAGGACTTAGTGACTCCGGTCACCCCAGTCTGC +
Preference number: 6 (lower is better)
Translates to: PCCRCCWPASHR*QDLVTPVTPVC
Trigger: GCAGACTGGGGTGACCGGAGTCACTAAGTCCTGTCACCTGTGCGACGCCGGCCAGCAGCACCTGCAACACGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS TCA 72 bp AGTGGTTGGTCTCACAGCGCTCACAGTGCTGGCCGGTaGTGCCAGGCTGGCACTCACACTGCCCGGTGCGGA +
Preference number: 6 (lower is better)
Translates to: SGWSHSAHSAGR*CQAGTHTARCG
Trigger: TCCGCACCGGGCAGTGTGAGTGCCAGCCTGGCATCACCGGCCAGCACTGTGAGCGCTGTGAGACCAACCACT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 72 bp TTGAAGGCGGCATTAACAAACTCCGGCATGCAGCGCTaGGGCCGCCCGCCCTCATCCGCGCACTCGTCCATG +
Preference number: 6 (lower is better)
Translates to: LKAALTNSGMQR*GRPPSSAHSSM
Trigger: CATGGACGAGTGCGCGGATGAGGGCGGGCGGCCGCAGCGCTGCATGCCGGAGTTTGTTAATGCCGCCTTCAA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CCA 72 bp TCCTCTCTGCCTCATGGGCCTTGTTCTTGGCCTCCGTaGCGTCAGCGGCAGCATTGCCCAGCGCTAGCTGGG +
Preference number: 6 (lower is better)
Translates to: SSLPHGPCSWPP*RQRQHCPALAG
Trigger: CCCAGCTAGCGCTGGGCAATGCTGCCGCTGACGCCACGGAGGCCAAGAACAAGGCCCATGAGGCAGAGAGGA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CCA 72 bp CGCTGGCAATCCTCTCTGCCTCATGGGCCTTGTTCTTaGCCTCCGTGGCGTCAGCGGCAGCATTGCCCAGCG +
Preference number: 6 (lower is better)
Translates to: RWQSSLPHGPCS*PPWRQRQHCPA
Trigger: CGCTGGGCAATGCTGCCGCTGACGCCACGGAGGCCAAGAACAAGGCCCATGAGGCAGAGAGGATTGCCAGCG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 72 bp CGTATCCCACTGGACAGGTGCAGGACTCCACCCACGTaGCAGGGACTCCGGGCCCAGGGCGAGCACTTTGCA +
Preference number: 6 (lower is better)
Translates to: RIPLDRCRTPPT*QGLRAQGEHFA
Trigger: TGCAAAGTGCTCGCCCTGGGCCCGGAGTCCCTGCAACGTGGGTGGAGTCCTGCACCTGTCCAGTGGGATACG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 72 bp GCGCTGGCAATCCTCTCTGCCTCATGGGCCTTGTTCTaGGCCTCCGTGGCGTCAGCGGCAGCATTGCCCAGC +
Preference number: 6 (lower is better)
Translates to: ALAILSASWALF*ASVASAAALPS
Trigger: GCTGGGCAATGCTGCCGCTGACGCCACGGAGGCCAAGAACAAGGCCCATGAGGCAGAGAGGATTGCCAGCGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 90 bp TTCTGCACGGCGCTGGCAATCCTCTCTGCCTCATGGGCCTTGTTCTaGGCCTCCGTGGCGTCAGCGGCAGCATTGCCCAGCGCTAGCTGG +
Preference number: 6 (lower is better)
Translates to: FCTALAILSASWALF*ASVASAAALPSASW
Trigger: CCAGCTAGCGCTGGGCAATGCTGCCGCTGACGCCACGGAGGCCAAGAACAAGGCCCATGAGGCAGAGAGGATTGCCAGCGCCGTGCAGAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 72 bp TCTCACAGAACTGTCCCCCGTATCCCACTGGACAGGTaGAGGACTCCACCCACGTTGCAGGGACTCCGGGCC +
Preference number: 6 (lower is better)
Translates to: SHRTVPRIPLDR*RTPPTLQGLRA
Trigger: GGCCCGGAGTCCCTGCAACGTGGGTGGAGTCCTGCACCTGTCCAGTGGGATACGGGGGACAGTTCTGTGAGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 72 bp CACCGGGGCAGGGACAAGGCTGGCAGTCAGAGGAGGTaGCCAGGGTTGAGTCCCCATAGTACCCATCGCTAC +
Preference number: 6 (lower is better)
Translates to: HRGRDKAGSQRR*PGLSPHSTHRY
Trigger: GTAGCGATGGGTACTATGGGGACTCAACCCTGGGCACCTCCTCTGACTGCCAGCCTTGTCCCTGCCCCGGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CCA 72 bp ACTCGCCCGTCAGGCGGTTGCAGTTGCCAACCGCGTTaGGGTCTATGTTGTCGTTACACTGGCACGGGCGGC +
Preference number: 6 (lower is better)
Translates to: TRPSGGCSCQPR*GLCCRYTGTGG
Trigger: GCCGCCCGTGCCAGTGTAACGACAACATAGACCCCAACGCGGTTGGCAACTGCAACCGCCTGACGGGCGAGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 72 bp CTGGTTGTTGTAGTCGGTCAGGAAGGCTGCCCCGTGTaGCAGGTGCTGCTGGCCGGCGTCGCACAGGTGACA +
Preference number: 6 (lower is better)
Translates to: LVVVVGQEGCPV*QVLLAGVAQVT
Trigger: TGTCACCTGTGCGACGCCGGCCAGCAGCACCTGCAACACGGGGCAGCCTTCCTGACCGACTACAACAACCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 72 bp CACTCGCCCGTCAGGCGGTTGCAGTTGCCAACCGCGTaGGGGTCTATGTTGTCGTTACACTGGCACGGGCGG +
Preference number: 6 (lower is better)
Translates to: HSPVRRLQLPTA*GSMLSLHWHGR
Trigger: CCGCCCGTGCCAGTGTAACGACAACATAGACCCCAACGCGGTTGGCAACTGCAACCGCCTGACGGGCGAGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 72 bp CTGGCACTGTCCGGTCACCGGGTTACAGCTGCTCTGTaGCTGCACTGTCCCGTAGGGATTGCAGGCGCAGGC +
Preference number: 6 (lower is better)
Translates to: LALSGHRVTAAL*LHCPVGIAGAG
Trigger: GCCTGCGCCTGCAATCCCTACGGGACAGTGCAGCAACAGAGCAGCTGTAACCCGGTGACCGGACAGTGCCAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 72 bp TGCACGGCGCTGGCAATCCTCTCTGCCTCATGGGCCTaGTTCTTGGCCTCCGTGGCGTCAGCGGCAGCATTG +
Preference number: 6 (lower is better)
Translates to: CTALAILSASWA*FLASVASAAAL
Trigger: CAATGCTGCCGCTGACGCCACGGAGGCCAAGAACAAGGCCCATGAGGCAGAGAGGATTGCCAGCGCCGTGCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 90 bp TCCTCGGGCGGAGTCCCACACGTGTTGGTAGCCACCACGGTCACATaGAAGGCGGCATTAACAAACTCCGGCATGCAGCGCTGCGGCCGC +
Preference number: 6 (lower is better)
Translates to: SSGGVPHVLVATTVT*KAALTNSGMQRCGR
Trigger: GCGGCCGCAGCGCTGCATGCCGGAGTTTGTTAATGCCGCCTTCAATGTGACCGTGGTGGCTACCAACACGTGTGGGACTCCGCCCGAGGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 90 bp GGTGTCGGCCTGGTTGTTGTAGTCGGTCAGGAAGGCTGCCCCGTGTaGCAGGTGCTGCTGGCCGGCGTCGCACAGGTGACAGGACTTAGT +
Preference number: 6 (lower is better)
Translates to: GVGLVVVVGQEGCPV*QVLLAGVAQVTGLS
Trigger: ACTAAGTCCTGTCACCTGTGCGACGCCGGCCAGCAGCACCTGCAACACGGGGCAGCCTTCCTGACCGACTACAACAACCAGGCCGACACC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 90 bp GCATTCTTCTGCACGGCGCTGGCAATCCTCTCTGCCTCATGGGCCTaGTTCTTGGCCTCCGTGGCGTCAGCGGCAGCATTGCCCAGCGCT +
Preference number: 6 (lower is better)
Translates to: AFFCTALAILSASWA*FLASVASAAALPSA
Trigger: AGCGCTGGGCAATGCTGCCGCTGACGCCACGGAGGCCAAGAACAAGGCCCATGAGGCAGAGAGGATTGCCAGCGCCGTGCAGAAGAATGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 90 bp GGACTCCACCCACGTTGCAGGGACTCCGGGCCCAGGGCGAGCACTTaGCAAGGTGACATCATCCAAGTACCCAGCGCTCCTCTCGCTGTA +
Preference number: 6 (lower is better)
Translates to: GLHPRCRDSGPRAST*QGDIIQVPSAPLAV
Trigger: TACAGCGAGAGGAGCGCTGGGTACTTGGATGATGTCACCTTGCAAAGTGCTCGCCCTGGGCCCGGAGTCCCTGCAACGTGGGTGGAGTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 90 bp GCCTCATGGGCCTTGTTCTTGGCCTCCGTGGCGTCAGCGGCAGCATaGCCCAGCGCTAGCTGGGCCTCCCTTGTCTTCTCATTGGCTTCA +
Preference number: 6 (lower is better)
Translates to: ASWALFLASVASAAA*PSASWASLVFSLAS
Trigger: TGAAGCCAATGAGAAGACAAGGGAGGCCCAGCTAGCGCTGGGCAATGCTGCCGCTGACGCCACGGAGGCCAAGAACAAGGCCCATGAGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS TCA 72 bp CAGGGACTCCGGGCCCAGGGCGAGCACTTTGCAAGGTaGCATCATCCAAGTACCCAGCGCTCCTCTCGCTGT +
Preference number: 6 (lower is better)
Translates to: QGLRAQGEHFAR*HHPSTQRSSRC
Trigger: ACAGCGAGAGGAGCGCTGGGTACTTGGATGATGTCACCTTGCAAAGTGCTCGCCCTGGGCCCGGAGTCCCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS TCA 72 bp CCAGGGTCACAAGTACCGCAGTCGCGGCCAGACACATaGGGCAGACACTGGCACTGTCCGGTCACCGGGTTA +
Preference number: 6 (lower is better)
Translates to: PGSQVPQSRPDT*GRHWHCPVTGL
Trigger: TAACCCGGTGACCGGACAGTGCCAGTGTCTGCCTCATGTGTCTGGCCGCGACTGCGGTACTTGTGACCCTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 72 bp CCCAGGTGCAGCGTGAGGTTGATGGAGTTGGGGTACTaGACCCCGGCCAGCATAGTCTGGCTTTGCCACCAG +
Preference number: 6 (lower is better)
Translates to: PRCSVRLMELGY*TPASIVWLCHQ
Trigger: CTGGTGGCAAAGCCAGACTATGCTGGCCGGGGTGCAGTACCCCAACTCCATCAACCTCACGCTGCACCTGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 72 bp CACGTTGCAGGGACTCCGGGCCCAGGGCGAGCACTTTaGAAGGTGACATCATCCAAGTACCCAGCGCTCCTC +
Preference number: 6 (lower is better)
Translates to: HVAGTPGPGRAL*KVTSSKYPALL
Trigger: GAGGAGCGCTGGGTACTTGGATGATGTCACCTTGCAAAGTGCTCGCCCTGGGCCCGGAGTCCCTGCAACGTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 72 bp GGTGGCATTCTTCTGCACGGCGCTGGCAATCCTCTCTaGCTCATGGGCCTTGTTCTTGGCCTCCGTGGCGTC +
Preference number: 6 (lower is better)
Translates to: GGILLHGAGNPL*LMGLVLGLRGV
Trigger: GACGCCACGGAGGCCAAGAACAAGGCCCATGAGGCAGAGAGGATTGCCAGCGCCGTGCAGAAGAATGCCACC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CCA 72 bp GAGGCACGTCTCACAGAACTGTCCCCCGTATCCCACTaGACAGGTGCAGGACTCCACCCACGTTGCAGGGAC +
Preference number: 6 (lower is better)
Translates to: EARLTELSPVSH*TGAGLHPRCRD
Trigger: GTCCCTGCAACGTGGGTGGAGTCCTGCACCTGTCCAGTGGGATACGGGGGACAGTTCTGTGAGACGTGCCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CCA 72 bp AACCCAAAGTGGTTGGTCTCACAGCGCTCACAGTGCTaGCCGGTGATGCCAGGCTGGCACTCACACTGCCCG +
Preference number: 6 (lower is better)
Translates to: NPKWLVSQRSQC*PVMPGWHSHCP
Trigger: CGGGCAGTGTGAGTGCCAGCCTGGCATCACCGGCCAGCACTGTGAGCGCTGTGAGACCAACCACTTTGGGTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 72 bp GCAGACACTGGCACTGTCCGGTCACCGGGTTACAGCTaGTCTGTTGCTGCACTGTCCCGTAGGGATTGCAGG +
Preference number: 6 (lower is better)
Translates to: ADTGTVRSPGYS*SVAALSRRDCR
Trigger: CCTGCAATCCCTACGGGACAGTGCAGCAACAGAGCAGCTGTAACCCGGTGACCGGACAGTGCCAGTGTCTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 72 bp GGCTGGCACTCACACTGCCCGGTGCGGATGTCACACTaGCCATTGGTGGAACCCAAAGCATGGCAGTCACAC +
Preference number: 6 (lower is better)
Translates to: GWHSHCPVRMSH*PLVEPKAWQSH
Trigger: GTGTGACTGCCATGCTTTGGGTTCCACCAATGGGCAGTGTGACATCCGCACCGGGCAGTGTGAGTGCCAGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 72 bp CCAAACCCAAAGTGGTTGGTCTCACAGCGCTCACAGTaGTGGCCGGTGATGCCAGGCTGGCACTCACACTGC +
Preference number: 6 (lower is better)
Translates to: PNPKWLVSQRSQ*WPVMPGWHSHC
Trigger: GCAGTGTGAGTGCCAGCCTGGCATCACCGGCCAGCACTGTGAGCGCTGTGAGACCAACCACTTTGGGTTTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CCA 72 bp TCACACTGTGTGCTGAGAGAACCAACAGGGCTGCAGTaGCACGGAGAGCAGGCTTCAGTGTTCCCCAGGCGG +
Preference number: 6 (lower is better)
Translates to: SHCVLREPTGLQ*HGEQASVFPRR
Trigger: CCGCCTGGGGAACACTGAAGCCTGCTCTCCGTGCCACTGCAGCCCTGTTGGTTCTCTCAGCACACAGTGTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CCA 72 bp GCAAGGGCCTTGGCAGCATCGGCTCGAGCTAGGAGTTaGTCGGCGGTCTGCTGTTCAGCTTTCCCCTTCTCT +
Preference number: 6 (lower is better)
Translates to: ARALAASARARS*SAVCCSAFPFS
Trigger: AGAGAAGGGGAAAGCTGAACAGCAGACCGCCGACCAACTCCTAGCTCGAGCCGATGCTGCCAAGGCCCTTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027752.15
ENSMUST00000161744.2
CDS CCA 72 bp TCCGTGGCGTCAGCGGCAGCATTGCCCAGCGCTAGCTaGGCCTCCCTTGTCTTCTCATTGGCTTCAGCTATG +
Preference number: 6 (lower is better)
Translates to: SVASAAALPSAS*ASLVFSLASAM
Trigger: CATAGCTGAAGCCAATGAGAAGACAAGGGAGGCCCAGCTAGCGCTGGGCAATGCTGCCGCTGACGCCACGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 72 bp CTGCGTCCCTTCTTAGCAGCTTCTTCAGCAAGGGCCTaGGCAGCATCGGCTCGAGCTAGGAGTTGGTCGGCG +
Preference number: 6 (lower is better)
Translates to: LRPFLAASSARA*AASARARSWSA
Trigger: CGCCGACCAACTCCTAGCTCGAGCCGATGCTGCCAAGGCCCTTGCTGAAGAAGCTGCTAAGAAGGGACGCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027752.15
ENSMUST00000161744.2
CDS CAA 90 bp TCTTGCCGGCAGTGCCAGTCGGACAGTGCGTGCACACCACTTCCTTaGTCTTTGGGACAATGGCACAACTTGAGCCACCGGGGCAGGGAC +
Preference number: 6 (lower is better)
Translates to: SCRQCQSDSACTPLP*SLGQWHNLSHRGRD
Trigger: GTCCCTGCCCCGGTGGCTCAAGTTGTGCCATTGTCCCAAAGACAAAGGAAGTGGTGTGCACGCACTGTCCGACTGGCACTGCCGGCAAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 72 bp GCTGCACTGTCCCGTAGGGATTGCAGGCGCAGGCTTTaGATTTGTCGGCTGGATTGGGAGCCAGGGGATTTC +
Preference number: 6 (lower is better)
Translates to: AALSRRDCRRRL*ICRLDWEPGDF
Trigger: GAAATCCCCTGGCTCCCAATCCAGCCGACAAATGCAAAGCCTGCGCCTGCAATCCCTACGGGACAGTGCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CCA 72 bp TTGCCAACCGCGTTGGGGTCTATGTTGTCGTTACACTaGCACGGGCGGCACAGTCTCACAGGCCCATTGCTG +
Preference number: 6 (lower is better)
Translates to: LPTALGSMLSLH*HGRHSLTGPLL
Trigger: CAGCAATGGGCCTGTGAGACTGTGCCGCCCGTGCCAGTGTAACGACAACATAGACCCCAACGCGGTTGGCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CCA 72 bp CCGCCTTGGTACTGGTGGCATTCTTCTGCACGGCGCTaGCAATCCTCTCTGCCTCATGGGCCTTGTTCTTGG +
Preference number: 6 (lower is better)
Translates to: PPWYWWHSSARR*QSSLPHGPCSW
Trigger: CCAAGAACAAGGCCCATGAGGCAGAGAGGATTGCCAGCGCCGTGCAGAAGAATGCCACCAGTACCAAGGCGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 72 bp TGCACGCAGTACTCCTCGGGCGGAGTCCCACACGTGTaGGTAGCCACCACGGTCACATTGAAGGCGGCATTA +
Preference number: 6 (lower is better)
Translates to: CTQYSSGGVPHV*VATTVTLKAAL
Trigger: TAATGCCGCCTTCAATGTGACCGTGGTGGCTACCAACACGTGTGGGACTCCGCCCGAGGAGTACTGCGTGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 72 bp GCGCTCTCAGCAGTCGCCCTCCTCCACGGCCGGTCATaGAAGAAAGGCAGGCACTTTTCACAGTCAACTCCG +
Preference number: 6 (lower is better)
Translates to: ALSAVALLHGRS*KKGRHFSQSTP
Trigger: CGGAGTTGACTGTGAAAAGTGCCTGCCTTTCTTCAATGACCGGCCGTGGAGGAGGGCGACTGCTGAGAGCGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 72 bp AGGCGGTTGCAGTTGCCAACCGCGTTGGGGTCTATGTaGTCGTTACACTGGCACGGGCGGCACAGTCTCACA +
Preference number: 6 (lower is better)
Translates to: RRLQLPTALGSM*SLHWHGRHSLT
Trigger: TGTGAGACTGTGCCGCCCGTGCCAGTGTAACGACAACATAGACCCCAACGCGGTTGGCAACTGCAACCGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 90 bp ACCCCAGTCTGCACGCAGTACTCCTCGGGCGGAGTCCCACACGTGTaGGTAGCCACCACGGTCACATTGAAGGCGGCATTAACAAACTCC +
Preference number: 6 (lower is better)
Translates to: TPVCTQYSSGGVPHV*VATTVTLKAALTNS
Trigger: GGAGTTTGTTAATGCCGCCTTCAATGTGACCGTGGTGGCTACCAACACGTGTGGGACTCCGCCCGAGGAGTACTGCGTGCAGACTGGGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 90 bp AGGCAGACACTGGCACTGTCCGGTCACCGGGTTACAGCTGCTCTGTaGCTGCACTGTCCCGTAGGGATTGCAGGCGCAGGCTTTGCATTT +
Preference number: 6 (lower is better)
Translates to: RQTLALSGHRVTAAL*LHCPVGIAGAGFAF
Trigger: AAATGCAAAGCCTGCGCCTGCAATCCCTACGGGACAGTGCAGCAACAGAGCAGCTGTAACCCGGTGACCGGACAGTGCCAGTGTCTGCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 90 bp TCAGTGTTCCCCAGGCGGAAGAAATTCTCCCGGCACCTCTCGCACTaGGCACCATCTGTGTTATCCCGGCAGTTGGTACAGTGGCCACCA +
Preference number: 6 (lower is better)
Translates to: SVFPRRKKFSRHLSH*APSVLSRQLVQWPP
Trigger: TGGTGGCCACTGTACCAACTGCCGGGATAACACAGATGGTGCCAAGTGCGAGAGGTGCCGGGAGAATTTCTTCCGCCTGGGGAACACTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 90 bp TGTAAGGTACTGCGTCCCTTCTTAGCAGCTTCTTCAGCAAGGGCCTaGGCAGCATCGGCTCGAGCTAGGAGTTGGTCGGCGGTCTGCTGT +
Preference number: 6 (lower is better)
Translates to: CKVLRPFLAASSARA*AASARARSWSAVCC
Trigger: ACAGCAGACCGCCGACCAACTCCTAGCTCGAGCCGATGCTGCCAAGGCCCTTGCTGAAGAAGCTGCTAAGAAGGGACGCAGTACCTTACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027752.15
ENSMUST00000161744.2
CDS TCA 72 bp AAGGATCGCAGGAGCATGGCCTGCATCCTGCCTCAGTaGGGGAATGGAACCCAGGCTGACAACGGTCACACT +
Preference number: 6 (lower is better)
Translates to: KDRRSMACILPQ*GNGTQADNGHT
Trigger: AGTGTGACCGTTGTCAGCCTGGGTTCCATTCCCTCACTGAGGCAGGATGCAGGCCATGCTCCTGCGATCCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 72 bp TGCACTTCAGGCACTCGCCCGTCAGGCGGTTGCAGTTaGCAACCGCGTTGGGGTCTATGTTGTCGTTACACT +
Preference number: 6 (lower is better)
Translates to: CTSGTRPSGGCS*QPRWGLCCRYT
Trigger: AGTGTAACGACAACATAGACCCCAACGCGGTTGGCAACTGCAACCGCCTGACGGGCGAGTGCCTGAAGTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 72 bp GGAGTCCCACACGTGTTGGTAGCCACCACGGTCACATaGAAGGCGGCATTAACAAACTCCGGCATGCAGCGC +
Preference number: 6 (lower is better)
Translates to: GVPHVLVATTVT*KAALTNSGMQR
Trigger: GCGCTGCATGCCGGAGTTTGTTAATGCCGCCTTCAATGTGACCGTGGTGGCTACCAACACGTGTGGGACTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 72 bp CCCAGGCGGAAGAAATTCTCCCGGCACCTCTCGCACTaGGCACCATCTGTGTTATCCCGGCAGTTGGTACAG +
Preference number: 6 (lower is better)
Translates to: PRRKKFSRHLSH*APSVLSRQLVQ
Trigger: CTGTACCAACTGCCGGGATAACACAGATGGTGCCAAGTGCGAGAGGTGCCGGGAGAATTTCTTCCGCCTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 72 bp ATGCACTTCAGGCACTCGCCCGTCAGGCGGTTGCAGTaGCCAACCGCGTTGGGGTCTATGTTGTCGTTACAC +
Preference number: 6 (lower is better)
Translates to: MHFRHSPVRRLQ*PTALGSMLSLH
Trigger: GTGTAACGACAACATAGACCCCAACGCGGTTGGCAACTGCAACCGCCTGACGGGCGAGTGCCTGAAGTGCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 90 bp CACTCGCTGGCGCTCTCAGCAGTCGCCCTCCTCCACGGCCGGTCATaGAAGAAAGGCAGGCACTTTTCACAGTCAACTCCGTATGTGTTA +
Preference number: 6 (lower is better)
Translates to: HSLALSAVALLHGRS*KKGRHFSQSTPYVL
Trigger: TAACACATACGGAGTTGACTGTGAAAAGTGCCTGCCTTTCTTCAATGACCGGCCGTGGAGGAGGGCGACTGCTGAGAGCGCCAGCGAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 90 bp TCCCGGCACCTCTCGCACTTGGCACCATCTGTGTTATCCCGGCAGTaGGTACAGTGGCCACCATGTCCAGTGGAACGGTATAGTTCAGGA +
Preference number: 6 (lower is better)
Translates to: SRHLSHLAPSVLSRQ*VQWPPCPVERYSSG
Trigger: TCCTGAACTATACCGTTCCACTGGACATGGTGGCCACTGTACCAACTGCCGGGATAACACAGATGGTGCCAAGTGCGAGAGGTGCCGGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS TCA 72 bp TACAGCTGCATCTGCCGTAACTGTCACACTGTGTGCTaGGAGAACCAACAGGGCTGCAGTGGCACGGAGAGC +
Preference number: 6 (lower is better)
Translates to: YSCICRNCHTVC*ENQQGCSGTES
Trigger: GCTCTCCGTGCCACTGCAGCCCTGTTGGTTCTCTCAGCACACAGTGTGACAGTTACGGCAGATGCAGCTGTA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 72 bp AGTACTGATAAGGAATCCAGGGCCCGTCTTCCCGAGTaGGCTTATAGATGGCGAAGCTCTCTGGACGGCTGG +
Preference number: 6 (lower is better)
Translates to: STDKESRARLPE*AYRWRSSLDGW
Trigger: CCAGCCGTCCAGAGAGCTTCGCCATCTATAAGCGCACTCGGGAAGACGGGCCCTGGATTCCTTATCAGTACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 72 bp GGGGAAATGTCACTGAATTCATCAGTACACAAGGCCTaGTGCTCGTCCCCTCCGGTCCTGATGAAGCCACGG +
Preference number: 6 (lower is better)
Translates to: GEMSLNSSVHKA*CSSPPVLMKPR
Trigger: CCGTGGCTTCATCAGGACCGGAGGGGACGAGCAGCAGGCCTTGTGTACTGATGAATTCAGTGACATTTCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 72 bp TATAGATGCACTTCAGGCACTCGCCCGTCAGGCGGTTaGAGTTGCCAACCGCGTTGGGGTCTATGTTGTCGT +
Preference number: 6 (lower is better)
Translates to: YRCTSGTRPSGG*SCQPRWGLCCR
Trigger: ACGACAACATAGACCCCAACGCGGTTGGCAACTGCAACCGCCTGACGGGCGAGTGCCTGAAGTGCATCTATA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 72 bp TACAGCTGCTCTGTTGCTGCACTGTCCCGTAGGGATTaGAGGCGCAGGCTTTGCATTTGTCGGCTGGATTGG +
Preference number: 6 (lower is better)
Translates to: YSCSVAALSRRD*RRRLCICRLDW
Trigger: CCAATCCAGCCGACAAATGCAAAGCCTGCGCCTGCAATCCCTACGGGACAGTGCAGCAACAGAGCAGCTGTA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 72 bp GATCTCTGCTATGTCCCGGTTATAGTCCATGATGGCTaGCTCCTGCTTCCGAGCCTCGCTCTCCAGGTCAGA +
Preference number: 6 (lower is better)
Translates to: DLCYVPVIVHDG*LLLPSLALQVR
Trigger: TCTGACCTGGAGAGCGAGGCTCGGAAGCAGGAGGCAGCCATCATGGACTATAACCGGGACATAGCAGAGATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CCA 72 bp GTCTTCCCGAGTGCGCTTATAGATGGCGAAGCTCTCTaGACGGCTGGTGTGGAACTTGAGGCGCACGTAAGT +
Preference number: 6 (lower is better)
Translates to: VFPSALIDGEAL*TAGVELEAHVS
Trigger: ACTTACGTGCGCCTCAAGTTCCACACCAGCCGTCCAGAGAGCTTCGCCATCTATAAGCGCACTCGGGAAGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CCA 72 bp CCAGGCGGAAGAAATTCTCCCGGCACCTCTCGCACTTaGCACCATCTGTGTTATCCCGGCAGTTGGTACAGT +
Preference number: 6 (lower is better)
Translates to: PGGRNSPGTSRT*HHLCYPGSWYS
Trigger: ACTGTACCAACTGCCGGGATAACACAGATGGTGCCAAGTGCGAGAGGTGCCGGGAGAATTTCTTCCGCCTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CCA 72 bp TCACAAGGTTTGCAGCCTTCAGGTCCAAACCCAAAGTaGTTGGTCTCACAGCGCTCACAGTGCTGGCCGGTG +
Preference number: 6 (lower is better)
Translates to: SQGLQPSGPNPK*LVSQRSQCWPV
Trigger: CACCGGCCAGCACTGTGAGCGCTGTGAGACCAACCACTTTGGGTTTGGACCTGAAGGCTGCAAACCTTGTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CCA 72 bp CGCTCTCCAGGTCAGACACCTTCCTGTCCAGGTCGCTaGCCTTCATTTCGTCTTTGGCTTTGTTCAGGGAGC +
Preference number: 6 (lower is better)
Translates to: RSPGQTPSCPGR*PSFRLWLCSGS
Trigger: GCTCCCTGAACAAAGCCAAAGACGAAATGAAGGCCAGCGACCTGGACAGGAAGGTGTCTGACCTGGAGAGCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 72 bp CCATCGCTACATTTCTCACAGTGGGGGCCGGCTGTATaGTCTCTGCAGTCACAGACACCTGTCTCCGGGTCA +
Preference number: 6 (lower is better)
Translates to: PSLHFSQWGPAV*SLQSQTPVSGS
Trigger: TGACCCGGAGACAGGTGTCTGTGACTGCAGAGACAATACAGCCGGCCCCCACTGTGAGAAATGTAGCGATGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 72 bp CAGTGCCAGTCGGACAGTGCGTGCACACCACTTCCTTaGTCTTTGGGACAATGGCACAACTTGAGCCACCGG +
Preference number: 6 (lower is better)
Translates to: QCQSDSACTPLP*SLGQWHNLSHR
Trigger: CCGGTGGCTCAAGTTGTGCCATTGTCCCAAAGACAAAGGAAGTGGTGTGCACGCACTGTCCGACTGGCACTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 72 bp TCTGTAACTTCCCCGAAGGTTCTTTCTGCGTCCGCCTaGGTACTGGTGGCATTCTTCTGCACGGCGCTGGCA +
Preference number: 6 (lower is better)
Translates to: SVTSPKVLSASA*VLVAFFCTALA
Trigger: TGCCAGCGCCGTGCAGAAGAATGCCACCAGTACCAAGGCGGACGCAGAAAGAACCTTCGGGGAAGTTACAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 90 bp AGCTGGGCCTCCCTTGTCTTCTCATTGGCTTCAGCTATGGTCCGGTaGATGGCGGGAATTCTCCTTAGAGCTTCTTCCGCGGCTGTCTTG +
Preference number: 6 (lower is better)
Translates to: SWASLVFSLASAMVR*MAGILLRASSAAVL
Trigger: CAAGACAGCCGCGGAAGAAGCTCTAAGGAGAATTCCCGCCATCAACCGGACCATAGCTGAAGCCAATGAGAAGACAAGGGAGGCCCAGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS TCA 72 bp GTCCCCTCCGGTCCTGATGAAGCCACGGTTAGCCTTTaGGTACGTGTTCTCACAGGACCCACTGTAGTACTG +
Preference number: 6 (lower is better)
Translates to: VPSGPDEATVSL*VRVLTGPTVVL
Trigger: CAGTACTACAGTGGGTCCTGTGAGAACACGTACTCAAAGGCTAACCGTGGCTTCATCAGGACCGGAGGGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 72 bp GTTCAGGATCAAAGTAGCACTCTTGGGATCGGCCATTaGAGTCACAAGGAAGGCACTCGCTGGCGCTCTCAG +
Preference number: 6 (lower is better)
Translates to: VQDQSSTLGIGH*SHKEGTRWRSQ
Trigger: CTGAGAGCGCCAGCGAGTGCCTTCCTTGTGACTGCAATGGCCGATCCCAAGAGTGCTACTTTGATCCTGAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 72 bp CGCATCTTCCTGTTTCAACATTACACTCGTCTGTGCTaGCCGAAGGATCGCAGGAGCATGGCCTGCATCCTG +
Preference number: 6 (lower is better)
Translates to: RIFLFQHYTRLC*PKDRRSMACIL
Trigger: CAGGATGCAGGCCATGCTCCTGCGATCCTTCGGGCAGCACAGACGAGTGTAATGTTGAAACAGGAAGATGCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 72 bp TACATTTCTCACAGTGGGGGCCGGCTGTATTGTCTCTaGAGTCACAGACACCTGTCTCCGGGTCACAGGTCT +
Preference number: 6 (lower is better)
Translates to: YISHSGGRLYCL*SHRHLSPGHRS
Trigger: AGACCTGTGACCCGGAGACAGGTGTCTGTGACTGCAGAGACAATACAGCCGGCCCCCACTGTGAGAAATGTA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CCA 72 bp GGTACAGAGCACACACGGGCTATAAGGTCCAAGGCTTaGAGTTTCTCTTCTGTACCCTGGGAGGCACGTCTC +
Preference number: 6 (lower is better)
Translates to: GTEHTRAIRSKA*SFSSVPWEARL
Trigger: GAGACGTGCCTCCCAGGGTACAGAAGAGAAACTCCAAGCCTTGGACCTTATAGCCCGTGTGTGCTCTGTACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CCA 72 bp GATTGCAGGCGCAGGCTTTGCATTTGTCGGCTGGATTaGGAGCCAGGGGATTTCCGAAAAACCCTTCCTTGC +
Preference number: 6 (lower is better)
Translates to: DCRRRLCICRLD*EPGDFRKTLPC
Trigger: GCAAGGAAGGGTTTTTCGGAAATCCCCTGGCTCCCAATCCAGCCGACAAATGCAAAGCCTGCGCCTGCAATC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 72 bp CTCTCGCACTTGGCACCATCTGTGTTATCCCGGCAGTaGGTACAGTGGCCACCATGTCCAGTGGAACGGTAT +
Preference number: 6 (lower is better)
Translates to: LSHLAPSVLSRQ*VQWPPCPVERY
Trigger: ATACCGTTCCACTGGACATGGTGGCCACTGTACCAACTGCCGGGATAACACAGATGGTGCCAAGTGCGAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 72 bp GGATTGCAGGCGCAGGCTTTGCATTTGTCGGCTGGATaGGGAGCCAGGGGATTTCCGAAAAACCCTTCCTTG +
Preference number: 6 (lower is better)
Translates to: GLQAQALHLSAG*GARGFPKNPSL
Trigger: CAAGGAAGGGTTTTTCGGAAATCCCCTGGCTCCCAATCCAGCCGACAAATGCAAAGCCTGCGCCTGCAATCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS TCA 72 bp CTGTCACCATGTCATCCCCAGTGCCAAGGTTGGCGATaGGGCTCTCTAACTCCTGGAGTTTCACTCGATGCT +
Preference number: 6 (lower is better)
Translates to: LSPCHPQCQGWR*GSLTPGVSLDA
Trigger: AGCATCGAGTGAAACTCCAGGAGTTAGAGAGCCTCATCGCCAACCTTGGCACTGGGGATGACATGGTGACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS TCA 72 bp CCCTTGTCTTCTCATTGGCTTCAGCTATGGTCCGGTTaGTGGCGGGAATTCTCCTTAGAGCTTCTTCCGCGG +
Preference number: 6 (lower is better)
Translates to: PLSSHWLQLWSG*WREFSLELLPR
Trigger: CCGCGGAAGAAGCTCTAAGGAGAATTCCCGCCATCAACCGGACCATAGCTGAAGCCAATGAGAAGACAAGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 72 bp AAACGGGGAGAGAGCGGGCCTCCAAGGGTAATCCGTTaGTTCATGGAGCCTGAAGATGTACTTCACAGTGGT +
Preference number: 6 (lower is better)
Translates to: KRGESGPPRVIR*FMEPEDVLHSG
Trigger: ACCACTGTGAAGTACATCTTCAGGCTCCATGAAGCAACGGATTACCCTTGGAGGCCCGCTCTCTCCCCGTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 72 bp AGTTCACATCTCTTGCCGGCAGTGCCAGTCGGACAGTaGGTGCACACCACTTCCTTTGTCTTTGGGACAATG +
Preference number: 6 (lower is better)
Translates to: SSHLLPAVPVGQ*VHTTSFVFGTM
Trigger: CATTGTCCCAAAGACAAAGGAAGTGGTGTGCACGCACTGTCCGACTGGCACTGCCGGCAAGAGATGTGAACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CCA 72 bp TCTCGCACTTGGCACCATCTGTGTTATCCCGGCAGTTaGTACAGTGGCCACCATGTCCAGTGGAACGGTATA +
Preference number: 6 (lower is better)
Translates to: SRTWHHLCYPGS*YSGHHVQWNGI
Trigger: TATACCGTTCCACTGGACATGGTGGCCACTGTACCAACTGCCGGGATAACACAGATGGTGCCAAGTGCGAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CCA 72 bp ATAAGGTCCAAGGCTTGGAGTTTCTCTTCTGTACCCTaGGAGGCACGTCTCACAGAACTGTCCCCCGTATCC +
Preference number: 6 (lower is better)
Translates to: IRSKAWSFSSVP*EARLTELSPVS
Trigger: GGATACGGGGGACAGTTCTGTGAGACGTGCCTCCCAGGGTACAGAAGAGAAACTCCAAGCCTTGGACCTTAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 72 bp AGGTACAGAGCACACACGGGCTATAAGGTCCAAGGCTaGGAGTTTCTCTTCTGTACCCTGGGAGGCACGTCT +
Preference number: 6 (lower is better)
Translates to: RYRAHTGYKVQG*EFLFCTLGGTS
Trigger: AGACGTGCCTCCCAGGGTACAGAAGAGAAACTCCAAGCCTTGGACCTTATAGCCCGTGTGTGCTCTGTACCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 90 bp GCCCATTACAGGTACAGAGCACACACGGGCTATAAGGTCCAAGGCTaGGAGTTTCTCTTCTGTACCCTGGGAGGCACGTCTCACAGAACT +
Preference number: 6 (lower is better)
Translates to: AHYRYRAHTGYKVQG*EFLFCTLGGTSHRT
Trigger: AGTTCTGTGAGACGTGCCTCCCAGGGTACAGAAGAGAAACTCCAAGCCTTGGACCTTATAGCCCGTGTGTGCTCTGTACCTGTAATGGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 90 bp TTATCCAGATCTGTAACTTCCCCGAAGGTTCTTTCTGCGTCCGCCTaGGTACTGGTGGCATTCTTCTGCACGGCGCTGGCAATCCTCTCT +
Preference number: 6 (lower is better)
Translates to: LSRSVTSPKVLSASA*VLVAFFCTALAILS
Trigger: AGAGAGGATTGCCAGCGCCGTGCAGAAGAATGCCACCAGTACCAAGGCGGACGCAGAAAGAACCTTCGGGGAAGTTACAGATCTGGATAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS TCA 72 bp CGGATCTTGATAGAGGTCAAGTTGTTCAGGAGCTTCTaGAATTCAAACGGGGAGAGAGCGGGCCTCCAAGGG +
Preference number: 6 (lower is better)
Translates to: RILIEVKLFRSF*NSNGERAGLQG
Trigger: CCCTTGGAGGCCCGCTCTCTCCCCGTTTGAATTTCAGAAGCTCCTGAACAACTTGACCTCTATCAAGATCCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 72 bp GAAATGTCACTGAATTCATCAGTACACAAGGCCTGCTaGTCGTCCCCTCCGGTCCTGATGAAGCCACGGTTA +
Preference number: 6 (lower is better)
Translates to: EMSLNSSVHKAC*SSPPVLMKPRL
Trigger: TAACCGTGGCTTCATCAGGACCGGAGGGGACGAGCAGCAGGCCTTGTGTACTGATGAATTCAGTGACATTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 72 bp AAACGCATCTTCCTGTTTCAACATTACACTCGTCTGTaGTGCCCGAAGGATCGCAGGAGCATGGCCTGCATC +
Preference number: 6 (lower is better)
Translates to: KRIFLFQHYTRL*CPKDRRSMACI
Trigger: GATGCAGGCCATGCTCCTGCGATCCTTCGGGCAGCACAGACGAGTGTAATGTTGAAACAGGAAGATGCGTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CCA 72 bp TTGGCACCATCTGTGTTATCCCGGCAGTTGGTACAGTaGCCACCATGTCCAGTGGAACGGTATAGTTCAGGA +
Preference number: 6 (lower is better)
Translates to: LAPSVLSRQLVQ*PPCPVERYSSG
Trigger: TCCTGAACTATACCGTTCCACTGGACATGGTGGCCACTGTACCAACTGCCGGGATAACACAGATGGTGCCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 72 bp TCCCTTGTCTTCTCATTGGCTTCAGCTATGGTCCGGTaGATGGCGGGAATTCTCCTTAGAGCTTCTTCCGCG +
Preference number: 6 (lower is better)
Translates to: SLVFSLASAMVR*MAGILLRASSA
Trigger: CGCGGAAGAAGCTCTAAGGAGAATTCCCGCCATCAACCGGACCATAGCTGAAGCCAATGAGAAGACAAGGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 72 bp ACCTTCCTGTCCAGGTCGCTGGCCTTCATTTCGTCTTaGGCTTTGTTCAGGGAGCCTTCGATCTCATTGAGC +
Preference number: 6 (lower is better)
Translates to: TFLSRSLAFISS*ALFREPSISLS
Trigger: GCTCAATGAGATCGAAGGCTCCCTGAACAAAGCCAAAGACGAAATGAAGGCCAGCGACCTGGACAGGAAGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 90 bp GTCTGTCACCTCCCTTTCTGCTTCCTTAAGTCTGTCCTCAAAGGCTaGATCTGTCACCATGTCATCCCCAGTGCCAAGGTTGGCGATGAG +
Preference number: 6 (lower is better)
Translates to: VCHLPFCFLKSVLKG*ICHHVIPSAKVGDE
Trigger: CTCATCGCCAACCTTGGCACTGGGGATGACATGGTGACAGATCAAGCCTTTGAGGACAGACTTAAGGAAGCAGAAAGGGAGGTGACAGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 90 bp GACACCTTCCTGTCCAGGTCGCTGGCCTTCATTTCGTCTTTGGCTTaGTTCAGGGAGCCTTCGATCTCATTGAGCTTGTTCAGGTCCACT +
Preference number: 6 (lower is better)
Translates to: DTFLSRSLAFISSLA*FREPSISLSLFRST
Trigger: AGTGGACCTGAACAAGCTCAATGAGATCGAAGGCTCCCTGAACAAAGCCAAAGACGAAATGAAGGCCAGCGACCTGGACAGGAAGGTGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 90 bp AGGTCAGACACCTTCCTGTCCAGGTCGCTGGCCTTCATTTCGTCTTaGGCTTTGTTCAGGGAGCCTTCGATCTCATTGAGCTTGTTCAGG +
Preference number: 6 (lower is better)
Translates to: RSDTFLSRSLAFISS*ALFREPSISLSLFR
Trigger: CCTGAACAAGCTCAATGAGATCGAAGGCTCCCTGAACAAAGCCAAAGACGAAATGAAGGCCAGCGACCTGGACAGGAAGGTGTCTGACCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS TCA 72 bp AGGGTCATGTTGTTTGGCTCCCCTGTAGACTCTGGCTaGGTGATTGACACATTGGCGGCAGCCATTTTTGCT +
Preference number: 6 (lower is better)
Translates to: RVMLFGSPVDSG*VIDTLAAAIFA
Trigger: AGCAAAAATGGCTGCCGCCAATGTGTCAATCACTCAGCCAGAGTCTACAGGGGAGCCAAACAACATGACCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000027752.15
ENSMUST00000163011.2
CDS TCA 72 bp CGTCTTTGGCTTTGTTCAGGGAGCCTTCGATCTCATTaGGCTTGTTCAGGTCCACTGTGTCCAGCTGTCCTA +
Preference number: 6 (lower is better)
Translates to: RLWLCSGSLRSH*ACSGPLCPAVL
Trigger: TAGGACAGCTGGACACAGTGGACCTGAACAAGCTCAATGAGATCGAAGGCTCCCTGAACAAAGCCAAAGACG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 72 bp CTGTTTATGACGCTCTGCAAGCTTTCGGGCTTCTTCTaGCAAGAGGGTCATGTTGTTTGGCTCCCCTGTAGA +
Preference number: 6 (lower is better)
Translates to: LFMTLCKLSGFF*QEGHVVWLPCR
Trigger: TCTACAGGGGAGCCAAACAACATGACCCTCTTGGCAGAAGAAGCCCGAAAGCTTGCAGAGCGTCATAAACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 72 bp GATTATATGCCGCTCTGCAAGCTTTCGGGCTTCTTCTaGCAAGAGGGTCATGTTGTTTGGCTCCCCTGTAGA +
Preference number: 6 (lower is better)
Translates to: DYMPLCKLSGFF*QEGHVVWLPCR
Trigger: TCTACAGGGGAGCCAAACAACATGACCCTCTTGGCAGAAGAAGCCCGAAAGCTTGCAGAGCGGCATATAATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163011.2
CDS CAA 72 bp CTGTCCAGGTCGCTGGCCTTCATTTCGTCTTTGGCTTaGTTCAGGGAGCCTTCGATCTCATTGAGCTTGTTC +
Preference number: 6 (lower is better)
Translates to: LSRSLAFISSLA*FREPSISLSLF
Trigger: GAACAAGCTCAATGAGATCGAAGGCTCCCTGAACAAAGCCAAAGACGAAATGAAGGCCAGCGACCTGGACAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS TCA 72 bp CCTGCATTCACAACGGCCGTCCTCTTTACACTGGAGTaGAAGGGATCCTTCATGGTGACAGTCACAAGGTTT +
Preference number: 6 (lower is better)
Translates to: PAFTTAVLFTLE*KGSFMVTVTRF
Trigger: AAACCTTGTGACTGTCACCATGAAGGATCCCTTTCACTCCAGTGTAAAGAGGACGGCCGTTGTGAATGCAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 72 bp TGTAGAAATAGTTCTCTTCACACTGGTCACAGCGATTaGCCACAAAGCCTTCCCTGCATTCACAACGGCCGT +
Preference number: 6 (lower is better)
Translates to: CRNSSLHTGHSD*PQSLPCIHNGR
Trigger: ACGGCCGTTGTGAATGCAGGGAAGGCTTTGTGGGCAATCGCTGTGACCAGTGTGAAGAGAACTATTTCTACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 72 bp ATTATCCAGATCTGTAACTTCCCCGAAGGTTCTTTCTaGGTCCGCCTTGGTACTGGTGGCATTCTTCTGCAC +
Preference number: 6 (lower is better)
Translates to: IIQICNFPEGSF*VRLGTGGILLH
Trigger: GTGCAGAAGAATGCCACCAGTACCAAGGCGGACGCAGAAAGAACCTTCGGGGAAGTTACAGATCTGGATAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CCA 72 bp TATCCCGGCAGTTGGTACAGTGGCCACCATGTCCAGTaGAACGGTATAGTTCAGGATCAAAGTAGCACTCTT +
Preference number: 6 (lower is better)
Translates to: YPGSWYSGHHVQ*NGIVQDQSSTL
Trigger: AAGAGTGCTACTTTGATCCTGAACTATACCGTTCCACTGGACATGGTGGCCACTGTACCAACTGCCGGGATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 72 bp CTCCCTTTCTGCTTCCTTAAGTCTGTCCTCAAAGGCTaGATCTGTCACCATGTCATCCCCAGTGCCAAGGTT +
Preference number: 6 (lower is better)
Translates to: LPFCFLKSVLKG*ICHHVIPSAKV
Trigger: AACCTTGGCACTGGGGATGACATGGTGACAGATCAAGCCTTTGAGGACAGACTTAAGGAAGCAGAAAGGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 90 bp TCTGAAAGGTGGAGGAGATGTCATAAACACTGTAGCCAACAGCATTaGTGCACACAGAAGAATGGCCAAAGCAGAAGCAGGGTGTGCAGC +
Preference number: 6 (lower is better)
Translates to: SERWRRCHKHCSQQH*CTQKNGQSRSRVCS
Trigger: GCTGCACACCCTGCTTCTGCTTTGGCCATTCTTCTGTGTGCACAAATGCTGTTGGCTACAGTGTTTATGACATCTCCTCCACCTTTCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 90 bp CCCGGTCTCTTCGATAGTATTCCGGATATTCTGCAGTCGGCTAATTaGGCTATGCAGGCTGCTATTTACTCTCTGAAGGCGATCCATCAG +
Preference number: 6 (lower is better)
Translates to: PGLFDSIPDILQSAN*AMQAAIYSLKAIHQ
Trigger: CTGATGGATCGCCTTCAGAGAGTAAATAGCAGCCTGCATAGCCAAATTAGCCGACTGCAGAATATCCGGAATACTATCGAAGAGACCGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027752.15
ENSMUST00000163011.2
CDS CAA 90 bp GCCAGGGTCCTCAAAAGCAGATTATATGCCTCAGCTGAAGTCTCGTaGGCTGTCTTTGCCACTCGTACAATGTCATCGGCTTCCTGTTTA +
Preference number: 6 (lower is better)
Translates to: ARVLKSRLYASAEVS*AVFATRTMSSASCL
Trigger: TAAACAGGAAGCCGATGACATTGTACGAGTGGCAAAGACAGCCAACGAGACTTCAGCTGAGGCATATAATCTGCTTTTGAGGACCCTGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS TCA 72 bp TCCTCTTTACACTGGAGTGAAAGGGATCCTTCATGGTaGCAGTCACAAGGTTTGCAGCCTTCAGGTCCAAAC +
Preference number: 6 (lower is better)
Translates to: SSLHWSERDPSW*QSQGLQPSGPN
Trigger: GTTTGGACCTGAAGGCTGCAAACCTTGTGACTGTCACCATGAAGGATCCCTTTCACTCCAGTGTAAAGAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 72 bp GCGGGAATTCTCCTTAGAGCTTCTTCCGCGGCTGTCTaGTTATCGTTCACGCGTCTATCAAAATCTTTCAGG +
Preference number: 6 (lower is better)
Translates to: AGILLRASSAAV*LSFTRLSKSFR
Trigger: CCTGAAAGATTTTGATAGACGCGTGAACGATAACAAGACAGCCGCGGAAGAAGCTCTAAGGAGAATTCCCGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 90 bp CGGTTGATGGCGGGAATTCTCCTTAGAGCTTCTTCCGCGGCTGTCTaGTTATCGTTCACGCGTCTATCAAAATCTTTCAGGTTGTTGAGA +
Preference number: 6 (lower is better)
Translates to: RLMAGILLRASSAAV*LSFTRLSKSFRLLR
Trigger: TCTCAACAACCTGAAAGATTTTGATAGACGCGTGAACGATAACAAGACAGCCGCGGAAGAAGCTCTAAGGAGAATTCCCGCCATCAACCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 90 bp GCTATGCAGGCTGCTATTTACTCTCTGAAGGCGATCCATCAGATTTaGATCTACATCTTTGACTTCCTGAGCCTCACGGAGAAGGTCTGT +
Preference number: 6 (lower is better)
Translates to: AMQAAIYSLKAIHQI*IYIFDFLSLTEKVC
Trigger: ACAGACCTTCTCCGTGAGGCTCAGGAAGTCAAAGATGTAGATCAAAATCTGATGGATCGCCTTCAGAGAGTAAATAGCAGCCTGCATAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027752.15
ENSMUST00000163011.2
CDS CAA 90 bp TCAAAAGCAGATTATATGCCTCAGCTGAAGTCTCGTTGGCTGTCTTaGCCACTCGTACAATGTCATCGGCTTCCTGTTTATGACGCTCTG +
Preference number: 6 (lower is better)
Translates to: SKADYMPQLKSRWLS*PLVQCHRLPVYDAL
Trigger: CAGAGCGTCATAAACAGGAAGCCGATGACATTGTACGAGTGGCAAAGACAGCCAACGAGACTTCAGCTGAGGCATATAATCTGCTTTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 72 bp GATGTCCTCCAGGTTGTGAATATCCTTAATGATCTCTaGTATGTCCCGGTTATAGTCCATGATGGCTGCCTC +
Preference number: 6 (lower is better)
Translates to: DVLQVVNILNDL*YVPVIVHDGCL
Trigger: GAGGCAGCCATCATGGACTATAACCGGGACATAGCAGAGATCATTAAGGATATTCACAACCTGGAGGACATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 72 bp TGGAGGAGATGTCATAAACACTGTAGCCAACAGCATTaGTGCACACAGAAGAATGGCCAAAGCAGAAGCAGG +
Preference number: 6 (lower is better)
Translates to: WRRCHKHCSQQH*CTQKNGQSRSR
Trigger: CCTGCTTCTGCTTTGGCCATTCTTCTGTGTGCACAAATGCTGTTGGCTACAGTGTTTATGACATCTCCTCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 72 bp CTCAAAAGCAGATTATATGCCTCAGCTGAAGTCTCGTaGGCTGTCTTTGCCACTCGTACAATGTCATCGGCT +
Preference number: 6 (lower is better)
Translates to: LKSRLYASAEVS*AVFATRTMSSA
Trigger: AGCCGATGACATTGTACGAGTGGCAAAGACAGCCAACGAGACTTCAGCTGAGGCATATAATCTGCTTTTGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 90 bp GGCAGGCACTTTTCACAGTCAACTCCGTATGTGTTATGTTTGCAGTaGCACATGAGTTTGTCAAACTCGTTCTTTACACACTCGCTGGCA +
Preference number: 6 (lower is better)
Translates to: GRHFSQSTPYVLCLQ*HMSLSNSFFTHSLA
Trigger: TGCCAGCGAGTGTGTAAAGAACGAGTTTGACAAACTCATGTGCAACTGCAAACATAACACATACGGAGTTGACTGTGAAAAGTGCCTGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS GCA 72 bp AAGATCCCGGTCTCTTCGATAGTATTCCGGATATTCTaGAGTCGGCTAATTTGGCTATGCAGGCTGCTATTT +
Preference number: 6 (lower is better)
Translates to: KIPVSSIVFRIF*SRLIWLCRLLF
Trigger: AAATAGCAGCCTGCATAGCCAAATTAGCCGACTGCAGAATATCCGGAATACTATCGAAGAGACCGGGATCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027752.15
ENSMUST00000163011.2
CDS CCA 72 bp TCAAAAGCAGATTATATGCCTCAGCTGAAGTCTCGTTaGCTGTCTTTGCCACTCGTACAATGTCATCGGCTT +
Preference number: 6 (lower is better)
Translates to: SKADYMPQLKSR*LSLPLVQCHRL
Trigger: AAGCCGATGACATTGTACGAGTGGCAAAGACAGCCAACGAGACTTCAGCTGAGGCATATAATCTGCTTTTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 72 bp GCTGCTATTTACTCTCTGAAGGCGATCCATCAGATTTaGATCTACATCTTTGACTTCCTGAGCCTCACGGAG +
Preference number: 6 (lower is better)
Translates to: AAIYSLKAIHQI*IYIFDFLSLTE
Trigger: CTCCGTGAGGCTCAGGAAGTCAAAGATGTAGATCAAAATCTGATGGATCGCCTTCAGAGAGTAAATAGCAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027752.15
ENSMUST00000163011.2
CDS CAA 72 bp TTCGATAGTATTCCGGATATTCTGCAGTCGGCTAATTaGGCTATGCAGGCTGCTATTTACTCTCTGAAGGCG +
Preference number: 6 (lower is better)
Translates to: FDSIPDILQSAN*AMQAAIYSLKA
Trigger: CGCCTTCAGAGAGTAAATAGCAGCCTGCATAGCCAAATTAGCCGACTGCAGAATATCCGGAATACTATCGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027752.15
ENSMUST00000163011.2
CDS CAA 72 bp GATTATATGCCTCAGCTGAAGTCTCGTTGGCTGTCTTaGCCACTCGTACAATGTCATCGGCTTCCTGTTTAT +
Preference number: 6 (lower is better)
Translates to: DYMPQLKSRWLS*PLVQCHRLPVY
Trigger: ATAAACAGGAAGCCGATGACATTGTACGAGTGGCAAAGACAGCCAACGAGACTTCAGCTGAGGCATATAATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 90 bp TGCTTGTTCATACTTCCGGTTAAGTTCTTCAATCTCCAGCGCAGTTaGATTTTCTCCTGCCAGGGTCCTCAAAAGCAGATTATATGCCTC +
Preference number: 6 (lower is better)
Translates to: CLFILPVKFFNLQRS*IFSCQGPQKQIICL
Trigger: GAGGCATATAATCTGCTTTTGAGGACCCTGGCAGGAGAAAATCAAACTGCGCTGGAGATTGAAGAACTTAACCGGAAGTATGAACAAGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS TCA 72 bp TACTTCCGGTTAAGTTCTTCAATCTCCAGCGCAGTTTaGTTTTCTCCTGCCAGGGTCCTCAAAAGCAGATTA +
Preference number: 6 (lower is better)
Translates to: YFRLSSSISSAV*FSPARVLKSRL
Trigger: TAATCTGCTTTTGAGGACCCTGGCAGGAGAAAATCAAACTGCGCTGGAGATTGAAGAACTTAACCGGAAGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 72 bp ATACTTCCGGTTAAGTTCTTCAATCTCCAGCGCAGTTaGATTTTCTCCTGCCAGGGTCCTCAAAAGCAGATT +
Preference number: 6 (lower is better)
Translates to: ILPVKFFNLQRS*IFSCQGPQKQI
Trigger: AATCTGCTTTTGAGGACCCTGGCAGGAGAAAATCAAACTGCGCTGGAGATTGAAGAACTTAACCGGAAGTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 90 bp TCACAGTCAACTCCGTATGTGTTATGTTTGCAGTTGCACATGAGTTaGTCAAACTCGTTCTTTACACACTCGCTGGCATGTCCGTTACAT +
Preference number: 6 (lower is better)
Translates to: SQSTPYVLCLQLHMS*SNSFFTHSLACPLH
Trigger: ATGTAACGGACATGCCAGCGAGTGTGTAAAGAACGAGTTTGACAAACTCATGTGCAACTGCAAACATAACACATACGGAGTTGACTGTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 90 bp AATCCAGGTTTGCATCTCTCACAGTTGAAGCCTTCAACATTGTCTTaGCAAACGCATCTTCCTGTTTCAACATTACACTCGTCTGTGCTG +
Preference number: 6 (lower is better)
Translates to: NPGLHLSQLKPSTLS*QTHLPVSTLHSSVL
Trigger: CAGCACAGACGAGTGTAATGTTGAAACAGGAAGATGCGTTTGCAAAGACAATGTTGAAGGCTTCAACTGTGAGAGATGCAAACCTGGATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 90 bp TCGTTCACGCGTCTATCAAAATCTTTCAGGTTGTTGAGAATGTCATaGGCTTCTTGTAAGGTACTGCGTCCCTTCTTAGCAGCTTCTTCA +
Preference number: 6 (lower is better)
Translates to: SFTRLSKSFRLLRMS*ASCKVLRPFLAASS
Trigger: TGAAGAAGCTGCTAAGAAGGGACGCAGTACCTTACAAGAAGCCAATGACATTCTCAACAACCTGAAAGATTTTGATAGACGCGTGAACGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS TCA 72 bp AGTCAACTCCGTATGTGTTATGTTTGCAGTTGCACATaGGTTTGTCAAACTCGTTCTTTACACACTCGCTGG +
Preference number: 6 (lower is better)
Translates to: SQLRMCYVCSCT*VCQTRSLHTRW
Trigger: CCAGCGAGTGTGTAAAGAACGAGTTTGACAAACTCATGTGCAACTGCAAACATAACACATACGGAGTTGACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 72 bp ACTCCGTATGTGTTATGTTTGCAGTTGCACATGAGTTaGTCAAACTCGTTCTTTACACACTCGCTGGCATGT +
Preference number: 6 (lower is better)
Translates to: TPYVLCLQLHMS*SNSFFTHSLAC
Trigger: ACATGCCAGCGAGTGTGTAAAGAACGAGTTTGACAAACTCATGTGCAACTGCAAACATAACACATACGGAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 90 bp AAGAAAGGCAGGCACTTTTCACAGTCAACTCCGTATGTGTTATGTTaGCAGTTGCACATGAGTTTGTCAAACTCGTTCTTTACACACTCG +
Preference number: 6 (lower is better)
Translates to: KKGRHFSQSTPYVLC*QLHMSLSNSFFTHS
Trigger: CGAGTGTGTAAAGAACGAGTTTGACAAACTCATGTGCAACTGCAAACATAACACATACGGAGTTGACTGTGAAAAGTGCCTGCCTTTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 72 bp CGTCTATCAAAATCTTTCAGGTTGTTGAGAATGTCATaGGCTTCTTGTAAGGTACTGCGTCCCTTCTTAGCA +
Preference number: 6 (lower is better)
Translates to: RLSKSFRLLRMS*ASCKVLRPFLA
Trigger: TGCTAAGAAGGGACGCAGTACCTTACAAGAAGCCAATGACATTCTCAACAACCTGAAAGATTTTGATAGACG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 72 bp AGGCACTTTTCACAGTCAACTCCGTATGTGTTATGTTaGCAGTTGCACATGAGTTTGTCAAACTCGTTCTTT +
Preference number: 6 (lower is better)
Translates to: RHFSQSTPYVLC*QLHMSLSNSFF
Trigger: AAAGAACGAGTTTGACAAACTCATGTGCAACTGCAAACATAACACATACGGAGTTGACTGTGAAAAGTGCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15
CDS CAA 72 bp GCTAAATATGAATCTTTCAGGTTGTTGAGAATGTCATaGGCTTCTTGTAAGGTACTGCGTCCCTTCTTAGCA +
Preference number: 6 (lower is better)
Translates to: AKYESFRLLRMS*ASCKVLRPFLA
Trigger: TGCTAAGAAGGGACGCAGTACCTTACAAGAAGCCAATGACATTCTCAACAACCTGAAAGATTCATATTTAGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161744.2
CDS CAA 72 bp TTTTCACAGTCAACTCCGTATGTGTTATGTTTGCAGTaGCACATGAGTTTGTCAAACTCGTTCTTTACACAC +
Preference number: 6 (lower is better)
Translates to: FSQSTPYVLCLQ*HMSLSNSFFTH
Trigger: GTGTGTAAAGAACGAGTTTGACAAACTCATGTGCAACTGCAAACATAACACATACGGAGTTGACTGTGAAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027752.15