RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LAMB3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026639

Ensembl transcript IDs: ENSMUST00000016315.16, ENSMUST00000159955.2, ENSMUST00000192322.6, ENSMUST00000194677.6

Found 305 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 72 bp GTCCCAGACTCTACCACAGTGGAGGGCAGGAGGAGTTaGTGTTGGGGGCACATTGTCCATTCCAGCTGGAGG +
Preference number: 3 (lower is better)
Translates to: VPDSTTVEGRRS*CWGHIVHSSWR
Trigger: CCTCCAGCTGGAATGGACAATGTGCCCCCAACACCAACTCCTCCTGCCCTCCACTGTGGTAGAGTCTGGGAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
3UTR CCA 72 bp GACTCTACCACAGTGGAGGGCAGGAGGAGTTGGTGTTaGGGGCACATTGTCCATTCCAGCTGGAGGGTTTTC +
Preference number: 3 (lower is better)
Translates to: DSTTVEGRRSWC*GHIVHSSWRVF
Trigger: GAAAACCCTCCAGCTGGAATGGACAATGTGCCCCCAACACCAACTCCTCCTGCCCTCCACTGTGGTAGAGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
3UTR CCA 72 bp GTTCCGTTTTTGAGTTGGTCCCAGACTCTACCACAGTaGAGGGCAGGAGGAGTTGGTGTTGGGGGCACATTG +
Preference number: 3 (lower is better)
Translates to: VPFLSWSQTLPQ*RAGGVGVGGTL
Trigger: CAATGTGCCCCCAACACCAACTCCTCCTGCCCTCCACTGTGGTAGAGTCTGGGACCAACTCAAAAACGGAAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR TCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCCGCAGGGCCATGAGCTaGGCTCCTCCGGTGCCTCCT +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCRRAMS*APPVPP
Trigger: AGGAGGCACCGGAGGAGCTCAGCTCATGGCCCTGCG...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR TCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCCTAGGCGCAGGGCCATaGGCTGAGCTCCTCCGGTGC +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCLGAGP*AELLRC
Trigger: GCACCGGAGGAGCTCAGCTCATGGCCCTGCGCCTAG...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR GCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCCTGCCGGGCCTGCATTaGCTGGGCCTGCTCCTCCTG +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCLPGLH*LGLLLL
Trigger: CAGGAGGAGCAGGCCCAGGCAATGCAGGCCCGGCAG...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR GCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCGCAAGCTGCCGGGCCTaGATTGCCTGGGCCTGCTCC +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCASCRA*IAWACS
Trigger: GGAGCAGGCCCAGGCAATGCAGGCCCGGCAGCTTGC...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCCGCAGCCCAGGCCGCTaGCCAGCTTCCAGTGGGAAG +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCRSPGR*PASSGK
Trigger: CTTCCCACTGGAAGCTGGCCAGCGGCCTGGGCTGCG...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR TCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCGCGCAGCACTGTGGCTaGGTCTGTGGGCAGCCAGAG +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCAQHCG*VCGQPE
Trigger: CTCTGGCTGCCCACAGACTCAGCCACAGTGCTGCGC...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR GCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCAGCGCTCGCAGTTCTTaGCCTCGGTGTGGTCCCGGC +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCSARSS*PRCGPG
Trigger: GCCGGGACCACACCGAGGGCAAGAACTGCGAGCGCT...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR GCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCGCTGAGCTCCTCCGGTaGCTCCTCCTCCAGCCTGTC +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCAELLR*LLLQPV
Trigger: GACAGGCTGGAGGAGGAGGCACCGGAGGAGCTCAGC...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR GCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCCTGGCTGGCACCCTCTaGAAGCTGCCGGGCCTGCAT +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCLAGTL*KLPGLH
Trigger: ATGCAGGCCCGGCAGCTTGCAGAGGGTGCCAGCCAG...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCAGGCCCCTTTGGCTCTaGGCAGGGCTCCCCTGCAGT +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCRPLWL*AGLPCS
Trigger: ACTGCAGGGGAGCCCTGCCCAGAGCCAAAGGGGCCT...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCCGTGGGCTCGGCTTCTaGCCTGCTCAGCCTCAGCCT +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCRGLGF*PAQPQP
Trigger: AGGCTGAGGCTGAGCAGGCCAGAAGCCGAGCCCACG...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR TCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCCCCGGACCTGTTGGATaGGAAGCCGTGTGCGCTGGA +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCPGPVG*EAVCAG
Trigger: TCCAGCGCACACGGCTTCTCATCCAACAGGTCCGGG...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR TCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCCCAGCACTGCCTCGCTaGCCTGTTGGATGGTGGCTG +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCPALPR*PVGWWL
Trigger: CAGCCACCATCCAACAGGTCAGCGAGGCAGTGCTGG...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR TCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCCCCAGCACAGGACTCTaGCCCAGCCGGTCCTTCAAC +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCPSTGL*PSRSFN
Trigger: GTTGAAGGACCGGCTGGGTCAGAGTCCTGTGCTGGG...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR GCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCCCTCGGGAGCAGGCTTaGTGGGCACACAGGAAGCCA +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCPREQA*WAHRKP
Trigger: TGGCTTCCTGTGTGCCCAGCAAGCCTGCTCCCGAGG...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR GCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCGGCCCTCTGCTTCCCTaGGACTGTCCCTCAACTGGC +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCGPLLP*DCPSTG
Trigger: GCCAGTTGAGGGACAGTCGCAGGGAAGCAGAGGGCC...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR GCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCTGGGCAGGGCTCCCCTaGAGTGAGAGCCACAAGCTG +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCWAGLP*SESHKL
Trigger: CAGCTTGTGGCTCTCACTGCAGGGGAGCCCTGCCCA...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCTTGGGCTGGCCCTGGTaGACCTGGGGAAAGGTGCTG +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCLGWPW*TWGKVL
Trigger: CAGCACCTTTCCCCAGGTCCACCAGGGCCAGCCCAA...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCCGTCCTGCCAGTTCTTaGGCTGGCCCTGGTGGACCT +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCRPASS*AGPGGP
Trigger: AGGTCCACCAGGGCCAGCCCAAGAACTGGCAGGACG...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR TCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCCTGCAGAACTACACGTaGGGCCGCCAAACCCTTCCC +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCLQNYT*GRQTLP
Trigger: GGGAAGGGTTTGGCGGCCTCACGTGTAGTTCTGCAG...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR TCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCAGGGCTCCCCTGCAGTaGGAGCCACAAGCTGTACCA +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCRAPLQ*EPQAVP
Trigger: TGGTACAGCTTGTGGCTCTCACTGCAGGGGAGCCCT...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR TCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCCCCTGCATTGTGTCCTaGGCTTCCTGCAGAGCCACG +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCPCIVS*ASCRAT
Trigger: CGTGGCTCTGCAGGAAGCTCAGGACACAATGCAGGG...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR GCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCGGTGTCCTGGCCCTCTaGAGGTCTCCATGGACGGTT +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCGVLAL*RSPWTV
Trigger: AACCGTCCATGGAGACCTGCAGAGGGCCAGGACACC...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR GCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCGGGAGCTTAGGGAGTTaGGAGGGTCACAGGCACAGG +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCGSLGS*EGHRHR
Trigger: CCTGTGCCTGTGACCCTCGCAACTCCCTAAGCTCCC...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR GCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCTCTCTCCAGGCCCTCTaGTTCCCTGCGACTGTCCCT +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCSLQAL*FPATVP
Trigger: AGGGACAGTCGCAGGGAAGCAGAGGGCCTGGAGAGA...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR GCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCCAGCCCCGACAGGTCTaGAGAGCGCAGCATGATAGC +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCQPRQV*RAQHDS
Trigger: GCTATCATGCTGCGCTCTGCAGACCTGTCGGGGCTG...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCCAAGTCCCCCACAGGTaGATAACAGGCCCCTCGGGA +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCQVPHR*ITGPSG
Trigger: TCCCGAGGGGCCTGTTATCCACCTGTGGGGGACTTG...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCACTGCCACCAGCGCATaGGGCCTGAAGACGATGCGA +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCTATSA*GLKTMR
Trigger: TCGCATCGTCTTCAGGCCCCATGCGCTGGTGGCAGT...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCCCTGGGGAAAGGTGCTaGCACAGTCTGTCGCCAGGT +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCPGERC*HSLSPG
Trigger: ACCTGGCGACAGACTGTGCCAGCACCTTTCCCCAGG...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCTTCTTGGGCTGGCCCTaGTGGACCTGGGGAAAGGTG +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCFLGWP*WTWGKV
Trigger: CACCTTTCCCCAGGTCCACCAGGGCCAGCCCAAGAA...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCAAAGTAGGCGCTGGGTaGATAGGAGCCCCTCTGGGG +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCKVGAG*IGAPLG
Trigger: CCCCAGAGGGGCTCCTATCCACCCAGCGCCTACTTT...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCCACCTTTGGCACTCGTaGGTGTCCTGGCCCTCTGCA +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCHLWHS*VSWPSA
Trigger: TGCAGAGGGCCAGGACACCCACGAGTGCCAAAGGTG...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCCTGGCCAGCTTCCAGTaGGAAGGGGCACACTGGTCA +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCLASFQ*EGAHWS
Trigger: TGACCAGTGTGCCCCTTCCCACTGGAAGCTGGCCAG...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCAAGCCCCGGACCTGTTaGATGAGAAGCCGTGTGCGC +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCKPRTC*MRSRVR
Trigger: GCGCACACGGCTTCTCATCCAACAGGTCCGGGGCTT...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCTCTTGCGCAGCACTGTaGCTGAGTCTGTGGGCAGCC +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCSCAAL*LSLWAA
Trigger: GGCTGCCCACAGACTCAGCCACAGTGCTGCGCAAGA...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR TCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCGCTGAGTCCTTCCAATaGGCAAGTCCCCCACAGGTG +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCAESFQ*ASPPQV
Trigger: CACCTGTGGGGGACTTGCTCATTGGAAGGACTCAGC...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR TCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCGCTCACATCATTCTGTaGCTGCCACCAGCGCATGGG +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCAHIIL*LPPAHG
Trigger: CCCATGCGCTGGTGGCAGTCACAGAATGATGTGAGC...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR TCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCGCATTACGGAGACTGTaGAGGCGTCGAGCTTGCTCC +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCALRRL*RRRACS
Trigger: GGAGCAAGCTCGACGCCTTCACAGTCTCCGTAATGC...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR TCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCCGCAGCATGATAGCCTaGCTCCCTCGAAGCAGCTCT +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCRSMIA*LPRSSS
Trigger: AGAGCTGCTTCGAGGGAGTCAGGCTATCATGCTGCG...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR GCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCGGGAGCTCCCTGGACTaGTCCATCTGGATCACACTC +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCGSSLD*SIWITL
Trigger: GAGTGTGATCCAGATGGAGCAGTCCAGGGAGCTCCC...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR GCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCGAACTGTCAGACACTTaGTGTGCAGCCCGGGAGGAC +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCELSDT*CAARED
Trigger: GTCCTCCCGGGCTGCACAGCAAGTGTCTGACAGTTC...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR GCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCGCTGCCCTGATCATTTaGCTGGTCTGCTGGAGCTGG +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCAALII*LVCWSW
Trigger: CCAGCTCCAGCAGACCAGGCAAATGATCAGGGCAGC...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR GCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCCCAGAGAGCCAGCACTaGCTCGCTGACCTGTTGGAT +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCPESQH*LADLLD
Trigger: ATCCAACAGGTCAGCGAGGCAGTGCTGGCTCTCTGG...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR GCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCTGGGCATTCATTGCCTaGTGGCTGGCACCCTCTGCA +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCWAFIA*WLAPSA
Trigger: TGCAGAGGGTGCCAGCCAGCAGGCAATGAATGCCCA...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCCTGCAAAGTAGGCGCTaGGTGGATAGGAGCCCCTCT +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCLQSRR*VDRSPS
Trigger: AGAGGGGCTCCTATCCACCCAGCGCCTACTTTGCAG...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCACAGCTGGGTCGAAGTaGCAGGTCTCTGAGTGCCCA +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCTAGSK*QVSECP
Trigger: TGGGCACTCAGAGACCTGCCACTTCGACCCAGCTGT...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCGGCAGCAAACACAGCTaGGTCGAAGTGGCAGGTCTC +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCGSKHS*VEVAGL
Trigger: GAGACCTGCCACTTCGACCCAGCTGTGTTTGCTGCC...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCTGGGAAGGGGCACACTaGTCACATTTGGGGCCCACT +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCWEGAH*SHLGPT
Trigger: AGTGGGCCCCAAATGTGACCAGTGTGCCCCTTCCCA...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCCGAGAAGCCAGGCCATaGTCTTCCAGACCTGTCCCT +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCREARP*SSRPVP
Trigger: AGGGACAGGTCTGGAAGACCATGGCCTGGCTTCTCG...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCGCCTCGCTGACCTGTTaGATGGTGGCTGCATCTGTG +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCASLTC*MVAASV
Trigger: CACAGATGCAGCCACCATCCAACAGGTCAGCGAGGC...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR TCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCGAAGTGGCAGGTCTCTaGGTGCCCATTGCAGTCACA +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCEVAGL*VPIAVT
Trigger: TGTGACTGCAATGGGCACTCAGAGACCTGCCACTTC...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR TCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCGGTACAAGGACCTGCTaGACCTCACCAACCCTTTCC +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCGTRTC*TSPTLS
Trigger: GGAAAGGGTTGGTGAGGTTCAGCAGGTCCTTGTACC...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR GCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCACATCATTCTGTGACTaGCACCAGCGCATGGGGCCT +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCTSFCD*HQRMGP
Trigger: AGGCCCCATGCGCTGGTGGCAGTCACAGAATGATGT...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR GCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCGGGCACCTAAGATACTaGAGTCACAGGCATGGCAGC +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCGHLRY*SHRHGS
Trigger: GCTGCCATGCCTGTGACTGCAGTATCTTAGGTGCCC...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR GCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCAAGCCATGGTCAGCATaGGGAAGGCTCCTGAAGGGT +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCKPWSA*GRLLKG
Trigger: ACCCTTCAGGAGCCTTCCGCATGCTGACCATGGCTT...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCCCTCCATTTGTCCCCTaGCTGGCAGCAAACACAGCT +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCPPFVP*LAANTA
Trigger: AGCTGTGTTTGCTGCCAGCCAGGGGACAAATGGAGG...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCTCACAGGGAGCTCCCTaGACTGCTCCATCTGGATCA +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCSQGAP*TAPSGS
Trigger: TGATCCAGATGGAGCAGTCCAGGGAGCTCCCTGTGA...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCTCTTTGCACACACACTaGCCCGTCAGTCGGTCACAG +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCSLHTH*PVSRSQ
Trigger: CTGTGACCGACTGACGGGCCAGTGTGTGTGCAAAGA...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCGTCTGGTCAGGACACTaGCGGATGGCTGCAGAACTA +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCVWSGH*RMAAEL
Trigger: TAGTTCTGCAGCCATCCGCCAGTGTCCTGACCAGAC...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCCCATCAGCAAGCGGCTaGTACTCACCTGGGTCTCAA +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCPSASG*YSPGSQ
Trigger: TTGAGACCCAGGTGAGTACCAGCCGCTTGCTGATGG...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCAGAAGCCGTGTGCGCTaGACATCTTCCTCCATCAGC +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCRSRVR*TSSSIS
Trigger: GCTGATGGAGGAAGATGTCCAGCGCACACGGCTTCT...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCGGAGCCTGGCCGCAATaGCCTGGATCTCTTTCATCT +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCGAWPQ*PGSLSS
Trigger: AGATGAAAGAGATCCAGGCCATTGCGGCCAGGCTCC...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
3UTR CAA 72 bp AGACTCTACCACAGTGGAGGGCAGGAGGAGTTGGTGTaGGGGGCACATTGTCCATTCCAGCTGGAGGGTTTT +
Preference number: 4 (lower is better)
Translates to: RLYHSGGQEELV*GAHCPFQLEGF
Trigger: AAAACCCTCCAGCTGGAATGGACAATGTGCCCCCAACACCAACTCCTCCTGCCCTCCACTGTGGTAGAGTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR TCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCGAGGCTCGAAGAAGCTaGGTCCTTCCAATGAGCAAG +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCEARRS*VLPMSK
Trigger: CTTGCTCATTGGAAGGACTCAGCTTCTTCGAGCCTC...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR TCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCGACCCTCTGTTCCTCTaGAGTCACAGTCACAAGCTC +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCDPLFL*SHSHKL
Trigger: GAGCTTGTGACTGTGACTTCAGAGGAACAGAGGGTC...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR TCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCCCACATCCTGCTCTGTaGCAGAAGTGCCTTCCAGAA +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCPHPAL*QKCLPE
Trigger: TTCTGGAAGGCACTTCTGTCACAGAGCAGGATGTGG...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR TCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCCCTCTGCCTCCATCTTaGTGCTCAGGATTCGATTGC +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCPLPPS*CSGFDC
Trigger: GCAATCGAATCCTGAGCATCAAGATGGAGGCAGAGG...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR GCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCTTGTCTAGGTCCAGCTaGAGAGAGACAGGGCTCACA +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCLSRSS*RETGLT
Trigger: TGTGAGCCCTGTCTCTCTGCAGCTGGACCTAGACAA...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR GCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCGGGCCAGCTGTGTTATaGTGGCAGACACAGACATTG +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCGPAVL*WQTQTL
Trigger: CAATGTCTGTGTCTGCCAGCATAACACAGCTGGCCC...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR GCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCTGGCAGGTCTCTGAGTaGCCATTGCAGTCACACCTT +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCWQVSE*PLQSHL
Trigger: AAGGTGTGACTGCAATGGGCACTCAGAGACCTGCCA...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR GCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCCTTGCACGTACTCTTTaGACACACACTGGCCCGTCA +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCLARTL*THTGPS
Trigger: TGACGGGCCAGTGTGTGTGCAAAGAGTACGTGCAAG...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR GCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCCCCAAAGAGCTCCTCTaGCTCCATCTTGATGCTCAG +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCPKELL*LHLDAQ
Trigger: CTGAGCATCAAGATGGAGGCAGAGGAGCTCTTTGGG...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCCACAGCGGTCACAATTaGGGCCAGCTGTGTTATGCT +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCHSGHN*GQLCYA
Trigger: AGCATAACACAGCTGGCCCCAATTGTGACCGCTGTG...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCCACACTGGTCACATTTaGGGCCCACTACATTGGGCA +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCHTGHI*GPLHWA
Trigger: TGCCCAATGTAGTGGGCCCCAAATGTGACCAGTGTG...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCCACCAGCCTTTCAGCTaGTACAAGGACCTGCTGAAC +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCHQPFS*YKDLLN
Trigger: GTTCAGCAGGTCCTTGTACCAGCTGAAAGGCTGGTG...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCCTCTTAAAGCCCTCCTaGGCATTCATTGCCTGCTGG +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCLLKPS*AFIACW
Trigger: CCAGCAGGCAATGAATGCCCAGGAGGGCTTTAAGAG...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR TCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCTGCCACAAAGCTTGTTaGTGGTGGGTGTCAAGTCAG +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCCHKAC*WWVSSQ
Trigger: CTGACTTGACACCCACCATCAACAAGCTTTGTGGCA...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR GCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCGCCTGGAGTCACACTTaGAGCATTTCATCTGCCACT +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCAWSHT*SISSAT
Trigger: AGTGGCAGATGAAATGCTGCAAGTGTGACTCCAGGC...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR GCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCACACCCTCCATGTCTTaGCAAAGTCAGAAGAGCGCT +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCTPSMS*QSQKSA
Trigger: AGCGCTCTTCTGACTTTGGCAAGACATGGAGGGTGT...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR GCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCTCTCTGAGTGCCCATTaGAGTCACACCTTTGGCACT +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCSLSAH*SHTFGT
Trigger: AGTGCCAAAGGTGTGACTGCAATGGGCACTCAGAGA...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR GCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCATCATTTGCCTGGTCTaGTGGAGCTGGGTGTTGAAG +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCIICLV*WSWVLK
Trigger: CTTCAACACCCAGCTCCAGCAGACCAGGCAAATGAT...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR GCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCAAGCTCCTTCATCCGTaGCCAGAATCCACTCATCTG +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCKLLHP*PESTHL
Trigger: CAGATGAGTGGATTCTGGGCACGGATGAAGGAGCTT...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCCTCTGCAGGTCTCCATaGACGGTTGTTGTAGAAAGG +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCLCRSP*TVVVER
Trigger: CCTTTCTACAACAACCGTCCATGGAGACCTGCAGAG...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCCTGGACTGCTCCATCTaGATCACACTCACAGGGAAT +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCLDCSI*ITLTGN
Trigger: ATTCCCTGTGAGTGTGATCCAGATGGAGCAGTCCAG...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR TCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCCCCTCGAAGCAGCTCTaGCTCCATGTCTTTCATTTT +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCPSKQL*LHVFHF
Trigger: AAAATGAAAGACATGGAGTCAGAGCTGCTTCGAGGG...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCAATTTCGAGGCAGCCTaGAGTCACACTTGCAGCATT +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCNFEAA*SHTCSI
Trigger: AATGCTGCAAGTGTGACTCCAGGCTGCCTCGAAATT...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCCCAGCTGTGTTATGCTaGCAGACACAGACATTGTTG +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCPAVLC*QTQTLL
Trigger: CAACAATGTCTGTGTCTGCCAGCATAACACAGCTGG...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCATTTGCCTGGTCTGCTaGAGCTGGGTGTTGAAGTTT +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCICLVC*SWVLKF
Trigger: AAACTTCAACACCCAGCTCCAGCAGACCAGGCAAAT...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR TCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCCTTCCAGAATCTGTCTaGTCTGCTCAATCTTGCTCT +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCLPESV*SAQSCS
Trigger: AGAGCAAGATTGAGCAGATCAGACAGATTCTGGAAG...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR GCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCTCATCTGTTCCTTCATaGCTTTCACCAGCCTTTCAG +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCSSVPS*LSPAFQ
Trigger: CTGAAAGGCTGGTGAAAGGCATGAAGGAACAGATGA...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCTCCATAAGGTTAAGTTaGACCTTTCCCCCAGTCAGA +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCSIRLS*TFPPVR
Trigger: TCTGACTGGGGGAAAGGTCCAACTTAACCTTATGGA...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCATGTCTTGTTTGGTCTaGGATAGCACTGAGTCCACA +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCMSCLV*DSTEST
Trigger: TGTGGACTCAGTGCTATCCCAGACCAAACAAGACAT...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR GCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCAGAATCTGTCTGATCTaGTCAATCTTGCTCTTGGCA +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCRICLI*SILLLA
Trigger: TGCCAAGAGCAAGATTGAGCAGATCAGACAGATTCT...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR GCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCCTTAGCTTCTCAAATTaGTCCTTCTTGCTTCGGTAC +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCLSFSN*SFLLRY
Trigger: GTACCGAAGCAAGAAGGAGCAATTTGAGAAGCTAAG...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCAATCAACATGCCAGCTaGTGTGAGACCCTTAAAATC +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCNQHAS*CETLKI
Trigger: GATTTTAAGGGTCTCACACCAGCTGGCATGTTGATT...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR GCA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCAACTCTGTATACTTTTaGTTAAGTCTCTTAAAGCCC +
Preference number: 4 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCNSVYF*LSLLKP
Trigger: GGGCTTTAAGAGACTTAAGCAAAAGTATACAGAGTT...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CCA 90 bp CTCTGGGACAAGGGCCGGCACCGGACGTCCTGCCAGTTCTTGGGCTaGCCCTGGTGGACCTGGGGAAAGGTGCTGGCACAGTCTGTCGCC +
Preference number: 5 (lower is better)
Translates to: LWDKGRHRTSCQFLG*PWWTWGKVLAQSVA
Trigger: GGCGACAGACTGTGCCAGCACCTTTCCCCAGGTCCACCAGGGCCAGCCCAAGAACTGGCAGGACGTCCGGTGCCGGCCCTTGTCCCAGAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000192322.6
ENSMUST00000194677.6
CDS GCA 90 bp CATTGCCTGCTGGCTGGCACCCTCTGCAAGCTGCCGGGCCTGCATTaGCTGGGCCTGCTCCTCCTGGGCCTGACGGCGAAGCTCCTTCAT +
Preference number: 5 (lower is better)
Translates to: HCLLAGTLCKLPGLH*LGLLLLGLTAKLLH
Trigger: ATGAAGGAGCTTCGCCGTCAGGCCCAGGAGGAGCAGGCCCAGGCAATGCAGGCCCGGCAGCTTGCAGAGGGTGCCAGCCAGCAGGCAATG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CCA 90 bp AAGGGCCGGCACCGGACGTCCTGCCAGTTCTTGGGCTGGCCCTGGTaGACCTGGGGAAAGGTGCTGGCACAGTCTGTCGCCAGGTACTGG +
Preference number: 5 (lower is better)
Translates to: KGRHRTSCQFLGWPW*TWGKVLAQSVARYW
Trigger: CCAGTACCTGGCGACAGACTGTGCCAGCACCTTTCCCCAGGTCCACCAGGGCCAGCCCAAGAACTGGCAGGACGTCCGGTGCCGGCCCTT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000192322.6
ENSMUST00000194677.6
CDS CCA 90 bp GACAAGGGCCGGCACCGGACGTCCTGCCAGTTCTTGGGCTGGCCCTaGTGGACCTGGGGAAAGGTGCTGGCACAGTCTGTCGCCAGGTAC +
Preference number: 5 (lower is better)
Translates to: DKGRHRTSCQFLGWP*WTWGKVLAQSVARY
Trigger: GTACCTGGCGACAGACTGTGCCAGCACCTTTCCCCAGGTCCACCAGGGCCAGCCCAAGAACTGGCAGGACGTCCGGTGCCGGCCCTTGTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000192322.6
ENSMUST00000194677.6
CDS GCA 90 bp AGATGCCCATTAGGCCTCTGGGACAAGGGCCGGCACCGGACGTCCTaGCAGTTCTTGGGCTGGCCCTGGTGGACCTGGGGAAAGGTGCTG +
Preference number: 5 (lower is better)
Translates to: RCPLGLWDKGRHRTS*QFLGWPWWTWGKVL
Trigger: CAGCACCTTTCCCCAGGTCCACCAGGGCCAGCCCAAGAACTGGCAGGACGTCCGGTGCCGGCCCTTGTCCCAGAGGCCTAATGGGCATCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000192322.6
ENSMUST00000194677.6
CDS GCA 90 bp CTTAAAGCCCTCCTGGGCATTCATTGCCTGCTGGCTGGCACCCTCTaGAAGCTGCCGGGCCTGCATTGCCTGGGCCTGCTCCTCCTGGGC +
Preference number: 5 (lower is better)
Translates to: LKALLGIHCLLAGTL*KLPGLHCLGLLLLG
Trigger: GCCCAGGAGGAGCAGGCCCAGGCAATGCAGGCCCGGCAGCTTGCAGAGGGTGCCAGCCAGCAGGCAATGAATGCCCAGGAGGGCTTTAAG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CCA 90 bp CGGCACCGGACGTCCTGCCAGTTCTTGGGCTGGCCCTGGTGGACCTaGGGAAAGGTGCTGGCACAGTCTGTCGCCAGGTACTGGTACACC +
Preference number: 5 (lower is better)
Translates to: RHRTSCQFLGWPWWT*GKVLAQSVARYWYT
Trigger: GGTGTACCAGTACCTGGCGACAGACTGTGCCAGCACCTTTCCCCAGGTCCACCAGGGCCAGCCCAAGAACTGGCAGGACGTCCGGTGCCG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000192322.6
ENSMUST00000194677.6
CDS CCA 90 bp CCTTCCACAGCGTGGGCTCGGCTTCTGGCCTGCTCAGCCTCAGCCTaGAGCCTGCGGGCCCGTGCGATGTCTTGTTTGGTCTGGGATAGC +
Preference number: 5 (lower is better)
Translates to: PSTAWARLLACSASA*SLRARAMSCLVWDS
Trigger: GCTATCCCAGACCAAACAAGACATCGCACGGGCCCGCAGGCTCCAGGCTGAGGCTGAGCAGGCCAGAAGCCGAGCCCACGCTGTGGAAGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CCA 90 bp TGCCGAAGGTTCCCGACCACATCATCTACCTGCCCTTCCACAGCGTaGGCTCGGCTTCTGGCCTGCTCAGCCTCAGCCTGGAGCCTGCGG +
Preference number: 5 (lower is better)
Translates to: CRRFPTTSSTCPSTA*ARLLACSASAWSLR
Trigger: CCGCAGGCTCCAGGCTGAGGCTGAGCAGGCCAGAAGCCGAGCCCACGCTGTGGAAGGGCAGGTAGATGATGTGGTCGGGAACCTTCGGCA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS GCA 90 bp CAGCGTGGGCTCGGCTTCTGGCCTGCTCAGCCTCAGCCTGGAGCCTaGGGGCCCGTGCGATGTCTTGTTTGGTCTGGGATAGCACTGAGT +
Preference number: 5 (lower is better)
Translates to: QRGLGFWPAQPQPGA*GPVRCLVWSGIALS
Trigger: ACTCAGTGCTATCCCAGACCAAACAAGACATCGCACGGGCCCGCAGGCTCCAGGCTGAGGCTGAGCAGGCCAGAAGCCGAGCCCACGCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS GCA 90 bp AGAGCCACGGTGCCCTGCCGAAGGTTCCCGACCACATCATCTACCTaGCCTTCCACAGCGTGGGCTCGGCTTCTGGCCTGCTCAGCCTCA +
Preference number: 5 (lower is better)
Translates to: RATVPCRRFPTTSST*PSTAWARLLACSAS
Trigger: TGAGGCTGAGCAGGCCAGAAGCCGAGCCCACGCTGTGGAAGGGCAGGTAGATGATGTGGTCGGGAACCTTCGGCAGGGCACCGTGGCTCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS TCA 90 bp GTCACAGCGGGGCCCGGTAAAGCCAGGGCGGCAGAGGCAACGGCCTaGGGCTTTGTCACAGCCAGGACCCTCTGTTCCTCTGAAGTCACA +
Preference number: 5 (lower is better)
Translates to: VTAGPGKARAAEATA*GFVTARTLCSSEVT
Trigger: TGTGACTTCAGAGGAACAGAGGGTCCTGGCTGTGACAAAGCCTCAGGCCGTTGCCTCTGCCGCCCTGGCTTTACCGGGCCCCGCTGTGAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS TCA 90 bp TCCTGGATGAGCCGAAGAGAGCGGCCAGTACCCTGCATTGTGTCCTaGGCTTCCTGCAGAGCCACGGTGCCCTGCCGAAGGTTCCCGACC +
Preference number: 5 (lower is better)
Translates to: SWMSRRERPVPCIVS*ASCRATVPCRRFPT
Trigger: GGTCGGGAACCTTCGGCAGGGCACCGTGGCTCTGCAGGAAGCTCAGGACACAATGCAGGGTACTGGCCGCTCTCTTCGGCTCATCCAGGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CCA 90 bp GCTGCTCAGCTACCCGCCCTGCCATGTGGAAGGCCCCTTTGGCTCTaGGCAGGGCTCCCCTGCAGTGAGAGCCACAAGCTGTACCATTGT +
Preference number: 5 (lower is better)
Translates to: AAQLPALPCGRPLWL*AGLPCSESHKLYHC
Trigger: ACAATGGTACAGCTTGTGGCTCTCACTGCAGGGGAGCCCTGCCCAGAGCCAAAGGGGCCTTCCACATGGCAGGGCGGGTAGCTGAGCAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CCA 90 bp TCCTCCATCAGCAAGCGGCTGGTACTCACCTGGGTCTCAAGGCGCTaGGCATCGGCTTGGACCCTTGATGCTGCTTCCTCGGCTGCCCTG +
Preference number: 5 (lower is better)
Translates to: SSISKRLVLTWVSRR*ASAWTLDAASSAAL
Trigger: CAGGGCAGCCGAGGAAGCAGCATCAAGGGTCCAAGCCGATGCCCAGCGCCTTGAGACCCAGGTGAGTACCAGCCGCTTGCTGATGGAGGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS TCA 90 bp GGCCGCAATGGCCTGGATCTCTTTCATCTTGCGCAGCACTGTGGCTaGGTCTGTGGGCAGCCAGAGAGCCAGCACTGCCTCGCTGACCTG +
Preference number: 5 (lower is better)
Translates to: GRNGLDLFHLAQHCG*VCGQPESQHCLADL
Trigger: CAGGTCAGCGAGGCAGTGCTGGCTCTCTGGCTGCCCACAGACTCAGCCACAGTGCTGCGCAAGATGAAAGAGATCCAGGCCATTGCGGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS GCA 90 bp CGTCCTGCCAGTTCTTGGGCTGGCCCTGGTGGACCTGGGGAAAGGTaGTGGCACAGTCTGTCGCCAGGTACTGGTACACCCTCCATGTCT +
Preference number: 5 (lower is better)
Translates to: RPASSWAGPGGPGER*WHSLSPGTGTPSMS
Trigger: AGACATGGAGGGTGTACCAGTACCTGGCGACAGACTGTGCCAGCACCTTTCCCCAGGTCCACCAGGGCCAGCCCAAGAACTGGCAGGACG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000192322.6
ENSMUST00000194677.6
CDS CCA 90 bp GCCTGTCTCTCCAGGCCCTCTGCTTCCCTGCGACTGTCCCTCAACTaGCTCAGCAGGCTAGAACTGTCAGACACTTGCTGTGCAGCCCGG +
Preference number: 5 (lower is better)
Translates to: ACLSRPSASLRLSLN*LSRLELSDTCCAAR
Trigger: CCGGGCTGCACAGCAAGTGTCTGACAGTTCTAGCCTGCTGAGCCAGTTGAGGGACAGTCGCAGGGAAGCAGAGGGCCTGGAGAGACAGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CAA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCGCTGCCGGGCCTGCATaGCCTGGGCCTGCTCCTCCT +
Preference number: 5 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCAAGPA*PGPAPP
Trigger: AGGAGGAGCAGGCCCAGGCAATGCAGGCCCGGCAGC...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS GCA 90 bp TGGCTGGCAGCAAACACAGCTGGGTCGAAGTGGCAGGTCTCTGAGTaGCCATTGCAGTCACACCTTTGGCACTCGTGGGTGTCCTGGCCC +
Preference number: 5 (lower is better)
Translates to: WLAANTAGSKWQVSE*PLQSHLWHSWVSWP
Trigger: GGGCCAGGACACCCACGAGTGCCAAAGGTGTGACTGCAATGGGCACTCAGAGACCTGCCACTTCGACCCAGCTGTGTTTGCTGCCAGCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS GCA 90 bp AGCCAGGCTTGCAAAGGTCGCAGCGCTCTCCTTGCACGTACTCTTTaGACACACACTGGCCCGTCAGTCGGTCACAGGGAGCTCCCTGGA +
Preference number: 5 (lower is better)
Translates to: SQACKGRSALLARTL*THTGPSVGHRELPG
Trigger: TCCAGGGAGCTCCCTGTGACCGACTGACGGGCCAGTGTGTGTGCAAAGAGTACGTGCAAGGAGAGCGCTGCGACCTTTGCAAGCCTGGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS GCA 90 bp GTGAGCCCGGTGAAGCCAGGCTTGCAAAGGTCGCAGCGCTCTCCTTaGACGTACTCTTTGCACACACACTGGCCCGTCAGTCGGTCACAG +
Preference number: 5 (lower is better)
Translates to: VSPVKPGLQRSQRSP*TYSLHTHWPVSRSQ
Trigger: CTGTGACCGACTGACGGGCCAGTGTGTGTGCAAAGAGTACGTGCAAGGAGAGCGCTGCGACCTTTGCAAGCCTGGCTTCACCGGGCTCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS GCA 90 bp GGCCAGTACCCTGCATTGTGTCCTGAGCTTCCTGCAGAGCCACGGTaGCCTGCCGAAGGTTCCCGACCACATCATCTACCTGCCCTTCCA +
Preference number: 5 (lower is better)
Translates to: GQYPALCPELPAEPR*PAEGSRPHHLPALP
Trigger: TGGAAGGGCAGGTAGATGATGTGGTCGGGAACCTTCGGCAGGGCACCGTGGCTCTGCAGGAAGCTCAGGACACAATGCAGGGTACTGGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CCA 90 bp AGGTTAAGTTGGACCTTTCCCCCAGTCAGATGCCCATTAGGCCTCTaGGACAAGGGCCGGCACCGGACGTCCTGCCAGTTCTTGGGCTGG +
Preference number: 5 (lower is better)
Translates to: RLSWTFPPVRCPLGL*DKGRHRTSCQFLGW
Trigger: CCAGCCCAAGAACTGGCAGGACGTCCGGTGCCGGCCCTTGTCCCAGAGGCCTAATGGGCATCTGACTGGGGGAAAGGTCCAACTTAACCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000192322.6
ENSMUST00000194677.6
CDS CCA 90 bp AAGCGGCTGGTACTCACCTGGGTCTCAAGGCGCTGGGCATCGGCTTaGACCCTTGATGCTGCTTCCTCGGCTGCCCTGATCATTTGCCTG +
Preference number: 5 (lower is better)
Translates to: KRLVLTWVSRRWASA*TLDAASSAALIICL
Trigger: CAGGCAAATGATCAGGGCAGCCGAGGAAGCAGCATCAAGGGTCCAAGCCGATGCCCAGCGCCTTGAGACCCAGGTGAGTACCAGCCGCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CCA 90 bp GTGCGCTGGACATCTTCCTCCATCAGCAAGCGGCTGGTACTCACCTaGGTCTCAAGGCGCTGGGCATCGGCTTGGACCCTTGATGCTGCT +
Preference number: 5 (lower is better)
Translates to: VRWTSSSISKRLVLT*VSRRWASAWTLDAA
Trigger: AGCAGCATCAAGGGTCCAAGCCGATGCCCAGCGCCTTGAGACCCAGGTGAGTACCAGCCGCTTGCTGATGGAGGAAGATGTCCAGCGCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CCA 90 bp GAGTCTGTGGGCAGCCAGAGAGCCAGCACTGCCTCGCTGACCTGTTaGATGGTGGCTGCATCTGTGTCAGGATCTGTGAGAAAGCCCCGG +
Preference number: 5 (lower is better)
Translates to: ESVGSQRASTASLTC*MVAASVSGSVRKPR
Trigger: CCGGGGCTTTCTCACAGATCCTGACACAGATGCAGCCACCATCCAACAGGTCAGCGAGGCAGTGCTGGCTCTCTGGCTGCCCACAGACTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CAA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCCCCTCGGGAGCAGGCTaGCTGGGCACACAGGAAGCC +
Preference number: 5 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCPSGAG*LGTQEA
Trigger: GGCTTCCTGTGTGCCCAGCAAGCCTGCTCCCGAGGG...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS GCA 90 bp CCCATTGCAGTCACACCTTTGGCACTCGTGGGTGTCCTGGCCCTCTaGAGGTCTCCATGGACGGTTGTTGTAGAAAGGGGCACAGCGGTC +
Preference number: 5 (lower is better)
Translates to: PIAVTPLALVGVLAL*RSPWTVVVERGTAV
Trigger: GACCGCTGTGCCCCTTTCTACAACAACCGTCCATGGAGACCTGCAGAGGGCCAGGACACCCACGAGTGCCAAAGGTGTGACTGCAATGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS GCA 90 bp TGTGGCCACGTGTCCATAGGTCTGGTCAGGACACTGGCGGATGGCTaGAGAACTACACGTGAGGCCGCCAAACCCTTCCCGACAAGGACA +
Preference number: 5 (lower is better)
Translates to: CGHVSIGLVRTLADG*RTTREAAKPFPTRT
Trigger: TGTCCTTGTCGGGAAGGGTTTGGCGGCCTCACGTGTAGTTCTGCAGCCATCCGCCAGTGTCCTGACCAGACCTATGGACACGTGGCCACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS GCA 90 bp CTGGGCCTGCTCCTCCTGGGCCTGACGGCGAAGCTCCTTCATCCGTaGCCAGAATCCACTCATCTGTTCCTTCATGCCTTTCACCAGCCT +
Preference number: 5 (lower is better)
Translates to: LGLLLLGLTAKLLHP*PESTHLFLHAFHQP
Trigger: AGGCTGGTGAAAGGCATGAAGGAACAGATGAGTGGATTCTGGGCACGGATGAAGGAGCTTCGCCGTCAGGCCCAGGAGGAGCAGGCCCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CCA 90 bp GGCTCGAAGAAGCTGAGTCCTTCCAATGAGCAAGTCCCCCACAGGTaGATAACAGGCCCCTCGGGAGCAGGCTTGCTGGGCACACAGGAA +
Preference number: 5 (lower is better)
Translates to: GSKKLSPSNEQVPHR*ITGPSGAGLLGTQE
Trigger: TTCCTGTGTGCCCAGCAAGCCTGCTCCCGAGGGGCCTGTTATCCACCTGTGGGGGACTTGCTCATTGGAAGGACTCAGCTTCTTCGAGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000192322.6
ENSMUST00000194677.6
CDS CCA 90 bp ACACCTTTGGCACTCGTGGGTGTCCTGGCCCTCTGCAGGTCTCCATaGACGGTTGTTGTAGAAAGGGGCACAGCGGTCACAATTGGGGCC +
Preference number: 5 (lower is better)
Translates to: TPLALVGVLALCRSP*TVVVERGTAVTIGA
Trigger: GGCCCCAATTGTGACCGCTGTGCCCCTTTCTACAACAACCGTCCATGGAGACCTGCAGAGGGCCAGGACACCCACGAGTGCCAAAGGTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CCA 90 bp TCGGTGTGGTCCCGGCAGTTGTCACACACACCTCCATTTGTCCCCTaGCTGGCAGCAAACACAGCTGGGTCGAAGTGGCAGGTCTCTGAG +
Preference number: 5 (lower is better)
Translates to: SVWSRQLSHTPPFVP*LAANTAGSKWQVSE
Trigger: CTCAGAGACCTGCCACTTCGACCCAGCTGTGTTTGCTGCCAGCCAGGGGACAAATGGAGGTGTGTGTGACAACTGCCGGGACCACACCGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CCA 90 bp CAAAGGTCGCAGCGCTCTCCTTGCACGTACTCTTTGCACACACACTaGCCCGTCAGTCGGTCACAGGGAGCTCCCTGGACTGCTCCATCT +
Preference number: 5 (lower is better)
Translates to: QRSQRSPCTYSLHTH*PVSRSQGAPWTAPS
Trigger: AGATGGAGCAGTCCAGGGAGCTCCCTGTGACCGACTGACGGGCCAGTGTGTGTGCAAAGAGTACGTGCAAGGAGAGCGCTGCGACCTTTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CCA 90 bp GCTGCTTCCTCGGCTGCCCTGATCATTTGCCTGGTCTGCTGGAGCTaGGTGTTGAAGTTTCGTAGCTGCTCAGCTACCCGCCCTGCCATG +
Preference number: 5 (lower is better)
Translates to: AASSAALIICLVCWS*VLKFRSCSATRPAM
Trigger: CATGGCAGGGCGGGTAGCTGAGCAGCTACGAAACTTCAACACCCAGCTCCAGCAGACCAGGCAAATGATCAGGGCAGCCGAGGAAGCAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CAA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCACGTCCTGCCAGTTCTaGGGCTGGCCCTGGTGGACC +
Preference number: 5 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCTSCQF*GWPWWT
Trigger: GGTCCACCAGGGCCAGCCCAAGAACTGGCAGGACGT...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CAA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCGTGACCTCGTTGGCATaGGTCACAGCGGGGCCCGGT +
Preference number: 5 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCVTSLA*VTAGPG
Trigger: ACCGGGCCCCGCTGTGACCAATGCCAACGAGGTCAC...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CAA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCATGTGGAAGGCCCCTTaGGCTCTGGGCAGGGCTCCC +
Preference number: 5 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCMWKAP*ALGRAP
Trigger: GGGAGCCCTGCCCAGAGCCAAAGGGGCCTTCCACAT...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CCA 90 bp GTGAGGCCGCCAAACCCTTCCCGACAAGGACACTGTCCTGTAAACTaGTTGCACTGGGAGCTTAGGGAGTTGCGAGGGTCACAGGCACAG +
Preference number: 5 (lower is better)
Translates to: VRPPNPSRQGHCPVN*LHWELRELRGSQAQ
Trigger: CTGTGCCTGTGACCCTCGCAACTCCCTAAGCTCCCAGTGCAACCAGTTTACAGGACAGTGTCCTTGTCGGGAAGGGTTTGGCGGCCTCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CCA 90 bp TCTGTGAGAAAGCCCCGGACCTGTTGGATGAGAAGCCGTGTGCGCTaGACATCTTCCTCCATCAGCAAGCGGCTGGTACTCACCTGGGTC +
Preference number: 5 (lower is better)
Translates to: SVRKPRTCWMRSRVR*TSSSISKRLVLTWV
Trigger: GACCCAGGTGAGTACCAGCCGCTTGCTGATGGAGGAAGATGTCCAGCGCACACGGCTTCTCATCCAACAGGTCCGGGGCTTTCTCACAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CCA 90 bp TTTTGCTTAAGTCTCTTAAAGCCCTCCTGGGCATTCATTGCCTGCTaGCTGGCACCCTCTGCAAGCTGCCGGGCCTGCATTGCCTGGGCC +
Preference number: 5 (lower is better)
Translates to: FCLSLLKPSWAFIAC*LAPSASCRACIAWA
Trigger: GGCCCAGGCAATGCAGGCCCGGCAGCTTGCAGAGGGTGCCAGCCAGCAGGCAATGAATGCCCAGGAGGGCTTTAAGAGACTTAAGCAAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CAA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCCCTCCTGGGCATTCATaGCCTGCTGGCTGGCACCCT +
Preference number: 5 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCPPGHS*PAGWHP
Trigger: AGGGTGCCAGCCAGCAGGCAATGAATGCCCAGGAGG...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS GCA 90 bp GTCCCTCAACTGGCTCAGCAGGCTAGAACTGTCAGACACTTGCTGTaGAGCCCGGGAGGACTGCTCATAAGCCATGGTCAGCATGCGGAA +
Preference number: 5 (lower is better)
Translates to: VPQLAQQARTVRHLL*SPGGLLISHGQHAE
Trigger: TTCCGCATGCTGACCATGGCTTATGAGCAGTCCTCCCGGGCTGCACAGCAAGTGTCTGACAGTTCTAGCCTGCTGAGCCAGTTGAGGGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS GCA 90 bp ATCATTTGCCTGGTCTGCTGGAGCTGGGTGTTGAAGTTTCGTAGCTaGTCAGCTACCCGCCCTGCCATGTGGAAGGCCCCTTTGGCTCTG +
Preference number: 5 (lower is better)
Translates to: IICLVCWSWVLKFRS*SATRPAMWKAPLAL
Trigger: CAGAGCCAAAGGGGCCTTCCACATGGCAGGGCGGGTAGCTGAGCAGCTACGAAACTTCAACACCCAGCTCCAGCAGACCAGGCAAATGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS GCA 90 bp ACCCTTGATGCTGCTTCCTCGGCTGCCCTGATCATTTGCCTGGTCTaGTGGAGCTGGGTGTTGAAGTTTCGTAGCTGCTCAGCTACCCGC +
Preference number: 5 (lower is better)
Translates to: TLDAASSAALIICLV*WSWVLKFRSCSATR
Trigger: GCGGGTAGCTGAGCAGCTACGAAACTTCAACACCCAGCTCCAGCAGACCAGGCAAATGATCAGGGCAGCCGAGGAAGCAGCATCAAGGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CCA 90 bp CTGGCCCGTCAGTCGGTCACAGGGAGCTCCCTGGACTGCTCCATCTaGATCACACTCACAGGGAATACAAGTCTCATGAATGGGAGCGCT +
Preference number: 5 (lower is better)
Translates to: LARQSVTGSSLDCSI*ITLTGNTSLMNGSA
Trigger: AGCGCTCCCATTCATGAGACTTGTATTCCCTGTGAGTGTGATCCAGATGGAGCAGTCCAGGGAGCTCCCTGTGACCGACTGACGGGCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CCA 90 bp CTTGATGCTGCTTCCTCGGCTGCCCTGATCATTTGCCTGGTCTGCTaGAGCTGGGTGTTGAAGTTTCGTAGCTGCTCAGCTACCCGCCCT +
Preference number: 5 (lower is better)
Translates to: LDAASSAALIICLVC*SWVLKFRSCSATRP
Trigger: AGGGCGGGTAGCTGAGCAGCTACGAAACTTCAACACCCAGCTCCAGCAGACCAGGCAAATGATCAGGGCAGCCGAGGAAGCAGCATCAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CCA 90 bp TGGGATAGCACTGAGTCCACATTAGGGAGCCTGGCCGCAATGGCCTaGATCTCTTTCATCTTGCGCAGCACTGTGGCTGAGTCTGTGGGC +
Preference number: 5 (lower is better)
Translates to: WDSTESTLGSLAAMA*ISFILRSTVAESVG
Trigger: GCCCACAGACTCAGCCACAGTGCTGCGCAAGATGAAAGAGATCCAGGCCATTGCGGCCAGGCTCCCTAATGTGGACTCAGTGCTATCCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CAA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCTGGGAGCTTAGGGAGTaGCGAGGGTCACAGGCACAG +
Preference number: 5 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCWELRE*RGSQAQ
Trigger: CTGTGCCTGTGACCCTCGCAACTCCCTAAGCTCCCA...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CAA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCCAACGGCCTGAGGCTTaGTCACAGCCAGGACCCTCT +
Preference number: 5 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCQRPEA*SQPGPS
Trigger: AGAGGGTCCTGGCTGTGACAAAGCCTCAGGCCGTTG...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CAA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCGTCACAGTGACCTCGTaGGCATTGGTCACAGCGGGG +
Preference number: 5 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCVTVTS*ALVTAG
Trigger: CCCCGCTGTGACCAATGCCAACGAGGTCACTGTGAC...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CAA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCGGCTGCCCTGATCATTaGCCTGGTCTGCTGGAGCTG +
Preference number: 5 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCGCPDH*PGLLEL
Trigger: CAGCTCCAGCAGACCAGGCAAATGATCAGGGCAGCC...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CAA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCCATCGGCTTGGACCCTaGATGCTGCTTCCTCGGCTG +
Preference number: 5 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCHRLGP*MLLPRL
Trigger: CAGCCGAGGAAGCAGCATCAAGGGTCCAAGCCGATG...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CAA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCAAAGCCCCGGACCTGTaGGATGAGAAGCCGTGTGCG +
Preference number: 5 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCKAPDL*DEKPCA
Trigger: CGCACACGGCTTCTCATCCAACAGGTCCGGGGCTTT...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS TCA 90 bp CAGCTGGTACAAGGACCTGCTGAACCTCACCAACCCTTTCCTGGATaGGCCGAAGAGAGCGGCCAGTACCCTGCATTGTGTCCTGAGCTT +
Preference number: 5 (lower is better)
Translates to: QLVQGPAEPHQPFPG*AEESGQYPALCPEL
Trigger: AAGCTCAGGACACAATGCAGGGTACTGGCCGCTCTCTTCGGCTCATCCAGGAAAGGGTTGGTGAGGTTCAGCAGGTCCTTGTACCAGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS TCA 90 bp CGCTTCTCCAGCCCCGACAGGTCTGCAGAGCGCAGCATGATAGCCTaGCTCCCTCGAAGCAGCTCTGACTCCATGTCTTTCATTTTGTCC +
Preference number: 5 (lower is better)
Translates to: RFSSPDRSAERSMIA*LPRSSSDSMSFILS
Trigger: GGACAAAATGAAAGACATGGAGTCAGAGCTGCTTCGAGGGAGTCAGGCTATCATGCTGCGCTCTGCAGACCTGTCGGGGCTGGAGAAGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS GCA 90 bp TTGGGGCCAGCTGTGTTATGCTGGCAGACACAGACATTGTTGACCTaGACAGCAGTGGTAGAACCTCCAGGATTAGGGGCACAGCGGTCG +
Preference number: 5 (lower is better)
Translates to: LGPAVLCWQTQTLLT*TAVVEPPGLGAQRS
Trigger: CGACCGCTGTGCCCCTAATCCTGGAGGTTCTACCACTGCTGTGCAGGTCAACAATGTCTGTGTCTGCCAGCATAACACAGCTGGCCCCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS GCA 90 bp TCGGCTTGGACCCTTGATGCTGCTTCCTCGGCTGCCCTGATCATTTaGCTGGTCTGCTGGAGCTGGGTGTTGAAGTTTCGTAGCTGCTCA +
Preference number: 5 (lower is better)
Translates to: SAWTLDAASSAALII*LVCWSWVLKFRSCS
Trigger: TGAGCAGCTACGAAACTTCAACACCCAGCTCCAGCAGACCAGGCAAATGATCAGGGCAGCCGAGGAAGCAGCATCAAGGGTCCAAGCCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS GCA 90 bp TACTTTTGCTTAAGTCTCTTAAAGCCCTCCTGGGCATTCATTGCCTaGTGGCTGGCACCCTCTGCAAGCTGCCGGGCCTGCATTGCCTGG +
Preference number: 5 (lower is better)
Translates to: YFCLSLLKPSWAFIA*WLAPSASCRACIAW
Trigger: CCAGGCAATGCAGGCCCGGCAGCTTGCAGAGGGTGCCAGCCAGCAGGCAATGAATGCCCAGGAGGGCTTTAAGAGACTTAAGCAAAAGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CCA 90 bp GCAGAGAGACAGGGCTCACATCATTCTGTGACTGCCACCAGCGCATaGGGCCTGAAGACGATGCGACATTCTCCACTCGGTGACTGTTGT +
Preference number: 5 (lower is better)
Translates to: AERQGSHHSVTATSA*GLKTMRHSPLGDCC
Trigger: ACAACAGTCACCGAGTGGAGAATGTCGCATCGTCTTCAGGCCCCATGCGCTGGTGGCAGTCACAGAATGATGTGAGCCCTGTCTCTCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000192322.6
ENSMUST00000194677.6
CDS CCA 90 bp TGGTGGACCTGGGGAAAGGTGCTGGCACAGTCTGTCGCCAGGTACTaGTACACCCTCCATGTCTTGCCAAAGTCAGAAGAGCGCTCAATC +
Preference number: 5 (lower is better)
Translates to: WWTWGKVLAQSVARY*YTLHVLPKSEERSI
Trigger: GATTGAGCGCTCTTCTGACTTTGGCAAGACATGGAGGGTGTACCAGTACCTGGCGACAGACTGTGCCAGCACCTTTCCCCAGGTCCACCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000192322.6
ENSMUST00000194677.6
CDS CCA 90 bp TGTCAGACACTTGCTGTGCAGCCCGGGAGGACTGCTCATAAGCCATaGTCAGCATGCGGAAGGCTCCTGAAGGGTCTTCACTGCTTAGCT +
Preference number: 5 (lower is better)
Translates to: CQTLAVQPGRTAHKP*SACGRLLKGLHCLA
Trigger: AGCTAAGCAGTGAAGACCCTTCAGGAGCCTTCCGCATGCTGACCATGGCTTATGAGCAGTCCTCCCGGGCTGCACAGCAAGTGTCTGACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CCA 90 bp GTGGCTGCATCTGTGTCAGGATCTGTGAGAAAGCCCCGGACCTGTTaGATGAGAAGCCGTGTGCGCTGGACATCTTCCTCCATCAGCAAG +
Preference number: 5 (lower is better)
Translates to: VAASVSGSVRKPRTC*MRSRVRWTSSSISK
Trigger: CTTGCTGATGGAGGAAGATGTCCAGCGCACACGGCTTCTCATCCAACAGGTCCGGGGCTTTCTCACAGATCCTGACACAGATGCAGCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CAA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCGGCACAGGGGCCAGCTaGGTGAAGTTGACTCTCAAG +
Preference number: 5 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCGTGAS*VKLTLK
Trigger: CTTGAGAGTCAACTTCACCAAGCTGGCCCCTGTGCC...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CAA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCCACACACACCTCCATTaGTCCCCTGGCTGGCAGCAA +
Preference number: 5 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCHTHLH*SPGWQQ
Trigger: TTGCTGCCAGCCAGGGGACAAATGGAGGTGTGTGTG...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CAA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCCCTTGCACGTACTCTTaGCACACACACTGGCCCGTC +
Preference number: 5 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCPCTYS*HTHWPV
Trigger: GACGGGCCAGTGTGTGTGCAAAGAGTACGTGCAAGG...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CAA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCGTCGCAGCGCTCTCCTaGCACGTACTCTTTGCACAC +
Preference number: 5 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCVAALS*HVLFAH
Trigger: GTGTGCAAAGAGTACGTGCAAGGAGAGCGCTGCGAC...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CAA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCGCACACTGGTCACATTaGGGGCCCACTACATTGGGC +
Preference number: 5 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCAHWSH*GPTTLG
Trigger: GCCCAATGTAGTGGGCCCCAAATGTGACCAGTGTGC...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CAA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCTGCCTCGCTGACCTGTaGGATGGTGGCTGCATCTGT +
Preference number: 5 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCCLADL*DGGCIC
Trigger: ACAGATGCAGCCACCATCCAACAGGTCAGCGAGGCA...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CAA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCGGCCAGTACCCTGCATaGTGTCCTGAGCTTCCTGCA +
Preference number: 5 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCGQYPA*CPELPA
Trigger: TGCAGGAAGCTCAGGACACAATGCAGGGTACTGGCC...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS TCA 90 bp TCCTTCATGCCTTTCACCAGCCTTTCAGCTGGTACAAGGACCTGCTaGACCTCACCAACCCTTTCCTGGATGAGCCGAAGAGAGCGGCCA +
Preference number: 5 (lower is better)
Translates to: SFMPFTSLSAGTRTC*TSPTLSWMSRRERP
Trigger: TGGCCGCTCTCTTCGGCTCATCCAGGAAAGGGTTGGTGAGGTTCAGCAGGTCCTTGTACCAGCTGAAAGGCTGGTGAAAGGCATGAAGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS GCA 90 bp GTCGTCTATTCCGGAAATAGTGTAGCTGACAGCGCTCGCAGTTCTTaGCCTCGGTGTGGTCCCGGCAGTTGTCACACACACCTCCATTTG +
Preference number: 5 (lower is better)
Translates to: VVYSGNSVADSARSS*PRCGPGSCHTHLHL
Trigger: CAAATGGAGGTGTGTGTGACAACTGCCGGGACCACACCGAGGGCAAGAACTGCGAGCGCTGTCAGCTACACTATTTCCGGAATAGACGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CCA 90 bp TCTTTGCACACACACTGGCCCGTCAGTCGGTCACAGGGAGCTCCCTaGACTGCTCCATCTGGATCACACTCACAGGGAATACAAGTCTCA +
Preference number: 5 (lower is better)
Translates to: SLHTHWPVSRSQGAP*TAPSGSHSQGIQVS
Trigger: TGAGACTTGTATTCCCTGTGAGTGTGATCCAGATGGAGCAGTCCAGGGAGCTCCCTGTGACCGACTGACGGGCCAGTGTGTGTGCAAAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CCA 90 bp TGCTCAATCTTGCTCTTGGCATCTAGCAACCGAGAAGCCAGGCCATaGTCTTCCAGACCTGTCCCTGTCCACAGGCCTTCGGTGGCATTA +
Preference number: 5 (lower is better)
Translates to: CSILLLASSNREARP*SSRPVPVHRPSVAL
Trigger: TAATGCCACCGAAGGCCTGTGGACAGGGACAGGTCTGGAAGACCATGGCCTGGCTTCTCGGTTGCTAGATGCCAAGAGCAAGATTGAGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CAA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCGTCTCTGAGTGCCCATaGCAGTCACACCTTTGGCAC +
Preference number: 5 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCVSECP*QSHLWH
Trigger: GTGCCAAAGGTGTGACTGCAATGGGCACTCAGAGAC...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CAA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCGTGTGGTCCCGGCAGTaGTCACACACACCTCCATTT +
Preference number: 5 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCVWSRQ*SHTPPF
Trigger: AAATGGAGGTGTGTGTGACAACTGCCGGGACCACAC...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS GCA 90 bp CTTGCTGTGCAGCCCGGGAGGACTGCTCATAAGCCATGGTCAGCATaGGGAAGGCTCCTGAAGGGTCTTCACTGCTTAGCTTCTCAAATT +
Preference number: 5 (lower is better)
Translates to: LAVQPGRTAHKPWSA*GRLLKGLHCLASQI
Trigger: AATTTGAGAAGCTAAGCAGTGAAGACCCTTCAGGAGCCTTCCGCATGCTGACCATGGCTTATGAGCAGTCCTCCCGGGCTGCACAGCAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CAA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCAGCCTGGAGTCACACTaGCAGCATTTCATCTGCCAC +
Preference number: 5 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCSLESH*QHFICH
Trigger: GTGGCAGATGAAATGCTGCAAGTGTGACTCCAGGCT...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CAA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCTGGCAGACACAGACATaGTTGACCTGCACAGCAGTG +
Preference number: 5 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCWQTQT*LTCTAV
Trigger: CACTGCTGTGCAGGTCAACAATGTCTGTGTCTGCCA...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CAA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCTGTCCTGTAAACTGGTaGCACTGGGAGCTTAGGGAG +
Preference number: 5 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCCPVNW*HWELRE
Trigger: CTCCCTAAGCTCCCAGTGCAACCAGTTTACAGGACA...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CAA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCTGCTGGAGCTGGGTGTaGAAGTTTCGTAGCTGCTCA +
Preference number: 5 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCCWSWV*KFRSCS
Trigger: TGAGCAGCTACGAAACTTCAACACCCAGCTCCAGCA...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CAA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCTGGATCTCTTTCATCTaGCGCAGCACTGTGGCTGAG +
Preference number: 5 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCWISFI*RSTVAE
Trigger: CTCAGCCACAGTGCTGCGCAAGATGAAAGAGATCCA...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CAA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCCTGCCACAAAGCTTGTaGATGGTGGGTGTCAAGTCA +
Preference number: 5 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCLPQSL*MVGVKS
Trigger: TGACTTGACACCCACCATCAACAAGCTTTGTGGCAG...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CAA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCTCCTCTGCCTCCATCTaGATGCTCAGGATTCGATTG +
Preference number: 5 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCSSASI*MLRIRL
Trigger: CAATCGAATCCTGAGCATCAAGATGGAGGCAGAGGA...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CCA 90 bp CTGGATCACACTCACAGGGAATACAAGTCTCATGAATGGGAGCGCTaGGTCGTCTATTCCGGAAATAGTGTAGCTGACAGCGCTCGCAGT +
Preference number: 5 (lower is better)
Translates to: LDHTHREYKSHEWER*VVYSGNSVADSARS
Trigger: ACTGCGAGCGCTGTCAGCTACACTATTTCCGGAATAGACGACCCAGCGCTCCCATTCATGAGACTTGTATTCCCTGTGAGTGTGATCCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CCA 90 bp TCCTTCAACTCTGTATACTTTTGCTTAAGTCTCTTAAAGCCCTCCTaGGCATTCATTGCCTGCTGGCTGGCACCCTCTGCAAGCTGCCGG +
Preference number: 5 (lower is better)
Translates to: SFNSVYFCLSLLKPS*AFIACWLAPSASCR
Trigger: CCGGCAGCTTGCAGAGGGTGCCAGCCAGCAGGCAATGAATGCCCAGGAGGGCTTTAAGAGACTTAAGCAAAAGTATACAGAGTTGAAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CAA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCATCCATAAGGTTAAGTaGGACCTTTCCCCCAGTCAG +
Preference number: 5 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCIHKVK*DLSPSQ
Trigger: CTGACTGGGGGAAAGGTCCAACTTAACCTTATGGAT...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CAA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCGCCAGCTTGGTGAAGTaGACTCTCAAGTTTGTGATG +
Preference number: 5 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCASLVK*TLKFVM
Trigger: CATCACAAACTTGAGAGTCAACTTCACCAAGCTGGC...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CAA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCTGCTCAATCTTGCTCTaGGCATCTAGCAACCGAGAA +
Preference number: 5 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCCSILL*ASSNRE
Trigger: TTCTCGGTTGCTAGATGCCAAGAGCAAGATTGAGCA...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS TCA 90 bp AACATGCCAGCTGGTGTGAGACCCTTAAAATCCATCATGATGTCCTaGAGCTGCATCCTCTTGTCTAGGTCCAGCTGCAGAGAGACAGGG +
Preference number: 5 (lower is better)
Translates to: NMPAGVRPLKSIMMS*SCILLSRSSCRETG
Trigger: CCCTGTCTCTCTGCAGCTGGACCTAGACAAGAGGATGCAGCTTCAGGACATCATGATGGATTTTAAGGGTCTCACACCAGCTGGCATGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000192322.6
ENSMUST00000194677.6
CDS TCA 90 bp TTGATGCTCAGGATTCGATTGCCTTGCTCGCCCAGCACAGGACTCTaGCCCAGCCGGTCCTTCAACTCTGTATACTTTTGCTTAAGTCTC +
Preference number: 5 (lower is better)
Translates to: LMLRIRLPCSPSTGL*PSRSFNSVYFCLSL
Trigger: GAGACTTAAGCAAAAGTATACAGAGTTGAAGGACCGGCTGGGTCAGAGTCCTGTGCTGGGCGAGCAAGGCAATCGAATCCTGAGCATCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS GCA 90 bp ACATCCTGCTCTGTGACAGAAGTGCCTTCCAGAATCTGTCTGATCTaGTCAATCTTGCTCTTGGCATCTAGCAACCGAGAAGCCAGGCCA +
Preference number: 5 (lower is better)
Translates to: TSCSVTEVPSRICLI*SILLLASSNREARP
Trigger: TGGCCTGGCTTCTCGGTTGCTAGATGCCAAGAGCAAGATTGAGCAGATCAGACAGATTCTGGAAGGCACTTCTGTCACAGAGCAGGATGT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS TCA 90 bp ATATTGGGTGCAATAGGTCTCAGGTTTGGTCAATCCACAGGTAGATaGGGCTCGAAGAAGCTGAGTCCTTCCAATGAGCAAGTCCCCCAC +
Preference number: 5 (lower is better)
Translates to: ILGAIGLRFGQSTGR*GSKKLSPSNEQVPH
Trigger: GTGGGGGACTTGCTCATTGGAAGGACTCAGCTTCTTCGAGCCTCATCTACCTGTGGATTGACCAAACCTGAGACCTATTGCACCCAATAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000192322.6
ENSMUST00000194677.6
CDS GCA 90 bp CCACTCGGTGACTGTTGTAATTTCGAGGCAGCCTGGAGTCACACTTaGAGCATTTCATCTGCCACTGTCCATATTGGGTGCAATAGGTCT +
Preference number: 5 (lower is better)
Translates to: PLGDCCNFEAAWSHT*SISSATVHIGCNRS
Trigger: AGACCTATTGCACCCAATATGGACAGTGGCAGATGAAATGCTGCAAGTGTGACTCCAGGCTGCCTCGAAATTACAACAGTCACCGAGTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000192322.6
ENSMUST00000194677.6
CDS-3UTR CAA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCTCCATGTCTTTCATTTaGTCCATCATTTCCATGGTC +
Preference number: 5 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCSMSFI*SIISMV
Trigger: GACCATGGAAATGATGGACAAAATGAAAGACATGGA...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CCA 90 bp CCATGTCTTGCCAAAGTCAGAAGAGCGCTCAATCAACATGCCAGCTaGTGTGAGACCCTTAAAATCCATCATGATGTCCTGAAGCTGCAT +
Preference number: 5 (lower is better)
Translates to: PCLAKVRRALNQHAS*CETLKIHHDVLKLH
Trigger: ATGCAGCTTCAGGACATCATGATGGATTTTAAGGGTCTCACACCAGCTGGCATGTTGATTGAGCGCTCTTCTGACTTTGGCAAGACATGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000192322.6
ENSMUST00000194677.6
CDS-3UTR CAA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCGATGTCCCCAAGTTCTaGAATCTTTTTACTTTGAGA +
Preference number: 5 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCDVPKF*NLFTLR
Trigger: TCTCAAAGTAAAAAGATTCAAGAACTTGGGGACATC...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS-3UTR CAA 90 bp CAGGGTGACCAGTCTATGCTATCAATGGTGGAGACATTCCCCTCCCCAGTGTGCCAACTCTGTATACTTTaGCTTAAGTCTCTTAAAGCC +
Preference number: 5 (lower is better)
Translates to: QGDQSMLSMVETFPSPVCQLCIL*LKSLKA
Trigger: GGCTTTAAGAGACTTAAGCAAAAGTATACAGAGTTG...GCACACTGGGGAGGGGAATGTCTCCACCATTGATAGCATAGACTGGTCACCCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS GCA 72 bp CTGGCTGGCACCCTCTGCAAGCTGCCGGGCCTGCATTaGCTGGGCCTGCTCCTCCTGGGCCTGACGGCGAAG +
Preference number: 6 (lower is better)
Translates to: LAGTLCKLPGLH*LGLLLLGLTAK
Trigger: CTTCGCCGTCAGGCCCAGGAGGAGCAGGCCCAGGCAATGCAGGCCCGGCAGCTTGCAGAGGGTGCCAGCCAG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS GCA 72 bp TTAGGCCTCTGGGACAAGGGCCGGCACCGGACGTCCTaGCAGTTCTTGGGCTGGCCCTGGTGGACCTGGGGA +
Preference number: 6 (lower is better)
Translates to: LGLWDKGRHRTS*QFLGWPWWTWG
Trigger: TCCCCAGGTCCACCAGGGCCAGCCCAAGAACTGGCAGGACGTCCGGTGCCGGCCCTTGTCCCAGAGGCCTAA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000192322.6
ENSMUST00000194677.6
CDS CCA 72 bp AAGGGCCGGCACCGGACGTCCTGCCAGTTCTTGGGCTaGCCCTGGTGGACCTGGGGAAAGGTGCTGGCACAG +
Preference number: 6 (lower is better)
Translates to: KGRHRTSCQFLG*PWWTWGKVLAQ
Trigger: CTGTGCCAGCACCTTTCCCCAGGTCCACCAGGGCCAGCCCAAGAACTGGCAGGACGTCCGGTGCCGGCCCTT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000192322.6
ENSMUST00000194677.6
CDS CCA 72 bp GCGTGGGCTCGGCTTCTGGCCTGCTCAGCCTCAGCCTaGAGCCTGCGGGCCCGTGCGATGTCTTGTTTGGTC +
Preference number: 6 (lower is better)
Translates to: AWARLLACSASA*SLRARAMSCLV
Trigger: GACCAAACAAGACATCGCACGGGCCCGCAGGCTCCAGGCTGAGGCTGAGCAGGCCAGAAGCCGAGCCCACGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS GCA 72 bp CTCCTGGGCATTCATTGCCTGCTGGCTGGCACCCTCTaGAAGCTGCCGGGCCTGCATTGCCTGGGCCTGCTC +
Preference number: 6 (lower is better)
Translates to: LLGIHCLLAGTL*KLPGLHCLGLL
Trigger: GAGCAGGCCCAGGCAATGCAGGCCCGGCAGCTTGCAGAGGGTGCCAGCCAGCAGGCAATGAATGCCCAGGAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CAA 90 bp TTAGGCCTCTGGGACAAGGGCCGGCACCGGACGTCCTGCCAGTTCTaGGGCTGGCCCTGGTGGACCTGGGGAAAGGTGCTGGCACAGTCT +
Preference number: 6 (lower is better)
Translates to: LGLWDKGRHRTSCQF*GWPWWTWGKVLAQS
Trigger: AGACTGTGCCAGCACCTTTCCCCAGGTCCACCAGGGCCAGCCCAAGAACTGGCAGGACGTCCGGTGCCGGCCCTTGTCCCAGAGGCCTAA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000192322.6
ENSMUST00000194677.6
CDS TCA 72 bp GGGCCCGGTAAAGCCAGGGCGGCAGAGGCAACGGCCTaGGGCTTTGTCACAGCCAGGACCCTCTGTTCCTCT +
Preference number: 6 (lower is better)
Translates to: GPGKARAAEATA*GFVTARTLCSS
Trigger: AGAGGAACAGAGGGTCCTGGCTGTGACAAAGCCTCAGGCCGTTGCCTCTGCCGCCCTGGCTTTACCGGGCCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS GCA 72 bp GTGCCCTGCCGAAGGTTCCCGACCACATCATCTACCTaGCCTTCCACAGCGTGGGCTCGGCTTCTGGCCTGC +
Preference number: 6 (lower is better)
Translates to: VPCRRFPTTSST*PSTAWARLLAC
Trigger: GCAGGCCAGAAGCCGAGCCCACGCTGTGGAAGGGCAGGTAGATGATGTGGTCGGGAACCTTCGGCAGGGCAC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CAA 90 bp GCAGGCCACACATACTGGGTAGCGGTCACAGTGACCTCGTTGGCATaGGTCACAGCGGGGCCCGGTAAAGCCAGGGCGGCAGAGGCAACG +
Preference number: 6 (lower is better)
Translates to: AGHTYWVAVTVTSLA*VTAGPGKARAAEAT
Trigger: CGTTGCCTCTGCCGCCCTGGCTTTACCGGGCCCCGCTGTGACCAATGCCAACGAGGTCACTGTGACCGCTACCCAGTATGTGTGGCCTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CAA 90 bp GGAGTGGCAGGCCACACATACTGGGTAGCGGTCACAGTGACCTCGTaGGCATTGGTCACAGCGGGGCCCGGTAAAGCCAGGGCGGCAGAG +
Preference number: 6 (lower is better)
Translates to: GVAGHTYWVAVTVTS*ALVTAGPGKARAAE
Trigger: CTCTGCCGCCCTGGCTTTACCGGGCCCCGCTGTGACCAATGCCAACGAGGTCACTGTGACCGCTACCCAGTATGTGTGGCCTGCCACTCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CCA 72 bp TGGACCTTTCCCCCAGTCAGATGCCCATTAGGCCTCTaGGACAAGGGCCGGCACCGGACGTCCTGCCAGTTC +
Preference number: 6 (lower is better)
Translates to: WTFPPVRCPLGL*DKGRHRTSCQF
Trigger: GAACTGGCAGGACGTCCGGTGCCGGCCCTTGTCCCAGAGGCCTAATGGGCATCTGACTGGGGGAAAGGTCCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000192322.6
ENSMUST00000194677.6
CDS CAA 90 bp CGGGGCCCGGTAAAGCCAGGGCGGCAGAGGCAACGGCCTGAGGCTTaGTCACAGCCAGGACCCTCTGTTCCTCTGAAGTCACAGTCACAA +
Preference number: 6 (lower is better)
Translates to: RGPVKPGRQRQRPEA*SQPGPSVPLKSQSQ
Trigger: TTGTGACTGTGACTTCAGAGGAACAGAGGGTCCTGGCTGTGACAAAGCCTCAGGCCGTTGCCTCTGCCGCCCTGGCTTTACCGGGCCCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS GCA 72 bp AGTTCTTGGGCTGGCCCTGGTGGACCTGGGGAAAGGTaGTGGCACAGTCTGTCGCCAGGTACTGGTACACCC +
Preference number: 6 (lower is better)
Translates to: SSWAGPGGPGER*WHSLSPGTGTP
Trigger: GGGTGTACCAGTACCTGGCGACAGACTGTGCCAGCACCTTTCCCCAGGTCCACCAGGGCCAGCCCAAGAACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000192322.6
ENSMUST00000194677.6
CDS CCA 72 bp AGCAAGCGGCTGGTACTCACCTGGGTCTCAAGGCGCTaGGCATCGGCTTGGACCCTTGATGCTGCTTCCTCG +
Preference number: 6 (lower is better)
Translates to: SKRLVLTWVSRR*ASAWTLDAASS
Trigger: CGAGGAAGCAGCATCAAGGGTCCAAGCCGATGCCCAGCGCCTTGAGACCCAGGTGAGTACCAGCCGCTTGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CCA 72 bp GTGTGCGCTGGACATCTTCCTCCATCAGCAAGCGGCTaGTACTCACCTGGGTCTCAAGGCGCTGGGCATCGG +
Preference number: 6 (lower is better)
Translates to: VCAGHLPPSASG*YSPGSQGAGHR
Trigger: CCGATGCCCAGCGCCTTGAGACCCAGGTGAGTACCAGCCGCTTGCTGATGGAGGAAGATGTCCAGCGCACAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CAA 72 bp ACATACTGGGTAGCGGTCACAGTGACCTCGTTGGCATaGGTCACAGCGGGGCCCGGTAAAGCCAGGGCGGCA +
Preference number: 6 (lower is better)
Translates to: TYWVAVTVTSLA*VTAGPGKARAA
Trigger: TGCCGCCCTGGCTTTACCGGGCCCCGCTGTGACCAATGCCAACGAGGTCACTGTGACCGCTACCCAGTATGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CAA 72 bp GGCCACACATACTGGGTAGCGGTCACAGTGACCTCGTaGGCATTGGTCACAGCGGGGCCCGGTAAAGCCAGG +
Preference number: 6 (lower is better)
Translates to: GHTYWVAVTVTS*ALVTAGPGKAR
Trigger: CCTGGCTTTACCGGGCCCCGCTGTGACCAATGCCAACGAGGTCACTGTGACCGCTACCCAGTATGTGTGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CAA 72 bp GGGAGCCTGGCCGCAATGGCCTGGATCTCTTTCATCTaGCGCAGCACTGTGGCTGAGTCTGTGGGCAGCCAG +
Preference number: 6 (lower is better)
Translates to: GSLAAMAWISFI*RSTVAESVGSQ
Trigger: CTGGCTGCCCACAGACTCAGCCACAGTGCTGCGCAAGATGAAAGAGATCCAGGCCATTGCGGCCAGGCTCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CAA 90 bp TCTTGCCCTCGGTGTGGTCCCGGCAGTTGTCACACACACCTCCATTaGTCCCCTGGCTGGCAGCAAACACAGCTGGGTCGAAGTGGCAGG +
Preference number: 6 (lower is better)
Translates to: SCPRCGPGSCHTHLH*SPGWQQTQLGRSGR
Trigger: CCTGCCACTTCGACCCAGCTGTGTTTGCTGCCAGCCAGGGGACAAATGGAGGTGTGTGTGACAACTGCCGGGACCACACCGAGGGCAAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CAA 90 bp AAGCCAGGCTTGCAAAGGTCGCAGCGCTCTCCTTGCACGTACTCTTaGCACACACACTGGCCCGTCAGTCGGTCACAGGGAGCTCCCTGG +
Preference number: 6 (lower is better)
Translates to: KPGLQRSQRSPCTYS*HTHWPVSRSQGAPW
Trigger: CCAGGGAGCTCCCTGTGACCGACTGACGGGCCAGTGTGTGTGCAAAGAGTACGTGCAAGGAGAGCGCTGCGACCTTTGCAAGCCTGGCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CAA 90 bp GGTGAGCCCGGTGAAGCCAGGCTTGCAAAGGTCGCAGCGCTCTCCTaGCACGTACTCTTTGCACACACACTGGCCCGTCAGTCGGTCACA +
Preference number: 6 (lower is better)
Translates to: GEPGEARLAKVAALS*HVLFAHTLARQSVT
Trigger: TGTGACCGACTGACGGGCCAGTGTGTGTGCAAAGAGTACGTGCAAGGAGAGCGCTGCGACCTTTGCAAGCCTGGCTTCACCGGGCTCACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CAA 90 bp TGGCAGCCCTTCGGGTTGGCGAAGGTGAGCCCGGTGAAGCCAGGCTaGCAAAGGTCGCAGCGCTCTCCTTGCACGTACTCTTTGCACACA +
Preference number: 6 (lower is better)
Translates to: WQPFGLAKVSPVKPG*QRSQRSPCTYSLHT
Trigger: TGTGTGCAAAGAGTACGTGCAAGGAGAGCGCTGCGACCTTTGCAAGCCTGGCTTCACCGGGCTCACCTTCGCCAACCCGAAGGGCTGCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS TCA 72 bp GGTCAGGACACTGGCGGATGGCTGCAGAACTACACGTaGGGCCGCCAAACCCTTCCCGACAAGGACACTGTC +
Preference number: 6 (lower is better)
Translates to: GQDTGGWLQNYT*GRQTLPDKDTV
Trigger: GACAGTGTCCTTGTCGGGAAGGGTTTGGCGGCCTCACGTGTAGTTCTGCAGCCATCCGCCAGTGTCCTGACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS TCA 72 bp GGCCTGGATCTCTTTCATCTTGCGCAGCACTGTGGCTaGGTCTGTGGGCAGCCAGAGAGCCAGCACTGCCTC +
Preference number: 6 (lower is better)
Translates to: GLDLFHLAQHCG*VCGQPESQHCL
Trigger: GAGGCAGTGCTGGCTCTCTGGCTGCCCACAGACTCAGCCACAGTGCTGCGCAAGATGAAAGAGATCCAGGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS GCA 72 bp GTGTCCATAGGTCTGGTCAGGACACTGGCGGATGGCTaGAGAACTACACGTGAGGCCGCCAAACCCTTCCCG +
Preference number: 6 (lower is better)
Translates to: VSIGLVRTLADG*RTTREAAKPFP
Trigger: CGGGAAGGGTTTGGCGGCCTCACGTGTAGTTCTGCAGCCATCCGCCAGTGTCCTGACCAGACCTATGGACAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS GCA 72 bp CTGGTCTGCTGGAGCTGGGTGTTGAAGTTTCGTAGCTaGTCAGCTACCCGCCCTGCCATGTGGAAGGCCCCT +
Preference number: 6 (lower is better)
Translates to: LVCWSWVLKFRS*SATRPAMWKAP
Trigger: AGGGGCCTTCCACATGGCAGGGCGGGTAGCTGAGCAGCTACGAAACTTCAACACCCAGCTCCAGCAGACCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS GCA 72 bp GATCTGCTCCACACGCTTCTCCAGCCCCGACAGGTCTaGAGAGCGCAGCATGATAGCCTGACTCCCTCGAAG +
Preference number: 6 (lower is better)
Translates to: DLLHTLLQPRQV*RAQHDSLTPSK
Trigger: CTTCGAGGGAGTCAGGCTATCATGCTGCGCTCTGCAGACCTGTCGGGGCTGGAGAAGCGTGTGGAGCAGATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CCA 72 bp AAGCTGAGTCCTTCCAATGAGCAAGTCCCCCACAGGTaGATAACAGGCCCCTCGGGAGCAGGCTTGCTGGGC +
Preference number: 6 (lower is better)
Translates to: KLSPSNEQVPHR*ITGPSGAGLLG
Trigger: GCCCAGCAAGCCTGCTCCCGAGGGGCCTGTTATCCACCTGTGGGGGACTTGCTCATTGGAAGGACTCAGCTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000192322.6
ENSMUST00000194677.6
CDS CCA 72 bp TCTGAGTGCCCATTGCAGTCACACCTTTGGCACTCGTaGGTGTCCTGGCCCTCTGCAGGTCTCCATGGACGG +
Preference number: 6 (lower is better)
Translates to: SECPLQSHLWHS*VSWPSAGLHGR
Trigger: CCGTCCATGGAGACCTGCAGAGGGCCAGGACACCCACGAGTGCCAAAGGTGTGACTGCAATGGGCACTCAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CCA 72 bp CAGCGCTCTCCTTGCACGTACTCTTTGCACACACACTaGCCCGTCAGTCGGTCACAGGGAGCTCCCTGGACT +
Preference number: 6 (lower is better)
Translates to: QRSPCTYSLHTH*PVSRSQGAPWT
Trigger: AGTCCAGGGAGCTCCCTGTGACCGACTGACGGGCCAGTGTGTGTGCAAAGAGTACGTGCAAGGAGAGCGCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CCA 72 bp TGGAGCCTGCGGGCCCGTGCGATGTCTTGTTTGGTCTaGGATAGCACTGAGTCCACATTAGGGAGCCTGGCC +
Preference number: 6 (lower is better)
Translates to: WSLRARAMSCLV*DSTESTLGSLA
Trigger: GGCCAGGCTCCCTAATGTGGACTCAGTGCTATCCCAGACCAAACAAGACATCGCACGGGCCCGCAGGCTCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CAA 72 bp TTCGGGTTGGCGAAGGTGAGCCCGGTGAAGCCAGGCTaGCAAAGGTCGCAGCGCTCTCCTTGCACGTACTCT +
Preference number: 6 (lower is better)
Translates to: FGLAKVSPVKPG*QRSQRSPCTYS
Trigger: AGAGTACGTGCAAGGAGAGCGCTGCGACCTTTGCAAGCCTGGCTTCACCGGGCTCACCTTCGCCAACCCGAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CAA 72 bp TGTCCTGTAAACTGGTTGCACTGGGAGCTTAGGGAGTaGCGAGGGTCACAGGCACAGGGCTCGCAGCCCAGG +
Preference number: 6 (lower is better)
Translates to: CPVNWLHWELRE*RGSQAQGSQPR
Trigger: CCTGGGCTGCGAGCCCTGTGCCTGTGACCCTCGCAACTCCCTAAGCTCCCAGTGCAACCAGTTTACAGGACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CAA 72 bp GGGCAGCCAGAGAGCCAGCACTGCCTCGCTGACCTGTaGGATGGTGGCTGCATCTGTGTCAGGATCTGTGAG +
Preference number: 6 (lower is better)
Translates to: GQPESQHCLADL*DGGCICVRICE
Trigger: CTCACAGATCCTGACACAGATGCAGCCACCATCCAACAGGTCAGCGAGGCAGTGCTGGCTCTCTGGCTGCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CAA 90 bp AGGCCGCCAAACCCTTCCCGACAAGGACACTGTCCTGTAAACTGGTaGCACTGGGAGCTTAGGGAGTTGCGAGGGTCACAGGCACAGGGC +
Preference number: 6 (lower is better)
Translates to: RPPNPSRQGHCPVNW*HWELRELRGSQAQG
Trigger: GCCCTGTGCCTGTGACCCTCGCAACTCCCTAAGCTCCCAGTGCAACCAGTTTACAGGACAGTGTCCTTGTCGGGAAGGGTTTGGCGGCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS GCA 72 bp GTCACACCTTTGGCACTCGTGGGTGTCCTGGCCCTCTaGAGGTCTCCATGGACGGTTGTTGTAGAAAGGGGC +
Preference number: 6 (lower is better)
Translates to: VTPLALVGVLAL*RSPWTVVVERG
Trigger: GCCCCTTTCTACAACAACCGTCCATGGAGACCTGCAGAGGGCCAGGACACCCACGAGTGCCAAAGGTGTGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS GCA 72 bp TGCAAAGGTCGCAGCGCTCTCCTTGCACGTACTCTTTaGACACACACTGGCCCGTCAGTCGGTCACAGGGAG +
Preference number: 6 (lower is better)
Translates to: CKGRSALLARTL*THTGPSVGHRE
Trigger: CTCCCTGTGACCGACTGACGGGCCAGTGTGTGTGCAAAGAGTACGTGCAAGGAGAGCGCTGCGACCTTTGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS GCA 72 bp CCTGCATTGTGTCCTGAGCTTCCTGCAGAGCCACGGTaGCCTGCCGAAGGTTCCCGACCACATCATCTACCT +
Preference number: 6 (lower is better)
Translates to: PALCPELPAEPR*PAEGSRPHHLP
Trigger: AGGTAGATGATGTGGTCGGGAACCTTCGGCAGGGCACCGTGGCTCTGCAGGAAGCTCAGGACACAATGCAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS GCA 72 bp TTAAGTCTCTTAAAGCCCTCCTGGGCATTCATTGCCTaGTGGCTGGCACCCTCTGCAAGCTGCCGGGCCTGC +
Preference number: 6 (lower is better)
Translates to: LSLLKPSWAFIA*WLAPSASCRAC
Trigger: GCAGGCCCGGCAGCTTGCAGAGGGTGCCAGCCAGCAGGCAATGAATGCCCAGGAGGGCTTTAAGAGACTTAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CCA 72 bp GTCCCCTGGCTGGCAGCAAACACAGCTGGGTCGAAGTaGCAGGTCTCTGAGTGCCCATTGCAGTCACACCTT +
Preference number: 6 (lower is better)
Translates to: VPWLAANTAGSK*QVSECPLQSHL
Trigger: AAGGTGTGACTGCAATGGGCACTCAGAGACCTGCCACTTCGACCCAGCTGTGTTTGCTGCCAGCCAGGGGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CCA 72 bp TCCCGGCAGTTGTCACACACACCTCCATTTGTCCCCTaGCTGGCAGCAAACACAGCTGGGTCGAAGTGGCAG +
Preference number: 6 (lower is better)
Translates to: SRQLSHTPPFVP*LAANTAGSKWQ
Trigger: CTGCCACTTCGACCCAGCTGTGTTTGCTGCCAGCCAGGGGACAAATGGAGGTGTGTGTGACAACTGCCGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CCA 72 bp GGTCTTCCAGACCTGTCCCTGTCCACAGGCCTTCGGTaGCATTACGGAGACTGTGAAGGCGTCGAGCTTGCT +
Preference number: 6 (lower is better)
Translates to: GLPDLSLSTGLR*HYGDCEGVELA
Trigger: AGCAAGCTCGACGCCTTCACAGTCTCCGTAATGCCACCGAAGGCCTGTGGACAGGGACAGGTCTGGAAGACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CCA 72 bp CTTGCTGTGCAGCCCGGGAGGACTGCTCATAAGCCATaGTCAGCATGCGGAAGGCTCCTGAAGGGTCTTCAC +
Preference number: 6 (lower is better)
Translates to: LAVQPGRTAHKP*SACGRLLKGLH
Trigger: GTGAAGACCCTTCAGGAGCCTTCCGCATGCTGACCATGGCTTATGAGCAGTCCTCCCGGGCTGCACAGCAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CCA 72 bp ACATCTTCCTCCATCAGCAAGCGGCTGGTACTCACCTaGGTCTCAAGGCGCTGGGCATCGGCTTGGACCCTT +
Preference number: 6 (lower is better)
Translates to: TSSSISKRLVLT*VSRRWASAWTL
Trigger: AAGGGTCCAAGCCGATGCCCAGCGCCTTGAGACCCAGGTGAGTACCAGCCGCTTGCTGATGGAGGAAGATGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CCA 72 bp AAGCCCCGGACCTGTTGGATGAGAAGCCGTGTGCGCTaGACATCTTCCTCCATCAGCAAGCGGCTGGTACTC +
Preference number: 6 (lower is better)
Translates to: KPRTCWMRSRVR*TSSSISKRLVL
Trigger: GAGTACCAGCCGCTTGCTGATGGAGGAAGATGTCCAGCGCACACGGCTTCTCATCCAACAGGTCCGGGGCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CCA 72 bp GGCAGCCAGAGAGCCAGCACTGCCTCGCTGACCTGTTaGATGGTGGCTGCATCTGTGTCAGGATCTGTGAGA +
Preference number: 6 (lower is better)
Translates to: GSQRASTASLTC*MVAASVSGSVR
Trigger: TCTCACAGATCCTGACACAGATGCAGCCACCATCCAACAGGTCAGCGAGGCAGTGCTGGCTCTCTGGCTGCC
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CCA 72 bp AGTCTCTTAAAGCCCTCCTGGGCATTCATTGCCTGCTaGCTGGCACCCTCTGCAAGCTGCCGGGCCTGCATT +
Preference number: 6 (lower is better)
Translates to: SLLKPSWAFIAC*LAPSASCRACI
Trigger: AATGCAGGCCCGGCAGCTTGCAGAGGGTGCCAGCCAGCAGGCAATGAATGCCCAGGAGGGCTTTAAGAGACT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CAA 72 bp GGTGAAGCCAGGCTTGCAAAGGTCGCAGCGCTCTCCTaGCACGTACTCTTTGCACACACACTGGCCCGTCAG +
Preference number: 6 (lower is better)
Translates to: GEARLAKVAALS*HVLFAHTLARQ
Trigger: CTGACGGGCCAGTGTGTGTGCAAAGAGTACGTGCAAGGAGAGCGCTGCGACCTTTGCAAGCCTGGCTTCACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CAA 72 bp AAGATACTGCAGTCACAGGCATGGCAGCCCTTCGGGTaGGCGAAGGTGAGCCCGGTGAAGCCAGGCTTGCAA +
Preference number: 6 (lower is better)
Translates to: KILQSQAWQPFG*AKVSPVKPGLQ
Trigger: TTGCAAGCCTGGCTTCACCGGGCTCACCTTCGCCAACCCGAAGGGCTGCCATGCCTGTGACTGCAGTATCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CAA 72 bp CTCTGCCTCCATCTTGATGCTCAGGATTCGATTGCCTaGCTCGCCCAGCACAGGACTCTGACCCAGCCGGTC +
Preference number: 6 (lower is better)
Translates to: LCLHLDAQDSIA*LAQHRTLTQPV
Trigger: GACCGGCTGGGTCAGAGTCCTGTGCTGGGCGAGCAAGGCAATCGAATCCTGAGCATCAAGATGGAGGCAGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CAA 90 bp TCCTCGGCTGCCCTGATCATTTGCCTGGTCTGCTGGAGCTGGGTGTaGAAGTTTCGTAGCTGCTCAGCTACCCGCCCTGCCATGTGGAAG +
Preference number: 6 (lower is better)
Translates to: SSAALIICLVCWSWV*KFRSCSATRPAMWK
Trigger: CTTCCACATGGCAGGGCGGGTAGCTGAGCAGCTACGAAACTTCAACACCCAGCTCCAGCAGACCAGGCAAATGATCAGGGCAGCCGAGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS TCA 72 bp AGCCCCGACAGGTCTGCAGAGCGCAGCATGATAGCCTaGCTCCCTCGAAGCAGCTCTGACTCCATGTCTTTC +
Preference number: 6 (lower is better)
Translates to: SPDRSAERSMIA*LPRSSSDSMSF
Trigger: GAAAGACATGGAGTCAGAGCTGCTTCGAGGGAGTCAGGCTATCATGCTGCGCTCTGCAGACCTGTCGGGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS GCA 72 bp GCAAACACAGCTGGGTCGAAGTGGCAGGTCTCTGAGTaGCCATTGCAGTCACACCTTTGGCACTCGTGGGTG +
Preference number: 6 (lower is better)
Translates to: ANTAGSKWQVSE*PLQSHLWHSWV
Trigger: CACCCACGAGTGCCAAAGGTGTGACTGCAATGGGCACTCAGAGACCTGCCACTTCGACCCAGCTGTGTTTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS GCA 72 bp GTGAAGCCAGGCTTGCAAAGGTCGCAGCGCTCTCCTTaGACGTACTCTTTGCACACACACTGGCCCGTCAGT +
Preference number: 6 (lower is better)
Translates to: VKPGLQRSQRSP*TYSLHTHWPVS
Trigger: ACTGACGGGCCAGTGTGTGTGCAAAGAGTACGTGCAAGGAGAGCGCTGCGACCTTTGCAAGCCTGGCTTCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS GCA 72 bp CAGCCCGGGAGGACTGCTCATAAGCCATGGTCAGCATaGGGAAGGCTCCTGAAGGGTCTTCACTGCTTAGCT +
Preference number: 6 (lower is better)
Translates to: QPGRTAHKPWSA*GRLLKGLHCLA
Trigger: AGCTAAGCAGTGAAGACCCTTCAGGAGCCTTCCGCATGCTGACCATGGCTTATGAGCAGTCCTCCCGGGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS GCA 72 bp CTGGCTCAGCAGGCTAGAACTGTCAGACACTTGCTGTaGAGCCCGGGAGGACTGCTCATAAGCCATGGTCAG +
Preference number: 6 (lower is better)
Translates to: LAQQARTVRHLL*SPGGLLISHGQ
Trigger: CTGACCATGGCTTATGAGCAGTCCTCCCGGGCTGCACAGCAAGTGTCTGACAGTTCTAGCCTGCTGAGCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CCA 72 bp CAGGGCTCACATCATTCTGTGACTGCCACCAGCGCATaGGGCCTGAAGACGATGCGACATTCTCCACTCGGT +
Preference number: 6 (lower is better)
Translates to: QGSHHSVTATSA*GLKTMRHSPLG
Trigger: ACCGAGTGGAGAATGTCGCATCGTCTTCAGGCCCCATGCGCTGGTGGCAGTCACAGAATGATGTGAGCCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000192322.6
ENSMUST00000194677.6
CDS CCA 72 bp ACACACTGGCCCGTCAGTCGGTCACAGGGAGCTCCCTaGACTGCTCCATCTGGATCACACTCACAGGGAATA +
Preference number: 6 (lower is better)
Translates to: THWPVSRSQGAP*TAPSGSHSQGI
Trigger: TATTCCCTGTGAGTGTGATCCAGATGGAGCAGTCCAGGGAGCTCCCTGTGACCGACTGACGGGCCAGTGTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CCA 72 bp ATAGGCCTGGAAGCAGGAGTGGCAGGCCACACATACTaGGTAGCGGTCACAGTGACCTCGTTGGCATTGGTC +
Preference number: 6 (lower is better)
Translates to: IGLEAGVAGHTY*VAVTVTSLALV
Trigger: GACCAATGCCAACGAGGTCACTGTGACCGCTACCCAGTATGTGTGGCCTGCCACTCCTGCTTCCAGGCCTAT
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CCA 72 bp TTGCTCTTGGCATCTAGCAACCGAGAAGCCAGGCCATaGTCTTCCAGACCTGTCCCTGTCCACAGGCCTTCG +
Preference number: 6 (lower is better)
Translates to: LLLASSNREARP*SSRPVPVHRPS
Trigger: CGAAGGCCTGTGGACAGGGACAGGTCTGGAAGACCATGGCCTGGCTTCTCGGTTGCTAGATGCCAAGAGCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CAA 72 bp TTGCAAAGGTCGCAGCGCTCTCCTTGCACGTACTCTTaGCACACACACTGGCCCGTCAGTCGGTCACAGGGA +
Preference number: 6 (lower is better)
Translates to: LQRSQRSPCTYS*HTHWPVSRSQG
Trigger: TCCCTGTGACCGACTGACGGGCCAGTGTGTGTGCAAAGAGTACGTGCAAGGAGAGCGCTGCGACCTTTGCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CAA 72 bp GAAGGGGCACACTGGTCACATTTGGGGCCCACTACATaGGGCAGACACAAGCAGCGTCCGGTTTCCTCCTCA +
Preference number: 6 (lower is better)
Translates to: EGAHWSHLGPTT*GRHKQRPVSSS
Trigger: TGAGGAGGAAACCGGACGCTGCTTGTGTCTGCCCAATGTAGTGGGCCCCAAATGTGACCAGTGTGCCCCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CAA 90 bp TTCCAGTGGGAAGGGGCACACTGGTCACATTTGGGGCCCACTACATaGGGCAGACACAAGCAGCGTCCGGTTTCCTCCTCACAAGGCATA +
Preference number: 6 (lower is better)
Translates to: FQWEGAHWSHLGPTT*GRHKQRPVSSSQGI
Trigger: TATGCCTTGTGAGGAGGAAACCGGACGCTGCTTGTGTCTGCCCAATGTAGTGGGCCCCAAATGTGACCAGTGTGCCCCTTCCCACTGGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CAA 90 bp GGTGGCTGCATCTGTGTCAGGATCTGTGAGAAAGCCCCGGACCTGTaGGATGAGAAGCCGTGTGCGCTGGACATCTTCCTCCATCAGCAA +
Preference number: 6 (lower is better)
Translates to: GGCICVRICEKAPDL*DEKPCALDIFLHQQ
Trigger: TTGCTGATGGAGGAAGATGTCCAGCGCACACGGCTTCTCATCCAACAGGTCCGGGGCTTTCTCACAGATCCTGACACAGATGCAGCCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CAA 90 bp AAAGAGCTCCTCTGCCTCCATCTTGATGCTCAGGATTCGATTGCCTaGCTCGCCCAGCACAGGACTCTGACCCAGCCGGTCCTTCAACTC +
Preference number: 6 (lower is better)
Translates to: KELLCLHLDAQDSIA*LAQHRTLTQPVLQL
Trigger: GAGTTGAAGGACCGGCTGGGTCAGAGTCCTGTGCTGGGCGAGCAAGGCAATCGAATCCTGAGCATCAAGATGGAGGCAGAGGAGCTCTTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS TCA 72 bp CAAGGACCTGCTGAACCTCACCAACCCTTTCCTGGATaGGCCGAAGAGAGCGGCCAGTACCCTGCATTGTGT +
Preference number: 6 (lower is better)
Translates to: QGPAEPHQPFPG*AEESGQYPALC
Trigger: ACACAATGCAGGGTACTGGCCGCTCTCTTCGGCTCATCCAGGAAAGGGTTGGTGAGGTTCAGCAGGTCCTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS GCA 72 bp GGGGCACAGCGGTCACAATTGGGGCCAGCTGTGTTATaGTGGCAGACACAGACATTGTTGACCTGCACAGCA +
Preference number: 6 (lower is better)
Translates to: GAQRSQLGPAVL*WQTQTLLTCTA
Trigger: TGCTGTGCAGGTCAACAATGTCTGTGTCTGCCAGCATAACACAGCTGGCCCCAATTGTGACCGCTGTGCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS GCA 72 bp CCTCACAAGGCATATCTTTCCGGGCACCTAAGATACTaGAGTCACAGGCATGGCAGCCCTTCGGGTTGGCGA +
Preference number: 6 (lower is better)
Translates to: PHKAYLSGHLRY*SHRHGSPSGWR
Trigger: TCGCCAACCCGAAGGGCTGCCATGCCTGTGACTGCAGTATCTTAGGTGCCCGGAAAGATATGCCTTGTGAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CCA 72 bp TCCCGACAAGGACACTGTCCTGTAAACTGGTTGCACTaGGAGCTTAGGGAGTTGCGAGGGTCACAGGCACAG +
Preference number: 6 (lower is better)
Translates to: SRQGHCPVNWLH*ELRELRGSQAQ
Trigger: CTGTGCCTGTGACCCTCGCAACTCCCTAAGCTCCCAGTGCAACCAGTTTACAGGACAGTGTCCTTGTCGGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CCA 72 bp TCTGTGTCAGGATCTGTGAGAAAGCCCCGGACCTGTTaGATGAGAAGCCGTGTGCGCTGGACATCTTCCTCC +
Preference number: 6 (lower is better)
Translates to: SVSGSVRKPRTC*MRSRVRWTSSS
Trigger: GGAGGAAGATGTCCAGCGCACACGGCTTCTCATCCAACAGGTCCGGGGCTTTCTCACAGATCCTGACACAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CCA 72 bp ACTGAGTCCACATTAGGGAGCCTGGCCGCAATGGCCTaGATCTCTTTCATCTTGCGCAGCACTGTGGCTGAG +
Preference number: 6 (lower is better)
Translates to: TESTLGSLAAMA*ISFILRSTVAE
Trigger: CTCAGCCACAGTGCTGCGCAAGATGAAAGAGATCCAGGCCATTGCGGCCAGGCTCCCTAATGTGGACTCAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CAA 72 bp TTCGGTGGCATTACGGAGACTGTGAAGGCGTCGAGCTaGCTCCTGGAGGTCTGTGTCATAGGCCTGGAAGCA +
Preference number: 6 (lower is better)
Translates to: FGGITETVKASS*LLEVCVIGLEA
Trigger: TGCTTCCAGGCCTATGACACAGACCTCCAGGAGCAAGCTCGACGCCTTCACAGTCTCCGTAATGCCACCGAA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CAA 72 bp CCTCAACTGGCTCAGCAGGCTAGAACTGTCAGACACTaGCTGTGCAGCCCGGGAGGACTGCTCATAAGCCAT +
Preference number: 6 (lower is better)
Translates to: PQLAQQARTVRH*LCSPGGLLISH
Trigger: ATGGCTTATGAGCAGTCCTCCCGGGCTGCACAGCAAGTGTCTGACAGTTCTAGCCTGCTGAGCCAGTTGAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CAA 72 bp GGAGTACAGGCTGTCTGCCTAGACCTGCCACAAAGCTaGTTGATGGTGGGTGTCAAGTCAGGCAGCGAAGCC +
Preference number: 6 (lower is better)
Translates to: GVQAVCLDLPQS*LMVGVKSGSEA
Trigger: GGCTTCGCTGCCTGACTTGACACCCACCATCAACAAGCTTTGTGGCAGGTCTAGGCAGACAGCCTGTACTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CAA 90 bp GTGCTGGCACAGTCTGTCGCCAGGTACTGGTACACCCTCCATGTCTaGCCAAAGTCAGAAGAGCGCTCAATCAACATGCCAGCTGGTGTG +
Preference number: 6 (lower is better)
Translates to: VLAQSVARYWYTLHV*PKSEERSINMPAGV
Trigger: CACACCAGCTGGCATGTTGATTGAGCGCTCTTCTGACTTTGGCAAGACATGGAGGGTGTACCAGTACCTGGCGACAGACTGTGCCAGCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000192322.6
ENSMUST00000194677.6
CDS CAA 90 bp TCTCCTGGAGTACAGGCTGTCTGCCTAGACCTGCCACAAAGCTTGTaGATGGTGGGTGTCAAGTCAGGCAGCGAAGCCATTTCTAGGCGC +
Preference number: 6 (lower is better)
Translates to: SPGVQAVCLDLPQSL*MVGVKSGSEAISRR
Trigger: GCGCCTAGAAATGGCTTCGCTGCCTGACTTGACACCCACCATCAACAAGCTTTGTGGCAGGTCTAGGCAGACAGCCTGTACTCCAGGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS GCA 72 bp AGCTCTCCAGGGCAATCTCCTGGAGTACAGGCTGTCTaGCTAGACCTGCCACAAAGCTTGTTGATGGTGGGT +
Preference number: 6 (lower is better)
Translates to: SSPGQSPGVQAV*LDLPQSLLMVG
Trigger: ACCCACCATCAACAAGCTTTGTGGCAGGTCTAGGCAGACAGCCTGTACTCCAGGAGATTGCCCTGGAGAGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS GCA 72 bp ACCCTTGATGCTGCTTCCTCGGCTGCCCTGATCATTTaGCTGGTCTGCTGGAGCTGGGTGTTGAAGTTTCGT +
Preference number: 6 (lower is better)
Translates to: TLDAASSAALII*LVCWSWVLKFR
Trigger: ACGAAACTTCAACACCCAGCTCCAGCAGACCAGGCAAATGATCAGGGCAGCCGAGGAAGCAGCATCAAGGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CCA 72 bp CCAAACCCTTCCCGACAAGGACACTGTCCTGTAAACTaGTTGCACTGGGAGCTTAGGGAGTTGCGAGGGTCA +
Preference number: 6 (lower is better)
Translates to: PNPSRQGHCPVN*LHWELRELRGS
Trigger: TGACCCTCGCAACTCCCTAAGCTCCCAGTGCAACCAGTTTACAGGACAGTGTCCTTGTCGGGAAGGGTTTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CAA 72 bp AACCCTTCCCGACAAGGACACTGTCCTGTAAACTGGTaGCACTGGGAGCTTAGGGAGTTGCGAGGGTCACAG +
Preference number: 6 (lower is better)
Translates to: NPSRQGHCPVNW*HWELRELRGSQ
Trigger: CTGTGACCCTCGCAACTCCCTAAGCTCCCAGTGCAACCAGTTTACAGGACAGTGTCCTTGTCGGGAAGGGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CAA 72 bp ATCTGTGTCAGGATCTGTGAGAAAGCCCCGGACCTGTaGGATGAGAAGCCGTGTGCGCTGGACATCTTCCTC +
Preference number: 6 (lower is better)
Translates to: ICVRICEKAPDL*DEKPCALDIFL
Trigger: GAGGAAGATGTCCAGCGCACACGGCTTCTCATCCAACAGGTCCGGGGCTTTCTCACAGATCCTGACACAGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CAA 90 bp CGGTCACAATTGGGGCCAGCTGTGTTATGCTGGCAGACACAGACATaGTTGACCTGCACAGCAGTGGTAGAACCTCCAGGATTAGGGGCA +
Preference number: 6 (lower is better)
Translates to: RSQLGPAVLCWQTQT*LTCTAVVEPPGLGA
Trigger: TGCCCCTAATCCTGGAGGTTCTACCACTGCTGTGCAGGTCAACAATGTCTGTGTCTGCCAGCATAACACAGCTGGCCCCAATTGTGACCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS TCA 72 bp CCTTTCACCAGCCTTTCAGCTGGTACAAGGACCTGCTaGACCTCACCAACCCTTTCCTGGATGAGCCGAAGA +
Preference number: 6 (lower is better)
Translates to: PFTSLSAGTRTC*TSPTLSWMSRR
Trigger: TCTTCGGCTCATCCAGGAAAGGGTTGGTGAGGTTCAGCAGGTCCTTGTACCAGCTGAAAGGCTGGTGAAAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS TCA 72 bp AGGATTCGATTGCCTTGCTCGCCCAGCACAGGACTCTaGCCCAGCCGGTCCTTCAACTCTGTATACTTTTGC +
Preference number: 6 (lower is better)
Translates to: RIRLPCSPSTGL*PSRSFNSVYFC
Trigger: GCAAAAGTATACAGAGTTGAAGGACCGGCTGGGTCAGAGTCCTGTGCTGGGCGAGCAAGGCAATCGAATCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CAA 72 bp TTGGGGCCAGCTGTGTTATGCTGGCAGACACAGACATaGTTGACCTGCACAGCAGTGGTAGAACCTCCAGGA +
Preference number: 6 (lower is better)
Translates to: LGPAVLCWQTQT*LTCTAVVEPPG
Trigger: TCCTGGAGGTTCTACCACTGCTGTGCAGGTCAACAATGTCTGTGTCTGCCAGCATAACACAGCTGGCCCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CAA 72 bp GTACAGGCTGTCTGCCTAGACCTGCCACAAAGCTTGTaGATGGTGGGTGTCAAGTCAGGCAGCGAAGCCATT +
Preference number: 6 (lower is better)
Translates to: VQAVCLDLPQSL*MVGVKSGSEAI
Trigger: AATGGCTTCGCTGCCTGACTTGACACCCACCATCAACAAGCTTTGTGGCAGGTCTAGGCAGACAGCCTGTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CAA 90 bp TCACAATTGGGGCCAGCTGTGTTATGCTGGCAGACACAGACATTGTaGACCTGCACAGCAGTGGTAGAACCTCCAGGATTAGGGGCACAG +
Preference number: 6 (lower is better)
Translates to: SQLGPAVLCWQTQTL*TCTAVVEPPGLGAQ
Trigger: CTGTGCCCCTAATCCTGGAGGTTCTACCACTGCTGTGCAGGTCAACAATGTCTGTGTCTGCCAGCATAACACAGCTGGCCCCAATTGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CAA 90 bp CAATCTCCTGGAGTACAGGCTGTCTGCCTAGACCTGCCACAAAGCTaGTTGATGGTGGGTGTCAAGTCAGGCAGCGAAGCCATTTCTAGG +
Preference number: 6 (lower is better)
Translates to: QSPGVQAVCLDLPQS*LMVGVKSGSEAISR
Trigger: CCTAGAAATGGCTTCGCTGCCTGACTTGACACCCACCATCAACAAGCTTTGTGGCAGGTCTAGGCAGACAGCCTGTACTCCAGGAGATTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS TCA 72 bp TTGGTCAATCCACAGGTAGATGAGGCTCGAAGAAGCTaGGTCCTTCCAATGAGCAAGTCCCCCACAGGTGGA +
Preference number: 6 (lower is better)
Translates to: LVNPQVDEARRS*VLPMSKSPTGG
Trigger: TCCACCTGTGGGGGACTTGCTCATTGGAAGGACTCAGCTTCTTCGAGCCTCATCTACCTGTGGATTGACCAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000192322.6
ENSMUST00000194677.6
CDS GCA 72 bp AGTCTGTCGCCAGGTACTGGTACACCCTCCATGTCTTaGCAAAGTCAGAAGAGCGCTCAATCAACATGCCAG +
Preference number: 6 (lower is better)
Translates to: SLSPGTGTPSMS*QSQKSAQSTCQ
Trigger: CTGGCATGTTGATTGAGCGCTCTTCTGACTTTGGCAAGACATGGAGGGTGTACCAGTACCTGGCGACAGACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000192322.6
ENSMUST00000194677.6
CDS GCA 72 bp GCTGTGTTATGCTGGCAGACACAGACATTGTTGACCTaGACAGCAGTGGTAGAACCTCCAGGATTAGGGGCA +
Preference number: 6 (lower is better)
Translates to: AVLCWQTQTLLT*TAVVEPPGLGA
Trigger: TGCCCCTAATCCTGGAGGTTCTACCACTGCTGTGCAGGTCAACAATGTCTGTGTCTGCCAGCATAACACAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CCA 72 bp CAGTCGGTCACAGGGAGCTCCCTGGACTGCTCCATCTaGATCACACTCACAGGGAATACAAGTCTCATGAAT +
Preference number: 6 (lower is better)
Translates to: QSVTGSSLDCSI*ITLTGNTSLMN
Trigger: ATTCATGAGACTTGTATTCCCTGTGAGTGTGATCCAGATGGAGCAGTCCAGGGAGCTCCCTGTGACCGACTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CAA 72 bp CAGTCTGTCGCCAGGTACTGGTACACCCTCCATGTCTaGCCAAAGTCAGAAGAGCGCTCAATCAACATGCCA +
Preference number: 6 (lower is better)
Translates to: QSVARYWYTLHV*PKSEERSINMP
Trigger: TGGCATGTTGATTGAGCGCTCTTCTGACTTTGGCAAGACATGGAGGGTGTACCAGTACCTGGCGACAGACTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000192322.6
ENSMUST00000194677.6
CDS CAA 90 bp ACAGAAGTGCCTTCCAGAATCTGTCTGATCTGCTCAATCTTGCTCTaGGCATCTAGCAACCGAGAAGCCAGGCCATGGTCTTCCAGACCT +
Preference number: 6 (lower is better)
Translates to: TEVPSRICLICSILL*ASSNREARPWSSRP
Trigger: AGGTCTGGAAGACCATGGCCTGGCTTCTCGGTTGCTAGATGCCAAGAGCAAGATTGAGCAGATCAGACAGATTCTGGAAGGCACTTCTGT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CAA 90 bp CAGCACAGGACTCTGACCCAGCCGGTCCTTCAACTCTGTATACTTTaGCTTAAGTCTCTTAAAGCCCTCCTGGGCATTCATTGCCTGCTG +
Preference number: 6 (lower is better)
Translates to: QHRTLTQPVLQLCIL*LKSLKALLGIHCLL
Trigger: CAGCAGGCAATGAATGCCCAGGAGGGCTTTAAGAGACTTAAGCAAAAGTATACAGAGTTGAAGGACCGGCTGGGTCAGAGTCCTGTGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS GCA 72 bp TGGTCAGCATGCGGAAGGCTCCTGAAGGGTCTTCACTaGTTAGCTTCTCAAATTGCTCCTTCTTGCTTCGGT +
Preference number: 6 (lower is better)
Translates to: WSACGRLLKGLH*LASQIAPSCFG
Trigger: ACCGAAGCAAGAAGGAGCAATTTGAGAAGCTAAGCAGTGAAGACCCTTCAGGAGCCTTCCGCATGCTGACCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS GCA 72 bp TCATCCGTGCCCAGAATCCACTCATCTGTTCCTTCATaGCTTTCACCAGCCTTTCAGCTGGTACAAGGACCT +
Preference number: 6 (lower is better)
Translates to: SSVPRIHSSVPS*LSPAFQLVQGP
Trigger: AGGTCCTTGTACCAGCTGAAAGGCTGGTGAAAGGCATGAAGGAACAGATGAGTGGATTCTGGGCACGGATGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CCA 72 bp TCTCCACTCGGTGACTGTTGTAATTTCGAGGCAGCCTaGAGTCACACTTGCAGCATTTCATCTGCCACTGTC +
Preference number: 6 (lower is better)
Translates to: SPLGDCCNFEAA*SHTCSISSATV
Trigger: GACAGTGGCAGATGAAATGCTGCAAGTGTGACTCCAGGCTGCCTCGAAATTACAACAGTCACCGAGTGGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000192322.6
ENSMUST00000194677.6
CDS TCA 72 bp GCTGGTGTGAGACCCTTAAAATCCATCATGATGTCCTaGAGCTGCATCCTCTTGTCTAGGTCCAGCTGCAGA +
Preference number: 6 (lower is better)
Translates to: AGVRPLKSIMMS*SCILLSRSSCR
Trigger: TCTGCAGCTGGACCTAGACAAGAGGATGCAGCTTCAGGACATCATGATGGATTTTAAGGGTCTCACACCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000192322.6
ENSMUST00000194677.6
CDS GCA 72 bp GCTCCTGAAGGGTCTTCACTGCTTAGCTTCTCAAATTaGTCCTTCTTGCTTCGGTACATAAGGAGGAGCCGA +
Preference number: 6 (lower is better)
Translates to: APEGSSLLSFSN*SFLLRYIRRSR
Trigger: TCGGCTCCTCCTTATGTACCGAAGCAAGAAGGAGCAATTTGAGAAGCTAAGCAGTGAAGACCCTTCAGGAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CCA 72 bp GCAGGGATAGCTGATGCTAAATCCATAAGGTTAAGTTaGACCTTTCCCCCAGTCAGATGCCCATTAGGCCTC +
Preference number: 6 (lower is better)
Translates to: AGIADAKSIRLS*TFPPVRCPLGL
Trigger: GAGGCCTAATGGGCATCTGACTGGGGGAAAGGTCCAACTTAACCTTATGGATTTAGCATCAGCTATCCCTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000192322.6
ENSMUST00000194677.6
CDS CCA 72 bp ACTCACAGGGAATACAAGTCTCATGAATGGGAGCGCTaGGTCGTCTATTCCGGAAATAGTGTAGCTGACAGC +
Preference number: 6 (lower is better)
Translates to: THREYKSHEWER*VVYSGNSVADS
Trigger: GCTGTCAGCTACACTATTTCCGGAATAGACGACCCAGCGCTCCCATTCATGAGACTTGTATTCCCTGTGAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS CCA 72 bp TCTGTATACTTTTGCTTAAGTCTCTTAAAGCCCTCCTaGGCATTCATTGCCTGCTGGCTGGCACCCTCTGCA +
Preference number: 6 (lower is better)
Translates to: SVYFCLSLLKPS*AFIACWLAPSA
Trigger: TGCAGAGGGTGCCAGCCAGCAGGCAATGAATGCCCAGGAGGGCTTTAAGAGACTTAAGCAAAAGTATACAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS TCA 72 bp GCAATAGGTCTCAGGTTTGGTCAATCCACAGGTAGATaGGGCTCGAAGAAGCTGAGTCCTTCCAATGAGCAA +
Preference number: 6 (lower is better)
Translates to: AIGLRFGQSTGR*GSKKLSPSNEQ
Trigger: TTGCTCATTGGAAGGACTCAGCTTCTTCGAGCCTCATCTACCTGTGGATTGACCAAACCTGAGACCTATTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000192322.6
ENSMUST00000194677.6
CDS CCA 72 bp GCCAAAGTCAGAAGAGCGCTCAATCAACATGCCAGCTaGTGTGAGACCCTTAAAATCCATCATGATGTCCTG +
Preference number: 6 (lower is better)
Translates to: AKVRRALNQHAS*CETLKIHHDVL
Trigger: CAGGACATCATGATGGATTTTAAGGGTCTCACACCAGCTGGCATGTTGATTGAGCGCTCTTCTGACTTTGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000192322.6
ENSMUST00000194677.6
CDS CAA 72 bp GGGTCTTCACTGCTTAGCTTCTCAAATTGCTCCTTCTaGCTTCGGTACATAAGGAGGAGCCGACTGAAGCTT +
Preference number: 6 (lower is better)
Translates to: GSSLLSFSNCSF*LRYIRRSRLKL
Trigger: AAGCTTCAGTCGGCTCCTCCTTATGTACCGAAGCAAGAAGGAGCAATTTGAGAAGCTAAGCAGTGAAGACCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6
CDS GCA 72 bp TCTGTGACAGAAGTGCCTTCCAGAATCTGTCTGATCTaGTCAATCTTGCTCTTGGCATCTAGCAACCGAGAA +
Preference number: 6 (lower is better)
Translates to: SVTEVPSRICLI*SILLLASSNRE
Trigger: TTCTCGGTTGCTAGATGCCAAGAGCAAGATTGAGCAGATCAGACAGATTCTGGAAGGCACTTCTGTCACAGA
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000016315.16
ENSMUST00000159955.2
ENSMUST00000194677.6