Pregenerated sensors for LALBA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022991Ensembl transcript IDs: ENSMUST00000023726.5
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | TTTGTAAAACCCCCATCGAGACCCTCGCCGTCACTAAGCAAGGGTTTGCAGTCCGCTTCTCAGAGCACATaGGCTTGTAGGCTTTCCAGT | + |
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Preference number: 4 (lower is better) Translates to: FVKPPSRPSPSLSKGLQSASQST*ACRLSS Trigger: ACTGGAAAGCCTACAAGCCCATGTGCTCTGAGAAGC...GGACTGCAAACCCTTGCTTAGTGACGGCGAGGGTCTCGATGGGGGTTTTACAAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023726.5 |
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| CDS-3UTR GCA 90 bp | TCCTCTAGAGTCCGGTGGTGTCACTACAGGGTACAAGGCTCAGAGGCAGATCATACTTGTCACAGGAGATaGCACAGATGTTCTCCGACT | + |
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Preference number: 4 (lower is better) Translates to: SSRVRWCHYRVQGSEADHTCHRR*HRCSPT Trigger: AGTCGGAGAACATCTGTGGCATCTCCTGTGACAAGT...ATGATCTGCCTCTGAGCCTTGTACCCTGTAGTGACACCACCGGACTCTAGAGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023726.5 |
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| CDS-3UTR TCA 90 bp | TGGTGTCACTACAGGGTACAAGGCTCAGAGGCAGATCATCTTCACAGGAATAGCGTAAGCTCTGTGGCTTaGAAGGCAGGCAACGACAAA | + |
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Preference number: 4 (lower is better) Translates to: WCHYRVQGSEADHLHRNSVSSVA*KAGNDK Trigger: TTTGTCGTTGCCTGCCTTTCAAGCCACAGAGCTTAC...GCTATTCCTGTGAAGATGATCTGCCTCTGAGCCTTGTACCCTGTAGTGACACCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023726.5 |
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| CDS-3UTR CCA 90 bp | GTAAAACCCCCATCGAGACCCTCGCCGTCACTAAGCAAGGGTTTGCAGTCCAGTGTGTGTCGTAGCCACTaGTATGAAATAAAACACAGG | + |
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Preference number: 4 (lower is better) Translates to: VKPPSRPSPSLSKGLQSSVCRSH*YEIKHR Trigger: CCTGTGTTTTATTTCATACCAGTGGCTACGACACAC...ACTGGACTGCAAACCCTTGCTTAGTGACGGCGAGGGTCTCGATGGGGGTTTTAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000023726.5 |
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| CDS-3UTR GCA 90 bp | GATCATCTTCACAGGAATAGCAAGAGCCAAGCTGAGGTAGCCTTAGGGAAGAGGATTCAAGCAAAGAGATaGCTTGATAGCCATCTATGT | + |
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Preference number: 4 (lower is better) Translates to: DHLHRNSKSQAEVALGKRIQAKR*LDSHLC Trigger: ACATAGATGGCTATCAAGGCATCTCTTTGCTTGAAT...CCTCTTCCCTAAGGCTACCTCAGCTTGGCTCTTGCTATTCCTGTGAAGATGATC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023726.5 |
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| CDS-3UTR CAA 90 bp | TGTAAAACCCCCATCGAGACCCTCGCCGTCACTAAGCAAGGGTTTGCAGTCCAGATGGCATGGGACACCTaGCATTTTGTAAGCTCTGTG | + |
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Preference number: 5 (lower is better) Translates to: CKTPIETLAVTKQGFAVQMAWDT*HFVSSV Trigger: CACAGAGCTTACAAAATGCAAGGTGTCCCATGCCAT...CTGGACTGCAAACCCTTGCTTAGTGACGGCGAGGGTCTCGATGGGGGTTTTACA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000023726.5 |
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| CDS-3UTR CAA 90 bp | GTAAAACCCCCATCGAGACCCTCGCCGTCACTAAGCAAGGGTTTGCAGTCCAGTATAGCCAGGATCTTCTaGGCACACGCTATGTCATCA | + |
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Preference number: 5 (lower is better) Translates to: VKPPSRPSPSLSKGLQSSIARIF*AHAMSS Trigger: TGATGACATAGCGTGTGCCAAGAAGATCCTGGCTAT...ACTGGACTGCAAACCCTTGCTTAGTGACGGCGAGGGTCTCGATGGGGGTTTTAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023726.5 |
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| CDS-3UTR CAA 90 bp | CTAGAGTCCGGTGGTGTCACTACAGGGTACAAGGCTCAGAGGCAGATCATCTTCAAGCAAAGAGATGCCTaGATAGCCATCTATGTCTTT | + |
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Preference number: 5 (lower is better) Translates to: LESGGVTTGYKAQRQIIFKQRDA*IAIYVF Trigger: AAAGACATAGATGGCTATCAAGGCATCTCTTTGCTT...GAAGATGATCTGCCTCTGAGCCTTGTACCCTGTAGTGACACCACCGGACTCTAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023726.5 |
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| CDS GCA 90 bp | CTATGTCATCATCCAACTCGTCATCCAATAACTTGTCACAGGAGATaGCACAGATGTTCTCCGACTCGGGGAACTCACTACTTTTACACC | + |
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Preference number: 5 (lower is better) Translates to: LCHHPTRHPITCHRR*HRCSPTRGTHYFYT Trigger: GGTGTAAAAGTAGTGAGTTCCCCGAGTCGGAGAACATCTGTGGCATCTCCTGTGACAAGTTATTGGATGACGAGTTGGATGATGACATAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023726.5 |
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| CDS TCA 72 bp | TCTGGAAGAGTCCGTACTCTGTGCTGCCGTTGTCGTTaGCAACAGCTTGTGTGTCGTAGCCACTGGTATGAA | + |
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Preference number: 6 (lower is better) Translates to: SGRVRTLCCRCR*QQLVCRSHWYE Trigger: TTCATACCAGTGGCTACGACACACAAGCTGTTGTCAACGACAACGGCAGCACAGAGTACGGACTCTTCCAGA 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023726.5 |
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| CDS GCA 72 bp | CATCCAACTCGTCATCCAATAACTTGTCACAGGAGATaGCACAGATGTTCTCCGACTCGGGGAACTCACTAC | + |
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Preference number: 6 (lower is better) Translates to: HPTRHPITCHRR*HRCSPTRGTHY Trigger: GTAGTGAGTTCCCCGAGTCGGAGAACATCTGTGGCATCTCCTGTGACAAGTTATTGGATGACGAGTTGGATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023726.5 |
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| CDS CAA 72 bp | GGCATGGGACACCTTGCATTTTGTAAGCTCTGTGGCTaGAAAGGCAGGCAACGACAAAATACACACCAGGAA | + |
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Preference number: 6 (lower is better) Translates to: GMGHLAFCKLCG*KGRQRQNTHQE Trigger: TTCCTGGTGTGTATTTTGTCGTTGCCTGCCTTTCAAGCCACAGAGCTTACAAAATGCAAGGTGTCCCATGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023726.5 |
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| CDS CAA 72 bp | CACGCTATGTCATCATCCAACTCGTCATCCAATAACTaGTCACAGGAGATGCCACAGATGTTCTCCGACTCG | + |
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Preference number: 6 (lower is better) Translates to: HAMSSSNSSSNN*SQEMPQMFSDS Trigger: CGAGTCGGAGAACATCTGTGGCATCTCCTGTGACAAGTTATTGGATGACGAGTTGGATGATGACATAGCGTG 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023726.5 |
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| CDS CAA 90 bp | GTCTTTAATGGCATGGGACACCTTGCATTTTGTAAGCTCTGTGGCTaGAAAGGCAGGCAACGACAAAATACACACCAGGAACAAAGGAAC | + |
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Preference number: 6 (lower is better) Translates to: VFNGMGHLAFCKLCG*KGRQRQNTHQEQRN Trigger: GTTCCTTTGTTCCTGGTGTGTATTTTGTCGTTGCCTGCCTTTCAAGCCACAGAGCTTACAAAATGCAAGGTGTCCCATGCCATTAAAGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023726.5 |
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| CDS CCA 72 bp | AACTCACTACTTTTACACCAAAATCTGTCACTGATCTaGAAGAGTCCGTACTCTGTGCTGCCGTTGTCGTTG | + |
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Preference number: 6 (lower is better) Translates to: NSLLLHQNLSLI*KSPYSVLPLSL Trigger: CAACGACAACGGCAGCACAGAGTACGGACTCTTCCAGATCAGTGACAGATTTTGGTGTAAAAGTAGTGAGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023726.5 |
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