RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LAG3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000030124

Ensembl transcript IDs: ENSMUST00000032217.2

Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR CCA 90 bp TTCGGGCGGGCGGGCGGGCGGGCGGAGCTGCTGAGACCTGCTGGCTGCCTCGGCGAGAAGTCCCCGCGCTaGAGGCCGCGCTCCTCCAGC +
Preference number: 4 (lower is better)
Translates to: FGRAGGRAELLRPAGCLGEKSPR*RPRSSS
Trigger: GCTGGAGGAGCGCGGCCTCCAGCGCGGGGACTTCTC...GCCGAGGCAGCCAGCAGGTCTCAGCAGCTCCGCCCGCCCGCCCGCCCGCCCGAA
77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS-3UTR GCA 90 bp GAGTTTATTCGGGCGGGCGGGCGGGCGGGCGGAGCTGCTGAGACCTGCTGGCTGTGGGGATGCAGGGGCTaGCTCCCGCTGCGCAGGCCT +
Preference number: 4 (lower is better)
Translates to: EFIRAGGRAGGAAETCWLWGCRG*LPLRRP
Trigger: AGGCCTGCGCAGCGGGAGGCAGCCCCTGCATCCCCA...CAGCCAGCAGGTCTCAGCAGCTCCGCCCGCCCGCCCGCCCGCCCGAATAAACTC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS-3UTR CCA 90 bp TTTATTCGGGCGGGCGGGCGGGCGGGCGGAGCTGCTGAGACCTGCTGGCTGCCTACGGGAGCTCCCTCCTaGGCCCACACCACGGGGAGC +
Preference number: 4 (lower is better)
Translates to: FIRAGGRAGGAAETCWLPTGAPS*AHTTGS
Trigger: GCTCCCCGTGGTGTGGGCCCAGGAGGGAGCTCCCGT...AGGCAGCCAGCAGGTCTCAGCAGCTCCGCCCGCCCGCCCGCCCGCCCGAATAAA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS-3UTR GCA 90 bp ATGCTGCTGACAGGGAGTTTATTCGGGCGGGCGGGCGGGCGGGCGGAGCTGCTGCCGCGCTCCTCCAGCTaGACGTGGGGATGCAGGGGC +
Preference number: 4 (lower is better)
Translates to: MLLTGSLFGRAGGRAELLPRSSS*TWGCRG
Trigger: GCCCCTGCATCCCCACGTGCAGCTGGAGGAGCGCGG...CAGCAGCTCCGCCCGCCCGCCCGCCCGCCCGAATAAACTCCCTGTCAGCAGCAT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS-3UTR GCA 90 bp CTGCTGACAGGGAGTTTATTCGGGCGGGCGGGCGGGCGGGCGGAGCTGCTGAGACGCGCAGGCGGAGACTaGAGGAGAGGGCGCGGTTCG +
Preference number: 4 (lower is better)
Translates to: LLTGSLFGRAGGRAELLRRAGGD*RRGRGS
Trigger: CGAACCGCGCCCTCTCCTGCAGTCTCCGCCTGCGCG...TCTCAGCAGCTCCGCCCGCCCGCCCGCCCGCCCGAATAAACTCCCTGTCAGCAG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS-3UTR CCA 90 bp TTTATTCGGGCGGGCGGGCGGGCGGGCGGAGCTGCTGAGACCTGCTGGCTGCCTGCTGCGCAGGCCTCCTaGAGCCACGCTCAGCACCGT +
Preference number: 4 (lower is better)
Translates to: FIRAGGRAGGAAETCWLPAAQAS*SHAQHR
Trigger: ACGGTGCTGAGCGTGGCTCCAGGAGGCCTGCGCAGC...AGGCAGCCAGCAGGTCTCAGCAGCTCCGCCCGCCCGCCCGCCCGCCCGAATAAA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS-3UTR CCA 90 bp CTGCTGACAGGGAGTTTATTCGGGCGGGCGGGCGGGCGGGCGGAGCTGCTGAGACTCTGGCTCCAGCTGTaGCTCCGGCTCGGGCTCCGG +
Preference number: 4 (lower is better)
Translates to: LLTGSLFGRAGGRAELLRLWLQL*LRLGLR
Trigger: CCGGAGCCCGAGCCGGAGCCACAGCTGGAGCCAGAG...TCTCAGCAGCTCCGCCCGCCCGCCCGCCCGCCCGAATAAACTCCCTGTCAGCAG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS-3UTR TCA 90 bp ATTCGGGCGGGCGGGCGGGCGGGCGGAGCTGCTGAGACCTGCTGGCTGCCTCGGCCAGGTTGGGGGATTTaGGGCTGCAGGGAAGATGGA +
Preference number: 4 (lower is better)
Translates to: IRAGGRAGGAAETCWLPRPGWGI*GCREDG
Trigger: TCCATCTTCCCTGCAGCCTCAAATCCCCCAACCTGG...CCGAGGCAGCCAGCAGGTCTCAGCAGCTCCGCCCGCCCGCCCGCCCGCCCGAAT
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS-3UTR TCA 90 bp TTTATTCGGGCGGGCGGGCGGGCGGGCGGAGCTGCTGAGACCTGCTGGCTGCCTGAGGGCATCCCCTGGTaGAGGTCAAGGGCCGGGATG +
Preference number: 4 (lower is better)
Translates to: FIRAGGRAGGAAETCWLPEGIPW*RSRAGM
Trigger: CATCCCGGCCCTTGACCTTCACCAGGGGATGCCCTC...AGGCAGCCAGCAGGTCTCAGCAGCTCCGCCCGCCCGCCCGCCCGCCCGAATAAA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS-3UTR TCA 90 bp GGGAGTTTATTCGGGCGGGCGGGCGGGCGGGCGGAGCTGCTGAGACCTGCTGGCCAGAGTCCAGGGGGCTaGCTTGGGGCAGTAACAGGA +
Preference number: 4 (lower is better)
Translates to: GSLFGRAGGRAELLRPAGQSPGG*LGAVTG
Trigger: TCCTGTTACTGCCCCAAGTCAGCCCCCTGGACTCTG...GCCAGCAGGTCTCAGCAGCTCCGCCCGCCCGCCCGCCCGCCCGAATAAACTCCC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS-3UTR TCA 90 bp GGGAGTTTATTCGGGCGGGCGGGCGGGCGGGCGGAGCTGCTGAGACCTGCTGGCTGGCCCTCGTACAGCTaGCACTGCCATCGCTCAGCA +
Preference number: 4 (lower is better)
Translates to: GSLFGRAGGRAELLRPAGWPSYS*HCHRSA
Trigger: TGCTGAGCGATGGCAGTGTCAGCTGTACGAGGGCCA...GCCAGCAGGTCTCAGCAGCTCCGCCCGCCCGCCCGCCCGCCCGAATAAACTCCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS-3UTR CCA 90 bp AGTTTATTCGGGCGGGCGGGCGGGCGGGCGGAGCTGCTGAGACCTGCTGGCTGCAGGCTGCAGGGAAGATaGACGGGAGCTCCCTCCTGG +
Preference number: 4 (lower is better)
Translates to: SLFGRAGGRAELLRPAGCRLQGR*TGAPSW
Trigger: CCAGGAGGGAGCTCCCGTCCATCTTCCCTGCAGCCT...GCAGCCAGCAGGTCTCAGCAGCTCCGCCCGCCCGCCCGCCCGCCCGAATAAACT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS-3UTR CCA 90 bp GCTGCTGACAGGGAGTTTATTCGGGCGGGCGGGCGGGCGGGCGGAGCTGCTGAGGGGCCGGGATGGGAGTaGGTTGGCCACTGTCTGGTT +
Preference number: 4 (lower is better)
Translates to: AADREFIRAGGRAGGAAEGPGWE*VGHCLV
Trigger: AACCAGACAGTGGCCAACCCACTCCCATCCCGGCCC...CTCAGCAGCTCCGCCCGCCCGCCCGCCCGCCCGAATAAACTCCCTGTCAGCAGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS-3UTR TCA 90 bp GGGAGTTTATTCGGGCGGGCGGGCGGGCGGGCGGAGCTGCTGAGACCTGCTGGCGGCGGTCAGGACGGCTaGAGGAGCAGTTCAAAAGGA +
Preference number: 4 (lower is better)
Translates to: GSLFGRAGGRAELLRPAGGGQDG*RSSSKG
Trigger: TCCTTTTGAACTGCTCCTTCAGCCGTCCTGACCGCC...GCCAGCAGGTCTCAGCAGCTCCGCCCGCCCGCCCGCCCGCCCGAATAAACTCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS-3UTR TCA 90 bp AGTTTATTCGGGCGGGCGGGCGGGCGGGCGGAGCTGCTGAGACCTGCTGGCTGCACTCCTGGGGGCAAATaGCAGGGCAGCTCCACCCTA +
Preference number: 4 (lower is better)
Translates to: SLFGRAGGRAELLRPAGCTPGGK*QGSSTL
Trigger: TAGGGTGGAGCTGCCCTGTCATTTGCCCCCAGGAGT...GCAGCCAGCAGGTCTCAGCAGCTCCGCCCGCCCGCCCGCCCGCCCGAATAAACT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS-3UTR GCA 90 bp TTTATTCGGGCGGGCGGGCGGGCGGGCGGAGCTGCTGAGACCTGCTGGCTGCCTTGGCCCTGGAACCAGTaGACAGAGACTGGGCGGTCA +
Preference number: 4 (lower is better)
Translates to: FIRAGGRAGGAAETCWLPWPWNQ*TETGRS
Trigger: TGACCGCCCAGTCTCTGTGCACTGGTTCCAGGGCCA...AGGCAGCCAGCAGGTCTCAGCAGCTCCGCCCGCCCGCCCGCCCGCCCGAATAAA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS-3UTR TCA 90 bp ATGCTGCTGACAGGGAGTTTATTCGGGCGGGCGGGCGGGCGGGCGGAGCTGCTGAGCCATCTCTGTAGGTaGGGACACAGCCCCAGGTCC +
Preference number: 4 (lower is better)
Translates to: MLLTGSLFGRAGGRAELLSHLCR*GHSPRS
Trigger: GGACCTGGGGCTGTGTCCTCACCTACAGAGATGGCT...CAGCAGCTCCGCCCGCCCGCCCGCCCGCCCGAATAAACTCCCTGTCAGCAGCAT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS-3UTR GCA 90 bp ATGCTGCTGACAGGGAGTTTATTCGGGCGGGCGGGCGGGCGGGCGGAGCTGCTGGTAGGTCCCAGCCTGTaGCAGACCCACAGCCTCAAG +
Preference number: 4 (lower is better)
Translates to: MLLTGSLFGRAGGRAELLVGPSL*QTHSLK
Trigger: CTTGAGGCTGTGGGTCTGGCACAGGCTGGGACCTAC...CAGCAGCTCCGCCCGCCCGCCCGCCCGCCCGAATAAACTCCCTGTCAGCAGCAT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS-3UTR CCA 90 bp GAGTTTATTCGGGCGGGCGGGCGGGCGGGCGGAGCTGCTGAGACCTGCTGGCTGATCGGTGCGCAGAGCTaGGCGCAACCACAGAGAGAA +
Preference number: 4 (lower is better)
Translates to: EFIRAGGRAGGAAETCWLIGAQS*AQPQRE
Trigger: TTCTCTCTGTGGTTGCGCCCAGCTCTGCGCACCGAT...CAGCCAGCAGGTCTCAGCAGCTCCGCCCGCCCGCCCGCCCGCCCGAATAAACTC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS-3UTR CCA 90 bp AGGGAGTTTATTCGGGCGGGCGGGCGGGCGGGCGGAGCTGCTGAGACCTGCTGGGCTCAGCAAGGAGCCTaGCCTCCTGAATCTCCAGCA +
Preference number: 4 (lower is better)
Translates to: REFIRAGGRAGGAAETCWAQQGA*PPESPA
Trigger: TGCTGGAGATTCAGGAGGCCAGGCTCCTTGCTGAGC...CCAGCAGGTCTCAGCAGCTCCGCCCGCCCGCCCGCCCGCCCGAATAAACTCCCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS-3UTR TCA 90 bp AGTTTATTCGGGCGGGCGGGCGGGCGGGCGGAGCTGCTGAGACCTGCTGGCTGCGAGTCCACTTGGCAATaGGCAAAGAAGGGGTCCCCA +
Preference number: 4 (lower is better)
Translates to: SLFGRAGGRAELLRPAGCESTWQ*AKKGSP
Trigger: TGGGGACCCCTTCTTTGCTCATTGCCAAGTGGACTC...GCAGCCAGCAGGTCTCAGCAGCTCCGCCCGCCCGCCCGCCCGCCCGAATAAACT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS-3UTR GCA 90 bp TTTATTCGGGCGGGCGGGCGGGCGGGCGGAGCTGCTGAGACCTGCTGGCTGCCTGTCCCTGCAGATGGATaGTACAGGTGTAGGTCCCAG +
Preference number: 4 (lower is better)
Translates to: FIRAGGRAGGAAETCWLPVPADG*YRCRSQ
Trigger: CTGGGACCTACACCTGTAGCATCCATCTGCAGGGAC...AGGCAGCCAGCAGGTCTCAGCAGCTCCGCCCGCCCGCCCGCCCGCCCGAATAAA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS-3UTR TCA 90 bp AGTTTATTCGGGCGGGCGGGCGGGCGGGCGGAGCTGCTGAGACCTGCTGGCTGCTGGCCACTGTCTGGTTaGTGTTGCCAGATAACCCCT +
Preference number: 4 (lower is better)
Translates to: SLFGRAGGRAELLRPAGCWPLSG*CCQITP
Trigger: AGGGGTTATCTGGCAACATCAACCAGACAGTGGCCA...GCAGCCAGCAGGTCTCAGCAGCTCCGCCCGCCCGCCCGCCCGCCCGAATAAACT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS-3UTR GCA 90 bp TTTATTCGGGCGGGCGGGCGGGCGGGCGGAGCTGCTGAGACCTGCTGGCTGCCTTTGAGCTGCTGTCCCTaGAGATGGATGCTACAGGTG +
Preference number: 4 (lower is better)
Translates to: FIRAGGRAGGAAETCWLPLSCCP*RWMLQV
Trigger: CACCTGTAGCATCCATCTGCAGGGACAGCAGCTCAA...AGGCAGCCAGCAGGTCTCAGCAGCTCCGCCCGCCCGCCCGCCCGCCCGAATAAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS-3UTR CCA 90 bp TTTATTCGGGCGGGCGGGCGGGCGGGCGGAGCTGCTGAGACCTGCTGGCTGCCTTCCAGGGGGCTGACTTaGGGCAGTAACAGGAAAGTT +
Preference number: 4 (lower is better)
Translates to: FIRAGGRAGGAAETCWLPSRGLT*GSNRKV
Trigger: AACTTTCCTGTTACTGCCCCAAGTCAGCCCCCTGGA...AGGCAGCCAGCAGGTCTCAGCAGCTCCGCCCGCCCGCCCGCCCGCCCGAATAAA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS-3UTR GCA 90 bp ATGCTGCTGACAGGGAGTTTATTCGGGCGGGCGGGCGGGCGGGCGGAGCTGCTGACAGTGGCATTGAGCTaGTGTCCCTGCAGATGGATG +
Preference number: 4 (lower is better)
Translates to: MLLTGSLFGRAGGRAELLTVALS*CPCRWM
Trigger: CATCCATCTGCAGGGACAGCAGCTCAATGCCACTGT...CAGCAGCTCCGCCCGCCCGCCCGCCCGCCCGAATAAACTCCCTGTCAGCAGCAT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS-3UTR CCA 90 bp AGTTTATTCGGGCGGGCGGGCGGGCGGGCGGAGCTGCTGAGACCTGCTGGCTGCGGGTTGGCCACTGTCTaGTTGATGTTGCCAGATAAC +
Preference number: 4 (lower is better)
Translates to: SLFGRAGGRAELLRPAGCGLATV*LMLPDN
Trigger: GTTATCTGGCAACATCAACCAGACAGTGGCCAACCC...GCAGCCAGCAGGTCTCAGCAGCTCCGCCCGCCCGCCCGCCCGCCCGAATAAACT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS-3UTR CCA 90 bp CTGCTGACAGGGAGTTTATTCGGGCGGGCGGGCGGGCGGGCGGAGCTGCTGAGAAGAACGAGAACGAGATaGCCTCCTTTAAGGTCACCT +
Preference number: 4 (lower is better)
Translates to: LLTGSLFGRAGGRAELLRRTRTR*PPLRSP
Trigger: AGGTGACCTTAAAGGAGGCCATCTCGTTCTCGTTCT...TCTCAGCAGCTCCGCCCGCCCGCCCGCCCGCCCGAATAAACTCCCTGTCAGCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS GCA 90 bp CGCGGTTCGGGAGGCGCACGGTGGCGTGGTACTCGCCCGCATCGGTaGGCAGAGCTGGGCGCAACCACAGAGAGAAGTCCCCGCGCTGGA +
Preference number: 5 (lower is better)
Translates to: RGSGGARWRGTRPHR*AELGATTERSPRAG
Trigger: TCCAGCGCGGGGACTTCTCTCTGTGGTTGCGCCCAGCTCTGCGCACCGATGCGGGCGAGTACCACGCCACCGTGCGCCTCCCGAACCGCG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS-3UTR CAA 90 bp TTCGGGCGGGCGGGCGGGCGGGCGGAGCTGCTGAGACCTGCTGGCTGCCTCGGCTCCAGGTTGGGGGATTaGAGGCTGCAGGGAAGATGG +
Preference number: 5 (lower is better)
Translates to: FGRAGGRAELLRPAGCLGSRLGD*RLQGRW
Trigger: CCATCTTCCCTGCAGCCTCAAATCCCCCAACCTGGA...GCCGAGGCAGCCAGCAGGTCTCAGCAGCTCCGCCCGCCCGCCCGCCCGCCCGAA
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS GCA 90 bp GCGCAGGCCTCCTGGAGCCACGCTCAGCACCGTGTAGCGACCGGGTaGGGGTTGTCTAGGCGAGGGCATCCCCTGGTGAAGGTCAAGGGC +
Preference number: 5 (lower is better)
Translates to: AQASWSHAQHRVATG*GLSRRGHPLVKVKG
Trigger: GCCCTTGACCTTCACCAGGGGATGCCCTCGCCTAGACAACCCGCACCCGGTCGCTACACGGTGCTGAGCGTGGCTCCAGGAGGCCTGCGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS-3UTR CAA 90 bp ATGCTGCTGACAGGGAGTTTATTCGGGCGGGCGGGCGGGCGGGCGGAGCTGCTGCCAGGAGGAGTCCACTaGGCAATGAGCAAAGAAGGG +
Preference number: 5 (lower is better)
Translates to: MLLTGSLFGRAGGRAELLPGGVH*AMSKEG
Trigger: CCCTTCTTTGCTCATTGCCAAGTGGACTCCTCCTGG...CAGCAGCTCCGCCCGCCCGCCCGCCCGCCCGAATAAACTCCCTGTCAGCAGCAT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS-3UTR CAA 90 bp CTGCTGACAGGGAGTTTATTCGGGCGGGCGGGCGGGCGGGCGGAGCTGCTGAGAAACGTGACAGTGGCATaGAGCTGCTGTCCCTGCAGA +
Preference number: 5 (lower is better)
Translates to: LLTGSLFGRAGGRAELLRNVTVA*SCCPCR
Trigger: TCTGCAGGGACAGCAGCTCAATGCCACTGTCACGTT...TCTCAGCAGCTCCGCCCGCCCGCCCGCCCGCCCGAATAAACTCCCTGTCAGCAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS-3UTR CAA 90 bp TTTATTCGGGCGGGCGGGCGGGCGGGCGGAGCTGCTGAGACCTGCTGGCTGCCTGGTAACCCGAAGGATTaGGGAGTCACTGTGATGACC +
Preference number: 5 (lower is better)
Translates to: FIRAGGRAGGAAETCWLPGNPKD*GVTVMT
Trigger: GGTCATCACAGTGACTCCCAAATCCTTCGGGTTACC...AGGCAGCCAGCAGGTCTCAGCAGCTCCGCCCGCCCGCCCGCCCGCCCGAATAAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS CCA 90 bp TTGGGGGATTTGAGGCTGCAGGGAAGATGGACGGGAGCTCCCTCCTaGGCCCACACCACGGGGAGCTCTTTCCCAGGCCCTGAAGACACA +
Preference number: 5 (lower is better)
Translates to: LGDLRLQGRWTGAPS*AHTTGSSFPGPEDT
Trigger: TGTGTCTTCAGGGCCTGGGAAAGAGCTCCCCGTGGTGTGGGCCCAGGAGGGAGCTCCCGTCCATCTTCCCTGCAGCCTCAAATCCCCCAA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS CCA 90 bp TCTGGCCCTCGTACAGCTGACACTGCCATCGCTCAGCAAGGAGCCTaGCCTCCTGAATCTCCAGCACAGGGCCCGGGCAACTCCTGGACA +
Preference number: 5 (lower is better)
Translates to: SGPRTADTAIAQQGA*PPESPAQGPGNSWT
Trigger: TGTCCAGGAGTTGCCCGGGCCCTGTGCTGGAGATTCAGGAGGCCAGGCTCCTTGCTGAGCGATGGCAGTGTCAGCTGTACGAGGGCCAGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS CCA 90 bp AGAAAGTTAGGATCCAGGTTGGGGGATTTGAGGCTGCAGGGAAGATaGACGGGAGCTCCCTCCTGGGCCCACACCACGGGGAGCTCTTTC +
Preference number: 5 (lower is better)
Translates to: RKLGSRLGDLRLQGR*TGAPSWAHTTGSSF
Trigger: GAAAGAGCTCCCCGTGGTGTGGGCCCAGGAGGGAGCTCCCGTCCATCTTCCCTGCAGCCTCAAATCCCCCAACCTGGATCCTAACTTTCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS TCA 90 bp GAAGGAGCAGTTCAAAAGGACCCAATCAGACAGCTTGAGGACTCCTaGGGGACTAGCAATCATCGAGGCCTGGCCGACGCGCAGGCGGAG +
Preference number: 5 (lower is better)
Translates to: EGAVQKDPIRQLEDS*GTSNHRGLADAQAE
Trigger: CTCCGCCTGCGCGTCGGCCAGGCCTCGATGATTGCTAGTCCCTCAGGAGTCCTCAAGCTGTCTGATTGGGTCCTTTTGAACTGCTCCTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS CCA 90 bp GTAGACAGGCACTCGGTTCTGGCCCTGGAACCAGTGCACAGAGACTaGGCGGTCAGGACGGCTGAAGGAGCAGTTCAAAAGGACCCAATC +
Preference number: 5 (lower is better)
Translates to: VDRHSVLALEPVHRD*AVRTAEGAVQKDPI
Trigger: GATTGGGTCCTTTTGAACTGCTCCTTCAGCCGTCCTGACCGCCCAGTCTCTGTGCACTGGTTCCAGGGCCAGAACCGAGTGCCTGTCTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS CCA 90 bp GGAGCCTGGCCTCCTGAATCTCCAGCACAGGGCCCGGGCAACTCCTaGACAGATTGTTCAGGGGACGCCACACAAATCTTTCCTTTCCAG +
Preference number: 5 (lower is better)
Translates to: GAWPPESPAQGPGNS*TDCSGDATQIFPFQ
Trigger: CTGGAAAGGAAAGATTTGTGTGGCGTCCCCTGAACAATCTGTCCAGGAGTTGCCCGGGCCCTGTGCTGGAGATTCAGGAGGCCAGGCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS GCA 90 bp CTGCTGTCCCTGCAGATGGATGCTACAGGTGTAGGTCCCAGCCTGTaGCAGACCCACAGCCTCAAGGTGAAGGGTAAAATTGCCACTCTT +
Preference number: 5 (lower is better)
Translates to: LLSLQMDATGVGPSL*QTHSLKVKGKIATL
Trigger: AAGAGTGGCAATTTTACCCTTCACCTTGAGGCTGTGGGTCTGGCACAGGCTGGGACCTACACCTGTAGCATCCATCTGCAGGGACAGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS CCA 90 bp AAAAGGAACAGGGAGAGGGCACCAAGGATGAGAACGAGAACGAGATaGCCTCCTTTAAGGTCACCTGAGATTCTCCTAGCACTGTGGGCG +
Preference number: 5 (lower is better)
Translates to: KRNRERAPRMRTRTR*PPLRSPEILLALWA
Trigger: CGCCCACAGTGCTAGGAGAATCTCAGGTGACCTTAAAGGAGGCCATCTCGTTCTCGTTCTCATCCTTGGTGCCCTCTCCCTGTTCCTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS GCA 72 bp CAATCATCGAGGCCTGGCCGACGCGCAGGCGGAGACTaGAGGAGAGGGCGCGGTTCGGGAGGCGCACGGTGG +
Preference number: 6 (lower is better)
Translates to: QSSRPGRRAGGD*RRGRGSGGARW
Trigger: CCACCGTGCGCCTCCCGAACCGCGCCCTCTCCTGCAGTCTCCGCCTGCGCGTCGGCCAGGCCTCGATGATTG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS CCA 72 bp AGAGCTGGGCGCAACCACAGAGAGAAGTCCCCGCGCTaGAGGCCGCGCTCCTCCAGCTGCACGTGGGGATGC +
Preference number: 6 (lower is better)
Translates to: RAGRNHREKSPR*RPRSSSCTWGC
Trigger: GCATCCCCACGTGCAGCTGGAGGAGCGCGGCCTCCAGCGCGGGGACTTCTCTCTGTGGTTGCGCCCAGCTCT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS CAA 90 bp GCCTCCTGGAGCCACGCTCAGCACCGTGTAGCGACCGGGTGCGGGTaGTCTAGGCGAGGGCATCCCCTGGTGAAGGTCAAGGGCCGGGAT +
Preference number: 6 (lower is better)
Translates to: ASWSHAQHRVATGCG*SRRGHPLVKVKGRD
Trigger: ATCCCGGCCCTTGACCTTCACCAGGGGATGCCCTCGCCTAGACAACCCGCACCCGGTCGCTACACGGTGCTGAGCGTGGCTCCAGGAGGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS GCA 72 bp TCCTGGAGCCACGCTCAGCACCGTGTAGCGACCGGGTaGGGGTTGTCTAGGCGAGGGCATCCCCTGGTGAAG +
Preference number: 6 (lower is better)
Translates to: SWSHAQHRVATG*GLSRRGHPLVK
Trigger: CTTCACCAGGGGATGCCCTCGCCTAGACAACCCGCACCCGGTCGCTACACGGTGCTGAGCGTGGCTCCAGGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS CCA 72 bp TTGAGGCTGCAGGGAAGATGGACGGGAGCTCCCTCCTaGGCCCACACCACGGGGAGCTCTTTCCCAGGCCCT +
Preference number: 6 (lower is better)
Translates to: LRLQGRWTGAPS*AHTTGSSFPGP
Trigger: AGGGCCTGGGAAAGAGCTCCCCGTGGTGTGGGCCCAGGAGGGAGCTCCCGTCCATCTTCCCTGCAGCCTCAA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS CAA 72 bp AGCCACGCTCAGCACCGTGTAGCGACCGGGTGCGGGTaGTCTAGGCGAGGGCATCCCCTGGTGAAGGTCAAG +
Preference number: 6 (lower is better)
Translates to: SHAQHRVATGCG*SRRGHPLVKVK
Trigger: CTTGACCTTCACCAGGGGATGCCCTCGCCTAGACAACCCGCACCCGGTCGCTACACGGTGCTGAGCGTGGCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS CCA 72 bp GCGAGGGCATCCCCTGGTGAAGGTCAAGGGCCGGGATaGGAGTGGGTTGGCCACTGTCTGGTTGATGTTGCC +
Preference number: 6 (lower is better)
Translates to: ARASPGEGQGPG*EWVGHCLVDVA
Trigger: GGCAACATCAACCAGACAGTGGCCAACCCACTCCCATCCCGGCCCTTGACCTTCACCAGGGGATGCCCTCGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS CCA 72 bp CGTACAGCTGACACTGCCATCGCTCAGCAAGGAGCCTaGCCTCCTGAATCTCCAGCACAGGGCCCGGGCAAC +
Preference number: 6 (lower is better)
Translates to: RTADTAIAQQGA*PPESPAQGPGN
Trigger: GTTGCCCGGGCCCTGTGCTGGAGATTCAGGAGGCCAGGCTCCTTGCTGAGCGATGGCAGTGTCAGCTGTACG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS TCA 72 bp ACTGTCGCTCCAAGAAGCCTCTGGCCCTCGTACAGCTaGCACTGCCATCGCTCAGCAAGGAGCCTGGCCTCC +
Preference number: 6 (lower is better)
Translates to: TVAPRSLWPSYS*HCHRSARSLAS
Trigger: GGAGGCCAGGCTCCTTGCTGAGCGATGGCAGTGTCAGCTGTACGAGGGCCAGAGGCTTCTTGGAGCGACAGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS CCA 72 bp CACTCGGTTCTGGCCCTGGAACCAGTGCACAGAGACTaGGCGGTCAGGACGGCTGAAGGAGCAGTTCAAAAG +
Preference number: 6 (lower is better)
Translates to: HSVLALEPVHRD*AVRTAEGAVQK
Trigger: CTTTTGAACTGCTCCTTCAGCCGTCCTGACCGCCCAGTCTCTGTGCACTGGTTCCAGGGCCAGAACCGAGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS CAA 90 bp ATAACCCCTCCTCTTCGTAGAAAGTTAGGATCCAGGTTGGGGGATTaGAGGCTGCAGGGAAGATGGACGGGAGCTCCCTCCTGGGCCCAC +
Preference number: 6 (lower is better)
Translates to: ITPPLRRKLGSRLGD*RLQGRWTGAPSWAH
Trigger: GTGGGCCCAGGAGGGAGCTCCCGTCCATCTTCCCTGCAGCCTCAAATCCCCCAACCTGGATCCTAACTTTCTACGAAGAGGAGGGGTTAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS CAA 72 bp AACAGCTTCCCCCGGGAGCCAGGTAACCCGAAGGATTaGGGAGTCACTGTGATGACCGCCAACGTGACAGTG +
Preference number: 6 (lower is better)
Translates to: NSFPREPGNPKD*GVTVMTANVTV
Trigger: CACTGTCACGTTGGCGGTCATCACAGTGACTCCCAAATCCTTCGGGTTACCTGGCTCCCGGGGGAAGCTGTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS CAA 90 bp TCAGGACGGCTGAAGGAGCAGTTCAAAAGGACCCAATCAGACAGCTaGAGGACTCCTGAGGGACTAGCAATCATCGAGGCCTGGCCGACG +
Preference number: 6 (lower is better)
Translates to: SGRLKEQFKRTQSDS*RTPEGLAIIEAWPT
Trigger: CGTCGGCCAGGCCTCGATGATTGCTAGTCCCTCAGGAGTCCTCAAGCTGTCTGATTGGGTCCTTTTGAACTGCTCCTTCAGCCGTCCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS TCA 72 bp GGAACCAGTGCACAGAGACTGGGCGGTCAGGACGGCTaGAGGAGCAGTTCAAAAGGACCCAATCAGACAGCT +
Preference number: 6 (lower is better)
Translates to: GTSAQRLGGQDG*RSSSKGPNQTA
Trigger: AGCTGTCTGATTGGGTCCTTTTGAACTGCTCCTTCAGCCGTCCTGACCGCCCAGTCTCTGTGCACTGGTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS CCA 72 bp CCTCCTGAATCTCCAGCACAGGGCCCGGGCAACTCCTaGACAGATTGTTCAGGGGACGCCACACAAATCTTT +
Preference number: 6 (lower is better)
Translates to: PPESPAQGPGNS*TDCSGDATQIF
Trigger: AAAGATTTGTGTGGCGTCCCCTGAACAATCTGTCCAGGAGTTGCCCGGGCCCTGTGCTGGAGATTCAGGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS CCA 72 bp CCTCCTTTAAGGTCACCTGAGATTCTCCTAGCACTGTaGGCGCCTGAGCTAGACTCTGCGGCGTACACTGTC +
Preference number: 6 (lower is better)
Translates to: PPLRSPEILLAL*APELDSAAYTV
Trigger: GACAGTGTACGCCGCAGAGTCTAGCTCAGGCGCCCACAGTGCTAGGAGAATCTCAGGTGACCTTAAAGGAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS CAA 90 bp TGTTGCCAGATAACCCCTCCTCTTCGTAGAAAGTTAGGATCCAGGTaGGGGGATTTGAGGCTGCAGGGAAGATGGACGGGAGCTCCCTCC +
Preference number: 6 (lower is better)
Translates to: CCQITPPLRRKLGSR*GDLRLQGRWTGAPS
Trigger: GGAGGGAGCTCCCGTCCATCTTCCCTGCAGCCTCAAATCCCCCAACCTGGATCCTAACTTTCTACGAAGAGGAGGGGTTATCTGGCAACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS CAA 72 bp ATCTCCAGCACAGGGCCCGGGCAACTCCTGGACAGATaGTTCAGGGGACGCCACACAAATCTTTCCTTTCCA +
Preference number: 6 (lower is better)
Translates to: ISSTGPGQLLDR*FRGRHTNLSFP
Trigger: TGGAAAGGAAAGATTTGTGTGGCGTCCCCTGAACAATCTGTCCAGGAGTTGCCCGGGCCCTGTGCTGGAGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS GCA 72 bp CTGCAGATGGATGCTACAGGTGTAGGTCCCAGCCTGTaGCAGACCCACAGCCTCAAGGTGAAGGGTAAAATT +
Preference number: 6 (lower is better)
Translates to: LQMDATGVGPSL*QTHSLKVKGKI
Trigger: AATTTTACCCTTCACCTTGAGGCTGTGGGTCTGGCACAGGCTGGGACCTACACCTGTAGCATCCATCTGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS CAA 72 bp ACTGTCAGAGGGGCTACGGGCTCCAGACCCAGAACCTaGAGGTTGTACGTGATGGAGACATTGAAGCCATCT +
Preference number: 6 (lower is better)
Translates to: TVRGATGSRPRT*RLYVMETLKPS
Trigger: AGATGGCTTCAATGTCTCCATCACGTACAACCTCAAGGTTCTGGGTCTGGAGCCCGTAGCCCCTCTGACAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS CCA 72 bp AGGGAGAGGGCACCAAGGATGAGAACGAGAACGAGATaGCCTCCTTTAAGGTCACCTGAGATTCTCCTAGCA +
Preference number: 6 (lower is better)
Translates to: RERAPRMRTRTR*PPLRSPEILLA
Trigger: TGCTAGGAGAATCTCAGGTGACCTTAAAGGAGGCCATCTCGTTCTCGTTCTCATCCTTGGTGCCCTCTCCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2
CDS CAA 72 bp CTGAAGGAGCAGTTCAAAAGGACCCAATCAGACAGCTaGAGGACTCCTGAGGGACTAGCAATCATCGAGGCC +
Preference number: 6 (lower is better)
Translates to: LKEQFKRTQSDS*RTPEGLAIIEA
Trigger: GGCCTCGATGATTGCTAGTCCCTCAGGAGTCCTCAAGCTGTCTGATTGGGTCCTTTTGAACTGCTCCTTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032217.2