Pregenerated sensors for LACC1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000044350Ensembl transcript IDs: ENSMUST00000062789.15, ENSMUST00000142300.2
Found 69 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | ACTTCATTTCAATTCCCTGTGCTGGGCTCCATGCCTAAACAAAAGTTGGCATCTCTTTTGCAGCCAGTGTaGAAGGATGCAGGAAACATC | + |
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Preference number: 2 (lower is better) Translates to: TSFQFPVLGSMPKQKLASLLQPV*KDAGNI Trigger: GATGTTTCCTGCATCCTTCCACACTGGCTGCAAAAG...AGATGCCAACTTTTGTTTAGGCATGGAGCCCAGCACAGGGAATTGAAATGAAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| 3UTR-3UTR TCA 90 bp | GGAAGGATCAGCAAAAACATGGCGCTTGAGAATGCCATAAGGAAACCTAAGGGATACCAAATACTTAACTaGACAGCCCTGGCCTTGATT | + |
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Preference number: 2 (lower is better) Translates to: GRISKNMALENAIRKPKGYQILN*TALALI Trigger: AATCAAGGCCAGGGCTGTTCAGTTAAGTATTTGGTA...TCCCTTAGGTTTCCTTATGGCATTCTCAAGCGCCATGTTTTTGCTGATCCTTCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| 3UTR-3UTR CCA 90 bp | GGAAGGATCAGCAAAAACATGGCGCTTGAGAATGCCATAAGGAAACCTAAGGGATTAGACCAAGATCACTaGGCTTTGGGTAACAGTAAG | + |
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Preference number: 2 (lower is better) Translates to: GRISKNMALENAIRKPKGLDQDH*ALGNSK Trigger: CTTACTGTTACCCAAAGCCCAGTGATCTTGGTCTAA...TCCCTTAGGTTTCCTTATGGCATTCTCAAGCGCCATGTTTTTGCTGATCCTTCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| 3UTR-3UTR TCA 90 bp | ATCAGCAAAAACATGGCGCTTGAGAATGCCATAAGGAAACCTAAGGGAACAGGTGAACAGCCCTGGCCTTaGTTTATAGACAAATACAGA | + |
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Preference number: 2 (lower is better) Translates to: ISKNMALENAIRKPKGTGEQPWP*FIDKYR Trigger: TCTGTATTTGTCTATAAATCAAGGCCAGGGCTGTTC...ACCTGTTCCCTTAGGTTTCCTTATGGCATTCTCAAGCGCCATGTTTTTGCTGAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| 3UTR-3UTR GCA 90 bp | TCATTTCAATTCCCTGTGCTGGGCTCCATGCCTAAACAAAAGTTGGCATCTACCAGGAAACATCCTTTATaGAAAACTCCAGCCAAGAAC | + |
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Preference number: 2 (lower is better) Translates to: SFQFPVLGSMPKQKLASTRKHPL*KTPAKN Trigger: GTTCTTGGCTGGAGTTTTGCATAAAGGATGTTTCCT...GGTAGATGCCAACTTTTGTTTAGGCATGGAGCCCAGCACAGGGAATTGAAATGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| 3UTR-3UTR CCA 90 bp | ACAGCCCTGGCCTTGATTTATAGACAAATACAGAGAACGACCTTCAGGAATGACAAGATCACTGGGCTTTaGGTAACAGTAAGAGCATAC | + |
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Preference number: 2 (lower is better) Translates to: TALALIYRQIQRTTFRNDKITGL*VTVRAY Trigger: GTATGCTCTTACTGTTACCCAAAGCCCAGTGATCTT...GTCATTCCTGAAGGTCGTTCTCTGTATTTGTCTATAAATCAAGGCCAGGGCTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| 3UTR-3UTR GCA 90 bp | ATCAGCAAAAACATGGCGCTTGAGAATGCCATAAGGAAACCTAAGGGAACAGGTCTAAGTATTTTCTTTTaGAGCCAGTGTGGAAGGATG | + |
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Preference number: 2 (lower is better) Translates to: ISKNMALENAIRKPKGTGLSIFF*SQCGRM Trigger: CATCCTTCCACACTGGCTGCAAAAGAAAATACTTAG...ACCTGTTCCCTTAGGTTTCCTTATGGCATTCTCAAGCGCCATGTTTTTGCTGAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS-3UTR CCA 90 bp | GAGAATGCCATAAGGAAACCTAAGGGAACAGGTATCTCCCAGCTGCATCTGCTTGATCTGCGAAGACGATaGGTATACAGTCGGCGCCAA | + |
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Preference number: 4 (lower is better) Translates to: ENAIRKPKGTGISQLHLLDLRRR*VYSRRQ Trigger: TTGGCGCCGACTGTATACCCATCGTCTTCGCAGATC...AAGCAGATGCAGCTGGGAGATACCTGTTCCCTTAGGTTTCCTTATGGCATTCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS-3UTR TCA 90 bp | GAGAATGCCATAAGGAAACCTAAGGGAACAGGTATCTCCCAGCTGCATCTGCTTATTGTGACTCCTCTCTaGTTTGTGACGATCCCATCG | + |
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Preference number: 4 (lower is better) Translates to: ENAIRKPKGTGISQLHLLIVTPL*FVTIPS Trigger: CGATGGGATCGTCACAAATCAGAGAGGAGTCACAAT...AAGCAGATGCAGCTGGGAGATACCTGTTCCCTTAGGTTTCCTTATGGCATTCTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS-3UTR TCA 90 bp | GAGAATGCCATAAGGAAACCTAAGGGAACAGGTATCTCCCAGCTGCATCTGCTTATTCTTTGGGAAGAGTaGAGCAGCAAGAACCCACTG | + |
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Preference number: 4 (lower is better) Translates to: ENAIRKPKGTGISQLHLLILWEE*SSKNPL Trigger: CAGTGGGTTCTTGCTGCTTCACTCTTCCCAAAGAAT...AAGCAGATGCAGCTGGGAGATACCTGTTCCCTTAGGTTTCCTTATGGCATTCTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS-3UTR GCA 90 bp | ACTTCATTTCAATTCCCTGTGCTGGGCTCCATGCCTAAACAAAAGTTGGCATCTCAGGATGGCAGGACGTaGAGAGGTCAAGATCTTCCT | + |
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Preference number: 4 (lower is better) Translates to: TSFQFPVLGSMPKQKLASQDGRT*RGQDLP Trigger: AGGAAGATCTTGACCTCTGCACGTCCTGCCATCCTG...AGATGCCAACTTTTGTTTAGGCATGGAGCCCAGCACAGGGAATTGAAATGAAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS-3UTR CCA 90 bp | TCATTTCAATTCCCTGTGCTGGGCTCCATGCCTAAACAAAAGTTGGCATCTACCAAAGGAACTTGGCCTTaGGAGCGTGGTGGTAGTGAA | + |
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Preference number: 4 (lower is better) Translates to: SFQFPVLGSMPKQKLASTKGTWP*ERGGSE Trigger: TTCACTACCACCACGCTCCCAAGGCCAAGTTCCTTT...GGTAGATGCCAACTTTTGTTTAGGCATGGAGCCCAGCACAGGGAATTGAAATGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS-3UTR TCA 90 bp | GAGAATGCCATAAGGAAACCTAAGGGAACAGGTATCTCCCAGCTGCATCTGCTTCTCCTCTCTGATTTGTaGCGATCCCATCGTAAGATT | + |
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Preference number: 4 (lower is better) Translates to: ENAIRKPKGTGISQLHLLLLSDL*RSHRKI Trigger: AATCTTACGATGGGATCGTCACAAATCAGAGAGGAG...AAGCAGATGCAGCTGGGAGATACCTGTTCCCTTAGGTTTCCTTATGGCATTCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS-3UTR TCA 90 bp | TATCTCCCAGCTGCATCTGCTTCAAATGAGAAAGCTGACTTCATTTCAATTCCCTTTTCCCGCGAGACGTaGAAAGCCATTTCCTGCTTC | + |
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Preference number: 4 (lower is better) Translates to: YLPAASASNEKADFISIPFSRET*KAISCF Trigger: GAAGCAGGAAATGGCTTTTCACGTCTCGCGGGAAAA...GGGAATTGAAATGAAGTCAGCTTTCTCATTTGAAGCAGATGCAGCTGGGAGATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS-3UTR TCA 90 bp | GAGAATGCCATAAGGAAACCTAAGGGAACAGGTATCTCCCAGCTGCATCTGCTTCTGCGAACATTTTCTTaGACAACCACTTTGGGATCT | + |
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Preference number: 4 (lower is better) Translates to: ENAIRKPKGTGISQLHLLLRTFS*TTTLGS Trigger: AGATCCCAAAGTGGTTGTTCAAGAAAATGTTCGCAG...AAGCAGATGCAGCTGGGAGATACCTGTTCCCTTAGGTTTCCTTATGGCATTCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS-3UTR GCA 90 bp | GGTATCTCCCAGCTGCATCTGCTTCAAATGAGAAAGCTGACTTCATTTCAATTCGTGAGCAACCCCACATaGCTTTTTCACAGGATCTGC | + |
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Preference number: 4 (lower is better) Translates to: GISQLHLLQMRKLTSFQFVSNPT*LFHRIC Trigger: GCAGATCCTGTGAAAAAGGCATGTGGGGTTGCTCAC...GAATTGAAATGAAGTCAGCTTTCTCATTTGAAGCAGATGCAGCTGGGAGATACC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS-3UTR CCA 90 bp | GCCAGTGTGGAAGGATGCAGGAAACATCCTTTATGCAAAACTCCAGCCAAGAACTCCAGTAAGGTCTCATaGCAGTTTTTCTGTGCATTC | + |
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Preference number: 4 (lower is better) Translates to: ASVEGCRKHPLCKTPAKNSSKVS*QFFCAF Trigger: GAATGCACAGAAAAACTGCCATGAGACCTTACTGGA...GTTCTTGGCTGGAGTTTTGCATAAAGGATGTTTCCTGCATCCTTCCACACTGGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS-3UTR CCA 90 bp | GCTTCAAATGAGAAAGCTGACTTCATTTCAATTCCCTGTGCTGGGCTCCATGCCCTTGAACAACCACTTTaGGATCTCTCCTTTTGGAAC | + |
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Preference number: 4 (lower is better) Translates to: ASNEKADFISIPCAGLHALEQPL*DLSFWN Trigger: GTTCCAAAAGGAGAGATCCCAAAGTGGTTGTTCAAG...GGCATGGAGCCCAGCACAGGGAATTGAAATGAAGTCAGCTTTCTCATTTGAAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS-3UTR CCA 90 bp | ACAGCCCTGGCCTTGATTTATAGACAAATACAGAGAACGACCTTCAGGAATGACAAAAACTTCTCAGGATaGCAGGACGTGCAGAGGTCA | + |
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Preference number: 4 (lower is better) Translates to: TALALIYRQIQRTTFRNDKNFSG*QDVQRS Trigger: TGACCTCTGCACGTCCTGCCATCCTGAGAAGTTTTT...GTCATTCCTGAAGGTCGTTCTCTGTATTTGTCTATAAATCAAGGCCAGGGCTGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS-3UTR CCA 90 bp | GGTATCTCCCAGCTGCATCTGCTTCAAATGAGAAAGCTGACTTCATTTCAATTCAGGCCATCGCGGACATaGGAGAAAAACTTCTCAGGA | + |
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Preference number: 4 (lower is better) Translates to: GISQLHLLQMRKLTSFQFRPSRT*EKNFSG Trigger: TCCTGAGAAGTTTTTCTCCCATGTCCGCGATGGCCT...GAATTGAAATGAAGTCAGCTTTCTCATTTGAAGCAGATGCAGCTGGGAGATACC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS-3UTR TCA 90 bp | GAGAATGCCATAAGGAAACCTAAGGGAACAGGTATCTCCCAGCTGCATCTGCTTTCTTCCTTCTGGTCTTaGATGTTCTGTGGAAGAATT | + |
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Preference number: 4 (lower is better) Translates to: ENAIRKPKGTGISQLHLLSSFWS*MFCGRI Trigger: AATTCTTCCACAGAACATTCAAGACCAGAAGGAAGA...AAGCAGATGCAGCTGGGAGATACCTGTTCCCTTAGGTTTCCTTATGGCATTCTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS-3UTR GCA 90 bp | GAGAATGCCATAAGGAAACCTAAGGGAACAGGTATCTCCCAGCTGCATCTGCTTCCTTGCTGGCATTTCTaGAACATATTATGCAAAGGA | + |
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Preference number: 4 (lower is better) Translates to: ENAIRKPKGTGISQLHLLPCWHF*NILCKG Trigger: TCCTTTGCATAATATGTTGCAGAAATGCCAGCAAGG...AAGCAGATGCAGCTGGGAGATACCTGTTCCCTTAGGTTTCCTTATGGCATTCTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS-3UTR GCA 90 bp | ACAGCCCTGGCCTTGATTTATAGACAAATACAGAGAACGACCTTCAGGAATGACCCCCATCCTTTTCCTTaGTGGCATTTCTGCAACATA | + |
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Preference number: 4 (lower is better) Translates to: TALALIYRQIQRTTFRNDPHPFP*WHFCNI Trigger: TATGTTGCAGAAATGCCAGCAAGGAAAAGGATGGGG...GTCATTCCTGAAGGTCGTTCTCTGTATTTGTCTATAAATCAAGGCCAGGGCTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS-3UTR CCA 90 bp | TCATTTCAATTCCCTGTGCTGGGCTCCATGCCTAAACAAAAGTTGGCATCTACCCTAGTTCTTGAGTTGTaGTCACGTTTATTCCAGTGG | + |
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Preference number: 4 (lower is better) Translates to: SFQFPVLGSMPKQKLASTLVLEL*SRLFQW Trigger: CCACTGGAATAAACGTGACCACAACTCAAGAACTAG...GGTAGATGCCAACTTTTGTTTAGGCATGGAGCCCAGCACAGGGAATTGAAATGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS-3UTR CCA 90 bp | ACAGCCCTGGCCTTGATTTATAGACAAATACAGAGAACGACCTTCAGGAATGACCTAGAAGAATCCTGGTaGCTTTTCGGATGTCAACGT | + |
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Preference number: 4 (lower is better) Translates to: TALALIYRQIQRTTFRNDLEESW*LFGCQR Trigger: ACGTTGACATCCGAAAAGCCACCAGGATTCTTCTAG...GTCATTCCTGAAGGTCGTTCTCTGTATTTGTCTATAAATCAAGGCCAGGGCTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS-3UTR TCA 90 bp | TCATTTCAATTCCCTGTGCTGGGCTCCATGCCTAAACAAAAGTTGGCATCTACCAAAGTGTCTCACACATaGAGGATGAAGACTGTGAAA | + |
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Preference number: 4 (lower is better) Translates to: SFQFPVLGSMPKQKLASTKVSHT*RMKTVK Trigger: TTTCACAGTCTTCATCCTTCATGTGTGAGACACTTT...GGTAGATGCCAACTTTTGTTTAGGCATGGAGCCCAGCACAGGGAATTGAAATGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS-3UTR CCA 90 bp | TCATTTCAATTCCCTGTGCTGGGCTCCATGCCTAAACAAAAGTTGGCATCTACCGTTTATTCCAGTGGATaGTTTCAAAAGGCTATCCCT | + |
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Preference number: 4 (lower is better) Translates to: SFQFPVLGSMPKQKLASTVYSSG*FQKAIP Trigger: AGGGATAGCCTTTTGAAACCATCCACTGGAATAAAC...GGTAGATGCCAACTTTTGTTTAGGCATGGAGCCCAGCACAGGGAATTGAAATGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS-3UTR TCA 90 bp | GGAAGGATCAGCAAAAACATGGCGCTTGAGAATGCCATAAGGAAACCTAAGGGAATGTCTTCTAGTTCTTaGGTTGTGGTCACGTTTATT | + |
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Preference number: 4 (lower is better) Translates to: GRISKNMALENAIRKPKGMSSSS*VVVTFI Trigger: AATAAACGTGACCACAACTCAAGAACTAGAAGACAT...TCCCTTAGGTTTCCTTATGGCATTCTCAAGCGCCATGTTTTTGCTGATCCTTCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS-3UTR GCA 90 bp | ATCAGCAAAAACATGGCGCTTGAGAATGCCATAAGGAAACCTAAGGGAACAGGTTTCTGCAACATATTATaGAAAGGAACTTGGCCTTGG | + |
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Preference number: 4 (lower is better) Translates to: ISKNMALENAIRKPKGTGFCNIL*KGTWPW Trigger: CCAAGGCCAAGTTCCTTTGCATAATATGTTGCAGAA...ACCTGTTCCCTTAGGTTTCCTTATGGCATTCTCAAGCGCCATGTTTTTGCTGAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS-3UTR GCA 90 bp | ATCAGCAAAAACATGGCGCTTGAGAATGCCATAAGGAAACCTAAGGGAACAGGTCAGCATTTGCCAACCTaGGAACATTTTCTTGAACAA | + |
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Preference number: 4 (lower is better) Translates to: ISKNMALENAIRKPKGTGQHLPT*EHFLEQ Trigger: TTGTTCAAGAAAATGTTCGCAGGTTGGCAAATGCTG...ACCTGTTCCCTTAGGTTTCCTTATGGCATTCTCAAGCGCCATGTTTTTGCTGAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS-3UTR CCA 90 bp | GGAAGGATCAGCAAAAACATGGCGCTTGAGAATGCCATAAGGAAACCTAAGGGACATCCTTTTCCTTGCTaGCATTTCTGCAACATATTA | + |
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Preference number: 4 (lower is better) Translates to: GRISKNMALENAIRKPKGHPFPC*HFCNIL Trigger: TAATATGTTGCAGAAATGCCAGCAAGGAAAAGGATG...TCCCTTAGGTTTCCTTATGGCATTCTCAAGCGCCATGTTTTTGCTGATCCTTCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS-3UTR CCA 90 bp | ACAGCCCTGGCCTTGATTTATAGACAAATACAGAGAACGACCTTCAGGAATGACTTTCTAGAAGAATCCTaGTGGCTTTTCGGATGTCAA | + |
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Preference number: 4 (lower is better) Translates to: TALALIYRQIQRTTFRNDFLEES*WLFGCQ Trigger: TTGACATCCGAAAAGCCACCAGGATTCTTCTAGAAA...GTCATTCCTGAAGGTCGTTCTCTGTATTTGTCTATAAATCAAGGCCAGGGCTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS-3UTR CCA 90 bp | ATCAGCAAAAACATGGCGCTTGAGAATGCCATAAGGAAACCTAAGGGAACAGGTGTCTTGAATGTTCTGTaGAAGAATTCCTCCTCTTTC | + |
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Preference number: 4 (lower is better) Translates to: ISKNMALENAIRKPKGTGVLNVL*KNSSSF Trigger: GAAAGAGGAGGAATTCTTCCACAGAACATTCAAGAC...ACCTGTTCCCTTAGGTTTCCTTATGGCATTCTCAAGCGCCATGTTTTTGCTGAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS-3UTR GCA 90 bp | TATCTCCCAGCTGCATCTGCTTCAAATGAGAAAGCTGACTTCATTTCAATTCCCTCGGTAAAATTTCTCTaGGTTAAATCCGGCAGCATT | + |
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Preference number: 4 (lower is better) Translates to: YLPAASASNEKADFISIPSVKFL*VKSGSI Trigger: AATGCTGCCGGATTTAACGCAGAGAAATTTTACCGA...GGGAATTGAAATGAAGTCAGCTTTCTCATTTGAAGCAGATGCAGCTGGGAGATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS-3UTR GCA 90 bp | GGTATCTCCCAGCTGCATCTGCTTCAAATGAGAAAGCTGACTTCATTTCAATTCATCACAGCCATATTCTaGTATCATAGCATTCACAGT | + |
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Preference number: 4 (lower is better) Translates to: GISQLHLLQMRKLTSFQFITAIF*YHSIHS Trigger: ACTGTGAATGCTATGATAGCAGAATATGGCTGTGAT...GAATTGAAATGAAGTCAGCTTTCTCATTTGAAGCAGATGCAGCTGGGAGATACC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS GCA 90 bp | TTTCCAGCCGGAGTGAGCAACCCCACATGCCTTTTTCACAGGATCTaGGAAGACGATGGGTATACAGTCGGCGCCAAGAGCAGTGATTGT | + |
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Preference number: 5 (lower is better) Translates to: FPAGVSNPTCLFHRI*EDDGYTVGAKSSDC Trigger: ACAATCACTGCTCTTGGCGCCGACTGTATACCCATCGTCTTCGCAGATCCTGTGAAAAAGGCATGTGGGGTTGCTCACTCCGGCTGGAAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS GCA 90 bp | CACACCCAACAATGTACCTTTCCAGCCGGAGTGAGCAACCCCACATaGCTTTTTCACAGGATCTGCGAAGACGATGGGTATACAGTCGGC | + |
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Preference number: 5 (lower is better) Translates to: HTQQCTFPAGVSNPT*LFHRICEDDGYTVG Trigger: GCCGACTGTATACCCATCGTCTTCGCAGATCCTGTGAAAAAGGCATGTGGGGTTGCTCACTCCGGCTGGAAAGGTACATTGTTGGGTGTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS GCA 90 bp | GGCCATCGCGGACATGGGAGAAAAACTTCTCAGGATGGCAGGACGTaGAGAGGTCAAGATCTTCCTTCTGGTCTTGAATGTTCTGTGGAA | + |
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Preference number: 5 (lower is better) Translates to: GHRGHGRKTSQDGRT*RGQDLPSGLECSVE Trigger: TTCCACAGAACATTCAAGACCAGAAGGAAGATCTTGACCTCTGCACGTCCTGCCATCCTGAGAAGTTTTTCTCCCATGTCCGCGATGGCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS CCA 90 bp | GATATGAAGCCAATCTGTGTACCGAAGTTAAGGCCATCGCGGACATaGGAGAAAAACTTCTCAGGATGGCAGGACGTGCAGAGGTCAAGA | + |
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Preference number: 5 (lower is better) Translates to: DMKPICVPKLRPSRT*EKNFSGWQDVQRSR Trigger: TCTTGACCTCTGCACGTCCTGCCATCCTGAGAAGTTTTTCTCCCATGTCCGCGATGGCCTTAACTTCGGTACACAGATTGGCTTCATATC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS GCA 90 bp | ATTCACAGAGGCCATACTCCCCATCCTTTTCCTTGCTGGCATTTCTaGAACATATTATGCAAAGGAACTTGGCCTTGGGAGCGTGGTGGT | + |
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Preference number: 5 (lower is better) Translates to: IHRGHTPHPFPCWHF*NILCKGTWPWERGG Trigger: ACCACCACGCTCCCAAGGCCAAGTTCCTTTGCATAATATGTTGCAGAAATGCCAGCAAGGAAAAGGATGGGGAGTATGGCCTCTGTGAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000062789.15 ENSMUST00000142300.2 |
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| CDS CCA 90 bp | CCTTTTCCTTGCTGGCATTTCTGCAACATATTATGCAAAGGAACTTaGCCTTGGGAGCGTGGTGGTAGTGAATACCATCCAGTGTCTCCA | + |
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Preference number: 5 (lower is better) Translates to: PFPCWHFCNILCKGT*PWERGGSEYHPVSP Trigger: TGGAGACACTGGATGGTATTCACTACCACCACGCTCCCAAGGCCAAGTTCCTTTGCATAATATGTTGCAGAAATGCCAGCAAGGAAAAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062789.15 ENSMUST00000142300.2 |
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| CDS-3UTR CAA 90 bp | GAGAATGCCATAAGGAAACCTAAGGGAACAGGTATCTCCCAGCTGCATCTGCTTTCCCCATCCTTTTCCTaGCTGGCATTTCTGCAACAT | + |
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Preference number: 5 (lower is better) Translates to: ENAIRKPKGTGISQLHLLSPSFS*LAFLQH Trigger: ATGTTGCAGAAATGCCAGCAAGGAAAAGGATGGGGA...AAGCAGATGCAGCTGGGAGATACCTGTTCCCTTAGGTTTCCTTATGGCATTCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS-3UTR CAA 90 bp | GAGAATGCCATAAGGAAACCTAAGGGAACAGGTATCTCCCAGCTGCATCTGCTTGAACTACTGAAAAGATaGAGGGAGCTGAGAGTGGGT | + |
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Preference number: 5 (lower is better) Translates to: ENAIRKPKGTGISQLHLLELLKR*RELRVG Trigger: ACCCACTCTCAGCTCCCTCAATCTTTTCAGTAGTTC...AAGCAGATGCAGCTGGGAGATACCTGTTCCCTTAGGTTTCCTTATGGCATTCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS-3UTR CAA 90 bp | GCTTCAAATGAGAAAGCTGACTTCATTTCAATTCCCTGTGCTGGGCTCCATGCCGAGACTGCTGATTCTTaGGGAAGAGTGAAGCAGCAA | + |
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Preference number: 5 (lower is better) Translates to: ASNEKADFISIPCAGLHAETADS*GRVKQQ Trigger: TTGCTGCTTCACTCTTCCCAAAGAATCAGCAGTCTC...GGCATGGAGCCCAGCACAGGGAATTGAAATGAAGTCAGCTTTCTCATTTGAAGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS TCA 90 bp | TCAGGATGGCAGGACGTGCAGAGGTCAAGATCTTCCTTCTGGTCTTaGATGTTCTGTGGAAGAATTCCTCCTCTTTCTAGAAGAATCCTG | + |
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Preference number: 5 (lower is better) Translates to: SGWQDVQRSRSSFWS*MFCGRIPPLSRRIL Trigger: CAGGATTCTTCTAGAAAGAGGAGGAATTCTTCCACAGAACATTCAAGACCAGAAGGAAGATCTTGACCTCTGCACGTCCTGCCATCCTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS GCA 90 bp | CATACTCCCCATCCTTTTCCTTGCTGGCATTTCTGCAACATATTATaGAAAGGAACTTGGCCTTGGGAGCGTGGTGGTAGTGAATACCAT | + |
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Preference number: 5 (lower is better) Translates to: HTPHPFPCWHFCNIL*KGTWPWERGGSEYH Trigger: ATGGTATTCACTACCACCACGCTCCCAAGGCCAAGTTCCTTTGCATAATATGTTGCAGAAATGCCAGCAAGGAAAAGGATGGGGAGTATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000062789.15 ENSMUST00000142300.2 |
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| CDS CCA 90 bp | GAATGTTCTGTGGAAGAATTCCTCCTCTTTCTAGAAGAATCCTGGTaGCTTTTCGGATGTCAACGTAGGGTCTCGGTGAGTCAAAGTGTC | + |
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Preference number: 5 (lower is better) Translates to: ECSVEEFLLFLEESW*LFGCQRRVSVSQSV Trigger: GACACTTTGACTCACCGAGACCCTACGTTGACATCCGAAAAGCCACCAGGATTCTTCTAGAAAGAGGAGGAATTCTTCCACAGAACATTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS-3UTR CAA 90 bp | TCATTTCAATTCCCTGTGCTGGGCTCCATGCCTAAACAAAAGTTGGCATCTACCAATCCATGCAGGAAGTaGTCTGGGATCAGAGGAGAT | + |
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Preference number: 5 (lower is better) Translates to: SFQFPVLGSMPKQKLASTNPCRK*SGIRGD Trigger: ATCTCCTCTGATCCCAGACAACTTCCTGCATGGATT...GGTAGATGCCAACTTTTGTTTAGGCATGGAGCCCAGCACAGGGAATTGAAATGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS CCA 90 bp | GCTGGATGTCTTCTAGTTCTTGAGTTGTGGTCACGTTTATTCCAGTaGATGGTTTCAAAAGGCTATCCCTCCAAGCTCCCTGTAGATCTT | + |
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Preference number: 5 (lower is better) Translates to: AGCLLVLELWSRLFQ*MVSKGYPSKLPVDL Trigger: AAGATCTACAGGGAGCTTGGAGGGATAGCCTTTTGAAACCATCCACTGGAATAAACGTGACCACAACTCAAGAACTAGAAGACATCCAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS-3UTR CAA 90 bp | TCATTTCAATTCCCTGTGCTGGGCTCCATGCCTAAACAAAAGTTGGCATCTACCCCTGCGAACATTTTCTaGAACAACCACTTTGGGATC | + |
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Preference number: 5 (lower is better) Translates to: SFQFPVLGSMPKQKLASTPANIF*NNHFGI Trigger: GATCCCAAAGTGGTTGTTCAAGAAAATGTTCGCAGG...GGTAGATGCCAACTTTTGTTTAGGCATGGAGCCCAGCACAGGGAATTGAAATGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS TCA 90 bp | TCCAAGCTCCCTGTAGATCTTCAAACTCAAACTCATACACCTCGGTaGAGAGTTGACCAACGTAAGCCTTCATTAACAGTTTCCTGTGCT | + |
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Preference number: 5 (lower is better) Translates to: SKLPVDLQTQTHTPR*RVDQRKPSLTVSCA Trigger: AGCACAGGAAACTGTTAATGAAGGCTTACGTTGGTCAACTCTTCACCGAGGTGTATGAGTTTGAGTTTGAAGATCTACAGGGAGCTTGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS GCA 90 bp | CCACACTTCACTGGCGTGATCAGTCTTTATTCGGTAAAATTTCTCTaGGTTAAATCCGGCAGCATTTGCCAACCTGCGAACATTTTCTTG | + |
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Preference number: 5 (lower is better) Translates to: PHFTGVISLYSVKFL*VKSGSICQPANIFL Trigger: CAAGAAAATGTTCGCAGGTTGGCAAATGCTGCCGGATTTAACGCAGAGAAATTTTACCGAATAAAGACTGATCACGCCAGTGAAGTGTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS-3UTR CAA 90 bp | ACAGCCCTGGCCTTGATTTATAGACAAATACAGAGAACGACCTTCAGGAATGACTTGGGATCTCTCCTTTaGGAACTACTGAAAAGATTG | + |
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Preference number: 5 (lower is better) Translates to: TALALIYRQIQRTTFRNDLGSLL*ELLKRL Trigger: CAATCTTTTCAGTAGTTCCAAAAGGAGAGATCCCAA...GTCATTCCTGAAGGTCGTTCTCTGTATTTGTCTATAAATCAAGGCCAGGGCTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS-3UTR CAA 90 bp | ACTTCATTTCAATTCCCTGTGCTGGGCTCCATGCCTAAACAAAAGTTGGCATCTATCTTCCTTCTGGTCTaGAATGTTCTGTGGAAGAAT | + |
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Preference number: 5 (lower is better) Translates to: TSFQFPVLGSMPKQKLASIFLLV*NVLWKN Trigger: ATTCTTCCACAGAACATTCAAGACCAGAAGGAAGAT...AGATGCCAACTTTTGTTTAGGCATGGAGCCCAGCACAGGGAATTGAAATGAAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS GCA 90 bp | AGTCTTTATTCGGTAAAATTTCTCTGCGTTAAATCCGGCAGCATTTaGCAACCTGCGAACATTTTCTTGAACAACCACTTTGGGATCTCT | + |
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Preference number: 5 (lower is better) Translates to: SLYSVKFLCVKSGSI*QPANIFLNNHFGIS Trigger: AGAGATCCCAAAGTGGTTGTTCAAGAAAATGTTCGCAGGTTGGCAAATGCTGCCGGATTTAACGCAGAGAAATTTTACCGAATAAAGACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS GCA 72 bp | GGAGTGAGCAACCCCACATGCCTTTTTCACAGGATCTaGGAAGACGATGGGTATACAGTCGGCGCCAAGAGC | + |
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Preference number: 6 (lower is better) Translates to: GVSNPTCLFHRI*EDDGYTVGAKS Trigger: GCTCTTGGCGCCGACTGTATACCCATCGTCTTCGCAGATCCTGTGAAAAAGGCATGTGGGGTTGCTCACTCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS CCA 72 bp | CCAATCTGTGTACCGAAGTTAAGGCCATCGCGGACATaGGAGAAAAACTTCTCAGGATGGCAGGACGTGCAG | + |
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Preference number: 6 (lower is better) Translates to: PICVPKLRPSRT*EKNFSGWQDVQ Trigger: CTGCACGTCCTGCCATCCTGAGAAGTTTTTCTCCCATGTCCGCGATGGCCTTAACTTCGGTACACAGATTGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS TCA 72 bp | GGGATGGCTAACAGTCTCGAATTTTCCCGCGAGACGTaGAAAGCCATTTCCTGCTTCCAATTCACAGAGGCC | + |
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Preference number: 6 (lower is better) Translates to: GMANSLEFSRET*KAISCFQFTEA Trigger: GGCCTCTGTGAATTGGAAGCAGGAAATGGCTTTTCACGTCTCGCGGGAAAATTCGAGACTGTTAGCCATCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062789.15 ENSMUST00000142300.2 |
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| CDS CAA 90 bp | ACGGAAGATATGCCCCCTGTCCGTGTGGTAAATCCATGCAGGAAGTaGTCTGGGATCAGAGGAGATGTGACAATAGTTAGGTCCCCTTTC | + |
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Preference number: 6 (lower is better) Translates to: TEDMPPVRVVNPCRK*SGIRGDVTIVRSPF Trigger: GAAAGGGGACCTAACTATTGTCACATCTCCTCTGATCCCAGACAACTTCCTGCATGGATTTACCACACGGACAGGGGGCATATCTTCCGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS CAA 72 bp | ATGCCCCCTGTCCGTGTGGTAAATCCATGCAGGAAGTaGTCTGGGATCAGAGGAGATGTGACAATAGTTAGG | + |
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Preference number: 6 (lower is better) Translates to: MPPVRVVNPCRK*SGIRGDVTIVR Trigger: CCTAACTATTGTCACATCTCCTCTGATCCCAGACAACTTCCTGCATGGATTTACCACACGGACAGGGGGCAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS GCA 72 bp | GGACATGGGAGAAAAACTTCTCAGGATGGCAGGACGTaGAGAGGTCAAGATCTTCCTTCTGGTCTTGAATGT | + |
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Preference number: 6 (lower is better) Translates to: GHGRKTSQDGRT*RGQDLPSGLEC Trigger: ACATTCAAGACCAGAAGGAAGATCTTGACCTCTGCACGTCCTGCCATCCTGAGAAGTTTTTCTCCCATGTCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS CCA 72 bp | GTGGAAGAATTCCTCCTCTTTCTAGAAGAATCCTGGTaGCTTTTCGGATGTCAACGTAGGGTCTCGGTGAGT | + |
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Preference number: 6 (lower is better) Translates to: VEEFLLFLEESW*LFGCQRRVSVS Trigger: ACTCACCGAGACCCTACGTTGACATCCGAAAAGCCACCAGGATTCTTCTAGAAAGAGGAGGAATTCTTCCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS CCA 72 bp | TCTGTGGAAGAATTCCTCCTCTTTCTAGAAGAATCCTaGTGGCTTTTCGGATGTCAACGTAGGGTCTCGGTG | + |
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Preference number: 6 (lower is better) Translates to: SVEEFLLFLEES*WLFGCQRRVSV Trigger: CACCGAGACCCTACGTTGACATCCGAAAAGCCACCAGGATTCTTCTAGAAAGAGGAGGAATTCTTCCACAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS CCA 72 bp | TGCTGGCATTTCTGCAACATATTATGCAAAGGAACTTaGCCTTGGGAGCGTGGTGGTAGTGAATACCATCCA | + |
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Preference number: 6 (lower is better) Translates to: CWHFCNILCKGT*PWERGGSEYHP Trigger: TGGATGGTATTCACTACCACCACGCTCCCAAGGCCAAGTTCCTTTGCATAATATGTTGCAGAAATGCCAGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062789.15 ENSMUST00000142300.2 |
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| CDS CCA 72 bp | TGTTTAATTGTATACAAAGAGGCAGCCAGGCAGGGATaGCTAACAGTCTCGAATTTTCCCGCGAGACGTGAA | + |
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Preference number: 6 (lower is better) Translates to: CLIVYKEAARQG*LTVSNFPARRE Trigger: TTCACGTCTCGCGGGAAAATTCGAGACTGTTAGCCATCCCTGCCTGGCTGCCTCTTTGTATACAATTAAACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062789.15 ENSMUST00000142300.2 |
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| CDS GCA 72 bp | ACTGGCGTGATCAGTCTTTATTCGGTAAAATTTCTCTaGGTTAAATCCGGCAGCATTTGCCAACCTGCGAAC | + |
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Preference number: 6 (lower is better) Translates to: TGVISLYSVKFL*VKSGSICQPAN Trigger: GTTCGCAGGTTGGCAAATGCTGCCGGATTTAACGCAGAGAAATTTTACCGAATAAAGACTGATCACGCCAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS CCA 72 bp | CTTCTAGTTCTTGAGTTGTGGTCACGTTTATTCCAGTaGATGGTTTCAAAAGGCTATCCCTCCAAGCTCCCT | + |
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Preference number: 6 (lower is better) Translates to: LLVLELWSRLFQ*MVSKGYPSKLP Trigger: AGGGAGCTTGGAGGGATAGCCTTTTGAAACCATCCACTGGAATAAACGTGACCACAACTCAAGAACTAGAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS TCA 72 bp | CCTGTAGATCTTCAAACTCAAACTCATACACCTCGGTaGAGAGTTGACCAACGTAAGCCTTCATTAACAGTT | + |
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Preference number: 6 (lower is better) Translates to: PVDLQTQTHTPR*RVDQRKPSLTV Trigger: AACTGTTAATGAAGGCTTACGTTGGTCAACTCTTCACCGAGGTGTATGAGTTTGAGTTTGAAGATCTACAGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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| CDS GCA 72 bp | TCGGTAAAATTTCTCTGCGTTAAATCCGGCAGCATTTaGCAACCTGCGAACATTTTCTTGAACAACCACTTT | + |
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Preference number: 6 (lower is better) Translates to: SVKFLCVKSGSI*QPANIFLNNHF Trigger: AAAGTGGTTGTTCAAGAAAATGTTCGCAGGTTGGCAAATGCTGCCGGATTTAACGCAGAGAAATTTTACCGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062789.15 |
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