Pregenerated sensors for L1TD1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000087166Ensembl transcript IDs: ENSMUST00000152889.9, ENSMUST00000154279.3, ENSMUST00000171708.2, ENSMUST00000173659.2
Found 116 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GTCAGCCTGCAGTCTCTTCTAACTTATCATGTCCTTTCCCATCCCACTGTGGCCCGTGTGTGGTCACACTaGCAAGATTCCTCCTTACCA | + |
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Preference number: 2 (lower is better) Translates to: VSLQSLLTYHVLSHPTVARVWSH*QDSSLP Trigger: TGGTAAGGAGGAATCTTGTCAGTGTGACCACACACG...GGCCACAGTGGGATGGGAAAGGACATGATAAGTTAGAAGAGACTGCAGGCTGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| 3UTR-3UTR CCA 90 bp | TATCATGTCCTTTCCCATCCCACTGTGGCCTCTAGTATTTTTCCGTGTGTGGTCCTTGGTTTTGTATTTTaGTGGACAGAGAGCACTCCA | + |
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Preference number: 2 (lower is better) Translates to: YHVLSHPTVASSIFPCVVLGFVF*WTESTP Trigger: TGGAGTGCTCTCTGTCCACCAAAATACAAAACCAAG...GACCACACACGGAAAAATACTAGAGGCCACAGTGGGATGGGAAAGGACATGATA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| 3UTR-3UTR CCA 90 bp | TGTAATCTTGTTGAGTCAGTCAGCCTGCAGTCTCTTCTAACTTATCATGTCCTTGGTTTTGTATTTTGGTaGACAGAGAGCACTCCAGGT | + |
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Preference number: 2 (lower is better) Translates to: CNLVESVSLQSLLTYHVLGFVFW*TESTPG Trigger: ACCTGGAGTGCTCTCTGTCCACCAAAATACAAAACC...AAGGACATGATAAGTTAGAAGAGACTGCAGGCTGACTGACTCAACAAGATTACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| 3UTR-3UTR CCA 90 bp | TCTAGTATTTTTCCGTGTGTGGTCACACTGACAAGATTCCTCCTTACCAAGGTACTGTCCAACTCTACTTaGTTTTGTATTTTGGTGGAC | + |
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Preference number: 2 (lower is better) Translates to: SSIFPCVVTLTRFLLTKVLSNST*FCILVD Trigger: GTCCACCAAAATACAAAACCAAGTAGAGTTGGACAG...TACCTTGGTAAGGAGGAATCTTGTCAGTGTGACCACACACGGAAAAATACTAGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| 3UTR CCA 72 bp | AGACAGAGACGTGATGGTCCACTGTCCAACTCTACTTaGTTTTGTATTTTGGTGGACAGAGAGCACTCCAGG | + |
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Preference number: 3 (lower is better) Translates to: RQRRDGPLSNST*FCILVDREHSR Trigger: CCTGGAGTGCTCTCTGTCCACCAAAATACAAAACCAAGTAGAGTTGGACAGTGGACCATCACGTCTCTGTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| 3UTR-3UTR CAA 90 bp | ATCATGTCCTTTCCCATCCCACTGTGGCCTCTAGTATTTTTCCGTGTGTGGTCACAACTCTACTTGGTTTaGTATTTTGGTGGACAGAGA | + |
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Preference number: 3 (lower is better) Translates to: IMSFPIPLWPLVFFRVWSQLYLV*YFGGQR Trigger: TCTCTGTCCACCAAAATACAAAACCAAGTAGAGTTG...TGACCACACACGGAAAAATACTAGAGGCCACAGTGGGATGGGAAAGGACATGAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| 3UTR-3UTR CAA 90 bp | TCTAGTATTTTTCCGTGTGTGGTCACACTGACAAGATTCCTCCTTACCAAGGTAACTGTCCAACTCTACTaGGTTTTGTATTTTGGTGGA | + |
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Preference number: 3 (lower is better) Translates to: SSIFPCVVTLTRFLLTKVTVQLY*VLYFGG Trigger: TCCACCAAAATACAAAACCAAGTAGAGTTGGACAGT...TACCTTGGTAAGGAGGAATCTTGTCAGTGTGACCACACACGGAAAAATACTAGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| CDS-3UTR GCA 90 bp | GACGTGATGGTCCACTGTCCAACTCTACTTGGTTTTGTATTTTGGTGGACAGAGTGCTCTCTCCACACCTaGCATGTTCCCCACGCAGGG | + |
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Preference number: 4 (lower is better) Translates to: DVMVHCPTLLGFVFWWTECSLHT*HVPHAG Trigger: CCCTGCGTGGGGAACATGGCAGGTGTGGAGAGAGCA...CTCTGTCCACCAAAATACAAAACCAAGTAGAGTTGGACAGTGGACCATCACGTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| CDS-3UTR CCA 90 bp | CTGCAGTCTCTTCTAACTTATCATGTCCTTTCCCATCCCACTGTGGCCTCTAGTAGAAGGCGGAAGACTTaGCTCCACTGCCTGCCGACA | + |
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Preference number: 4 (lower is better) Translates to: LQSLLTYHVLSHPTVASSRRRKT*LHCLPT Trigger: TGTCGGCAGGCAGTGGAGCCAAGTCTTCCGCCTTCT...ACTAGAGGCCACAGTGGGATGGGAAAGGACATGATAAGTTAGAAGAGACTGCAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| CDS-3UTR TCA 90 bp | CATGTCCTTTCCCATCCCACTGTGGCCTCTAGTATTTTTCCGTGTGTGGTCACATCTTTCCGCTCCTTTTaGAGCCTGGCTGCTTTGGAC | + |
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Preference number: 4 (lower is better) Translates to: HVLSHPTVASSIFPCVVTSFRSF*SLAALD Trigger: GTCCAAAGCAGCCAGGCTTCAAAAGGAGCGGAAAGA...TGTGACCACACACGGAAAAATACTAGAGGCCACAGTGGGATGGGAAAGGACATG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| CDS-3UTR TCA 90 bp | GTCAGCCTGCAGTCTCTTCTAACTTATCATGTCCTTTCCCATCCCACTGTGGCCCCCCCTCCTGCTTCTTaGGAGTTCCTTTATTCTTCC | + |
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Preference number: 4 (lower is better) Translates to: VSLQSLLTYHVLSHPTVAPPPAS*EFLYSS Trigger: GGAAGAATAAAGGAACTCTCAAGAAGCAGGAGGGGG...GGCCACAGTGGGATGGGAAAGGACATGATAAGTTAGAAGAGACTGCAGGCTGAC 51% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| CDS-3UTR TCA 90 bp | CTGCAGTCTCTTCTAACTTATCATGTCCTTTCCCATCCCACTGTGGCCTCTAGTGGCATCCCGATCCTTTaGGTAGAAGCAGCAGCTGCT | + |
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Preference number: 4 (lower is better) Translates to: LQSLLTYHVLSHPTVASSGIPIL*VEAAAA Trigger: AGCAGCTGCTGCTTCTACTCAAAGGATCGGGATGCC...ACTAGAGGCCACAGTGGGATGGGAAAGGACATGATAAGTTAGAAGAGACTGCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| CDS-3UTR CCA 90 bp | TATCATGTCCTTTCCCATCCCACTGTGGCCTCTAGTATTTTTCCGTGTGTGGTCGCTCCTTTTGAAGCCTaGCTGCTTTGGACTGCACGC | + |
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Preference number: 4 (lower is better) Translates to: YHVLSHPTVASSIFPCVVAPFEA*LLWTAR Trigger: GCGTGCAGTCCAAAGCAGCCAGGCTTCAAAAGGAGC...GACCACACACGGAAAAATACTAGAGGCCACAGTGGGATGGGAAAGGACATGATA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| CDS-3UTR TCA 90 bp | ATCATGTCCTTTCCCATCCCACTGTGGCCTCTAGTATTTTTCCGTGTGTGGTCAAGTCAGCTGTCAGTCTaGTCTTGGACCCTCTGTAGG | + |
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Preference number: 4 (lower is better) Translates to: IMSFPIPLWPLVFFRVWSSQLSV*SWTLCR Trigger: CCTACAGAGGGTCCAAGATCAGACTGACAGCTGACT...TGACCACACACGGAAAAATACTAGAGGCCACAGTGGGATGGGAAAGGACATGAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| CDS-3UTR TCA 90 bp | AGACAGAGACGTGATGGTCCACTGTCCAACTCTACTTGGTTTTGTATTTTGGTGCGATTCTCTTCACTCTaGCAGCTGGCTTCTCGGGCT | + |
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Preference number: 4 (lower is better) Translates to: RQRRDGPLSNSTWFCILVRFSSL*QLASRA Trigger: AGCCCGAGAAGCCAGCTGTCAGAGTGAAGAGAATCG...CACCAAAATACAAAACCAAGTAGAGTTGGACAGTGGACCATCACGTCTCTGTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| CDS-3UTR GCA 90 bp | GTCAGCCTGCAGTCTCTTCTAACTTATCATGTCCTTTCCCATCCCACTGTGGCCGGTTTCTCTCATCTCTaGAAACATCACCTCTTGCAT | + |
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Preference number: 4 (lower is better) Translates to: VSLQSLLTYHVLSHPTVAGFSHL*KHHLLH Trigger: ATGCAAGAGGTGATGTTTGCAGAGATGAGAGAAACC...GGCCACAGTGGGATGGGAAAGGACATGATAAGTTAGAAGAGACTGCAGGCTGAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| CDS-3UTR GCA 90 bp | TCTAGTATTTTTCCGTGTGTGGTCACACTGACAAGATTCCTCCTTACCAAGGTAAGTAGAAGCAGCAGCTaGTCCTCCCTCCTGGCATCT | + |
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Preference number: 4 (lower is better) Translates to: SSIFPCVVTLTRFLLTKVSRSSS*SSLLAS Trigger: AGATGCCAGGAGGGAGGAGCAGCTGCTGCTTCTACT...TACCTTGGTAAGGAGGAATCTTGTCAGTGTGACCACACACGGAAAAATACTAGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| CDS-3UTR GCA 90 bp | TCTAGTATTTTTCCGTGTGTGGTCACACTGACAAGATTCCTCCTTACCAAGGTAGTTGGCTCTTCTGTTTaGGGCACCTTGTACCTCCCC | + |
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Preference number: 4 (lower is better) Translates to: SSIFPCVVTLTRFLLTKVVGSSV*GTLYLP Trigger: GGGGAGGTACAAGGTGCCGCAAACAGAAGAGCCAAC...TACCTTGGTAAGGAGGAATCTTGTCAGTGTGACCACACACGGAAAAATACTAGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| CDS-3UTR GCA 90 bp | GACGTGATGGTCCACTGTCCAACTCTACTTGGTTTTGTATTTTGGTGGACAGAGCTAGGCGTGAGTCTGTaGTCATCCACTGAATTAGGG | + |
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Preference number: 4 (lower is better) Translates to: DVMVHCPTLLGFVFWWTELGVSL*SSTELG Trigger: CCCTAATTCAGTGGATGAGCACAGACTCACGCCTAG...CTCTGTCCACCAAAATACAAAACCAAGTAGAGTTGGACAGTGGACCATCACGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| CDS-3UTR TCA 90 bp | CTGCAGTCTCTTCTAACTTATCATGTCCTTTCCCATCCCACTGTGGCCTCTAGTTCGTTAAAAGTGGAGTaGCTTGTGACAGAGCACTCA | + |
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Preference number: 4 (lower is better) Translates to: LQSLLTYHVLSHPTVASSSLKVE*LVTEHS Trigger: TGAGTGCTCTGTCACAAGTCACTCCACTTTTAACGA...ACTAGAGGCCACAGTGGGATGGGAAAGGACATGATAAGTTAGAAGAGACTGCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| CDS-3UTR GCA 90 bp | GACAGAGACGTGATGGTCCACTGTCCAACTCTACTTGGTTTTGTATTTTGGTGGTTTTCTCTCCCTGTCTaGCGACAGCTTTTCTTTCCG | + |
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Preference number: 4 (lower is better) Translates to: DRDVMVHCPTLLGFVFWWFSLPV*RQLFFP Trigger: CGGAAAGAAAAGCTGTCGGCAGACAGGGAGAGAAAA...CCACCAAAATACAAAACCAAGTAGAGTTGGACAGTGGACCATCACGTCTCTGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| CDS-3UTR TCA 90 bp | GACGTGATGGTCCACTGTCCAACTCTACTTGGTTTTGTATTTTGGTGGACAGAGCTTGCAGAATTTTTATaGTACCACACCACTGGCTGC | + |
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Preference number: 4 (lower is better) Translates to: DVMVHCPTLLGFVFWWTELAEFL*YHTTGC Trigger: GCAGCCAGTGGTGTGGTATCATAAAAATTCTGCAAG...CTCTGTCCACCAAAATACAAAACCAAGTAGAGTTGGACAGTGGACCATCACGTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| CDS-3UTR GCA 90 bp | ATGGTCCACTGTCCAACTCTACTTGGTTTTGTATTTTGGTGGACAGAGAGCACTCCCATCACACTTAAATaGCAACTTCACGGAGCACTG | + |
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Preference number: 4 (lower is better) Translates to: MVHCPTLLGFVFWWTESTPITLK*QLHGAL Trigger: CAGTGCTCCGTGAAGTTGGCATTTAAGTGTGATGGG...AGTGCTCTCTGTCCACCAAAATACAAAACCAAGTAGAGTTGGACAGTGGACCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| CDS-3UTR GCA 90 bp | GACGTGATGGTCCACTGTCCAACTCTACTTGGTTTTGTATTTTGGTGGACAGAGTCTTCTTCCCCCTCCTaGTTCTTGAGAGTTCCTTTA | + |
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Preference number: 4 (lower is better) Translates to: DVMVHCPTLLGFVFWWTESSSPS*FLRVPL Trigger: TAAAGGAACTCTCAAGAAGCAGGAGGGGGAAGAAGA...CTCTGTCCACCAAAATACAAAACCAAGTAGAGTTGGACAGTGGACCATCACGTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| CDS-3UTR CCA 90 bp | GACGTGATGGTCCACTGTCCAACTCTACTTGGTTTTGTATTTTGGTGGACAGAGCCGGTTTTCTTTCTCTaGAATCCCTATCACTCGGAT | + |
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Preference number: 4 (lower is better) Translates to: DVMVHCPTLLGFVFWWTEPVFFL*NPYHSD Trigger: ATCCGAGTGATAGGGATTCCAGAGAAAGAAAACCGG...CTCTGTCCACCAAAATACAAAACCAAGTAGAGTTGGACAGTGGACCATCACGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| CDS-3UTR CCA 90 bp | TCTAGTATTTTTCCGTGTGTGGTCACACTGACAAGATTCCTCCTTACCAAGGTAACAATCTCGAGGCTCTaGTCTTCTAGCTCGGCAAAG | + |
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Preference number: 4 (lower is better) Translates to: SSIFPCVVTLTRFLLTKVTISRL*SSSSAK Trigger: CTTTGCCGAGCTAGAAGACCAGAGCCTCGAGATTGT...TACCTTGGTAAGGAGGAATCTTGTCAGTGTGACCACACACGGAAAAATACTAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| CDS-3UTR TCA 90 bp | TATCATGTCCTTTCCCATCCCACTGTGGCCTCTAGTATTTTTCCGTGTGTGGTCACTCAACTTTGTACATaGATGGCTTTTAGGACCATC | + |
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Preference number: 4 (lower is better) Translates to: YHVLSHPTVASSIFPCVVTQLCT*MAFRTI Trigger: GATGGTCCTAAAAGCCATTCATGTACAAAGTTGAGT...GACCACACACGGAAAAATACTAGAGGCCACAGTGGGATGGGAAAGGACATGATA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| CDS-3UTR GCA 90 bp | ACTGTCCAACTCTACTTGGTTTTGTATTTTGGTGGACAGAGAGCACTCCAGGTTCCTGCTTACCCTTCTTaGTTCTCACAGTCAGGTTTT | + |
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Preference number: 4 (lower is better) Translates to: TVQLYLVLYFGGQRALQVPAYPS*FSQSGF Trigger: AAAACCTGACTGTGAGAAGCAAGAAGGGTAAGCAGG...AACCTGGAGTGCTCTCTGTCCACCAAAATACAAAACCAAGTAGAGTTGGACAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| CDS-3UTR GCA 90 bp | AGACAGAGACGTGATGGTCCACTGTCCAACTCTACTTGGTTTTGTATTTTGGTGGGTTTAGCTTTGTCCTaGTTACCCTTCTTGCTTCTC | + |
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Preference number: 4 (lower is better) Translates to: RQRRDGPLSNSTWFCILVGLALS*LPFLLL Trigger: GAGAAGCAAGAAGGGTAAGCAGGACAAAGCTAAACC...CACCAAAATACAAAACCAAGTAGAGTTGGACAGTGGACCATCACGTCTCTGTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| CDS-3UTR CCA 90 bp | ACTGTCCAACTCTACTTGGTTTTGTATTTTGGTGGACAGAGAGCACTCCAGGTTTTAAGCACAGAGATGTaGCCGTTTTTCTCTCCCTGT | + |
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Preference number: 4 (lower is better) Translates to: TVQLYLVLYFGGQRALQVLSTEM*PFFSPC Trigger: ACAGGGAGAGAAAAACGGCCACATCTCTGTGCTTAA...AACCTGGAGTGCTCTCTGTCCACCAAAATACAAAACCAAGTAGAGTTGGACAGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| CDS-3UTR CCA 90 bp | AGACAGAGACGTGATGGTCCACTGTCCAACTCTACTTGGTTTTGTATTTTGGTGGTAAGTCTTCACCTCTaGACTAGCAACTTCTACCTC | + |
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Preference number: 4 (lower is better) Translates to: RQRRDGPLSNSTWFCILVVSLHL*TSNFYL Trigger: GAGGTAGAAGTTGCTAGTCCAGAGGTGAAGACTTAC...CACCAAAATACAAAACCAAGTAGAGTTGGACAGTGGACCATCACGTCTCTGTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| CDS-3UTR CCA 90 bp | ACTGTCCAACTCTACTTGGTTTTGTATTTTGGTGGACAGAGAGCACTCCAGGTTGATGATTTCAGGACATaGCTGCTGTTGAGTGGTTTA | + |
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Preference number: 4 (lower is better) Translates to: TVQLYLVLYFGGQRALQVDDFRT*LLLSGL Trigger: TAAACCACTCAACAGCAGCCATGTCCTGAAATCATC...AACCTGGAGTGCTCTCTGTCCACCAAAATACAAAACCAAGTAGAGTTGGACAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| CDS-3UTR CCA 90 bp | ATCATGTCCTTTCCCATCCCACTGTGGCCTCTAGTATTTTTCCGTGTGTGGTCAAGTTCTTTAAGCCCATaGAAGGTCTCCTTTTTCTTA | + |
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Preference number: 4 (lower is better) Translates to: IMSFPIPLWPLVFFRVWSSSLSP*KVSFFL Trigger: TAAGAAAAAGGAGACCTTCCATGGGCTTAAAGAACT...TGACCACACACGGAAAAATACTAGAGGCCACAGTGGGATGGGAAAGGACATGAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| CDS-3UTR TCA 90 bp | GACGTGATGGTCCACTGTCCAACTCTACTTGGTTTTGTATTTTGGTGGACAGAGGTTTACTTCTTCCTCTaGTTCAGAATCTACTACCAA | + |
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Preference number: 4 (lower is better) Translates to: DVMVHCPTLLGFVFWWTEVYFFL*FRIYYQ Trigger: TTGGTAGTAGATTCTGAATCAGAGGAAGAAGTAAAC...CTCTGTCCACCAAAATACAAAACCAAGTAGAGTTGGACAGTGGACCATCACGTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| CDS-3UTR GCA 90 bp | TATCATGTCCTTTCCCATCCCACTGTGGCCTCTAGTATTTTTCCGTGTGTGGTCGCAAACATCACCTCTTaGATTTCCATTAAAGCATTA | + |
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Preference number: 4 (lower is better) Translates to: YHVLSHPTVASSIFPCVVANITS*ISIKAL Trigger: TAATGCTTTAATGGAAATGCAAGAGGTGATGTTTGC...GACCACACACGGAAAAATACTAGAGGCCACAGTGGGATGGGAAAGGACATGATA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| CDS-3UTR GCA 90 bp | CTGCAGTCTCTTCTAACTTATCATGTCCTTTCCCATCCCACTGTGGCCTCTAGTACCTTTAAAATCAAATaGCAGTTTGGCAGGATAAAG | + |
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Preference number: 4 (lower is better) Translates to: LQSLLTYHVLSHPTVASSTFKIK*QFGRIK Trigger: CTTTATCCTGCCAAACTGGCATTTGATTTTAAAGGT...ACTAGAGGCCACAGTGGGATGGGAAAGGACATGATAAGTTAGAAGAGACTGCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| CDS-3UTR CCA 90 bp | TCTAGTATTTTTCCGTGTGTGGTCACACTGACAAGATTCCTCCTTACCAAGGTACTATCACTCGGATGTTaGAGCTTCGAAACCTATCTT | + |
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Preference number: 4 (lower is better) Translates to: SSIFPCVVTLTRFLLTKVLSLGC*SFETYL Trigger: AAGATAGGTTTCGAAGCTCCAACATCCGAGTGATAG...TACCTTGGTAAGGAGGAATCTTGTCAGTGTGACCACACACGGAAAAATACTAGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| CDS-3UTR CCA 90 bp | ACTGTCCAACTCTACTTGGTTTTGTATTTTGGTGGACAGAGAGCACTCCAGGTTTTTCTTGTTTTGCTCTaGAAGCTTTTAGGACTCTCT | + |
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Preference number: 4 (lower is better) Translates to: TVQLYLVLYFGGQRALQVFLVLL*KLLGLS Trigger: AGAGAGTCCTAAAAGCTTCCAGAGCAAAACAAGAAA...AACCTGGAGTGCTCTCTGTCCACCAAAATACAAAACCAAGTAGAGTTGGACAGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| CDS-3UTR CCA 90 bp | AGACAGAGACGTGATGGTCCACTGTCCAACTCTACTTGGTTTTGTATTTTGGTGAATCAAATGCCAGTTTaGCAGGATAAAGGATTCTTG | + |
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Preference number: 4 (lower is better) Translates to: RQRRDGPLSNSTWFCILVNQMPV*QDKGFL Trigger: CAAGAATCCTTTATCCTGCCAAACTGGCATTTGATT...CACCAAAATACAAAACCAAGTAGAGTTGGACAGTGGACCATCACGTCTCTGTCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| CDS-3UTR GCA 90 bp | TGTAATCTTGTTGAGTCAGTCAGCCTGCAGTCTCTTCTAACTTATCATGTCCTTATTAAAGCATTAAACTaGTTCATCATGGATGCAGGT | + |
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Preference number: 4 (lower is better) Translates to: CNLVESVSLQSLLTYHVLIKALN*FIMDAG Trigger: ACCTGCATCCATGATGAAGCAGTTTAATGCTTTAAT...AAGGACATGATAAGTTAGAAGAGACTGCAGGCTGACTGACTCAACAAGATTACA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| CDS TCA 90 bp | GGGTGGCTCCGGCGCCTCCTTCGGGCGGGCTCTCTTTGGGGGCCTTaGGACGATTCTCTTCACTCTGACAGCTGGCTTCTCGGGCTGGCT | + |
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Preference number: 5 (lower is better) Translates to: GWLRRLLRAGSLWGP*DDSLHSDSWLLGLA Trigger: AGCCAGCCCGAGAAGCCAGCTGTCAGAGTGAAGAGAATCGTCTCAAGGCCCCCAAAGAGAGCCCGCCCGAAGGAGGCGCCGGAGCCACCC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000154279.3 ENSMUST00000173659.2 |
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| CDS GCA 90 bp | CTCGGGCTGGCTTCTCATTCGCATTCTTCCAGTCTACAAGGCTGCTaGTCTCTCCACACCTGCCATGTTCCCCACGCAGGGCTTCTCCCC | + |
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Preference number: 5 (lower is better) Translates to: LGLASHSHSSSLQGC*SLHTCHVPHAGLLP Trigger: GGGGAGAAGCCCTGCGTGGGGAACATGGCAGGTGTGGAGAGAGCAGCAGCCTTGTAGACTGGAAGAATGCGAATGAGAAGCCAGCCCGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000154279.3 ENSMUST00000173659.2 |
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| CDS GCA 90 bp | GGCTCCAACTCCTTTTCTTTCAGAAGGCGGAAGACTTGGCTCCACTaGCTGCCGACATCCAGCGTGGCTGCCGAGAAGTCAGCAGCCAGC | + |
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Preference number: 5 (lower is better) Translates to: GSNSFSFRRRKTWLH*LPTSSVAAEKSAAS Trigger: GCTGGCTGCTGACTTCTCGGCAGCCACGCTGGATGTCGGCAGGCAGTGGAGCCAAGTCTTCCGCCTTCTGAAAGAAAAGGAGTTGGAGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000154279.3 ENSMUST00000173659.2 |
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| CDS GCA 90 bp | CTTCTCGGGCTGGCTTCTCATTCGCATTCTTCCAGTCTACAAGGCTaGTGCTCTCTCCACACCTGCCATGTTCCCCACGCAGGGCTTCTC | + |
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Preference number: 5 (lower is better) Translates to: LLGLASHSHSSSLQG*CSLHTCHVPHAGLL Trigger: GAGAAGCCCTGCGTGGGGAACATGGCAGGTGTGGAGAGAGCAGCAGCCTTGTAGACTGGAAGAATGCGAATGAGAAGCCAGCCCGAGAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000154279.3 ENSMUST00000173659.2 |
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| CDS GCA 90 bp | CCAACTCCTTTTCTTTCAGAAGGCGGAAGACTTGGCTCCACTGCCTaGCGACATCCAGCGTGGCTGCCGAGAAGTCAGCAGCCAGCCTTA | + |
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Preference number: 5 (lower is better) Translates to: PTPFLSEGGRLGSTA*RHPAWLPRSQQPAL Trigger: TAAGGCTGGCTGCTGACTTCTCGGCAGCCACGCTGGATGTCGGCAGGCAGTGGAGCCAAGTCTTCCGCCTTCTGAAAGAAAAGGAGTTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000154279.3 ENSMUST00000173659.2 |
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| CDS GCA 90 bp | AATCTCCTCAGCACTCCTGGTGATTTTCCCAACACCACATTCTCCTaGCACTACAAGGCCCTGAAAGGCCGAGCCCAGAACTTCGCTTCG | + |
|
Preference number: 5 (lower is better) Translates to: NLLSTPGDFPNTTFS*HYKALKGRAQNFAS Trigger: CGAAGCGAAGTTCTGGGCTCGGCCTTTCAGGGCCTTGTAGTGGCAGGAGAATGTGGTGTTGGGAAAATCACCAGGAGTGCTGAGGAGATT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173659.2 |
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| CDS CCA 90 bp | GGCCTTGAGACGATTCTCTTCACTCTGACAGCTGGCTTCTCGGGCTaGCTTCTCATTCGCATTCTTCCAGTCTACAAGGCTGCTGCTCTC | + |
|
Preference number: 5 (lower is better) Translates to: GLETILFTLTAGFSG*LLIRILPVYKAAAL Trigger: GAGAGCAGCAGCCTTGTAGACTGGAAGAATGCGAATGAGAAGCCAGCCCGAGAAGCCAGCTGTCAGAGTGAAGAGAATCGTCTCAAGGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000154279.3 ENSMUST00000173659.2 |
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| CDS CCA 90 bp | CCACTACAAGGCCCTGAAAGGCCGAGCCCAGAACTTCGCTTCGTATaGAGGCTACCTCCTTCTTCCCCATTTCTGAGTTCTCTTCCTCCT | + |
|
Preference number: 5 (lower is better) Translates to: PLQGPERPSPELRFV*RLPPSSPFLSSLPP Trigger: AGGAGGAAGAGAACTCAGAAATGGGGAAGAAGGAGGTAGCCTCCATACGAAGCGAAGTTCTGGGCTCGGCCTTTCAGGGCCTTGTAGTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173659.2 |
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| CDS CCA 90 bp | GCCTTTCTTTATCAACGATCTCCCTGGCTAACTGCATTGTATCCTTaGTCAGTCCCTCCACGGCATCTTCCTGTTCGCTCACCCTGGCCT | + |
|
Preference number: 5 (lower is better) Translates to: AFLYQRSPWLTALYP*SVPPRHLPVRSPWP Trigger: AGGCCAGGGTGAGCGAACAGGAAGATGCCGTGGAGGGACTGACCAAGGATACAATGCAGTTAGCCAGGGAGATCGTTGATAAAGAAAGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000154279.3 ENSMUST00000173659.2 |
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| CDS TCA 90 bp | GATGGAGAAGTCAAATATAAGGTTAGACACGGCATCCCGATCCTTTaGGTAGAAGCAGCAGCTGCTCCTCCCTCCTGGCATCTCACCAGC | + |
|
Preference number: 5 (lower is better) Translates to: DGEVKYKVRHGIPIL*VEAAAAPPSWHLTS Trigger: GCTGGTGAGATGCCAGGAGGGAGGAGCAGCTGCTGCTTCTACTCAAAGGATCGGGATGCCGTGTCTAACCTTATATTTGACTTCTCCATC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000154279.3 ENSMUST00000173659.2 |
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| CDS GCA 90 bp | ACGTTCGCCTCCCCATCACACTTAAATGCCAACTTCACGGAGCACTaGAGCTCAGGCTCCAACTCCTTTTCTTTCAGAAGGCGGAAGACT | + |
|
Preference number: 5 (lower is better) Translates to: TFASPSHLNANFTEH*SSGSNSFSFRRRKT Trigger: AGTCTTCCGCCTTCTGAAAGAAAAGGAGTTGGAGCCTGAGCTGCAGTGCTCCGTGAAGTTGGCATTTAAGTGTGATGGGGAGGCGAACGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000154279.3 ENSMUST00000173659.2 |
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| CDS CCA 90 bp | CCACGCAGGGCTTCTCCCCCTCTCTCTAGTGATGATTTCAGGACATaGCTGCTGTTGAGTGGTTTAGCTTTGTCCTGCTTACCCTTCTTG | + |
|
Preference number: 5 (lower is better) Translates to: PRRASPPLSSDDFRT*LLLSGLALSCLPFL Trigger: CAAGAAGGGTAAGCAGGACAAAGCTAAACCACTCAACAGCAGCCATGTCCTGAAATCATCACTAGAGAGAGGGGGAGAAGCCCTGCGTGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000154279.3 ENSMUST00000173659.2 |
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| CDS CCA 90 bp | TATCCTTGGTCAGTCCCTCCACGGCATCTTCCTGTTCGCTCACCCTaGCCTCAATCGTGCAAGCTAAGGAATTCAGATCATCCAGTGAAC | + |
|
Preference number: 5 (lower is better) Translates to: YPWSVPPRHLPVRSP*PQSCKLRNSDHPVN Trigger: GTTCACTGGATGATCTGAATTCCTTAGCTTGCACGATTGAGGCCAGGGTGAGCGAACAGGAAGATGCCGTGGAGGGACTGACCAAGGATA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000154279.3 ENSMUST00000173659.2 |
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| CDS-3UTR CAA 90 bp | GTCAGCCTGCAGTCTCTTCTAACTTATCATGTCCTTTCCCATCCCACTGTGGCCTTGGCCTTTCCGAGATaGCATCTCCTTCTTGCTGCC | + |
|
Preference number: 5 (lower is better) Translates to: VSLQSLLTYHVLSHPTVALAFPR*HLLLAA Trigger: GGCAGCAAGAAGGAGATGCAATCTCGGAAAGGCCAA...GGCCACAGTGGGATGGGAAAGGACATGATAAGTTAGAAGAGACTGCAGGCTGAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| CDS GCA 90 bp | TCCCTCTCTCTCAGCCTTTCTTTATCAACGATCTCCCTGGCTAACTaGATTGTATCCTTGGTCAGTCCCTCCACGGCATCTTCCTGTTCG | + |
|
Preference number: 5 (lower is better) Translates to: SLSLSLSLSTISLAN*IVSLVSPSTASSCS Trigger: CGAACAGGAAGATGCCGTGGAGGGACTGACCAAGGATACAATGCAGTTAGCCAGGGAGATCGTTGATAAAGAAAGGCTGAGAGAGAGGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000154279.3 ENSMUST00000173659.2 |
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| CDS-3UTR CAA 90 bp | ATCATGTCCTTTCCCATCCCACTGTGGCCTCTAGTATTTTTCCGTGTGTGGTCACCCTGGCTAACTGCATaGTATCCTTGGTCAGTCCCT | + |
|
Preference number: 5 (lower is better) Translates to: IMSFPIPLWPLVFFRVWSPWLTA*YPWSVP Trigger: AGGGACTGACCAAGGATACAATGCAGTTAGCCAGGG...TGACCACACACGGAAAAATACTAGAGGCCACAGTGGGATGGGAAAGGACATGAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| CDS CCA 90 bp | ACCTATCTTCCCTCTCTCTCAGCCTTTCTTTATCAACGATCTCCCTaGCTAACTGCATTGTATCCTTGGTCAGTCCCTCCACGGCATCTT | + |
|
Preference number: 5 (lower is better) Translates to: TYLPSLSAFLYQRSP*LTALYPWSVPPRHL Trigger: AAGATGCCGTGGAGGGACTGACCAAGGATACAATGCAGTTAGCCAGGGAGATCGTTGATAAAGAAAGGCTGAGAGAGAGGGAAGATAGGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000154279.3 ENSMUST00000173659.2 |
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| CDS-3UTR CAA 90 bp | TCTAGTATTTTTCCGTGTGTGGTCACACTGACAAGATTCCTCCTTACCAAGGTACGGCATCCCGATCCTTaGAGTAGAAGCAGCAGCTGC | + |
|
Preference number: 5 (lower is better) Translates to: SSIFPCVVTLTRFLLTKVRHPDP*SRSSSC Trigger: GCAGCTGCTGCTTCTACTCAAAGGATCGGGATGCCG...TACCTTGGTAAGGAGGAATCTTGTCAGTGTGACCACACACGGAAAAATACTAGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| CDS-3UTR CAA 90 bp | ACTGTCCAACTCTACTTGGTTTTGTATTTTGGTGGACAGAGAGCACTCCAGGTTGATTGCATCTCCTTCTaGCTGCCCTATCCGCTCTTC | + |
|
Preference number: 5 (lower is better) Translates to: TVQLYLVLYFGGQRALQVDCISF*LPYPLF Trigger: GAAGAGCGGATAGGGCAGCAAGAAGGAGATGCAATC...AACCTGGAGTGCTCTCTGTCCACCAAAATACAAAACCAAGTAGAGTTGGACAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| CDS-3UTR CAA 90 bp | ACTGTCCAACTCTACTTGGTTTTGTATTTTGGTGGACAGAGAGCACTCCAGGTTCTCTCTTTGGGGGCCTaGAGACGATTCTCTTCACTC | + |
|
Preference number: 5 (lower is better) Translates to: TVQLYLVLYFGGQRALQVLSLGA*RRFSSL Trigger: GAGTGAAGAGAATCGTCTCAAGGCCCCCAAAGAGAG...AACCTGGAGTGCTCTCTGTCCACCAAAATACAAAACCAAGTAGAGTTGGACAGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| CDS GCA 90 bp | ATGAACAGGAAGCTCAAACTGTCACTCGCTATTCTTCTAGCTTCATaGTTCGTGTCTCCTAGCGTTTTACCCAATCTTTCCCGAAGCTCG | + |
|
Preference number: 5 (lower is better) Translates to: MNRKLKLSLAILLAS*FVSPSVLPNLSRSS Trigger: CGAGCTTCGGGAAAGATTGGGTAAAACGCTAGGAGACACGAAGCATGAAGCTAGAAGAATAGCGAGTGACAGTTTGAGCTTCCTGTTCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000154279.3 ENSMUST00000173659.2 |
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| CDS CCA 90 bp | CGTTCTCCCGGTTTTCTTTCTCTGGAATCCCTATCACTCGGATGTTaGAGCTTCGAAACCTATCTTCCCTCTCTCTCAGCCTTTCTTTAT | + |
|
Preference number: 5 (lower is better) Translates to: RSPGFLSLESLSLGC*SFETYLPSLSAFLY Trigger: ATAAAGAAAGGCTGAGAGAGAGGGAAGATAGGTTTCGAAGCTCCAACATCCGAGTGATAGGGATTCCAGAGAAAGAAAACCGGGAGAACG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000154279.3 ENSMUST00000173659.2 |
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| CDS GCA 90 bp | ATTAAAGCATTAAACTGCTTCATCATGGATGCAGGTACTTCGCTGTaGTTTAAGCACAGAGATGTGGCCGTTTTTCTCTCCCTGTCTGCC | + |
|
Preference number: 5 (lower is better) Translates to: IKALNCFIMDAGTSL*FKHRDVAVFLSLSA Trigger: GGCAGACAGGGAGAGAAAAACGGCCACATCTCTGTGCTTAAAGCACAGCGAAGTACCTGCATCCATGATGAAGCAGTTTAATGCTTTAAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000152889.9 ENSMUST00000154279.3 ENSMUST00000171708.2 ENSMUST00000173659.2 |
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| CDS-3UTR CAA 90 bp | AGACAGAGACGTGATGGTCCACTGTCCAACTCTACTTGGTTTTGTATTTTGGTGTCCTGCTTACCCTTCTaGCTTCTCACAGTCAGGTTT | + |
|
Preference number: 5 (lower is better) Translates to: RQRRDGPLSNSTWFCILVSCLPF*LLTVRF Trigger: AAACCTGACTGTGAGAAGCAAGAAGGGTAAGCAGGA...CACCAAAATACAAAACCAAGTAGAGTTGGACAGTGGACCATCACGTCTCTGTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| CDS-3UTR CAA 90 bp | ATGGTCCACTGTCCAACTCTACTTGGTTTTGTATTTTGGTGGACAGAGAGCACTTTGAGTGGTTTAGCTTaGTCCTGCTTACCCTTCTTG | + |
|
Preference number: 5 (lower is better) Translates to: MVHCPTLLGFVFWWTESTLSGLA*SCLPFL Trigger: CAAGAAGGGTAAGCAGGACAAAGCTAAACCACTCAA...AGTGCTCTCTGTCCACCAAAATACAAAACCAAGTAGAGTTGGACAGTGGACCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| CDS-3UTR CAA 90 bp | TGTAATCTTGTTGAGTCAGTCAGCCTGCAGTCTCTTCTAACTTATCATGTCCTTAGGACATGGCTGCTGTaGAGTGGTTTAGCTTTGTCC | + |
|
Preference number: 5 (lower is better) Translates to: CNLVESVSLQSLLTYHVLRTWLL*SGLALS Trigger: GGACAAAGCTAAACCACTCAACAGCAGCCATGTCCT...AAGGACATGATAAGTTAGAAGAGACTGCAGGCTGACTGACTCAACAAGATTACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| CDS-3UTR CAA 90 bp | TCTAGTATTTTTCCGTGTGTGGTCACACTGACAAGATTCCTCCTTACCAAGGTATCCCCCTCCTGCTTCTaGAGAGTTCCTTTATTCTTC | + |
|
Preference number: 5 (lower is better) Translates to: SSIFPCVVTLTRFLLTKVSPSCF*RVPLFF Trigger: GAAGAATAAAGGAACTCTCAAGAAGCAGGAGGGGGA...TACCTTGGTAAGGAGGAATCTTGTCAGTGTGACCACACACGGAAAAATACTAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| CDS-3UTR CAA 90 bp | TATCATGTCCTTTCCCATCCCACTGTGGCCTCTAGTATTTTTCCGTGTGTGGTCTCTGTAGGTTATTTCTaGTTTTGCTCTGGAAGCTTT | + |
|
Preference number: 5 (lower is better) Translates to: YHVLSHPTVASSIFPCVVSVGYF*FCSGSF Trigger: AAAGCTTCCAGAGCAAAACAAGAAATAACCTACAGA...GACCACACACGGAAAAATACTAGAGGCCACAGTGGGATGGGAAAGGACATGATA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| CDS-3UTR CAA 90 bp | TGTAATCTTGTTGAGTCAGTCAGCCTGCAGTCTCTTCTAACTTATCATGTCCTTCAGGATAAAGGATTCTaGGCTGAAAGCCTTCGTCTT | + |
|
Preference number: 5 (lower is better) Translates to: CNLVESVSLQSLLTYHVLQDKGF*AESLRL Trigger: AAGACGAAGGCTTTCAGCCAAGAATCCTTTATCCTG...AAGGACATGATAAGTTAGAAGAGACTGCAGGCTGACTGACTCAACAAGATTACA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| CDS GCA 90 bp | ATCTCTGCAAACATCACCTCTTGCATTTCCATTAAAGCATTAAACTaGTTCATCATGGATGCAGGTACTTCGCTGTGCTTTAAGCACAGA | + |
|
Preference number: 5 (lower is better) Translates to: ISANITSCISIKALN*FIMDAGTSLCFKHR Trigger: TCTGTGCTTAAAGCACAGCGAAGTACCTGCATCCATGATGAAGCAGTTTAATGCTTTAATGGAAATGCAAGAGGTGATGTTTGCAGAGAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000152889.9 ENSMUST00000154279.3 ENSMUST00000171708.2 ENSMUST00000173659.2 |
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| CDS CCA 90 bp | TTTATTCTTCCGGTCCAGTGTTTCTTCTTTGTAAGTCTTCACCTCTaGACTAGCAACTTCTACCTCTTTGATGAACAGGAAGCTCAAACT | + |
|
Preference number: 5 (lower is better) Translates to: FILPVQCFFFVSLHL*TSNFYLFDEQEAQT Trigger: AGTTTGAGCTTCCTGTTCATCAAAGAGGTAGAAGTTGCTAGTCCAGAGGTGAAGACTTACAAAGAAGAAACACTGGACCGGAAGAATAAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000154279.3 ENSMUST00000173659.2 |
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| CDS-3UTR CAA 90 bp | ACTGTCCAACTCTACTTGGTTTTGTATTTTGGTGGACAGAGAGCACTCCAGGTTAGGTTATTTCTTGTTTaGCTCTGGAAGCTTTTAGGA | + |
|
Preference number: 5 (lower is better) Translates to: TVQLYLVLYFGGQRALQVRLFLV*LWKLLG Trigger: TCCTAAAAGCTTCCAGAGCAAAACAAGAAATAACCT...AACCTGGAGTGCTCTCTGTCCACCAAAATACAAAACCAAGTAGAGTTGGACAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000154279.3 |
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| CDS CCA 72 bp | GCGTGGCTGCCGAGAAGTCAGCAGCCAGCCTTAGGGTaGCTCCGGCGCCTCCTTCGGGCGGGCTCTCTTTGG | + |
|
Preference number: 6 (lower is better) Translates to: AWLPRSQQPALG*LRRLLRAGSLW Trigger: CCAAAGAGAGCCCGCCCGAAGGAGGCGCCGGAGCCACCCTAAGGCTGGCTGCTGACTTCTCGGCAGCCACGC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000154279.3 ENSMUST00000173659.2 |
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| CDS TCA 72 bp | CGGCGCCTCCTTCGGGCGGGCTCTCTTTGGGGGCCTTaGGACGATTCTCTTCACTCTGACAGCTGGCTTCTC | + |
|
Preference number: 6 (lower is better) Translates to: RRLLRAGSLWGP*DDSLHSDSWLL Trigger: GAGAAGCCAGCTGTCAGAGTGAAGAGAATCGTCTCAAGGCCCCCAAAGAGAGCCCGCCCGAAGGAGGCGCCG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000154279.3 ENSMUST00000173659.2 |
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| CDS GCA 72 bp | TCTTCCAGTCTACAAGGCTGCTGCTCTCTCCACACCTaGCATGTTCCCCACGCAGGGCTTCTCCCCCTCTCT | + |
|
Preference number: 6 (lower is better) Translates to: SSSLQGCCSLHT*HVPHAGLLPLS Trigger: AGAGAGGGGGAGAAGCCCTGCGTGGGGAACATGGCAGGTGTGGAGAGAGCAGCAGCCTTGTAGACTGGAAGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000154279.3 ENSMUST00000173659.2 |
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| CDS CCA 72 bp | GGCTCCAACTCCTTTTCTTTCAGAAGGCGGAAGACTTaGCTCCACTGCCTGCCGACATCCAGCGTGGCTGCC | + |
|
Preference number: 6 (lower is better) Translates to: GSNSFSFRRRKT*LHCLPTSSVAA Trigger: GGCAGCCACGCTGGATGTCGGCAGGCAGTGGAGCCAAGTCTTCCGCCTTCTGAAAGAAAAGGAGTTGGAGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000154279.3 ENSMUST00000173659.2 |
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| CDS CAA 90 bp | CTGCAGCTCAGGCTCCAACTCCTTTTCTTTCAGAAGGCGGAAGACTaGGCTCCACTGCCTGCCGACATCCAGCGTGGCTGCCGAGAAGTC | + |
|
Preference number: 6 (lower is better) Translates to: LQLRLQLLFFQKAED*APLPADIQRGCREV Trigger: GACTTCTCGGCAGCCACGCTGGATGTCGGCAGGCAGTGGAGCCAAGTCTTCCGCCTTCTGAAAGAAAAGGAGTTGGAGCCTGAGCTGCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000154279.3 ENSMUST00000173659.2 |
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| CDS CAA 72 bp | AGGCTCCAACTCCTTTTCTTTCAGAAGGCGGAAGACTaGGCTCCACTGCCTGCCGACATCCAGCGTGGCTGC | + |
|
Preference number: 6 (lower is better) Translates to: RLQLLFFQKAED*APLPADIQRGC Trigger: GCAGCCACGCTGGATGTCGGCAGGCAGTGGAGCCAAGTCTTCCGCCTTCTGAAAGAAAAGGAGTTGGAGCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000154279.3 ENSMUST00000173659.2 |
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| CDS GCA 72 bp | GCTTCTCATTCGCATTCTTCCAGTCTACAAGGCTGCTaGTCTCTCCACACCTGCCATGTTCCCCACGCAGGG | + |
|
Preference number: 6 (lower is better) Translates to: ASHSHSSSLQGC*SLHTCHVPHAG Trigger: CCCTGCGTGGGGAACATGGCAGGTGTGGAGAGAGCAGCAGCCTTGTAGACTGGAAGAATGCGAATGAGAAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000154279.3 ENSMUST00000173659.2 |
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| CDS CAA 72 bp | CTCCCTGTCTGCCGACAGCTTTTCTTTCCGCTCCTTTaGAAGCCTGGCTGCTTTGGACTGCACGCCCGACAT | + |
|
Preference number: 6 (lower is better) Translates to: LPVCRQLFFPLL*KPGCFGLHARH Trigger: ATGTCGGGCGTGCAGTCCAAAGCAGCCAGGCTTCAAAAGGAGCGGAAAGAAAAGCTGTCGGCAGACAGGGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000152889.9 ENSMUST00000154279.3 ENSMUST00000171708.2 ENSMUST00000173659.2 |
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| CDS GCA 72 bp | CTGGCTTCTCATTCGCATTCTTCCAGTCTACAAGGCTaGTGCTCTCTCCACACCTGCCATGTTCCCCACGCA | + |
|
Preference number: 6 (lower is better) Translates to: LASHSHSSSLQG*CSLHTCHVPHA Trigger: TGCGTGGGGAACATGGCAGGTGTGGAGAGAGCAGCAGCCTTGTAGACTGGAAGAATGCGAATGAGAAGCCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000154279.3 ENSMUST00000173659.2 |
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| CDS GCA 72 bp | AGCACTCCTGGTGATTTTCCCAACACCACATTCTCCTaGCACTACAAGGCCCTGAAAGGCCGAGCCCAGAAC | + |
|
Preference number: 6 (lower is better) Translates to: STPGDFPNTTFS*HYKALKGRAQN Trigger: GTTCTGGGCTCGGCCTTTCAGGGCCTTGTAGTGGCAGGAGAATGTGGTGTTGGGAAAATCACCAGGAGTGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173659.2 |
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| CDS CCA 72 bp | GGCCCTGAAAGGCCGAGCCCAGAACTTCGCTTCGTATaGAGGCTACCTCCTTCTTCCCCATTTCTGAGTTCT | + |
|
Preference number: 6 (lower is better) Translates to: GPERPSPELRFV*RLPPSSPFLSS Trigger: AGAACTCAGAAATGGGGAAGAAGGAGGTAGCCTCCATACGAAGCGAAGTTCTGGGCTCGGCCTTTCAGGGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173659.2 |
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| CDS CAA 90 bp | AGCCTTTCTTTATCAACGATCTCCCTGGCTAACTGCATTGTATCCTaGGTCAGTCCCTCCACGGCATCTTCCTGTTCGCTCACCCTGGCC | + |
|
Preference number: 6 (lower is better) Translates to: SLSLSTISLANCIVS*VSPSTASSCSLTLA Trigger: GGCCAGGGTGAGCGAACAGGAAGATGCCGTGGAGGGACTGACCAAGGATACAATGCAGTTAGCCAGGGAGATCGTTGATAAAGAAAGGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000154279.3 ENSMUST00000173659.2 |
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| CDS TCA 72 bp | GTGAGTCTGTGCTCATCCACTGAATTAGGGACACGATaGGCGCTGACAATCTCGAGGCTCTGGTCTTCTAGC | + |
|
Preference number: 6 (lower is better) Translates to: VSLCSSTELGTR*ALTISRLWSSS Trigger: GCTAGAAGACCAGAGCCTCGAGATTGTCAGCGCTCATCGTGTCCCTAATTCAGTGGATGAGCACAGACTCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000154279.3 ENSMUST00000173659.2 |
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| CDS GCA 72 bp | GGCTTTGGCCTTTCCGAGATTGCATCTCCTTCTTGCTaGCCTATCCGCTCTTCCAAATGCTTCACCCAAGGT | + |
|
Preference number: 6 (lower is better) Translates to: GFGLSEIASPSC*PIRSSKCFTQG Trigger: ACCTTGGGTGAAGCATTTGGAAGAGCGGATAGGGCAGCAAGAAGGAGATGCAATCTCGGAAAGGCCAAAGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000152889.9 ENSMUST00000154279.3 ENSMUST00000171708.2 ENSMUST00000173659.2 |
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| CDS CCA 72 bp | TCAGTCCCTCCACGGCATCTTCCTGTTCGCTCACCCTaGCCTCAATCGTGCAAGCTAAGGAATTCAGATCAT | + |
|
Preference number: 6 (lower is better) Translates to: SVPPRHLPVRSP*PQSCKLRNSDH Trigger: ATGATCTGAATTCCTTAGCTTGCACGATTGAGGCCAGGGTGAGCGAACAGGAAGATGCCGTGGAGGGACTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000154279.3 ENSMUST00000173659.2 |
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| CDS CAA 72 bp | CTTCCACTTTCTCTCCTGGCTTTGGCCTTTCCGAGATaGCATCTCCTTCTTGCTGCCCTATCCGCTCTTCCA | + |
|
Preference number: 6 (lower is better) Translates to: LPLSLLALAFPR*HLLLAALSALP Trigger: TGGAAGAGCGGATAGGGCAGCAAGAAGGAGATGCAATCTCGGAAAGGCCAAAGCCAGGAGAGAAAGTGGAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000152889.9 ENSMUST00000154279.3 ENSMUST00000171708.2 ENSMUST00000173659.2 |
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| CDS TCA 72 bp | GTCAAATATAAGGTTAGACACGGCATCCCGATCCTTTaGGTAGAAGCAGCAGCTGCTCCTCCCTCCTGGCAT | + |
|
Preference number: 6 (lower is better) Translates to: VKYKVRHGIPIL*VEAAAAPPSWH Trigger: ATGCCAGGAGGGAGGAGCAGCTGCTGCTTCTACTCAAAGGATCGGGATGCCGTGTCTAACCTTATATTTGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000154279.3 ENSMUST00000173659.2 |
||
| CDS GCA 72 bp | TTCCACTTTCTCTCCTGGCTTTGGCCTTTCCGAGATTaGATCTCCTTCTTGCTGCCCTATCCGCTCTTCCAA | + |
|
Preference number: 6 (lower is better) Translates to: FHFLSWLWPFRD*ISFLLPYPLFQ Trigger: TTGGAAGAGCGGATAGGGCAGCAAGAAGGAGATGCAATCTCGGAAAGGCCAAAGCCAGGAGAGAAAGTGGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000152889.9 ENSMUST00000154279.3 ENSMUST00000171708.2 ENSMUST00000173659.2 |
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| CDS CCA 72 bp | ACGATTCTCTTCACTCTGACAGCTGGCTTCTCGGGCTaGCTTCTCATTCGCATTCTTCCAGTCTACAAGGCT | + |
|
Preference number: 6 (lower is better) Translates to: TILFTLTAGFSG*LLIRILPVYKA Trigger: AGCCTTGTAGACTGGAAGAATGCGAATGAGAAGCCAGCCCGAGAAGCCAGCTGTCAGAGTGAAGAGAATCGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000154279.3 ENSMUST00000173659.2 |
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| CDS CCA 72 bp | TATCAACGATCTCCCTGGCTAACTGCATTGTATCCTTaGTCAGTCCCTCCACGGCATCTTCCTGTTCGCTCA | + |
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Preference number: 6 (lower is better) Translates to: YQRSPWLTALYP*SVPPRHLPVRS Trigger: TGAGCGAACAGGAAGATGCCGTGGAGGGACTGACCAAGGATACAATGCAGTTAGCCAGGGAGATCGTTGATA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000154279.3 ENSMUST00000173659.2 |
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| CDS CAA 72 bp | CTTCGGTTTCAAGGATCAAGTCTGCTTCTTTGGCTGTaGGCTCTTCTGTTTGCGGCACCTTGTACCTCCCCT | + |
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Preference number: 6 (lower is better) Translates to: LRFQGSSLLLWL*ALLFAAPCTSP Trigger: AGGGGAGGTACAAGGTGCCGCAAACAGAAGAGCCAACAGCCAAAGAAGCAGACTTGATCCTTGAAACCGAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000154279.3 ENSMUST00000173659.2 |
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| CDS CAA 72 bp | TTATCAACGATCTCCCTGGCTAACTGCATTGTATCCTaGGTCAGTCCCTCCACGGCATCTTCCTGTTCGCTC | + |
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Preference number: 6 (lower is better) Translates to: LSTISLANCIVS*VSPSTASSCSL Trigger: GAGCGAACAGGAAGATGCCGTGGAGGGACTGACCAAGGATACAATGCAGTTAGCCAGGGAGATCGTTGATAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000154279.3 ENSMUST00000173659.2 |
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| CDS CAA 90 bp | TCTCTCTCAGCCTTTCTTTATCAACGATCTCCCTGGCTAACTGCATaGTATCCTTGGTCAGTCCCTCCACGGCATCTTCCTGTTCGCTCA | + |
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Preference number: 6 (lower is better) Translates to: SLSAFLYQRSPWLTA*YPWSVPPRHLPVRS Trigger: TGAGCGAACAGGAAGATGCCGTGGAGGGACTGACCAAGGATACAATGCAGTTAGCCAGGGAGATCGTTGATAAAGAAAGGCTGAGAGAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000154279.3 ENSMUST00000173659.2 |
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| CDS GCA 72 bp | TCCCCATCACACTTAAATGCCAACTTCACGGAGCACTaGAGCTCAGGCTCCAACTCCTTTTCTTTCAGAAGG | + |
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Preference number: 6 (lower is better) Translates to: SPSHLNANFTEH*SSGSNSFSFRR Trigger: CCTTCTGAAAGAAAAGGAGTTGGAGCCTGAGCTGCAGTGCTCCGTGAAGTTGGCATTTAAGTGTGATGGGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000154279.3 ENSMUST00000173659.2 |
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| CDS GCA 72 bp | CGGCATCTTCCTGTTCGCTCACCCTGGCCTCAATCGTaGAAGCTAAGGAATTCAGATCATCCAGTGAACTTT | + |
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Preference number: 6 (lower is better) Translates to: RHLPVRSPWPQS*KLRNSDHPVNF Trigger: AAAGTTCACTGGATGATCTGAATTCCTTAGCTTGCACGATTGAGGCCAGGGTGAGCGAACAGGAAGATGCCG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000154279.3 ENSMUST00000173659.2 |
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| CDS CCA 72 bp | ATGCAGGTACTTCGCTGTGCTTTAAGCACAGAGATGTaGCCGTTTTTCTCTCCCTGTCTGCCGACAGCTTTT | + |
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Preference number: 6 (lower is better) Translates to: MQVLRCALSTEM*PFFSPCLPTAF Trigger: AAAAGCTGTCGGCAGACAGGGAGAGAAAAACGGCCACATCTCTGTGCTTAAAGCACAGCGAAGTACCTGCAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000152889.9 ENSMUST00000154279.3 ENSMUST00000171708.2 ENSMUST00000173659.2 |
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| CDS CCA 72 bp | CCCTCTCTCTCAGCCTTTCTTTATCAACGATCTCCCTaGCTAACTGCATTGTATCCTTGGTCAGTCCCTCCA | + |
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Preference number: 6 (lower is better) Translates to: PSLSAFLYQRSP*LTALYPWSVPP Trigger: TGGAGGGACTGACCAAGGATACAATGCAGTTAGCCAGGGAGATCGTTGATAAAGAAAGGCTGAGAGAGAGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000154279.3 ENSMUST00000173659.2 |
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| CDS CAA 72 bp | GCCTTTCTTTATCAACGATCTCCCTGGCTAACTGCATaGTATCCTTGGTCAGTCCCTCCACGGCATCTTCCT | + |
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Preference number: 6 (lower is better) Translates to: AFLYQRSPWLTA*YPWSVPPRHLP Trigger: AGGAAGATGCCGTGGAGGGACTGACCAAGGATACAATGCAGTTAGCCAGGGAGATCGTTGATAAAGAAAGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000154279.3 ENSMUST00000173659.2 |
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| CDS CCA 72 bp | GCTTCTCCCCCTCTCTCTAGTGATGATTTCAGGACATaGCTGCTGTTGAGTGGTTTAGCTTTGTCCTGCTTA | + |
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Preference number: 6 (lower is better) Translates to: ASPPLSSDDFRT*LLLSGLALSCL Trigger: TAAGCAGGACAAAGCTAAACCACTCAACAGCAGCCATGTCCTGAAATCATCACTAGAGAGAGGGGGAGAAGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000154279.3 ENSMUST00000173659.2 |
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| CDS CCA 72 bp | GGTTTTCTTTCTCTGGAATCCCTATCACTCGGATGTTaGAGCTTCGAAACCTATCTTCCCTCTCTCTCAGCC | + |
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Preference number: 6 (lower is better) Translates to: GFLSLESLSLGC*SFETYLPSLSA Trigger: GGCTGAGAGAGAGGGAAGATAGGTTTCGAAGCTCCAACATCCGAGTGATAGGGATTCCAGAGAAAGAAAACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000154279.3 ENSMUST00000173659.2 |
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| CDS CAA 72 bp | GATCAAGTCTGCTTCTTTGGCTGTTGGCTCTTCTGTTaGCGGCACCTTGTACCTCCCCTTTTCTATGTTCGT | + |
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Preference number: 6 (lower is better) Translates to: DQVCFFGCWLFC*RHLVPPLFYVR Trigger: ACGAACATAGAAAAGGGGAGGTACAAGGTGCCGCAAACAGAAGAGCCAACAGCCAAAGAAGCAGACTTGATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000154279.3 ENSMUST00000173659.2 |
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| CDS CAA 72 bp | CGGTTTTCTTTCTCTGGAATCCCTATCACTCGGATGTaGGAGCTTCGAAACCTATCTTCCCTCTCTCTCAGC | + |
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Preference number: 6 (lower is better) Translates to: RFSFSGIPITRM*ELRNLSSLSLS Trigger: GCTGAGAGAGAGGGAAGATAGGTTTCGAAGCTCCAACATCCGAGTGATAGGGATTCCAGAGAAAGAAAACCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000154279.3 ENSMUST00000173659.2 |
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| CDS CAA 90 bp | CCTCTCTTGAAGTTTTCTTCGGTTTCAAGGATCAAGTCTGCTTCTTaGGCTGTTGGCTCTTCTGTTTGCGGCACCTTGTACCTCCCCTTT | + |
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Preference number: 6 (lower is better) Translates to: PLLKFSSVSRIKSAS*AVGSSVCGTLYLPF Trigger: AAAGGGGAGGTACAAGGTGCCGCAAACAGAAGAGCCAACAGCCAAAGAAGCAGACTTGATCCTTGAAACCGAAGAAAACTTCAAGAGAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000154279.3 ENSMUST00000173659.2 |
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| CDS CAA 90 bp | CCGTTCTCCCGGTTTTCTTTCTCTGGAATCCCTATCACTCGGATGTaGGAGCTTCGAAACCTATCTTCCCTCTCTCTCAGCCTTTCTTTA | + |
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Preference number: 6 (lower is better) Translates to: PFSRFSFSGIPITRM*ELRNLSSLSLSLSL Trigger: TAAAGAAAGGCTGAGAGAGAGGGAAGATAGGTTTCGAAGCTCCAACATCCGAGTGATAGGGATTCCAGAGAAAGAAAACCGGGAGAACGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000154279.3 ENSMUST00000173659.2 |
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| CDS GCA 72 bp | AGGACATGGCTGCTGTTGAGTGGTTTAGCTTTGTCCTaGTTACCCTTCTTGCTTCTCACAGTCAGGTTTTCA | + |
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Preference number: 6 (lower is better) Translates to: RTWLLLSGLALS*LPFLLLTVRFS Trigger: TGAAAACCTGACTGTGAGAAGCAAGAAGGGTAAGCAGGACAAAGCTAAACCACTCAACAGCAGCCATGTCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000152889.9 ENSMUST00000154279.3 ENSMUST00000173659.2 |
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| CDS GCA 72 bp | ATCAAGTCTGCTTCTTTGGCTGTTGGCTCTTCTGTTTaGGGCACCTTGTACCTCCCCTTTTCTATGTTCGTT | + |
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Preference number: 6 (lower is better) Translates to: IKSASLAVGSSV*GTLYLPFSMFV Trigger: AACGAACATAGAAAAGGGGAGGTACAAGGTGCCGCAAACAGAAGAGCCAACAGCCAAAGAAGCAGACTTGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000154279.3 ENSMUST00000173659.2 |
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| CDS CCA 72 bp | AGTTTTCTTCGGTTTCAAGGATCAAGTCTGCTTCTTTaGCTGTTGGCTCTTCTGTTTGCGGCACCTTGTACC | + |
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Preference number: 6 (lower is better) Translates to: SFLRFQGSSLLL*LLALLFAAPCT Trigger: GGTACAAGGTGCCGCAAACAGAAGAGCCAACAGCCAAAGAAGCAGACTTGATCCTTGAAACCGAAGAAAACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000154279.3 ENSMUST00000173659.2 |
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| CDS CAA 72 bp | CCTCTCTCTAGTGATGATTTCAGGACATGGCTGCTGTaGAGTGGTTTAGCTTTGTCCTGCTTACCCTTCTTG | + |
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Preference number: 6 (lower is better) Translates to: PLSSDDFRTWLL*SGLALSCLPFL Trigger: CAAGAAGGGTAAGCAGGACAAAGCTAAACCACTCAACAGCAGCCATGTCCTGAAATCATCACTAGAGAGAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000152889.9 ENSMUST00000154279.3 ENSMUST00000173659.2 |
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| CDS CAA 90 bp | TCTAGTGATGATTTCAGGACATGGCTGCTGTTGAGTGGTTTAGCTTaGTCCTGCTTACCCTTCTTGCTTCTCACAGTCAGGTTTTCAGTG | + |
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Preference number: 6 (lower is better) Translates to: SSDDFRTWLLLSGLA*SCLPFLLLTVRFSV Trigger: CACTGAAAACCTGACTGTGAGAAGCAAGAAGGGTAAGCAGGACAAAGCTAAACCACTCAACAGCAGCCATGTCCTGAAATCATCACTAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000152889.9 ENSMUST00000154279.3 ENSMUST00000173659.2 |
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| CDS GCA 72 bp | TTAAACTGCTTCATCATGGATGCAGGTACTTCGCTGTaGTTTAAGCACAGAGATGTGGCCGTTTTTCTCTCC | + |
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Preference number: 6 (lower is better) Translates to: LNCFIMDAGTSL*FKHRDVAVFLS Trigger: GGAGAGAAAAACGGCCACATCTCTGTGCTTAAAGCACAGCGAAGTACCTGCATCCATGATGAAGCAGTTTAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000152889.9 ENSMUST00000154279.3 ENSMUST00000171708.2 ENSMUST00000173659.2 |
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| CDS CAA 72 bp | AAGTTTTCTTCGGTTTCAAGGATCAAGTCTGCTTCTTaGGCTGTTGGCTCTTCTGTTTGCGGCACCTTGTAC | + |
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Preference number: 6 (lower is better) Translates to: KFSSVSRIKSAS*AVGSSVCGTLY Trigger: GTACAAGGTGCCGCAAACAGAAGAGCCAACAGCCAAAGAAGCAGACTTGATCCTTGAAACCGAAGAAAACTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000154279.3 ENSMUST00000173659.2 |
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| CDS CAA 72 bp | TCTTTCCCGAAGCTCGTTTCTTCTTCCTCCTTCATTTaGCGGGAACACATCTTTCAGCAACTCTCTCAGAAA | + |
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Preference number: 6 (lower is better) Translates to: SFPKLVSSSSFI*REHIFQQLSQK Trigger: TTTCTGAGAGAGTTGCTGAAAGATGTGTTCCCGCAAAATGAAGGAGGAAGAAGAAACGAGCTTCGGGAAAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000154279.3 ENSMUST00000173659.2 |
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| CDS CAA 90 bp | TTTACCCAATCTTTCCCGAAGCTCGTTTCTTCTTCCTCCTTCATTTaGCGGGAACACATCTTTCAGCAACTCTCTCAGAAAAGGCTTTCT | + |
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Preference number: 6 (lower is better) Translates to: FTQSFPKLVSSSSFI*REHIFQQLSQKRLS Trigger: AGAAAGCCTTTTCTGAGAGAGTTGCTGAAAGATGTGTTCCCGCAAAATGAAGGAGGAAGAAGAAACGAGCTTCGGGAAAGATTGGGTAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000154279.3 ENSMUST00000173659.2 |
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| CDS TCA 72 bp | AGTCTGGGAAGCCGTCTTTCTGTTTACTTCTTCCTCTaGTTCAGAATCTACTACCAAACTAATGAAGCCAAT | + |
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Preference number: 6 (lower is better) Translates to: SLGSRLSVYFFL*FRIYYQTNEAN Trigger: ATTGGCTTCATTAGTTTGGTAGTAGATTCTGAATCAGAGGAAGAAGTAAACAGAAAGACGGCTTCCCAGACT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000154279.3 ENSMUST00000173659.2 |
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