Pregenerated sensors for KXD1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000055553Ensembl transcript IDs: ENSMUST00000093456.12, ENSMUST00000117580.8, ENSMUST00000118850.8, ENSMUST00000121623.8, ENSMUST00000132867.2, ENSMUST00000137610.3, ENSMUST00000138260.8, ENSMUST00000155677.8
Found 68 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCTCGGCCCTCCTGTGCCCACCTAAGGTGTGGGGGACAGACGATCTaGCTTTGGTCTCTGGGGACCTCAGAAGCACTGTTCAAAGCTGGC | + |
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Preference number: 1 (lower is better) Translates to: ARPSCAHLRCGGQTI*LWSLGTSEALFKAG Trigger: GCCAGCTTTGAACAGTGCTTCTGAGGTCCCCAGAGACCAAAGCCAGATCGTCTGTCCCCCACACCTTAGGTGGGCACAGGAGGGCCGAGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000093456.12 ENSMUST00000118850.8 |
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| 3UTR CCA 90 bp | CCCTCCTGTGCCCACCTAAGGTGTGGGGGACAGACGATCTGGCTTTaGTCTCTGGGGACCTCAGAAGCACTGTTCAAAGCTGGCCCAAGC | + |
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Preference number: 1 (lower is better) Translates to: PSCAHLRCGGQTIWL*SLGTSEALFKAGPS Trigger: GCTTGGGCCAGCTTTGAACAGTGCTTCTGAGGTCCCCAGAGACCAAAGCCAGATCGTCTGTCCCCCACACCTTAGGTGGGCACAGGAGGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000093456.12 ENSMUST00000118850.8 |
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| 3UTR CCA 90 bp | GATCTGGCTTTGGTCTCTGGGGACCTCAGAAGCACTGTTCAAAGCTaGCCCAAGCTGAGCTCAAGGTTACCTGTACTCAGCCCCACCTGG | + |
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Preference number: 1 (lower is better) Translates to: DLALVSGDLRSTVQS*PKLSSRLPVLSPTW Trigger: CCAGGTGGGGCTGAGTACAGGTAACCTTGAGCTCAGCTTGGGCCAGCTTTGAACAGTGCTTCTGAGGTCCCCAGAGACCAAAGCCAGATC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000093456.12 ENSMUST00000118850.8 |
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| 3UTR TCA 90 bp | ACCCTCTGGGATGTCTTAGACCATGTCTTGAAAACAAAGCAAAGCTaGATGGGGGTAGCACATGCCTTTAATCCCAGCACTCAGGAGGCA | + |
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Preference number: 1 (lower is better) Translates to: TLWDVLDHVLKTKQS*MGVAHAFNPSTQEA Trigger: TGCCTCCTGAGTGCTGGGATTAAAGGCATGTGCTACCCCCATTCAGCTTTGCTTTGTTTTCAAGACATGGTCTAAGACATCCCAGAGGGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000155677.8 |
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| 3UTR CAA 90 bp | GCCCTCCTGTGCCCACCTAAGGTGTGGGGGACAGACGATCTGGCTTaGGTCTCTGGGGACCTCAGAAGCACTGTTCAAAGCTGGCCCAAG | + |
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Preference number: 2 (lower is better) Translates to: ALLCPPKVWGTDDLA*VSGDLRSTVQSWPK Trigger: CTTGGGCCAGCTTTGAACAGTGCTTCTGAGGTCCCCAGAGACCAAAGCCAGATCGTCTGTCCCCCACACCTTAGGTGGGCACAGGAGGGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000093456.12 ENSMUST00000118850.8 |
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| 3UTR-3UTR CCA 90 bp | AGGTGTGGGGGACAGACGATCTGGCTTTGGTCTCTGGGGACCTCAGAAGCACTGGTACTCAGCCCCACCTaGGGCACATGTGCTGGCATA | + |
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Preference number: 2 (lower is better) Translates to: RCGGQTIWLWSLGTSEALVLSPT*GTCAGI Trigger: TATGCCAGCACATGTGCCCCAGGTGGGGCTGAGTAC...CAGTGCTTCTGAGGTCCCCAGAGACCAAAGCCAGATCGTCTGTCCCCCACACCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000093456.12 ENSMUST00000118850.8 |
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| 3UTR-3UTR CCA 90 bp | GTCAGCAGCTGCCAGTGGGTAGAAACAAGCTCGGCCCTCCTGTGCCCACCTAAGCAGACGATCTGGCTTTaGTCTCTGGGGACCTCAGAA | + |
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Preference number: 2 (lower is better) Translates to: VSSCQWVETSSALLCPPKQTIWL*SLGTSE Trigger: TTCTGAGGTCCCCAGAGACCAAAGCCAGATCGTCTG...CTTAGGTGGGCACAGGAGGGCCGAGCTTGTTTCTACCCACTGGCAGCTGCTGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093456.12 ENSMUST00000118850.8 |
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| 3UTR-3UTR CCA 90 bp | AGGTGTGGGGGACAGACGATCTGGCTTTGGTCTCTGGGGACCTCAGAAGCACTGCTGCCTATGAAAGAATaGAGCAGCCAAGCTGACCGA | + |
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Preference number: 2 (lower is better) Translates to: RCGGQTIWLWSLGTSEALLPMKE*SSQADR Trigger: TCGGTCAGCTTGGCTGCTCCATTCTTTCATAGGCAG...CAGTGCTTCTGAGGTCCCCAGAGACCAAAGCCAGATCGTCTGTCCCCCACACCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000093456.12 ENSMUST00000118850.8 |
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| 3UTR-3UTR CCA 90 bp | TCTGGCTTTGGTCTCTGGGGACCTCAGAAGCACTGTTCAAAGCTGGCCCAAGCTCTGCCTATGAAAGAATaGAGCAGCCAAGCTGACCGA | + |
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Preference number: 2 (lower is better) Translates to: SGFGLWGPQKHCSKLAQALPMKE*SSQADR Trigger: TCGGTCAGCTTGGCTGCTCCATTCTTTCATAGGCAG...AGCTTGGGCCAGCTTTGAACAGTGCTTCTGAGGTCCCCAGAGACCAAAGCCAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093456.12 ENSMUST00000118850.8 |
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| 3UTR GCA 72 bp | AGCTGCCAGTGGGTAGAAACAAGCTCGGCCCTCCTGTaGCCACCTAAGGTGTGGGGGACAGACGATCTGGCT | + |
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Preference number: 3 (lower is better) Translates to: SCQWVETSSALL*PPKVWGTDDLA Trigger: AGCCAGATCGTCTGTCCCCCACACCTTAGGTGGGCACAGGAGGGCCGAGCTTGTTTCTACCCACTGGCAGCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000093456.12 ENSMUST00000118850.8 |
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| 3UTR CCA 72 bp | GAAACAAGCTCGGCCCTCCTGTGCCCACCTAAGGTGTaGGGGACAGACGATCTGGCTTTGGTCTCTGGGGAC | + |
|
Preference number: 3 (lower is better) Translates to: ETSSALLCPPKV*GTDDLALVSGD Trigger: GTCCCCAGAGACCAAAGCCAGATCGTCTGTCCCCCACACCTTAGGTGGGCACAGGAGGGCCGAGCTTGTTTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000093456.12 ENSMUST00000118850.8 |
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| 3UTR TCA 72 bp | GGGACCTCAGAAGCACTGTTCAAAGCTGGCCCAAGCTaGGCTCAAGGTTACCTGTACTCAGCCCCACCTGGG | + |
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Preference number: 3 (lower is better) Translates to: GTSEALFKAGPS*AQGYLYSAPPG Trigger: CCCAGGTGGGGCTGAGTACAGGTAACCTTGAGCTCAGCTTGGGCCAGCTTTGAACAGTGCTTCTGAGGTCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093456.12 ENSMUST00000118850.8 |
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| 3UTR CCA 72 bp | TCCTGTGCCCACCTAAGGTGTGGGGGACAGACGATCTaGCTTTGGTCTCTGGGGACCTCAGAAGCACTGTTC | + |
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Preference number: 3 (lower is better) Translates to: SCAHLRCGGQTI*LWSLGTSEALF Trigger: GAACAGTGCTTCTGAGGTCCCCAGAGACCAAAGCCAGATCGTCTGTCCCCCACACCTTAGGTGGGCACAGGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000093456.12 ENSMUST00000118850.8 |
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| 3UTR CCA 72 bp | AAGCTGAGCTCAAGGTTACCTGTACTCAGCCCCACCTaGGGCACATGTGCTGGCATAGGGAAGTCCTGCTCT | + |
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Preference number: 3 (lower is better) Translates to: KLSSRLPVLSPT*GTCAGIGKSCS Trigger: AGAGCAGGACTTCCCTATGCCAGCACATGTGCCCCAGGTGGGGCTGAGTACAGGTAACCTTGAGCTCAGCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093456.12 ENSMUST00000118850.8 |
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| 3UTR CCA 72 bp | GCCCACCTAAGGTGTGGGGGACAGACGATCTGGCTTTaGTCTCTGGGGACCTCAGAAGCACTGTTCAAAGCT | + |
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Preference number: 3 (lower is better) Translates to: AHLRCGGQTIWL*SLGTSEALFKA Trigger: AGCTTTGAACAGTGCTTCTGAGGTCCCCAGAGACCAAAGCCAGATCGTCTGTCCCCCACACCTTAGGTGGGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000093456.12 ENSMUST00000118850.8 |
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| 3UTR TCA 72 bp | GATGTCTTAGACCATGTCTTGAAAACAAAGCAAAGCTaGATGGGGGTAGCACATGCCTTTAATCCCAGCACT | + |
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Preference number: 3 (lower is better) Translates to: DVLDHVLKTKQS*MGVAHAFNPST Trigger: AGTGCTGGGATTAAAGGCATGTGCTACCCCCATTCAGCTTTGCTTTGTTTTCAAGACATGGTCTAAGACATC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000155677.8 |
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| CDS-3UTR TCA 90 bp | GCCCACCTAAGGTGTGGGGGACAGACGATCTGGCTTTGGTCTCTGGGGACCTCACCTCTGGGATGTGGCTaGAGGCCTCTGGGTGCTGCC | + |
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Preference number: 4 (lower is better) Translates to: AHLRCGGQTIWLWSLGTSPLGCG*RPLGAA Trigger: GGCAGCACCCAGAGGCCTTCAGCCACATCCCAGAGG...TGAGGTCCCCAGAGACCAAAGCCAGATCGTCTGTCCCCCACACCTTAGGTGGGC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000093456.12 ENSMUST00000118850.8 |
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| CDS-3UTR GCA 90 bp | GCCCACCTAAGGTGTGGGGGACAGACGATCTGGCTTTGGTCTCTGGGGACCTCACTGAAGGCCTCTGGGTaGTGCCGGGCTAGCTTCCCC | + |
|
Preference number: 4 (lower is better) Translates to: AHLRCGGQTIWLWSLGTSLKASG*CRASFP Trigger: GGGGAAGCTAGCCCGGCAGCACCCAGAGGCCTTCAG...TGAGGTCCCCAGAGACCAAAGCCAGATCGTCTGTCCCCCACACCTTAGGTGGGC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000093456.12 ENSMUST00000118850.8 |
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| CDS-3UTR GCA 90 bp | GAGCTCAAGGTTACCTGTACTCAGCCCCACCTGGGGCACATGTGCTGGCATAGGCAGGAGCCCGTGCTCTaGTCCGAGGTGGCGATGGTT | + |
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Preference number: 4 (lower is better) Translates to: ELKVTCTQPHLGHMCWHRQEPVL*SEVAMV Trigger: AACCATCGCCACCTCGGAGCAGAGCACGGGCTCCTG...CCTATGCCAGCACATGTGCCCCAGGTGGGGCTGAGTACAGGTAACCTTGAGCTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000093456.12 ENSMUST00000118850.8 |
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| CDS-3UTR CCA 90 bp | GTCAGCAGCTGCCAGTGGGTAGAAACAAGCTCGGCCCTCCTGTGCCCACCTAAGGAACCCTCTGGGATGTaGCTGAAGGCCTCTGGGTGC | + |
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Preference number: 4 (lower is better) Translates to: VSSCQWVETSSALLCPPKEPSGM*LKASGC Trigger: GCACCCAGAGGCCTTCAGCCACATCCCAGAGGGTTC...CTTAGGTGGGCACAGGAGGGCCGAGCTTGTTTCTACCCACTGGCAGCTGCTGAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093456.12 ENSMUST00000118850.8 |
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| CDS-3UTR GCA 90 bp | TCTGGCTTTGGTCTCTGGGGACCTCAGAAGCACTGTTCAAAGCTGGCCCAAGCTCTGAAGGCCTCTGGGTaGTGCCGGGCTAGCTTCCCC | + |
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Preference number: 4 (lower is better) Translates to: SGFGLWGPQKHCSKLAQALKASG*CRASFP Trigger: GGGGAAGCTAGCCCGGCAGCACCCAGAGGCCTTCAG...AGCTTGGGCCAGCTTTGAACAGTGCTTCTGAGGTCCCCAGAGACCAAAGCCAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093456.12 ENSMUST00000118850.8 |
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| CDS-3UTR TCA 90 bp | AAGCACTGTTCAAAGCTGGCCCAAGCTGAGCTCAAGGTTACCTGTACTCAGCCCCCTCTGGGATGTGGCTaGAGGCCTCTGGGTGCTGCC | + |
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Preference number: 4 (lower is better) Translates to: KHCSKLAQAELKVTCTQPPLGCG*RPLGAA Trigger: GGCAGCACCCAGAGGCCTTCAGCCACATCCCAGAGG...GGGCTGAGTACAGGTAACCTTGAGCTCAGCTTGGGCCAGCTTTGAACAGTGCTT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000093456.12 ENSMUST00000118850.8 |
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| CDS-3UTR GCA 90 bp | AAGCTGGCCCAAGCTGAGCTCAAGGTTACCTGTACTCAGCCCCACCTGGGGCACCGCTCACTCATCTGTTaGAGCCGCACACTGGACAGA | + |
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Preference number: 4 (lower is better) Translates to: KLAQAELKVTCTQPHLGHRSLIC*SRTLDR Trigger: TCTGTCCAGTGTGCGGCTGCAACAGATGAGTGAGCG...GTGCCCCAGGTGGGGCTGAGTACAGGTAACCTTGAGCTCAGCTTGGGCCAGCTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000093456.12 ENSMUST00000118850.8 |
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| CDS-3UTR GCA 90 bp | TCTGGCTTTGGTCTCTGGGGACCTCAGAAGCACTGTTCAAAGCTGGCCCAAGCTCAGGAGCCCGTGCTCTaGTCCGAGGTGGCGATGGTT | + |
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Preference number: 4 (lower is better) Translates to: SGFGLWGPQKHCSKLAQAQEPVL*SEVAMV Trigger: AACCATCGCCACCTCGGAGCAGAGCACGGGCTCCTG...AGCTTGGGCCAGCTTTGAACAGTGCTTCTGAGGTCCCCAGAGACCAAAGCCAGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093456.12 ENSMUST00000118850.8 |
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| CDS-3UTR TCA 90 bp | GTAGAAACAAGCTCGGCCCTCCTGTGCCCACCTAAGGTGTGGGGGACAGACGATCAGTGTTCACCATGCTaGGGAAGCGGCCACAGAAGA | + |
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Preference number: 4 (lower is better) Translates to: VETSSALLCPPKVWGTDDQCSPC*GSGHRR Trigger: TCTTCTGTGGCCGCTTCCTCAGCATGGTGAACACTG...ATCGTCTGTCCCCCACACCTTAGGTGGGCACAGGAGGGCCGAGCTTGTTTCTAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000093456.12 ENSMUST00000118850.8 |
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| CDS-3UTR CCA 90 bp | CGATCTGGCTTTGGTCTCTGGGGACCTCAGAAGCACTGTTCAAAGCTGGCCCAAGAACCCTCTGGGATGTaGCTGAAGGCCTCTGGGTGC | + |
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Preference number: 4 (lower is better) Translates to: RSGFGLWGPQKHCSKLAQEPSGM*LKASGC Trigger: GCACCCAGAGGCCTTCAGCCACATCCCAGAGGGTTC...TTGGGCCAGCTTTGAACAGTGCTTCTGAGGTCCCCAGAGACCAAAGCCAGATCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093456.12 ENSMUST00000118850.8 |
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| CDS-3UTR GCA 90 bp | GTGTGGGGGACAGACGATCTGGCTTTGGTCTCTGGGGACCTCAGAAGCACTGTTCGCTCACTCATCTGTTaGAGCCGCACACTGGACAGA | + |
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Preference number: 4 (lower is better) Translates to: VWGTDDLALVSGDLRSTVRSLIC*SRTLDR Trigger: TCTGTCCAGTGTGCGGCTGCAACAGATGAGTGAGCG...AACAGTGCTTCTGAGGTCCCCAGAGACCAAAGCCAGATCGTCTGTCCCCCACAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000093456.12 ENSMUST00000118850.8 |
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| 3UTR CAA 72 bp | TGCCCACCTAAGGTGTGGGGGACAGACGATCTGGCTTaGGTCTCTGGGGACCTCAGAAGCACTGTTCAAAGC | + |
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Preference number: 4 (lower is better) Translates to: CPPKVWGTDDLA*VSGDLRSTVQS Trigger: GCTTTGAACAGTGCTTCTGAGGTCCCCAGAGACCAAAGCCAGATCGTCTGTCCCCCACACCTTAGGTGGGCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000093456.12 ENSMUST00000118850.8 |
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| CDS-3UTR TCA 90 bp | AGCACTGTTCAAAGCTGGCCCAAGCTGAGCTCAAGGTTACCTGTACTCAGCCCCCAGTGTTCACCATGCTaGGGAAGCGGCCACAGAAGA | + |
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Preference number: 4 (lower is better) Translates to: STVQSWPKLSSRLPVLSPQCSPC*GSGHRR Trigger: TCTTCTGTGGCCGCTTCCTCAGCATGGTGAACACTG...GGGGCTGAGTACAGGTAACCTTGAGCTCAGCTTGGGCCAGCTTTGAACAGTGCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000093456.12 ENSMUST00000118850.8 |
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| CDS-3UTR TCA 90 bp | GAGCTCAAGGTTACCTGTACTCAGCCCCACCTGGGGCACATGTGCTGGCATAGGTCCCCTTCAGTGTCCTaGTCCTTCGGAAAATGCTGT | + |
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Preference number: 4 (lower is better) Translates to: ELKVTCTQPHLGHMCWHRSPSVS*SFGKCC Trigger: ACAGCATTTTCCGAAGGATCAGGACACTGAAGGGGA...CCTATGCCAGCACATGTGCCCCAGGTGGGGCTGAGTACAGGTAACCTTGAGCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000093456.12 ENSMUST00000118850.8 |
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| CDS-3UTR TCA 90 bp | AAGGTTACCTGTACTCAGCCCCACCTGGGGCACATGTGCTGGCATAGGGAAGTCTCCCCTTCAGTGTCCTaGTCCTTCGGAAAATGCTGT | + |
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Preference number: 4 (lower is better) Translates to: KVTCTQPHLGHMCWHREVSPSVS*SFGKCC Trigger: ACAGCATTTTCCGAAGGATCAGGACACTGAAGGGGA...GACTTCCCTATGCCAGCACATGTGCCCCAGGTGGGGCTGAGTACAGGTAACCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000093456.12 ENSMUST00000118850.8 |
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| CDS-3UTR TCA 90 bp | GGATGTCTTAGACCATGTCTTGAAAACAAAGCAAAGCTGAATGGGGGTAGCACACGCGGTGAAACCGGCTaGAGGCCTCTGGGTGCTGCC | + |
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Preference number: 4 (lower is better) Translates to: GCLRPCLENKAKLNGGSTRGETG*RPLGAA Trigger: GGCAGCACCCAGAGGCCTTCAGCCGGTTTCACCGCG...TGTGCTACCCCCATTCAGCTTTGCTTTGTTTTCAAGACATGGTCTAAGACATCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000155677.8 |
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| CDS-3UTR CCA 90 bp | GGGGGACAGACGATCTGGCTTTGGTCTCTGGGGACCTCAGAAGCACTGTTCAAATCATCTGTCTGTCTGTaGCCGTTGATGGCAGGAGAG | + |
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Preference number: 4 (lower is better) Translates to: GGQTIWLWSLGTSEALFKSSVCL*PLMAGE Trigger: CTCTCCTGCCATCAACGGCCACAGACAGACAGATGA...TTTGAACAGTGCTTCTGAGGTCCCCAGAGACCAAAGCCAGATCGTCTGTCCCCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000093456.12 ENSMUST00000118850.8 |
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| CDS-3UTR CCA 90 bp | CTGGCTTTGGTCTCTGGGGACCTCAGAAGCACTGTTCAAAGCTGGCCCAAGCTGTGTGGTGATACTGGGTaGGATAGGGTCTTCATCTTC | + |
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Preference number: 4 (lower is better) Translates to: LALVSGDLRSTVQSWPKLCGDTG*DRVFIF Trigger: GAAGATGAAGACCCTATCCCACCCAGTATCACCACA...CAGCTTGGGCCAGCTTTGAACAGTGCTTCTGAGGTCCCCAGAGACCAAAGCCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093456.12 ENSMUST00000118850.8 |
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| CDS-3UTR TCA 90 bp | AGCACTGTTCAAAGCTGGCCCAAGCTGAGCTCAAGGTTACCTGTACTCAGCCCCCACTGGACAGATTGTTaGAGTTCAGAAGCATCTCGT | + |
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Preference number: 4 (lower is better) Translates to: STVQSWPKLSSRLPVLSPHWTDC*SSEASR Trigger: ACGAGATGCTTCTGAACTTCAACAATCTGTCCAGTG...GGGGCTGAGTACAGGTAACCTTGAGCTCAGCTTGGGCCAGCTTTGAACAGTGCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000093456.12 ENSMUST00000118850.8 |
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| CDS-3UTR TCA 90 bp | ATCTGGCTTTGGTCTCTGGGGACCTCAGAAGCACTGTTCAAAGCTGGCCCAAGCCACTGGACAGATTGTTaGAGTTCAGAAGCATCTCGT | + |
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Preference number: 4 (lower is better) Translates to: IWLWSLGTSEALFKAGPSHWTDC*SSEASR Trigger: ACGAGATGCTTCTGAACTTCAACAATCTGTCCAGTG...GCTTGGGCCAGCTTTGAACAGTGCTTCTGAGGTCCCCAGAGACCAAAGCCAGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093456.12 ENSMUST00000118850.8 |
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| CDS-3UTR CCA 90 bp | CTCAGAAGCACTGTTCAAAGCTGGCCCAAGCTGAGCTCAAGGTTACCTGTACTCTGTGGTGATACTGGGTaGGATAGGGTCTTCATCTTC | + |
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Preference number: 4 (lower is better) Translates to: LRSTVQSWPKLSSRLPVLCGDTG*DRVFIF Trigger: GAAGATGAAGACCCTATCCCACCCAGTATCACCACA...GAGTACAGGTAACCTTGAGCTCAGCTTGGGCCAGCTTTGAACAGTGCTTCTGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093456.12 ENSMUST00000118850.8 |
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| CDS-3UTR TCA 90 bp | CTTCATCCTCTAGGAATGAACCCTCTGGGATGTCTTAGACCATGTCTTGAAAACCAGTGTTCACCATGCTaGGGAAGCGGCCACAGAAGA | + |
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Preference number: 4 (lower is better) Translates to: LHPLGMNPLGCLRPCLENQCSPC*GSGHRR Trigger: TCTTCTGTGGCCGCTTCCTCAGCATGGTGAACACTG...GTTTTCAAGACATGGTCTAAGACATCCCAGAGGGTTCATTCCTAGAGGATGAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155677.8 |
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| CDS-3UTR GCA 90 bp | GGATGTCTTAGACCATGTCTTGAAAACAAAGCAAAGCTGAATGGGGGTAGCACACGCTCACTCATCTGTTaGAGCCGCACACTGGACAGA | + |
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Preference number: 4 (lower is better) Translates to: GCLRPCLENKAKLNGGSTRSLIC*SRTLDR Trigger: TCTGTCCAGTGTGCGGCTGCAACAGATGAGTGAGCG...TGTGCTACCCCCATTCAGCTTTGCTTTGTTTTCAAGACATGGTCTAAGACATCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000155677.8 |
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| CDS-3UTR TCA 90 bp | CTTCATCCTCTAGGAATGAACCCTCTGGGATGTCTTAGACCATGTCTTGAAAACTCCCCTTCAGTGTCCTaGTCCTTCGGAAAATGCTGT | + |
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Preference number: 4 (lower is better) Translates to: LHPLGMNPLGCLRPCLENSPSVS*SFGKCC Trigger: ACAGCATTTTCCGAAGGATCAGGACACTGAAGGGGA...GTTTTCAAGACATGGTCTAAGACATCCCAGAGGGTTCATTCCTAGAGGATGAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000155677.8 |
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| 3UTR CAA 72 bp | ATGGACCCTCAAGAAACAGTCAGGTCTGCCTCTATCTaGAACCTTCTATTTCTCCAGTATTCAACACAACAG | + |
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Preference number: 4 (lower is better) Translates to: MDPQETVRSASI*NLLFLQYSTQQ Trigger: CTGTTGTGTTGAATACTGGAGAAATAGAAGGTTCAAGATAGAGGCAGACCTGACTGTTTCTTGAGGGTCCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093456.12 |
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| CDS-3UTR CAA 90 bp | GCAGCCAAGCTGACCGACTGTGACCCTAGGAGGATCACGGCTGCCCTGAGCCTTGTCTGTCTGTGGCCGTaGATGGCAGGAGAGCCAGGT | + |
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Preference number: 5 (lower is better) Translates to: AAKLTDCDPRRITAALSLVCLWP*MAGEPG Trigger: ACCTGGCTCTCCTGCCATCAACGGCCACAGACAGAC...AAGGCTCAGGGCAGCCGTGATCCTCCTAGGGTCACAGTCGGTCAGCTTGGCTGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093456.12 ENSMUST00000118850.8 |
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| CDS-3UTR CAA 90 bp | GCCCACCTAAGGTGTGGGGGACAGACGATCTGGCTTTGGTCTCTGGGGACCTCAGGCCACAGAAGACCCTaGAGGCTGAGTCTGGGGTGT | + |
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Preference number: 5 (lower is better) Translates to: AHLRCGGQTIWLWSLGTSGHRRP*RLSLGC Trigger: ACACCCCAGACTCAGCCTCAAGGGTCTTCTGTGGCC...TGAGGTCCCCAGAGACCAAAGCCAGATCGTCTGTCCCCCACACCTTAGGTGGGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000093456.12 ENSMUST00000118850.8 |
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| CDS TCA 90 bp | GGTCTTCATCTTCATCCTCTAGGAATGAACCCTCTGGGATGTGGCTaGAGGCCTCTGGGTGCTGCCGGGCTAGCTTCCCCTTCAGTGTCC | + |
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Preference number: 5 (lower is better) Translates to: GLHLHPLGMNPLGCG*RPLGAAGLASPSVS Trigger: GGACACTGAAGGGGAAGCTAGCCCGGCAGCACCCAGAGGCCTTCAGCCACATCCCAGAGGGTTCATTCCTAGAGGATGAAGATGAAGACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093456.12 ENSMUST00000118850.8 |
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| CDS-3UTR CAA 90 bp | ATCTGGCTTTGGTCTCTGGGGACCTCAGAAGCACTGTTCAAAGCTGGCCCAAGCGGCCACAGAAGACCCTaGAGGCTGAGTCTGGGGTGT | + |
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Preference number: 5 (lower is better) Translates to: IWLWSLGTSEALFKAGPSGHRRP*RLSLGC Trigger: ACACCCCAGACTCAGCCTCAAGGGTCTTCTGTGGCC...GCTTGGGCCAGCTTTGAACAGTGCTTCTGAGGTCCCCAGAGACCAAAGCCAGAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000093456.12 ENSMUST00000118850.8 |
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| CDS-3UTR CAA 90 bp | CACATGTGCTGGCATAGGGAAGTCCTGCTCTTAGGGGGAGTGGCAGGAATTAGGGTCTGTCTGTGGCCGTaGATGGCAGGAGAGCCAGGT | + |
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Preference number: 5 (lower is better) Translates to: HMCWHREVLLLGGVAGIRVCLWP*MAGEPG Trigger: ACCTGGCTCTCCTGCCATCAACGGCCACAGACAGAC...CCTAATTCCTGCCACTCCCCCTAAGAGCAGGACTTCCCTATGCCAGCACATGTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000093456.12 ENSMUST00000118850.8 |
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| CDS GCA 90 bp | ATGCTGTCCAGATCCCGTTTCATGTCCACCAAGGTGCGGGTATGGTaGATGAAGCGCTCACTCATCTGTTGCAGCCGCACACTGGACAGA | + |
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Preference number: 5 (lower is better) Translates to: MLSRSRFMSTKVRVW*MKRSLICCSRTLDR Trigger: TCTGTCCAGTGTGCGGCTGCAACAGATGAGTGAGCGCTTCATGCACCATACCCGCACCTTGGTGGACATGAAACGGGATCTGGACAGCAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000093456.12 ENSMUST00000117580.8 ENSMUST00000118850.8 ENSMUST00000121623.8 ENSMUST00000137610.3 ENSMUST00000138260.8 ENSMUST00000155677.8 |
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| CDS TCA 90 bp | TGTCCAGATCCCGTTTCATGTCCACCAAGGTGCGGGTATGGTGCATaGAGCGCTCACTCATCTGTTGCAGCCGCACACTGGACAGATTGT | + |
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Preference number: 5 (lower is better) Translates to: CPDPVSCPPRCGYGA*SAHSSVAAAHWTDC Trigger: ACAATCTGTCCAGTGTGCGGCTGCAACAGATGAGTGAGCGCTTCATGCACCATACCCGCACCTTGGTGGACATGAAACGGGATCTGGACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000093456.12 ENSMUST00000117580.8 ENSMUST00000118850.8 ENSMUST00000121623.8 ENSMUST00000137610.3 ENSMUST00000138260.8 ENSMUST00000155677.8 |
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| CDS CCA 90 bp | AAAATGCTGTCCAGATCCCGTTTCATGTCCACCAAGGTGCGGGTATaGTGCATGAAGCGCTCACTCATCTGTTGCAGCCGCACACTGGAC | + |
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Preference number: 5 (lower is better) Translates to: KMLSRSRFMSTKVRV*CMKRSLICCSRTLD Trigger: GTCCAGTGTGCGGCTGCAACAGATGAGTGAGCGCTTCATGCACCATACCCGCACCTTGGTGGACATGAAACGGGATCTGGACAGCATTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENSMUST00000093456.12 ENSMUST00000117580.8 ENSMUST00000118850.8 ENSMUST00000121623.8 ENSMUST00000137610.3 ENSMUST00000138260.8 ENSMUST00000155677.8 |
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| CDS TCA 90 bp | TCATCATCTGTCTGTCTGTGGCCGTTGATGGCAGGAGAGCCAGGTTaGATGTGTGATAGGTCCTCAAAGCCAGGACTTAGGGATGGCGAG | + |
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Preference number: 5 (lower is better) Translates to: SSSVCLWPLMAGEPG*MCDRSSKPGLRDGE Trigger: CTCGCCATCCCTAAGTCCTGGCTTTGAGGACCTATCACACATTCAACCTGGCTCTCCTGCCATCAACGGCCACAGACAGACAGATGATGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093456.12 ENSMUST00000118850.8 |
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| CDS GCA 90 bp | TCCACCAAGGTGCGGGTATGGTGCATGAAGCGCTCACTCATCTGTTaGAGCCGCACACTGGACAGATTGTTGAAGTTCAGAAGCATCTCG | + |
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Preference number: 5 (lower is better) Translates to: STKVRVWCMKRSLIC*SRTLDRLLKFRSIS Trigger: CGAGATGCTTCTGAACTTCAACAATCTGTCCAGTGTGCGGCTGCAACAGATGAGTGAGCGCTTCATGCACCATACCCGCACCTTGGTGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000093456.12 ENSMUST00000117580.8 ENSMUST00000118850.8 ENSMUST00000121623.8 ENSMUST00000137610.3 ENSMUST00000138260.8 ENSMUST00000155677.8 |
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| CDS-3UTR CAA 90 bp | CCACCTAAGGTGTGGGGGACAGACGATCTGGCTTTGGTCTCTGGGGACCTCAGAACACTGGACAGATTGTaGAAGTTCAGAAGCATCTCG | + |
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Preference number: 5 (lower is better) Translates to: PPKVWGTDDLALVSGDLRTLDRL*KFRSIS Trigger: CGAGATGCTTCTGAACTTCAACAATCTGTCCAGTGT...TCTGAGGTCCCCAGAGACCAAAGCCAGATCGTCTGTCCCCCACACCTTAGGTGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000093456.12 ENSMUST00000118850.8 |
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| CDS-3UTR CAA 90 bp | CTGGCTTTGGTCTCTGGGGACCTCAGAAGCACTGTTCAAAGCTGGCCCAAGCTGACACTGGACAGATTGTaGAAGTTCAGAAGCATCTCG | + |
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Preference number: 5 (lower is better) Translates to: LALVSGDLRSTVQSWPKLTLDRL*KFRSIS Trigger: CGAGATGCTTCTGAACTTCAACAATCTGTCCAGTGT...CAGCTTGGGCCAGCTTTGAACAGTGCTTCTGAGGTCCCCAGAGACCAAAGCCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093456.12 ENSMUST00000118850.8 |
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| CDS-3UTR CAA 90 bp | GGATGTCTTAGACCATGTCTTGAAAACAAAGCAAAGCTGAATGGGGGTAGCACAGGCCACAGAAGACCCTaGAGGCTGAGTCTGGGGTGT | + |
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Preference number: 5 (lower is better) Translates to: GCLRPCLENKAKLNGGSTGHRRP*RLSLGC Trigger: ACACCCCAGACTCAGCCTCAAGGGTCTTCTGTGGCC...TGTGCTACCCCCATTCAGCTTTGCTTTGTTTTCAAGACATGGTCTAAGACATCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000155677.8 |
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| CDS GCA 72 bp | ATCTGCATGTTGGCGTCTGGGCTGAAGGCCTCTGGGTaGTGCCGGGCTAGCTTCCCCTTCAGTGTCCTGATC | + |
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Preference number: 6 (lower is better) Translates to: ICMLASGLKASG*CRASFPFSVLI Trigger: GATCAGGACACTGAAGGGGAAGCTAGCCCGGCAGCACCCAGAGGCCTTCAGCCCAGACGCCAACATGCAGAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000121623.8 ENSMUST00000138260.8 |
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| CDS GCA 72 bp | GTCTGGGGTGTCCATCTCTTTCTCCTCCGCCTCCAATaGCGCGAGGAGGCGGGAGGACCAAATTGTAGAAGC | + |
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Preference number: 6 (lower is better) Translates to: VWGVHLFLLRLQ*REEAGGPNCRS Trigger: GCTTCTACAATTTGGTCCTCCCGCCTCCTCGCGGCATTGGAGGCGGAGGAGAAAGAGATGGACACCCCAGAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118850.8 |
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| CDS CCA 72 bp | TCCAGATCCCGTTTCATGTCCACCAAGGTGCGGGTATaGTGCATGAAGCGCTCACTCATCTGTTGCAGCCGC | + |
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Preference number: 6 (lower is better) Translates to: SRSRFMSTKVRV*CMKRSLICCSR Trigger: GCGGCTGCAACAGATGAGTGAGCGCTTCATGCACCATACCCGCACCTTGGTGGACATGAAACGGGATCTGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000093456.12 ENSMUST00000117580.8 ENSMUST00000118850.8 ENSMUST00000121623.8 ENSMUST00000137610.3 ENSMUST00000138260.8 ENSMUST00000155677.8 |
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| CDS GCA 72 bp | AGATCCCGTTTCATGTCCACCAAGGTGCGGGTATGGTaGATGAAGCGCTCACTCATCTGTTGCAGCCGCACA | + |
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Preference number: 6 (lower is better) Translates to: RSRFMSTKVRVW*MKRSLICCSRT Trigger: TGTGCGGCTGCAACAGATGAGTGAGCGCTTCATGCACCATACCCGCACCTTGGTGGACATGAAACGGGATCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000093456.12 ENSMUST00000117580.8 ENSMUST00000118850.8 ENSMUST00000121623.8 ENSMUST00000137610.3 ENSMUST00000138260.8 ENSMUST00000155677.8 |
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| CDS TCA 72 bp | GTCTGTCTGTGGCCGTTGATGGCAGGAGAGCCAGGTTaGATGTGTGATAGGTCCTCAAAGCCAGGACTTAGG | + |
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Preference number: 6 (lower is better) Translates to: VCLWPLMAGEPG*MCDRSSKPGLR Trigger: CCTAAGTCCTGGCTTTGAGGACCTATCACACATTCAACCTGGCTCTCCTGCCATCAACGGCCACAGACAGAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093456.12 ENSMUST00000118850.8 |
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| CDS CAA 72 bp | GGTGCGGGTATGGTGCATGAAGCGCTCACTCATCTGTaGCAGCCGCACACTGGACAGATTGTTGAAGTTCAG | + |
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Preference number: 6 (lower is better) Translates to: GAGMVHEALTHL*QPHTGQIVEVQ Trigger: CTGAACTTCAACAATCTGTCCAGTGTGCGGCTGCAACAGATGAGTGAGCGCTTCATGCACCATACCCGCACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 8 transcripts: ENSMUST00000093456.12 ENSMUST00000117580.8 ENSMUST00000118850.8 ENSMUST00000121623.8 ENSMUST00000132867.2 ENSMUST00000137610.3 ENSMUST00000138260.8 ENSMUST00000155677.8 |
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| CDS CAA 90 bp | GTCCACCAAGGTGCGGGTATGGTGCATGAAGCGCTCACTCATCTGTaGCAGCCGCACACTGGACAGATTGTTGAAGTTCAGAAGCATCTC | + |
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Preference number: 6 (lower is better) Translates to: VHQGAGMVHEALTHL*QPHTGQIVEVQKHL Trigger: GAGATGCTTCTGAACTTCAACAATCTGTCCAGTGTGCGGCTGCAACAGATGAGTGAGCGCTTCATGCACCATACCCGCACCTTGGTGGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000093456.12 ENSMUST00000117580.8 ENSMUST00000118850.8 ENSMUST00000121623.8 ENSMUST00000137610.3 ENSMUST00000138260.8 ENSMUST00000155677.8 |
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| CDS GCA 72 bp | GTGCGGGTATGGTGCATGAAGCGCTCACTCATCTGTTaGAGCCGCACACTGGACAGATTGTTGAAGTTCAGA | + |
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Preference number: 6 (lower is better) Translates to: VRVWCMKRSLIC*SRTLDRLLKFR Trigger: TCTGAACTTCAACAATCTGTCCAGTGTGCGGCTGCAACAGATGAGTGAGCGCTTCATGCACCATACCCGCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 8 transcripts: ENSMUST00000093456.12 ENSMUST00000117580.8 ENSMUST00000118850.8 ENSMUST00000121623.8 ENSMUST00000132867.2 ENSMUST00000137610.3 ENSMUST00000138260.8 ENSMUST00000155677.8 |
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| CDS CAA 90 bp | ATGAAGCGCTCACTCATCTGTTGCAGCCGCACACTGGACAGATTGTaGAAGTTCAGAAGCATCTCGTTGGTTTTCTCGAAGCGGTCCAGC | + |
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Preference number: 6 (lower is better) Translates to: MKRSLICCSRTLDRL*KFRSISLVFSKRSS Trigger: GCTGGACCGCTTCGAGAAAACCAACGAGATGCTTCTGAACTTCAACAATCTGTCCAGTGTGCGGCTGCAACAGATGAGTGAGCGCTTCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 8 transcripts: ENSMUST00000093456.12 ENSMUST00000117580.8 ENSMUST00000118850.8 ENSMUST00000121623.8 ENSMUST00000132867.2 ENSMUST00000137610.3 ENSMUST00000138260.8 ENSMUST00000155677.8 |
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| CDS CAA 90 bp | TGCATGAAGCGCTCACTCATCTGTTGCAGCCGCACACTGGACAGATaGTTGAAGTTCAGAAGCATCTCGTTGGTTTTCTCGAAGCGGTCC | + |
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Preference number: 6 (lower is better) Translates to: CMKRSLICCSRTLDR*LKFRSISLVFSKRS Trigger: GGACCGCTTCGAGAAAACCAACGAGATGCTTCTGAACTTCAACAATCTGTCCAGTGTGCGGCTGCAACAGATGAGTGAGCGCTTCATGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 8 transcripts: ENSMUST00000093456.12 ENSMUST00000117580.8 ENSMUST00000118850.8 ENSMUST00000121623.8 ENSMUST00000132867.2 ENSMUST00000137610.3 ENSMUST00000138260.8 ENSMUST00000155677.8 |
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| CDS CAA 90 bp | TGCAGCCGCACACTGGACAGATTGTTGAAGTTCAGAAGCATCTCGTaGGTTTTCTCGAAGCGGTCCAGCATATTCTTCTGGGCCAGGATT | + |
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Preference number: 6 (lower is better) Translates to: CSRTLDRLLKFRSIS*VFSKRSSIFFWARI Trigger: AATCCTGGCCCAGAAGAATATGCTGGACCGCTTCGAGAAAACCAACGAGATGCTTCTGAACTTCAACAATCTGTCCAGTGTGCGGCTGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENSMUST00000093456.12 ENSMUST00000117580.8 ENSMUST00000118850.8 ENSMUST00000121623.8 ENSMUST00000137610.3 ENSMUST00000138260.8 ENSMUST00000155677.8 |
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| CDS CAA 72 bp | CGCTCACTCATCTGTTGCAGCCGCACACTGGACAGATaGTTGAAGTTCAGAAGCATCTCGTTGGTTTTCTCG | + |
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Preference number: 6 (lower is better) Translates to: RSLICCSRTLDR*LKFRSISLVFS Trigger: CGAGAAAACCAACGAGATGCTTCTGAACTTCAACAATCTGTCCAGTGTGCGGCTGCAACAGATGAGTGAGCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 8 transcripts: ENSMUST00000093456.12 ENSMUST00000117580.8 ENSMUST00000118850.8 ENSMUST00000121623.8 ENSMUST00000132867.2 ENSMUST00000137610.3 ENSMUST00000138260.8 ENSMUST00000155677.8 |
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| CDS TCA 72 bp | CACTCATCTGTTGCAGCCGCACACTGGACAGATTGTTaGAGTTCAGAAGCATCTCGTTGGTTTTCTCGAAGC | + |
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Preference number: 6 (lower is better) Translates to: HSSVAAAHWTDC*SSEASRWFSRS Trigger: GCTTCGAGAAAACCAACGAGATGCTTCTGAACTTCAACAATCTGTCCAGTGTGCGGCTGCAACAGATGAGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 8 transcripts: ENSMUST00000093456.12 ENSMUST00000117580.8 ENSMUST00000118850.8 ENSMUST00000121623.8 ENSMUST00000132867.2 ENSMUST00000137610.3 ENSMUST00000138260.8 ENSMUST00000155677.8 |
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| CDS CAA 72 bp | TCACTCATCTGTTGCAGCCGCACACTGGACAGATTGTaGAAGTTCAGAAGCATCTCGTTGGTTTTCTCGAAG | + |
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Preference number: 6 (lower is better) Translates to: SLICCSRTLDRL*KFRSISLVFSK Trigger: CTTCGAGAAAACCAACGAGATGCTTCTGAACTTCAACAATCTGTCCAGTGTGCGGCTGCAACAGATGAGTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 8 transcripts: ENSMUST00000093456.12 ENSMUST00000117580.8 ENSMUST00000118850.8 ENSMUST00000121623.8 ENSMUST00000132867.2 ENSMUST00000137610.3 ENSMUST00000138260.8 ENSMUST00000155677.8 |
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