Pregenerated sensors for KRTDAP (Mus musculus)

Ensembl gene IDs: ENSMUSG00000074199

Ensembl transcript IDs: ENSMUST00000098559.3, ENSMUST00000187493.7, ENSMUST00000189673.7, ENSMUST00000189962.7, ENSMUST00000190990.7

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	TCCGGGTATATCGTGGGATGCCCCAGGGCTGCTCCCTGGACCGCATaGAATGCCAGAAGAGAGAGGAGAGCCACGACGGGAAGAATTGGG	+
Preference number: 5 (lower is better) Translates to: SGYIVGCPRAAPWTA*NARRERRATTGRIG Trigger: CCCAATTCTTCCCGTCGTGGCTCTCCTCTCTCTTCTGGCATTGCATGCGGTCCAGGGAGCAGCCCTGGGGCATCCCACGATATACCCGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000098559.3 ENSMUST00000187493.7 ENSMUST00000189673.7 ENSMUST00000189962.7 ENSMUST00000190990.7
CDS CCA 90 bp	CTGCTATCTTCCGGGTATATCGTGGGATGCCCCAGGGCTGCTCCCTaGACCGCATGCAATGCCAGAAGAGAGAGGAGAGCCACGACGGGA	+
Preference number: 5 (lower is better) Translates to: LLSSGYIVGCPRAAP*TACNARRERRATTG Trigger: TCCCGTCGTGGCTCTCCTCTCTCTTCTGGCATTGCATGCGGTCCAGGGAGCAGCCCTGGGGCATCCCACGATATACCCGGAAGATAGCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000098559.3 ENSMUST00000187493.7 ENSMUST00000189673.7 ENSMUST00000189962.7 ENSMUST00000190990.7
CDS GCA 90 bp	GTATATCGTGGGATGCCCCAGGGCTGCTCCCTGGACCGCATGCAATaGCAGAAGAGAGAGGAGAGCCACGACGGGAAGAATTGGGATCTT	+
Preference number: 5 (lower is better) Translates to: VYRGMPQGCSLDRMQ*QKREESHDGKNWDL Trigger: AAGATCCCAATTCTTCCCGTCGTGGCTCTCCTCTCTCTTCTGGCATTGCATGCGGTCCAGGGAGCAGCCCTGGGGCATCCCACGATATAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000098559.3 ENSMUST00000187493.7 ENSMUST00000189673.7 ENSMUST00000189962.7 ENSMUST00000190990.7
CDS GCA 90 bp	TCACTGGGAATCAGGAGCGGCACTTCTCAGTCCTTTCACCTCTGTTaGGGTAGGGTAATTATTGTAGCTGCTATCTTCCGGGTATATCGT	+
Preference number: 5 (lower is better) Translates to: SLGIRSGTSQSFHLC*GRVIIVAAIFRVYR Trigger: ACGATATACCCGGAAGATAGCAGCTACAATAATTACCCTACCGCAACAGAGGTGAAAGGACTGAGAAGTGCCGCTCCTGATTCCCAGTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000189962.7
CDS GCA 72 bp	ATCGTGGGATGCCCCAGGGCTGCTCCCTGGACCGCATaGAATGCCAGAAGAGAGAGGAGAGCCACGACGGGA	+
Preference number: 6 (lower is better) Translates to: IVGCPRAAPWTA*NARRERRATTG Trigger: TCCCGTCGTGGCTCTCCTCTCTCTTCTGGCATTGCATGCGGTCCAGGGAGCAGCCCTGGGGCATCCCACGAT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000098559.3 ENSMUST00000187493.7 ENSMUST00000189673.7 ENSMUST00000189962.7 ENSMUST00000190990.7
CDS CCA 72 bp	TCCGGGTATATCGTGGGATGCCCCAGGGCTGCTCCCTaGACCGCATGCAATGCCAGAAGAGAGAGGAGAGCC	+
Preference number: 6 (lower is better) Translates to: SGYIVGCPRAAP*TACNARRERRA Trigger: GGCTCTCCTCTCTCTTCTGGCATTGCATGCGGTCCAGGGAGCAGCCCTGGGGCATCCCACGATATACCCGGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000098559.3 ENSMUST00000187493.7 ENSMUST00000189673.7 ENSMUST00000189962.7 ENSMUST00000190990.7
CDS GCA 72 bp	GCTATCTTCCGGGTATATCGTGGGATGCCCCAGGGCTaGTCCCTGGACCGCATGCAATGCCAGAAGAGAGAG	+
Preference number: 6 (lower is better) Translates to: AIFRVYRGMPQG*SLDRMQCQKRE Trigger: CTCTCTCTTCTGGCATTGCATGCGGTCCAGGGAGCAGCCCTGGGGCATCCCACGATATACCCGGAAGATAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000098559.3 ENSMUST00000187493.7 ENSMUST00000189673.7 ENSMUST00000189962.7 ENSMUST00000190990.7
CDS CCA 72 bp	GGTAATTATTGTAGCTGCTATCTTCCGGGTATATCGTaGGATGCCCCAGGGCTGCTCCCTGGACCGCATGCA	+
Preference number: 6 (lower is better) Translates to: GNYCSCYLPGIS*DAPGLLPGPHA Trigger: TGCATGCGGTCCAGGGAGCAGCCCTGGGGCATCCCACGATATACCCGGAAGATAGCAGCTACAATAATTACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000098559.3 ENSMUST00000187493.7 ENSMUST00000189673.7 ENSMUST00000189962.7 ENSMUST00000190990.7
CDS GCA 72 bp	ATCAGGAGCGGCACTTCTCAGTCCTTTCACCTCTGTTaGGGTAGGGTAATTATTGTAGCTGCTATCTTCCGG	+
Preference number: 6 (lower is better) Translates to: IRSGTSQSFHLC*GRVIIVAAIFR Trigger: CCGGAAGATAGCAGCTACAATAATTACCCTACCGCAACAGAGGTGAAAGGACTGAGAAGTGCCGCTCCTGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000189962.7

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