Pregenerated sensors for KRTCAP2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000042747Ensembl transcript IDs: ENSMUST00000040888.12
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GCGTTCTTCTCCCACAATGACTCTCTTGTCAGTGGAGGGCAAGGATaGTGCAGCACCTGCCCAGCTTGGGCACTGGCAGATGAGGTCAAC | + |
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Preference number: 1 (lower is better) Translates to: AFFSHNDSLVSGGQG*CSTCPAWALADEVN Trigger: GTTGACCTCATCTGCCAGTGCCCAAGCTGGGCAGGTGCTGCAGCATCCTTGCCCTCCACTGACAAGAGAGTCATTGTGGGAGAAGAACGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040888.12 |
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| 3UTR CCA 90 bp | TCAGTGGAGGGCAAGGATGCTGCAGCACCTGCCCAGCTTGGGCACTaGCAGATGAGGTCAACTGTCACAGTTCACAGACACAGCTACAAA | + |
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Preference number: 1 (lower is better) Translates to: SVEGKDAAAPAQLGH*QMRSTVTVHRHSYK Trigger: TTTGTAGCTGTGTCTGTGAACTGTGACAGTTGACCTCATCTGCCAGTGCCCAAGCTGGGCAGGTGCTGCAGCATCCTTGCCCTCCACTGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040888.12 |
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| 3UTR GCA 72 bp | CACAATGACTCTCTTGTCAGTGGAGGGCAAGGATGCTaGAGCACCTGCCCAGCTTGGGCACTGGCAGATGAG | + |
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Preference number: 3 (lower is better) Translates to: HNDSLVSGGQGC*STCPAWALADE Trigger: CTCATCTGCCAGTGCCCAAGCTGGGCAGGTGCTGCAGCATCCTTGCCCTCCACTGACAAGAGAGTCATTGTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040888.12 |
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| 3UTR CCA 72 bp | GGCAAGGATGCTGCAGCACCTGCCCAGCTTGGGCACTaGCAGATGAGGTCAACTGTCACAGTTCACAGACAC | + |
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Preference number: 3 (lower is better) Translates to: GKDAAAPAQLGH*QMRSTVTVHRH Trigger: GTGTCTGTGAACTGTGACAGTTGACCTCATCTGCCAGTGCCCAAGCTGGGCAGGTGCTGCAGCATCCTTGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040888.12 |
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| 3UTR TCA 72 bp | ATGCTGCAGCACCTGCCCAGCTTGGGCACTGGCAGATaGGGTCAACTGTCACAGTTCACAGACACAGCTACA | + |
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Preference number: 3 (lower is better) Translates to: MLQHLPSLGTGR*GQLSQFTDTAT Trigger: TGTAGCTGTGTCTGTGAACTGTGACAGTTGACCTCATCTGCCAGTGCCCAAGCTGGGCAGGTGCTGCAGCAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040888.12 |
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| CDS-3UTR CCA 90 bp | ACTCTCTTGTCAGTGGAGGGCAAGGATGCTGCAGCACCTGCCCAGCTTGGGCACGGCCGGTGTGAGAACTaGAGCTGTTGCCTGGTACAG | + |
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Preference number: 4 (lower is better) Translates to: TLLSVEGKDAAAPAQLGHGRCEN*SCCLVQ Trigger: CTGTACCAGGCAACAGCTCCAGTTCTCACACCGGCC...GTGCCCAAGCTGGGCAGGTGCTGCAGCATCCTTGCCCTCCACTGACAAGAGAGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040888.12 |
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| CDS-3UTR TCA 90 bp | GGGCAAGGATGCTGCAGCACCTGCCCAGCTTGGGCACTGGCAGATGAGGTCAACGATTCTCCAGATTATTaGAGGCAGTCAGGGAGAAGA | + |
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Preference number: 4 (lower is better) Translates to: GQGCCSTCPAWALADEVNDSPDY*RQSGRR Trigger: TCTTCTCCCTGACTGCCTTCAATAATCTGGAGAATC...GTTGACCTCATCTGCCAGTGCCCAAGCTGGGCAGGTGCTGCAGCATCCTTGCCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040888.12 |
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| CDS-3UTR CCA 90 bp | GTGGAGGGCAAGGATGCTGCAGCACCTGCCCAGCTTGGGCACTGGCAGATGAGGGGGAAGATTTTTGCTTaGAAGCCTTTACCAAAGACC | + |
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Preference number: 4 (lower is better) Translates to: VEGKDAAAPAQLGHWQMRGKIFA*KPLPKT Trigger: GGTCTTTGGTAAAGGCTTCCAAGCAAAAATCTTCCC...CCTCATCTGCCAGTGCCCAAGCTGGGCAGGTGCTGCAGCATCCTTGCCCTCCAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000040888.12 |
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| 3UTR CAA 72 bp | CGATCATTTTTGCGTTCTTCTCCCACAATGACTCTCTaGTCAGTGGAGGGCAAGGATGCTGCAGCACCTGCC | + |
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Preference number: 4 (lower is better) Translates to: RSFLRSSPTMTL*SVEGKDAAAPA Trigger: GGCAGGTGCTGCAGCATCCTTGCCCTCCACTGACAAGAGAGTCATTGTGGGAGAAGAACGCAAAAATGATCG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040888.12 |
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| CDS-3UTR GCA 90 bp | GACTCTCTTGTCAGTGGAGGGCAAGGATGCTGCAGCACCTGCCCAGCTTGGGCACTCAGGGAAGATTTTTaGTTGGAAGCCTTTACCAAA | + |
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Preference number: 4 (lower is better) Translates to: DSLVSGGQGCCSTCPAWALREDF*LEAFTK Trigger: TTTGGTAAAGGCTTCCAAGCAAAAATCTTCCCTGAG...TGCCCAAGCTGGGCAGGTGCTGCAGCATCCTTGCCCTCCACTGACAAGAGAGTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040888.12 |
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| CDS-3UTR CCA 90 bp | CAGATGAGGTCAACTGTCACAGTTCACAGACACAGCTACAAAGACACAACTTTAACTGGAGCTGTTGCCTaGTACAGAGTGGACGATATC | + |
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Preference number: 4 (lower is better) Translates to: QMRSTVTVHRHSYKDTTLTGAVA*YRVDDI Trigger: GATATCGTCCACTCTGTACCAGGCAACAGCTCCAGT...TAAAGTTGTGTCTTTGTAGCTGTGTCTGTGAACTGTGACAGTTGACCTCATCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040888.12 |
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| CDS-3UTR CAA 90 bp | GTGGAGGGCAAGGATGCTGCAGCACCTGCCCAGCTTGGGCACTGGCAGATGAGGAGATTCTCCAGATTATaGAAGGCAGTCAGGGAGAAG | + |
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Preference number: 5 (lower is better) Translates to: VEGKDAAAPAQLGHWQMRRFSRL*KAVREK Trigger: CTTCTCCCTGACTGCCTTCAATAATCTGGAGAATCT...CCTCATCTGCCAGTGCCCAAGCTGGGCAGGTGCTGCAGCATCCTTGCCCTCCAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040888.12 |
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| CDS-3UTR CAA 90 bp | GGGCAAGGATGCTGCAGCACCTGCCCAGCTTGGGCACTGGCAGATGAGGTCAACAGGGAAGATTTTTGCTaGGAAGCCTTTACCAAAGAC | + |
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Preference number: 5 (lower is better) Translates to: GQGCCSTCPAWALADEVNREDFC*EAFTKD Trigger: GTCTTTGGTAAAGGCTTCCAAGCAAAAATCTTCCCT...GTTGACCTCATCTGCCAGTGCCCAAGCTGGGCAGGTGCTGCAGCATCCTTGCCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040888.12 |
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