Pregenerated sensors for KRTAP9-3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000049809Ensembl transcript IDs: ENSMUST00000062683.3
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | TTCCACACAGTGGGTCTTTTGTTGGTGTTCAAGCCAACAAAGATGTaGGCTCTTCCACCCCAAATGAATTTACCTCCTGGGAAATTATGT | + |
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Preference number: 2 (lower is better) Translates to: FHTVGLLLVFKPTKM*ALPPQMNLPPGKLC Trigger: ACATAATTTCCCAGGAGGTAAATTCATTTGGGGTGGAAGAGCCAACATCTTTGTTGGCTTGAACACCAACAAAAGACCCACTGTGTGGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062683.3 |
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| 3UTR CAA 90 bp | TATAGTAATGTAGTATACACTCCTTTCCACACAGTGGGTCTTTTGTaGGTGTTCAAGCCAACAAAGATGTTGGCTCTTCCACCCCAAATG | + |
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Preference number: 2 (lower is better) Translates to: YSNVVYTPFHTVGLL*VFKPTKMLALPPQM Trigger: CATTTGGGGTGGAAGAGCCAACATCTTTGTTGGCTTGAACACCAACAAAAGACCCACTGTGTGGAAAGGAGTGTATACTACATTACTATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062683.3 |
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| 3UTR CAA 90 bp | ATTTATAGTAATGTAGTATACACTCCTTTCCACACAGTGGGTCTTTaGTTGGTGTTCAAGCCAACAAAGATGTTGGCTCTTCCACCCCAA | + |
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Preference number: 2 (lower is better) Translates to: IYSNVVYTPFHTVGL*LVFKPTKMLALPPQ Trigger: TTGGGGTGGAAGAGCCAACATCTTTGTTGGCTTGAACACCAACAAAAGACCCACTGTGTGGAAAGGAGTGTATACTACATTACTATAAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062683.3 |
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| CDS-3UTR CCA 90 bp | TGTAGTATACACTCCTTTCCACACAGTGGGTCTTTTGTTGGTGTTCAAGCCAACCCACTGCCACCCTCCTaGCCACAGCCAATGCCACCC | + |
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Preference number: 4 (lower is better) Translates to: CSIHSFPHSGSFVGVQANPLPPS*PQPMPP Trigger: GGGTGGCATTGGCTGTGGCCAGGAGGGTGGCAGTGG...GTTGGCTTGAACACCAACAAAAGACCCACTGTGTGGAAAGGAGTGTATACTACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062683.3 |
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| CDS-3UTR CCA 90 bp | GCTCTTCCACCCCAAATGAATTTACCTCCTGGGAAATTATGTAGCCGTGTCAATTGGGCTGGCAGCAGCTaGAGCCACCTGTGGAGCAAG | + |
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Preference number: 4 (lower is better) Translates to: ALPPQMNLPPGKLCSRVNWAGSS*SHLWSK Trigger: CTTGCTCCACAGGTGGCTCCAGCTGCTGCCAGCCCA...ATTGACACGGCTACATAATTTCCCAGGAGGTAAATTCATTTGGGGTGGAAGAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062683.3 |
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| CDS-3UTR CCA 90 bp | GTAGTATACACTCCTTTCCACACAGTGGGTCTTTTGTTGGTGTTCAAGCCAACATGGGCTGGCAACAGCTaGACTGGGTGCAGGTGGGCT | + |
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Preference number: 4 (lower is better) Translates to: VVYTPFHTVGLLLVFKPTWAGNS*TGCRWA Trigger: AGCCCACCTGCACCCAGTCCAGCTGTTGCCAGCCCA...TGTTGGCTTGAACACCAACAAAAGACCCACTGTGTGGAAAGGAGTGTATACTAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062683.3 |
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| CDS-3UTR GCA 90 bp | TGTAGTATACACTCCTTTCCACACAGTGGGTCTTTTGTTGGTGTTCAAGCCAACCCTGGCCACAGCCAATaGCACCCCCAAAGCCAGTCT | + |
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Preference number: 4 (lower is better) Translates to: CSIHSFPHSGSFVGVQANPGHSQ*HPQSQS Trigger: AGACTGGCTTTGGGGGTGGCATTGGCTGTGGCCAGG...GTTGGCTTGAACACCAACAAAAGACCCACTGTGTGGAAAGGAGTGTATACTACA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062683.3 |
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| CDS-3UTR CCA 90 bp | GTAGTATACACTCCTTTCCACACAGTGGGTCTTTTGTTGGTGTTCAAGCCAACATGGCCTCACAACAGCTaGGCTGGCAACAGCTGGACT | + |
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Preference number: 4 (lower is better) Translates to: VVYTPFHTVGLLLVFKPTWPHNS*AGNSWT Trigger: AGTCCAGCTGTTGCCAGCCCAGCTGTTGTGAGGCCA...TGTTGGCTTGAACACCAACAAAAGACCCACTGTGTGGAAAGGAGTGTATACTAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062683.3 |
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| CDS-3UTR CCA 90 bp | ATACACTCCTTTCCACACAGTGGGTCTTTTGTTGGTGTTCAAGCCAACAAAGATAGCTGGAGCCACCTGTaGAGCAAGTGGGAAAGCCAC | + |
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Preference number: 4 (lower is better) Translates to: IHSFPHSGSFVGVQANKDSWSHL*SKWESH Trigger: GTGGCTTTCCCACTTGCTCCACAGGTGGCTCCAGCT...ATCTTTGTTGGCTTGAACACCAACAAAAGACCCACTGTGTGGAAAGGAGTGTAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062683.3 |
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| 3UTR CAA 72 bp | GTGGGTCTTTTGTTGGTGTTCAAGCCAACAAAGATGTaGGCTCTTCCACCCCAAATGAATTTACCTCCTGGG | + |
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Preference number: 4 (lower is better) Translates to: VGLLLVFKPTKM*ALPPQMNLPPG Trigger: CCCAGGAGGTAAATTCATTTGGGGTGGAAGAGCCAACATCTTTGTTGGCTTGAACACCAACAAAAGACCCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062683.3 |
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| 3UTR CAA 72 bp | GTAGTATACACTCCTTTCCACACAGTGGGTCTTTTGTaGGTGTTCAAGCCAACAAAGATGTTGGCTCTTCCA | + |
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Preference number: 4 (lower is better) Translates to: VVYTPFHTVGLL*VFKPTKMLALP Trigger: TGGAAGAGCCAACATCTTTGTTGGCTTGAACACCAACAAAAGACCCACTGTGTGGAAAGGAGTGTATACTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062683.3 |
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| 3UTR CAA 72 bp | AATGTAGTATACACTCCTTTCCACACAGTGGGTCTTTaGTTGGTGTTCAAGCCAACAAAGATGTTGGCTCTT | + |
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Preference number: 4 (lower is better) Translates to: NVVYTPFHTVGL*LVFKPTKMLAL Trigger: AAGAGCCAACATCTTTGTTGGCTTGAACACCAACAAAAGACCCACTGTGTGGAAAGGAGTGTATACTACATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062683.3 |
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| CDS CCA 90 bp | CGGCACCATCTAACACGGCAGCTCACACCTCCACTGCCACCCTCCTaGCCACAGCCAATGCCACCCCCAAAGCCAGTCTCGCAACAGCTT | + |
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Preference number: 5 (lower is better) Translates to: RHHLTRQLTPPLPPS*PQPMPPPKPVSQQL Trigger: AAGCTGTTGCGAGACTGGCTTTGGGGGTGGCATTGGCTGTGGCCAGGAGGGTGGCAGTGGAGGTGTGAGCTGCCGTGTTAGATGGTGCCG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062683.3 |
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