Pregenerated sensors for KRTAP9-1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000070335Ensembl transcript IDs: ENSMUST00000093936.5
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ACATCAAAATTGGTAAGTTGGTTCACAGATCTCTTAAAGGAGGACTaGGAATTTGATGATTGTGTGTGTATTAGAGGCAGAGAAAAGGCA | + |
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Preference number: 1 (lower is better) Translates to: TSKLVSWFTDLLKED*EFDDCVCIRGREKA Trigger: TGCCTTTTCTCTGCCTCTAATACACACACAATCATCAAATTCTCAGTCCTCCTTTAAGAGATCTGTGAACCAACTTACCAATTTTGATGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000093936.5 |
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| 3UTR TCA 72 bp | AACTTAAGGGAATGGTGTCTGCCAAGGCTGAGACTATaGATCCAGTTTCTAATAGATGAAGCTGACAGGAGA | + |
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Preference number: 3 (lower is better) Translates to: NLREWCLPRLRL*IQFLIDEADRR Trigger: TCTCCTGTCAGCTTCATCTATTAGAAACTGGATTCATAGTCTCAGCCTTGGCAGACACCATTCCCTTAAGTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093936.5 |
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| 3UTR-3UTR CAA 90 bp | GTCTCTTCAGTCCAGCAAACAACACAAATTTGTCATGATGAGTCACAAGGTGAAAAAATCCTGGACACATaGAGATATAATGATGGGCAT | + |
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Preference number: 3 (lower is better) Translates to: VSSVQQTTQICHDESQGEKILDT*RYNDGH Trigger: ATGCCCATCATTATATCTCAATGTGTCCAGGATTTT...TTCACCTTGTGACTCATCATGACAAATTTGTGTTGTTTGCTGGACTGAAGAGAC 39% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000093936.5 |
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| 3UTR TCA 72 bp | TTGGTAAGTTGGTTCACAGATCTCTTAAAGGAGGACTaGGAATTTGATGATTGTGTGTGTATTAGAGGCAGA | + |
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Preference number: 3 (lower is better) Translates to: LVSWFTDLLKED*EFDDCVCIRGR Trigger: TCTGCCTCTAATACACACACAATCATCAAATTCTCAGTCCTCCTTTAAGAGATCTGTGAACCAACTTACCAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093936.5 |
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| 3UTR TCA 72 bp | ATGAGTCACAAGGTGAATCCAAAATCCTGGACACATTaGGATATAATGATGGGCATTTATCACTGCAAATAT | + |
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Preference number: 3 (lower is better) Translates to: MSHKVNPKSWTH*DIMMGIYHCKY Trigger: ATATTTGCAGTGATAAATGCCCATCATTATATCTCAATGTGTCCAGGATTTTGGATTCACCTTGTGACTCAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093936.5 |
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| CDS-3UTR GCA 90 bp | GAATTTGATGATTGTGTGTGTATTAGAGGCAGAGAAAAGGCAGGGAGTTTGGGGGTGTGCGGCAGCAGCTaGTCACACAGCATGGCTGGA | + |
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Preference number: 4 (lower is better) Translates to: EFDDCVCIRGREKAGSLGVCGSS*SHSMAG Trigger: TCCAGCCATGCTGTGTGAGCAGCTGCTGCCGCACAC...CCCCAAACTCCCTGCCTTTTCTCTGCCTCTAATACACACACAATCATCAAATTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000093936.5 |
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| CDS-3UTR TCA 90 bp | GCTGACAGGAGAGAAATGGAGAAAACATCAAAATTGGTAAGTTGGTTCACAGATGCTGGCAGCACAGGTTaGGGCAGAAGGGCTGGCAGC | + |
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Preference number: 4 (lower is better) Translates to: ADRREMEKTSKLVSWFTDAGSTG*GRRAGS Trigger: GCTGCCAGCCCTTCTGCCTCAACCTGTGCTGCCAGC...ATCTGTGAACCAACTTACCAATTTTGATGTTTTCTCCATTTCTCTCCTGTCAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000093936.5 |
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| CDS-3UTR CCA 90 bp | GACTTTATTAGAATAGCAATGGGCAGTGTCTCTTCAGTCCAGCAAACAACACAACCAGAGCAGGCTGGCTaGCAGCACAGGTTGAGGCAG | + |
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Preference number: 4 (lower is better) Translates to: DFIRIAMGSVSSVQQTTQPEQAG*QHRLRQ Trigger: CTGCCTCAACCTGTGCTGCCAGCCAGCCTGCTCTGG...TTGTGTTGTTTGCTGGACTGAAGAGACACTGCCCATTGCTATTCTAATAAAGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093936.5 |
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| CDS-3UTR CCA 90 bp | CTTAAGGGAATGGTGTCTGCCAAGGCTGAGACTATGAATCCAGTTTCTAATAGACTGGACCCACAGCCTTaGGACAGGCAACCAGGCACA | + |
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Preference number: 4 (lower is better) Translates to: LKGMVSAKAETMNPVSNRLDPQP*DRQPGT Trigger: TGTGCCTGGTTGCCTGTCCCAAGGCTGTGGGTCCAG...TCTATTAGAAACTGGATTCATAGTCTCAGCCTTGGCAGACACCATTCCCTTAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093936.5 |
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| CDS-3UTR CCA 90 bp | CTTAAGGGAATGGTGTCTGCCAAGGCTGAGACTATGAATCCAGTTTCTAATAGACTCACACAGCATGGCTaGAAGCAGGTCCTGCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: LKGMVSAKAETMNPVSNRLTQHG*KQVLQQ Trigger: CTGCTGCAGGACCTGCTTCCAGCCATGCTGTGTGAG...TCTATTAGAAACTGGATTCATAGTCTCAGCCTTGGCAGACACCATTCCCTTAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093936.5 |
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| CDS-3UTR CCA 90 bp | GACTTTATTAGAATAGCAATGGGCAGTGTCTCTTCAGTCCAGCAAACAACACAAAGGTCCAGAGCAGGCTaGCTGGCAGCACAGGTTGAG | + |
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Preference number: 4 (lower is better) Translates to: DFIRIAMGSVSSVQQTTQRSRAG*LAAQVE Trigger: CTCAACCTGTGCTGCCAGCCAGCCTGCTCTGGACCT...TTGTGTTGTTTGCTGGACTGAAGAGACACTGCCCATTGCTATTCTAATAAAGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093936.5 |
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| CDS-3UTR GCA 90 bp | GACTTTATTAGAATAGCAATGGGCAGTGTCTCTTCAGTCCAGCAAACAACACAAGCTGGAAGCAGGTCCTaGAGCAGGTGGTTTGACAGC | + |
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Preference number: 4 (lower is better) Translates to: DFIRIAMGSVSSVQQTTQAGSRS*SRWFDS Trigger: GCTGTCAAACCACCTGCTGCAGGACCTGCTTCCAGC...TTGTGTTGTTTGCTGGACTGAAGAGACACTGCCCATTGCTATTCTAATAAAGTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093936.5 |
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| CDS-3UTR CCA 90 bp | GTCTCTTCAGTCCAGCAAACAACACAAATTTGTCATGATGAGTCACAAGGTGAAAGGGCTGGCAACAGCTaGTCACACAGCTTGGTCTCC | + |
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Preference number: 4 (lower is better) Translates to: VSSVQQTTQICHDESQGERAGNS*SHSLVS Trigger: GGAGACCAAGCTGTGTGACCAGCTGTTGCCAGCCCT...TTCACCTTGTGACTCATCATGACAAATTTGTGTTGTTTGCTGGACTGAAGAGAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093936.5 |
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| CDS-3UTR CCA 90 bp | TTTATTAGAATAGCAATGGGCAGTGTCTCTTCAGTCCAGCAAACAACACAAATTTTGAGGCAGAAGGGCTaGCAGCAGGGCCTGCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: FIRIAMGSVSSVQQTTQILRQKG*QQGLQQ Trigger: CTGCTGCAGGCCCTGCTGCCAGCCCTTCTGCCTCAA...AATTTGTGTTGTTTGCTGGACTGAAGAGACACTGCCCATTGCTATTCTAATAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093936.5 |
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| CDS-3UTR GCA 90 bp | TTTATTAGAATAGCAATGGGCAGTGTCTCTTCAGTCCAGCAAACAACACAAATTGGTAGCAAGTCCTGGTaGAGGTCACAGGTCCAGAGC | + |
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Preference number: 4 (lower is better) Translates to: FIRIAMGSVSSVQQTTQIGSKSW*RSQVQS Trigger: GCTCTGGACCTGTGACCTGCACCAGGACTTGCTACC...AATTTGTGTTGTTTGCTGGACTGAAGAGACACTGCCCATTGCTATTCTAATAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093936.5 |
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| CDS-3UTR CCA 90 bp | ATCCAGTTTCTAATAGATGAAGCTGACAGGAGAGAAATGGAGAAAACATCAAAAAGGGCTCACAACAGCTaGACCCACAGCCTTGGGACA | + |
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Preference number: 4 (lower is better) Translates to: IQFLIDEADRREMEKTSKRAHNS*THSLGT Trigger: TGTCCCAAGGCTGTGGGTCCAGCTGTTGTGAGCCCT...TTTTGATGTTTTCTCCATTTCTCTCCTGTCAGCTTCATCTATTAGAAACTGGAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000093936.5 |
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| CDS-3UTR CCA 90 bp | ATCCAGTTTCTAATAGATGAAGCTGACAGGAGAGAAATGGAGAAAACATCAAAACACACAAACACATGTTaGCTGGTAGCAAGTCCTGGT | + |
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Preference number: 4 (lower is better) Translates to: IQFLIDEADRREMEKTSKHTNTC*LVASPG Trigger: ACCAGGACTTGCTACCAGCCAACATGTGTTTGTGTG...TTTTGATGTTTTCTCCATTTCTCTCCTGTCAGCTTCATCTATTAGAAACTGGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000093936.5 |
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| 3UTR CAA 72 bp | CAGGAGAGAAATGGAGAAAACATCAAAATTGGTAAGTaGGTTCACAGATCTCTTAAAGGAGGACTGAGAATT | + |
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Preference number: 4 (lower is better) Translates to: QERNGENIKIGK*VHRSLKGGLRI Trigger: AATTCTCAGTCCTCCTTTAAGAGATCTGTGAACCAACTTACCAATTTTGATGTTTTCTCCATTTCTCTCCTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000093936.5 |
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| 3UTR CAA 72 bp | GATGAGTCACAAGGTGAATCCAAAATCCTGGACACATaGAGATATAATGATGGGCATTTATCACTGCAAATA | + |
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Preference number: 4 (lower is better) Translates to: DESQGESKILDT*RYNDGHLSLQI Trigger: TATTTGCAGTGATAAATGCCCATCATTATATCTCAATGTGTCCAGGATTTTGGATTCACCTTGTGACTCATC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093936.5 |
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| CDS CCA 90 bp | TGGCTGGTAGCAAGTCCTGGTGCAGGTCACAGGTCCAGAGCAGGCTaGCTGGCAGCACAGGTTGAGGCAGAAGGGCTGGCAGCAGGGCCT | + |
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Preference number: 5 (lower is better) Translates to: WLVASPGAGHRSRAG*LAAQVEAEGLAAGP Trigger: AGGCCCTGCTGCCAGCCCTTCTGCCTCAACCTGTGCTGCCAGCCAGCCTGCTCTGGACCTGTGACCTGCACCAGGACTTGCTACCAGCCA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093936.5 |
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| CDS-3UTR CAA 90 bp | GTCTCTTCAGTCCAGCAAACAACACAAATTTGTCATGATGAGTCACAAGGTGAAGCTGGACCCACAGCCTaGGGACAGGCAACCAGGCAC | + |
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Preference number: 5 (lower is better) Translates to: VSSVQQTTQICHDESQGEAGPTA*GQATRH Trigger: GTGCCTGGTTGCCTGTCCCAAGGCTGTGGGTCCAGC...TTCACCTTGTGACTCATCATGACAAATTTGTGTTGTTTGCTGGACTGAAGAGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093936.5 |
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| CDS CCA 72 bp | CAGGCACACAAACACATGTTGGCTGGTAGCAAGTCCTaGTGCAGGTCACAGGTCCAGAGCAGGCTGGCTGGC | + |
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Preference number: 6 (lower is better) Translates to: QAHKHMLAGSKS*CRSQVQSRLAG Trigger: GCCAGCCAGCCTGCTCTGGACCTGTGACCTGCACCAGGACTTGCTACCAGCCAACATGTGTTTGTGTGCCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093936.5 |
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