Pregenerated sensors for KRTAP8-1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000059632Ensembl transcript IDs: ENSMUST00000072280.5
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GAGGTTGATGAAGAAAGGAAGATGAAGGGTGGTGAGGCTGGAACCTaGAGGTGTCACAAAGCCTTCATGAAGAGATGGAACTGTGCCTGG | + |
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Preference number: 1 (lower is better) Translates to: EVDEERKMKGGEAGT*RCHKAFMKRWNCAW Trigger: CCAGGCACAGTTCCATCTCTTCATGAAGGCTTTGTGACACCTCCAGGTTCCAGCCTCACCACCCTTCATCTTCCTTTCTTCATCAACCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072280.5 |
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| 3UTR GCA 90 bp | CATGAGAGTCTTGAAATATTCCAAAGCAATACGTGCCACATGGGTTaGCAAGCTTCTGAAAAAGTCCTAAAGAAAGAGCATCCAGGAAAG | + |
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Preference number: 1 (lower is better) Translates to: HESLEIFQSNTCHMG*QASEKVLKKEHPGK Trigger: CTTTCCTGGATGCTCTTTCTTTAGGACTTTTTCAGAAGCTTGGCAACCCATGTGGCACGTATTGCTTTGGAATATTTCAAGACTCTCATG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000072280.5 |
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| 3UTR-3UTR CCA 90 bp | TTCCAAAGCAATACGTGCCACATGGGTTGCCAAGCTTCTGAAAAAGTCCTAAAGGGTGAGGCTGGAACCTaGAGGTGTCACAAAGCCTTC | + |
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Preference number: 2 (lower is better) Translates to: FQSNTCHMGCQASEKVLKGEAGT*RCHKAF Trigger: GAAGGCTTTGTGACACCTCCAGGTTCCAGCCTCACC...CTTTAGGACTTTTTCAGAAGCTTGGCAACCCATGTGGCACGTATTGCTTTGGAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000072280.5 |
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| 3UTR-3UTR GCA 90 bp | AGAAAGAGCATCCAGGAAAGGCAGAGTAAGGCATCATCTAGATTTTCAGTTCCTGAAGAGATGGAACTGTaGCTGGGGGATCACAGCAAA | + |
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Preference number: 2 (lower is better) Translates to: RKSIQERQSKASSRFSVPEEMEL*LGDHSK Trigger: TTTGCTGTGATCCCCCAGGCACAGTTCCATCTCTTC...AGGAACTGAAAATCTAGATGATGCCTTACTCTGCCTTTCCTGGATGCTCTTTCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000072280.5 |
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| 3UTR-3UTR GCA 90 bp | TTCCAAAGCAATACGTGCCACATGGGTTGCCAAGCTTCTGAAAAAGTCCTAAAGGATTTTCAGTTCCTTTaGTTGAGACTCAGTTGTAAG | + |
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Preference number: 2 (lower is better) Translates to: FQSNTCHMGCQASEKVLKDFQFL*LRLSCK Trigger: CTTACAACTGAGTCTCAAGCAAAGGAACTGAAAATC...CTTTAGGACTTTTTCAGAAGCTTGGCAACCCATGTGGCACGTATTGCTTTGGAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000072280.5 |
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| 3UTR-3UTR TCA 90 bp | AAAGAAAGAGCATCCAGGAAAGGCAGAGTAAGGCATCATCTAGATTTTCAGTTCCTCAGTTGTAAGATCTaGAAAACAGCTTCTTGGAAG | + |
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Preference number: 2 (lower is better) Translates to: KERASRKGRVRHHLDFQFLSCKI*KTASWK Trigger: CTTCCAAGAAGCTGTTTTTCAGATCTTACAACTGAG...GAACTGAAAATCTAGATGATGCCTTACTCTGCCTTTCCTGGATGCTCTTTCTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000072280.5 |
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| 3UTR TCA 72 bp | CCAAAGCAATACGTGCCACATGGGTTGCCAAGCTTCTaGAAAAGTCCTAAAGAAAGAGCATCCAGGAAAGGC | + |
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Preference number: 3 (lower is better) Translates to: PKQYVPHGLPSF*KSPKERASRKG Trigger: GCCTTTCCTGGATGCTCTTTCTTTAGGACTTTTTCAGAAGCTTGGCAACCCATGTGGCACGTATTGCTTTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072280.5 |
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| 3UTR-3UTR CAA 90 bp | TTCCAAAGCAATACGTGCCACATGGGTTGCCAAGCTTCTGAAAAAGTCCTAAAGTTTCAGTTCCTTTGCTaGAGACTCAGTTGTAAGATC | + |
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Preference number: 3 (lower is better) Translates to: FQSNTCHMGCQASEKVLKFQFLC*RLSCKI Trigger: GATCTTACAACTGAGTCTCAAGCAAAGGAACTGAAA...CTTTAGGACTTTTTCAGAAGCTTGGCAACCCATGTGGCACGTATTGCTTTGGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000072280.5 |
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| 3UTR-3UTR CAA 90 bp | GAAATATTCCAAAGCAATACGTGCCACATGGGTTGCCAAGCTTCTGAAAAAGTCCTGAAAAACAGCTTCTaGGAAGAGGTTGATGAAGAA | + |
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Preference number: 3 (lower is better) Translates to: EIFQSNTCHMGCQASEKVLKNSF*EEVDEE Trigger: TTCTTCATCAACCTCTTCCAAGAAGCTGTTTTTCAG...GACTTTTTCAGAAGCTTGGCAACCCATGTGGCACGTATTGCTTTGGAATATTTC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000072280.5 |
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| 3UTR GCA 72 bp | CTTGAAATATTCCAAAGCAATACGTGCCACATGGGTTaGCAAGCTTCTGAAAAAGTCCTAAAGAAAGAGCAT | + |
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Preference number: 3 (lower is better) Translates to: LEIFQSNTCHMG*QASEKVLKKEH Trigger: ATGCTCTTTCTTTAGGACTTTTTCAGAAGCTTGGCAACCCATGTGGCACGTATTGCTTTGGAATATTTCAAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000072280.5 |
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| 3UTR GCA 72 bp | AATCATGAGAGTCTTGAAATATTCCAAAGCAATACGTaGCACATGGGTTGCCAAGCTTCTGAAAAAGTCCTA | + |
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Preference number: 3 (lower is better) Translates to: NHESLEIFQSNT*HMGCQASEKVL Trigger: TAGGACTTTTTCAGAAGCTTGGCAACCCATGTGGCACGTATTGCTTTGGAATATTTCAAGACTCTCATGATT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000072280.5 |
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| CDS-3UTR GCA 90 bp | GGCAGAGTAAGGCATCATCTAGATTTTCAGTTCCTTTGCTTGAGACTCAGTTGTGAGGGTAGCCATAGCTaGCCCAGTAGCATCCTGGGA | + |
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Preference number: 4 (lower is better) Translates to: GRVRHHLDFQFLCLRLSCEGSHS*PSSILG Trigger: TCCCAGGATGCTACTGGGGCAGCTATGGCTACCCTC...ACAACTGAGTCTCAAGCAAAGGAACTGAAAATCTAGATGATGCCTTACTCTGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072280.5 |
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| CDS-3UTR CCA 90 bp | AAAGAAAGAGCATCCAGGAAAGGCAGAGTAAGGCATCATCTAGATTTTCAGTTCGCCCCAGTAGCATCCTaGGAAGACAGAGCCCTCAGC | + |
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Preference number: 4 (lower is better) Translates to: KERASRKGRVRHHLDFQFAPVAS*EDRALS Trigger: GCTGAGGGCTCTGTCTTCCCAGGATGCTACTGGGGC...GAACTGAAAATCTAGATGATGCCTTACTCTGCCTTTCCTGGATGCTCTTTCTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000072280.5 |
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| CDS-3UTR CCA 90 bp | AAAGAAAGAGCATCCAGGAAAGGCAGAGTAAGGCATCATCTAGATTTTCAGTTCAAGGCCATAGCCAACTaGAGAGTAGGTGCTACCATA | + |
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Preference number: 4 (lower is better) Translates to: KERASRKGRVRHHLDFQFKAIAN*RVGATI Trigger: TATGGTAGCACCTACTCTCCAGTTGGCTATGGCCTT...GAACTGAAAATCTAGATGATGCCTTACTCTGCCTTTCCTGGATGCTCTTTCTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072280.5 |
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| CDS-3UTR CCA 90 bp | TTCCAAAGCAATACGTGCCACATGGGTTGCCAAGCTTCTGAAAAAGTCCTAAAGTCAGTAGAGAGCAAATaGCCAGTATCTTCTGTAAGC | + |
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Preference number: 4 (lower is better) Translates to: FQSNTCHMGCQASEKVLKSVESK*PVSSVS Trigger: GCTTACAGAAGATACTGGCCATTTGCTCTCTACTGA...CTTTAGGACTTTTTCAGAAGCTTGGCAACCCATGTGGCACGTATTGCTTTGGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000072280.5 |
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| CDS GCA 90 bp | TACCATAGCCACAGCCAACACTGTACCCCAGAGGGTAGCCATAGCTaGCCCAGTAGCATCCTGGGAAGACAGAGCCCTCAGCGCCGGTGT | + |
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Preference number: 5 (lower is better) Translates to: YHSHSQHCTPEGSHS*PSSILGRQSPQRRC Trigger: ACACCGGCGCTGAGGGCTCTGTCTTCCCAGGATGCTACTGGGGCAGCTATGGCTACCCTCTGGGGTACAGTGTTGGCTGTGGCTATGGTA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072280.5 |
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| CDS GCA 90 bp | AGCCATTGTAGCCATAGCCAAGGCCATAGCCAACTGGAGAGTAGGTaGTACCATAGCCACAGCCAACACTGTACCCCAGAGGGTAGCCAT | + |
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Preference number: 5 (lower is better) Translates to: SHCSHSQGHSQLESR*YHSHSQHCTPEGSH Trigger: ATGGCTACCCTCTGGGGTACAGTGTTGGCTGTGGCTATGGTAGCACCTACTCTCCAGTTGGCTATGGCCTTGGCTATGGCTACAATGGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072280.5 |
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| CDS GCA 72 bp | AGCCATAGCCAAGGCCATAGCCAACTGGAGAGTAGGTaGTACCATAGCCACAGCCAACACTGTACCCCAGAG | + |
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Preference number: 6 (lower is better) Translates to: SHSQGHSQLESR*YHSHSQHCTPE Trigger: CTCTGGGGTACAGTGTTGGCTGTGGCTATGGTAGCACCTACTCTCCAGTTGGCTATGGCCTTGGCTATGGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072280.5 |
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