Pregenerated sensors for KRTAP7-1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000056706Ensembl transcript IDs: ENSMUST00000056118.4
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGATGGGCTCCTGCTGAGCATTGCTGGACCACAGTCTGTATCTTGTaGCTGCCACGGGAGGGTGGAAGGCAAACATTGCTTTTCAGGTTG | + |
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Preference number: 1 (lower is better) Translates to: RWAPAEHCWTTVCIL*LPREGGRQTLLFRL Trigger: CAACCTGAAAAGCAATGTTTGCCTTCCACCCTCCCGTGGCAGCCACAAGATACAGACTGTGGTCCAGCAATGCTCAGCAGGAGCCCATCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056118.4 |
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| 3UTR CCA 90 bp | GCATTGCTGGACCACAGTCTGTATCTTGTGGCTGCCACGGGAGGGTaGAAGGCAAACATTGCTTTTCAGGTTGTTTCTTGGGACGGTAGC | + |
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Preference number: 1 (lower is better) Translates to: ALLDHSLYLVAATGG*KANIAFQVVSWDGS Trigger: GCTACCGTCCCAAGAAACAACCTGAAAAGCAATGTTTGCCTTCCACCCTCCCGTGGCAGCCACAAGATACAGACTGTGGTCCAGCAATGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056118.4 |
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| 3UTR TCA 90 bp | TCAGTCTCTCATGAAAAAGCTTGTCTTGCTTCTTTTAGCTGCAGATaGGTTTCGGTTTATAGATGGGCTCCTGCTGAGCATTGCTGGACC | + |
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Preference number: 1 (lower is better) Translates to: SVSHEKACLASFSCR*VSVYRWAPAEHCWT Trigger: GGTCCAGCAATGCTCAGCAGGAGCCCATCTATAAACCGAAACTCATCTGCAGCTAAAAGAAGCAAGACAAGCTTTTTCATGAGAGACTGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000056118.4 |
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| 3UTR CAA 90 bp | TATAGATGGGCTCCTGCTGAGCATTGCTGGACCACAGTCTGTATCTaGTGGCTGCCACGGGAGGGTGGAAGGCAAACATTGCTTTTCAGG | + |
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Preference number: 2 (lower is better) Translates to: YRWAPAEHCWTTVCI*WLPREGGRQTLLFR Trigger: CCTGAAAAGCAATGTTTGCCTTCCACCCTCCCGTGGCAGCCACAAGATACAGACTGTGGTCCAGCAATGCTCAGCAGGAGCCCATCTATA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056118.4 |
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| 3UTR-3UTR TCA 90 bp | ACCCTGCCCACCCACCCCAACGGGAAACAACATTTATGTTGCTGTCATTTTCAGTCTTTTAGCTGCAGATaGGTTTCGGTTTATAGATGG | + |
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Preference number: 2 (lower is better) Translates to: TLPTHPNGKQHLCCCHFQSFSCR*VSVYRW Trigger: CCATCTATAAACCGAAACTCATCTGCAGCTAAAAGA...CTGAAAATGACAGCAACATAAATGTTGTTTCCCGTTGGGGTGGGTGGGCAGGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000056118.4 |
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| 3UTR-3UTR TCA 90 bp | AGACTAACAGTAAGACCCTGCCCACCCACCCCAACGGGAAACAACATTTATGTTATTTTCAGTCTCTCATaGAAAAGCTTGTCTTGCTTC | + |
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Preference number: 2 (lower is better) Translates to: RLTVRPCPPTPTGNNIYVIFSLS*KSLSCF Trigger: GAAGCAAGACAAGCTTTTTCATGAGAGACTGAAAAT...AACATAAATGTTGTTTCCCGTTGGGGTGGGTGGGCAGGGTCTTACTGTTAGTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000056118.4 |
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| 3UTR GCA 72 bp | CTGAGCATTGCTGGACCACAGTCTGTATCTTGTGGCTaGCACGGGAGGGTGGAAGGCAAACATTGCTTTTCA | + |
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Preference number: 3 (lower is better) Translates to: LSIAGPQSVSCG*HGRVEGKHCFS Trigger: TGAAAAGCAATGTTTGCCTTCCACCCTCCCGTGGCAGCCACAAGATACAGACTGTGGTCCAGCAATGCTCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056118.4 |
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| 3UTR-3UTR CAA 90 bp | GAGACTAACAGTAAGACCCTGCCCACCCACCCCAACGGGAAACAACATTTATGTATGAAAAAGCTTGTCTaGCTTCTTTTAGCTGCAGAT | + |
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Preference number: 3 (lower is better) Translates to: ETNSKTLPTHPNGKQHLCMKKLV*LLLAAD Trigger: ATCTGCAGCTAAAAGAAGCAAGACAAGCTTTTTCAT...ACATAAATGTTGTTTCCCGTTGGGGTGGGTGGGCAGGGTCTTACTGTTAGTCTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000056118.4 |
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| 3UTR TCA 72 bp | CATGAAAAAGCTTGTCTTGCTTCTTTTAGCTGCAGATaGGTTTCGGTTTATAGATGGGCTCCTGCTGAGCAT | + |
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Preference number: 3 (lower is better) Translates to: HEKACLASFSCR*VSVYRWAPAEH Trigger: ATGCTCAGCAGGAGCCCATCTATAAACCGAAACTCATCTGCAGCTAAAAGAAGCAAGACAAGCTTTTTCATG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000056118.4 |
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| 3UTR CAA 72 bp | GCTCCTGCTGAGCATTGCTGGACCACAGTCTGTATCTaGTGGCTGCCACGGGAGGGTGGAAGGCAAACATTG | + |
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Preference number: 4 (lower is better) Translates to: APAEHCWTTVCI*WLPREGGRQTL Trigger: CAATGTTTGCCTTCCACCCTCCCGTGGCAGCCACAAGATACAGACTGTGGTCCAGCAATGCTCAGCAGGAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056118.4 |
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| CDS-3UTR GCA 90 bp | ACCACAGTCTGTATCTTGTGGCTGCCACGGGAGGGTGGAAGGCAAACATTGCTTATGGCCTGTAGAGGCTaGTGCCGTAGCAACAGCCTG | + |
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Preference number: 4 (lower is better) Translates to: TTVCILWLPREGGRQTLLMACRG*CRSNSL Trigger: CAGGCTGTTGCTACGGCAGCAGCCTCTACAGGCCAT...AAGCAATGTTTGCCTTCCACCCTCCCGTGGCAGCCACAAGATACAGACTGTGGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056118.4 |
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| CDS-3UTR CCA 90 bp | ACCCTGCCCACCCACCCCAACGGGAAACAACATTTATGTTGCTGTCATTTTCAGAGAGCCAGAGCCCCATaGCCTGTAGAGGCTGCTGCC | + |
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Preference number: 4 (lower is better) Translates to: TLPTHPNGKQHLCCCHFQRARAP*PVEAAA Trigger: GGCAGCAGCCTCTACAGGCCATGGGGCTCTGGCTCT...CTGAAAATGACAGCAACATAAATGTTGTTTCCCGTTGGGGTGGGTGGGCAGGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000056118.4 |
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| CDS-3UTR CCA 90 bp | TTGCTGGACCACAGTCTGTATCTTGTGGCTGCCACGGGAGGGTGGAAGGCAAACAGGTCCCATGGAAGTTaGTTCCATAGCAGGGATACC | + |
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Preference number: 4 (lower is better) Translates to: LLDHSLYLVAATGGWKANRSHGS*FHSRDT Trigger: GGTATCCCTGCTATGGAACCAACTTCCATGGGACCT...GTTTGCCTTCCACCCTCCCGTGGCAGCCACAAGATACAGACTGTGGTCCAGCAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056118.4 |
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| 3UTR CAA 72 bp | ATCTTGTGGCTGCCACGGGAGGGTGGAAGGCAAACATaGCTTTTCAGGTTGTTTCTTGGGACGGTAGCTGGT | + |
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Preference number: 4 (lower is better) Translates to: ILWLPREGGRQT*LFRLFLGTVAG Trigger: ACCAGCTACCGTCCCAAGAAACAACCTGAAAAGCAATGTTTGCCTTCCACCCTCCCGTGGCAGCCACAAGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056118.4 |
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| CDS-3UTR CCA 90 bp | GAGGGTGGAAGGCAAACATTGCTTTTCAGGTTGTTTCTTGGGACGGTAGCTGGTATAGCAGGGATACCCTaGGAAGTAGTTTCCGCAGCA | + |
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Preference number: 4 (lower is better) Translates to: EGGRQTLLFRLFLGTVAGIAGIP*EVVSAA Trigger: TGCTGCGGAAACTACTTCCCAGGGTATCCCTGCTAT...ACCAGCTACCGTCCCAAGAAACAACCTGAAAAGCAATGTTTGCCTTCCACCCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056118.4 |
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| CDS CCA 90 bp | GCCAGAGCCCCATGGCCTGTAGAGGCTGCTGCCGTAGCAACAGCCTaGATTGCTGAAGTTACTAATGCCACCATAGCAGAAGTTGCGGGA | + |
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Preference number: 5 (lower is better) Translates to: ARAPWPVEAAAVATA*IAEVTNATIAEVAG Trigger: TCCCGCAACTTCTGCTATGGTGGCATTAGTAACTTCAGCAATCCAGGCTGTTGCTACGGCAGCAGCCTCTACAGGCCATGGGGCTCTGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056118.4 |
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| CDS CCA 72 bp | GTAGGTGCTGTAGCCGAAGCCAGAGCCAGAGCCCCATaGCCTGTAGAGGCTGCTGCCGTAGCAACAGCCTGG | + |
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Preference number: 6 (lower is better) Translates to: VGAVAEARARAP*PVEAAAVATAW Trigger: CCAGGCTGTTGCTACGGCAGCAGCCTCTACAGGCCATGGGGCTCTGGCTCTGGCTTCGGCTACAGCACCTAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056118.4 |
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