Pregenerated sensors for KRTAP6-3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000057855

Ensembl transcript IDs: ENSMUST00000079151.2, ENSMUST00000185581.2

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR GCA 90 bp	TCCTCTGCAAGCTTCCACACATTCCACCTGCAAATGAGACTGAAATaGTGCTTTTCAATCATCTTCCACAGAGTTGTGTATAATGTTGGA	+
Preference number: 1 (lower is better) Translates to: SSASFHTFHLQMRLK*CFSIIFHRVVYNVG Trigger: TCCAACATTATACACAACTCTGTGGAAGATGATTGAAAAGCAGCATTTCAGTCTCATTTGCAGGTGGAATGTGTGGAAGCTTGCAGAGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079151.2 ENSMUST00000185581.2
3UTR GCA 90 bp	ACAGAATCTTGGTCTAGTCAATATTATAAGGATTCTGAAGTCCTCTaGAAGCTTCCACACATTCCACCTGCAAATGAGACTGAAATGCTG	+
Preference number: 1 (lower is better) Translates to: TESWSSQYYKDSEVL*KLPHIPPANETEML Trigger: CAGCATTTCAGTCTCATTTGCAGGTGGAATGTGTGGAAGCTTGCAGAGGACTTCAGAATCCTTATAATATTGACTAGACCAAGATTCTGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079151.2 ENSMUST00000185581.2
3UTR GCA 90 bp	TCTGCAAGCTTCCACACATTCCACCTGCAAATGAGACTGAAATGCTaGTTTTCAATCATCTTCCACAGAGTTGTGTATAATGTTGGAATT	+
Preference number: 1 (lower is better) Translates to: SASFHTFHLQMRLKC*FSIIFHRVVYNVGI Trigger: AATTCCAACATTATACACAACTCTGTGGAAGATGATTGAAAAGCAGCATTTCAGTCTCATTTGCAGGTGGAATGTGTGGAAGCTTGCAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079151.2 ENSMUST00000185581.2
3UTR-3UTR GCA 90 bp	TGTCTTCACACAGGAGTTGATTTCCCCACAGAATCTTGGTCTAGTCAATATTATGATTCTGAAGTCCTCTaGAAGCTTCCACACATTCCA	+
Preference number: 2 (lower is better) Translates to: CLHTGVDFPTESWSSQYYDSEVL*KLPHIP Trigger: TGGAATGTGTGGAAGCTTGCAGAGGACTTCAGAATC...ATAATATTGACTAGACCAAGATTCTGTGGGGAAATCAACTCCTGTGTGAAGACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079151.2 ENSMUST00000185581.2
3UTR-3UTR GCA 90 bp	ACAGGAGTTGATTTCCCCACAGAATCTTGGTCTAGTCAATATTATAAGGATTCTATGAGACTGAAATGCTaGTTTTCAATCATCTTCCAC	+
Preference number: 2 (lower is better) Translates to: TGVDFPTESWSSQYYKDSMRLKC*FSIIFH Trigger: GTGGAAGATGATTGAAAAGCAGCATTTCAGTCTCAT...AGAATCCTTATAATATTGACTAGACCAAGATTCTGTGGGGAAATCAACTCCTGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000079151.2 ENSMUST00000185581.2
3UTR GCA 72 bp	TGGTCTAGTCAATATTATAAGGATTCTGAAGTCCTCTaGAAGCTTCCACACATTCCACCTGCAAATGAGACT	+
Preference number: 3 (lower is better) Translates to: WSSQYYKDSEVL*KLPHIPPANET Trigger: AGTCTCATTTGCAGGTGGAATGTGTGGAAGCTTGCAGAGGACTTCAGAATCCTTATAATATTGACTAGACCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079151.2 ENSMUST00000185581.2
3UTR CCA 72 bp	TGTCTTCACACAGGAGTTGATTTCCCCACAGAATCTTaGTCTAGTCAATATTATAAGGATTCTGAAGTCCTC	+
Preference number: 3 (lower is better) Translates to: CLHTGVDFPTES*SSQYYKDSEVL Trigger: GAGGACTTCAGAATCCTTATAATATTGACTAGACCAAGATTCTGTGGGGAAATCAACTCCTGTGTGAAGACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079151.2 ENSMUST00000185581.2
3UTR GCA 72 bp	TTCCACACATTCCACCTGCAAATGAGACTGAAATGCTaGTTTTCAATCATCTTCCACAGAGTTGTGTATAAT	+
Preference number: 3 (lower is better) Translates to: FHTFHLQMRLKC*FSIIFHRVVYN Trigger: ATTATACACAACTCTGTGGAAGATGATTGAAAAGCAGCATTTCAGTCTCATTTGCAGGTGGAATGTGTGGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079151.2 ENSMUST00000185581.2
3UTR TCA 72 bp	ATAATGTTGGAATTTCGGAAGATATTTAAGAATTCCTaGTTTGAACTGATATGTCTTCCAGTGAGACAGCAG	+
Preference number: 3 (lower is better) Translates to: IMLEFRKIFKNS*FELICLPVRQQ Trigger: CTGCTGTCTCACTGGAAGACATATCAGTTCAAATCAGGAATTCTTAAATATCTTCCGAAATTCCAACATTAT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079151.2 ENSMUST00000185581.2