Pregenerated sensors for KRTAP6-2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000062433Ensembl transcript IDs: ENSMUST00000082065.4
Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGCAGAACTAGTGAGACGAGACTGCAGATGCCAGGATCACAAAGTTaGCTTCTAAAAATGTGCAGCTGGAGGTCAAAGACTTTGTCAAAT | + |
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Preference number: 1 (lower is better) Translates to: SRTSETRLQMPGSQS*LLKMCSWRSKTLSN Trigger: ATTTGACAAAGTCTTTGACCTCCAGCTGCACATTTTTAGAAGGCAACTTTGTGATCCTGGCATCTGCAGTCTCGTCTCACTAGTTCTGCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000082065.4 |
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| 3UTR-3UTR GCA 90 bp | GATAGCAAGACAGCAGAACTAGTGAGACGAGACTGCAGATGCCAGGATCACAAATGCCTTCTAAAAATGTaGAGCTGGAGGTCAAAGACT | + |
|
Preference number: 2 (lower is better) Translates to: DSKTAELVRRDCRCQDHKCLLKM*SWRSKT Trigger: AGTCTTTGACCTCCAGCTGCACATTTTTAGAAGGCA...TTTGTGATCCTGGCATCTGCAGTCTCGTCTCACTAGTTCTGCTGTCTTGCTATC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000082065.4 |
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| 3UTR GCA 72 bp | AGTGAGACGAGACTGCAGATGCCAGGATCACAAAGTTaGCTTCTAAAAATGTGCAGCTGGAGGTCAAAGACT | + |
|
Preference number: 3 (lower is better) Translates to: SETRLQMPGSQS*LLKMCSWRSKT Trigger: AGTCTTTGACCTCCAGCTGCACATTTTTAGAAGGCAACTTTGTGATCCTGGCATCTGCAGTCTCGTCTCACT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000082065.4 |
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| CDS-3UTR GCA 90 bp | TCACAAAGTTGCCTTCTAAAAATGTGCAGCTGGAGGTCAAAGACTTTGTCAAATCATAGCCACAGGAGTTaGCGTAGTAGTTACAACACA | + |
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Preference number: 4 (lower is better) Translates to: SQSCLLKMCSWRSKTLSNHSHRS*RSSYNT Trigger: TGTGTTGTAACTACTACGGCAACTCCTGTGGCTATG...ATTTGACAAAGTCTTTGACCTCCAGCTGCACATTTTTAGAAGGCAACTTTGTGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000082065.4 |
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