Pregenerated sensors for KRTAP5-5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000073785Ensembl transcript IDs: ENSMUST00000097942.3
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTCCATAGCCTGACACCTACCTGTGGTCTTGATGTAGCCTCCAGGTaGGGCCAGGTGCCAAGGAGGTCAGAGTCTTGCAGACTGGAGAGA | + |
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Preference number: 1 (lower is better) Translates to: LHSLTPTCGLDVASR*GQVPRRSESCRLER Trigger: TCTCTCCAGTCTGCAAGACTCTGACCTCCTTGGCACCTGGCCTCACCTGGAGGCTACATCAAGACCACAGGTAGGTGTCAGGCTATGGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097942.3 |
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| 3UTR CCA 90 bp | CCTCCAGGTGAGGCCAGGTGCCAAGGAGGTCAGAGTCTTGCAGACTaGAGAGAAGGAAGTGGAGGAAGATCTGATCCACTGAGTGTGGAA | + |
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Preference number: 1 (lower is better) Translates to: PPGEARCQGGQSLAD*REGSGGRSDPLSVE Trigger: TTCCACACTCAGTGGATCAGATCTTCCTCCACTTCCTTCTCTCCAGTCTGCAAGACTCTGACCTCCTTGGCACCTGGCCTCACCTGGAGG 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097942.3 |
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| 3UTR TCA 90 bp | TGGAGAGAAGGAAGTGGAGGAAGATCTGATCCACTGAGTGTGGAATaGAGAAAGAGCTTCCAGCAAGAGGAGTTTTTCTCCACCCCAGGA | + |
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Preference number: 1 (lower is better) Translates to: WREGSGGRSDPLSVE*RKSFQQEEFFSTPG Trigger: TCCTGGGGTGGAGAAAAACTCCTCTTGCTGGAAGCTCTTTCTTCATTCCACACTCAGTGGATCAGATCTTCCTCCACTTCCTTCTCTCCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000097942.3 |
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| 3UTR TCA 90 bp | AGGTCAGAGTCTTGCAGACTGGAGAGAAGGAAGTGGAGGAAGATCTaGTCCACTGAGTGTGGAATGAAGAAAGAGCTTCCAGCAAGAGGA | + |
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Preference number: 1 (lower is better) Translates to: RSESCRLERRKWRKI*STECGMKKELPARG Trigger: TCCTCTTGCTGGAAGCTCTTTCTTCATTCCACACTCAGTGGATCAGATCTTCCTCCACTTCCTTCTCTCCAGTCTGCAAGACTCTGACCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097942.3 |
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| 3UTR TCA 90 bp | GTCTTGCAGACTGGAGAGAAGGAAGTGGAGGAAGATCTGATCCACTaGGTGTGGAATGAAGAAAGAGCTTCCAGCAAGAGGAGTTTTTCT | + |
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Preference number: 1 (lower is better) Translates to: VLQTGEKEVEEDLIH*VWNEERASSKRSFS Trigger: AGAAAAACTCCTCTTGCTGGAAGCTCTTTCTTCATTCCACACTCAGTGGATCAGATCTTCCTCCACTTCCTTCTCTCCAGTCTGCAAGAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000097942.3 |
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| 3UTR-3UTR CCA 90 bp | GTGCCAAGGAGGTCAGAGTCTTGCAGACTGGAGAGAAGGAAGTGGAGGAAGATCGCTCTTATCCCTGTCTaGAGAGAGCTGGTCCACGGA | + |
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Preference number: 2 (lower is better) Translates to: VPRRSESCRLERRKWRKIALIPV*RELVHG Trigger: TCCGTGGACCAGCTCTCTCCAGACAGGGATAAGAGC...GATCTTCCTCCACTTCCTTCTCTCCAGTCTGCAAGACTCTGACCTCCTTGGCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097942.3 |
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| 3UTR-3UTR TCA 90 bp | GTGCCAAGGAGGTCAGAGTCTTGCAGACTGGAGAGAAGGAAGTGGAGGAAGATCCCACTGAGTGTGGAATaGAGAAAGAGCTTCCAGCAA | + |
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Preference number: 2 (lower is better) Translates to: VPRRSESCRLERRKWRKIPLSVE*RKSFQQ Trigger: TTGCTGGAAGCTCTTTCTTCATTCCACACTCAGTGG...GATCTTCCTCCACTTCCTTCTCTCCAGTCTGCAAGACTCTGACCTCCTTGGCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097942.3 |
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| 3UTR TCA 72 bp | CTGACACCTACCTGTGGTCTTGATGTAGCCTCCAGGTaGGGCCAGGTGCCAAGGAGGTCAGAGTCTTGCAGA | + |
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Preference number: 3 (lower is better) Translates to: LTPTCGLDVASR*GQVPRRSESCR Trigger: TCTGCAAGACTCTGACCTCCTTGGCACCTGGCCTCACCTGGAGGCTACATCAAGACCACAGGTAGGTGTCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097942.3 |
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| 3UTR CCA 72 bp | GGAGAGAACCTCAGAGCTGCTGCTCTTATCCCTGTCTaGAGAGAGCTGGTCCACGGAATTAGTGGAGGAGTG | + |
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Preference number: 3 (lower is better) Translates to: GENLRAAALIPV*RELVHGISGGV Trigger: CACTCCTCCACTAATTCCGTGGACCAGCTCTCTCCAGACAGGGATAAGAGCAGCAGCTCTGAGGTTCTCTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097942.3 |
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| 3UTR CCA 72 bp | GAGGCCAGGTGCCAAGGAGGTCAGAGTCTTGCAGACTaGAGAGAAGGAAGTGGAGGAAGATCTGATCCACTG | + |
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Preference number: 3 (lower is better) Translates to: EARCQGGQSLAD*REGSGGRSDPL Trigger: CAGTGGATCAGATCTTCCTCCACTTCCTTCTCTCCAGTCTGCAAGACTCTGACCTCCTTGGCACCTGGCCTC 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097942.3 |
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| 3UTR TCA 72 bp | ACTGGAGAGAAGGAAGTGGAGGAAGATCTGATCCACTaGGTGTGGAATGAAGAAAGAGCTTCCAGCAAGAGG | + |
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Preference number: 3 (lower is better) Translates to: TGEKEVEEDLIH*VWNEERASSKR Trigger: CCTCTTGCTGGAAGCTCTTTCTTCATTCCACACTCAGTGGATCAGATCTTCCTCCACTTCCTTCTCTCCAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097942.3 |
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| 3UTR TCA 72 bp | GGAAGTGGAGGAAGATCTGATCCACTGAGTGTGGAATaGAGAAAGAGCTTCCAGCAAGAGGAGTTTTTCTCC | + |
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Preference number: 3 (lower is better) Translates to: GSGGRSDPLSVE*RKSFQQEEFFS Trigger: GGAGAAAAACTCCTCTTGCTGGAAGCTCTTTCTTCATTCCACACTCAGTGGATCAGATCTTCCTCCACTTCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000097942.3 |
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| 3UTR TCA 72 bp | TCTTGCAGACTGGAGAGAAGGAAGTGGAGGAAGATCTaGTCCACTGAGTGTGGAATGAAGAAAGAGCTTCCA | + |
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Preference number: 3 (lower is better) Translates to: SCRLERRKWRKI*STECGMKKELP Trigger: TGGAAGCTCTTTCTTCATTCCACACTCAGTGGATCAGATCTTCCTCCACTTCCTTCTCTCCAGTCTGCAAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097942.3 |
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| CDS-3UTR GCA 90 bp | GGCCAGGTGCCAAGGAGGTCAGAGTCTTGCAGACTGGAGAGAAGGAAGTGGAGGAGCAGCACACAGGCTTaGAACAGCAGCTGGAGCCAC | + |
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Preference number: 4 (lower is better) Translates to: GQVPRRSESCRLERRKWRSSTQA*NSSWSH Trigger: GTGGCTCCAGCTGCTGTTGCAAGCCTGTGTGCTGCT...CCTCCACTTCCTTCTCTCCAGTCTGCAAGACTCTGACCTCCTTGGCACCTGGCC 59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097942.3 |
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| 3UTR CAA 72 bp | CTCCAGGTGAGGCCAGGTGCCAAGGAGGTCAGAGTCTaGCAGACTGGAGAGAAGGAAGTGGAGGAAGATCTG | + |
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Preference number: 4 (lower is better) Translates to: LQVRPGAKEVRV*QTGEKEVEEDL Trigger: CAGATCTTCCTCCACTTCCTTCTCTCCAGTCTGCAAGACTCTGACCTCCTTGGCACCTGGCCTCACCTGGAG 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097942.3 |
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| CDS-3UTR TCA 90 bp | CCAGGAGAGAACCTCAGAGCTGCTGCTCTTATCCCTGTCTGGAGAGAGCTGGTCAGAAGACCCACAACCTaGAGAACAGCAGGGTTTGCA | + |
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Preference number: 4 (lower is better) Translates to: PGENLRAAALIPVWRELVRRPTT*RTAGFA Trigger: TGCAAACCCTGCTGTTCTTCAGGTTGTGGGTCTTCT...GACCAGCTCTCTCCAGACAGGGATAAGAGCAGCAGCTCTGAGGTTCTCTCCTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097942.3 |
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| CDS CCA 90 bp | AGCACACAGGCTTGCAACAGCAGCTGGAGCCACAGCCCCCACAGCTaGAGCCACAGCCTCCTGAACAGCCACAGCCCCCACAGCTGGAGC | + |
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Preference number: 5 (lower is better) Translates to: STQACNSSWSHSPHS*SHSLLNSHSPHSWS Trigger: GCTCCAGCTGTGGGGGCTGTGGCTGTTCAGGAGGCTGTGGCTCCAGCTGTGGGGGCTGTGGCTCCAGCTGCTGTTGCAAGCCTGTGTGCT 66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000097942.3 |
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| CDS CCA 90 bp | GCCACAGCCACCCTTGCAGCCCCCACAGCTGGAGCAGGAACAGGCTaGCACACAGCAGCACACAGGCTTGCAGCAGCACACAGGCTTGCA | + |
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Preference number: 5 (lower is better) Translates to: ATATLAAPTAGAGTG*HTAAHRLAAAHRLA Trigger: TGCAAGCCTGTGTGCTGCTGCAAGCCTGTGTGCTGCTGTGTGCCAGCCTGTTCCTGCTCCAGCTGTGGGGGCTGCAAGGGTGGCTGTGGC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000097942.3 |
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