Pregenerated sensors for KRTAP5-4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045236Ensembl transcript IDs: ENSMUST00000061403.6
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGACTTGATCCACAGGAAGCTAGAAAGATTAAGACTCAACCTGGGTaGAGGGGCAGCTCTCAGATTAGACTTACAAAGAGGAGGAAACAG | + |
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Preference number: 1 (lower is better) Translates to: GLDPQEARKIKTQPG*RGSSQIRLTKRRKQ Trigger: CTGTTTCCTCCTCTTTGTAAGTCTAATCTGAGAGCTGCCCCTCCACCCAGGTTGAGTCTTAATCTTTCTAGCTTCCTGTGGATCAAGTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061403.6 |
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| 3UTR-3UTR GCA 90 bp | AGACTCAACCTGGGTGGAGGGGCAGCTCTCAGATTAGACTTACAAAGAGGAGGACGGAATCAGCTCTGCTaGCTGAGATCTGTGGCCAGA | + |
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Preference number: 2 (lower is better) Translates to: RLNLGGGAALRLDLQRGGRNQLC*LRSVAR Trigger: TCTGGCCACAGATCTCAGGCAGCAGAGCTGATTCCG...TCCTCCTCTTTGTAAGTCTAATCTGAGAGCTGCCCCTCCACCCAGGTTGAGTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061403.6 |
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| 3UTR-3UTR TCA 90 bp | AGGGATCCAGGACTTGATCCACAGGAAGCTAGAAAGATTAAGACTCAACCTGGGCTACCACAAAGGAGGTaGACATGGGGCCAGGAGTGG | + |
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Preference number: 2 (lower is better) Translates to: RDPGLDPQEARKIKTQPGLPQRR*TWGQEW Trigger: CCACTCCTGGCCCCATGTTCACCTCCTTTGTGGTAG...CCCAGGTTGAGTCTTAATCTTTCTAGCTTCCTGTGGATCAAGTCCTGGATCCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061403.6 |
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| 3UTR-3UTR CCA 90 bp | CAACCTGGGTGGAGGGGCAGCTCTCAGATTAGACTTACAAAGAGGAGGAAACAGGTCTTTGGTGAACTGTaGTGTGAAAACCATAGAGCC | + |
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Preference number: 2 (lower is better) Translates to: QPGWRGSSQIRLTKRRKQVFGEL*CENHRA Trigger: GGCTCTATGGTTTTCACACCACAGTTCACCAAAGAC...CTGTTTCCTCCTCTTTGTAAGTCTAATCTGAGAGCTGCCCCTCCACCCAGGTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061403.6 |
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| 3UTR-3UTR GCA 90 bp | TGCAAAGACAGTTTATTTAGGGATCCAGGACTTGATCCACAGGAAGCTAGAAAGTACCGGAATCAGCTCTaGTGCCTGAGATCTGTGGCC | + |
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Preference number: 2 (lower is better) Translates to: CKDSLFRDPGLDPQEARKYRNQL*CLRSVA Trigger: GGCCACAGATCTCAGGCAGCAGAGCTGATTCCGGTA...CTTTCTAGCTTCCTGTGGATCAAGTCCTGGATCCCTAAATAAACTGTCTTTGCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061403.6 |
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| 3UTR CAA 90 bp | TTTGGTAAGAGATACCCTAGACTTCTCTCCATGTTGGAGGTGTCTTaGGTGAACTGTGGTGTGAAAACCATAGAGCCCCAGAACAGAGGA | + |
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Preference number: 2 (lower is better) Translates to: FGKRYPRLLSMLEVS*VNCGVKTIEPQNRG Trigger: TCCTCTGTTCTGGGGCTCTATGGTTTTCACACCACAGTTCACCAAAGACACCTCCAACATGGAGAGAAGTCTAGGGTATCTCTTACCAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061403.6 |
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| 3UTR-3UTR CAA 90 bp | TTCTGCAAAGACAGTTTATTTAGGGATCCAGGACTTGATCCACAGGAAGCTAGAGTGGAGTCCATCCATTaGGTAAGAGATACCCTAGAC | + |
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Preference number: 3 (lower is better) Translates to: FCKDSLFRDPGLDPQEARVESIH*VRDTLD Trigger: GTCTAGGGTATCTCTTACCAAATGGATGGACTCCAC...TCTAGCTTCCTGTGGATCAAGTCCTGGATCCCTAAATAAACTGTCTTTGCAGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061403.6 |
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| CDS-3UTR CCA 90 bp | CAACCTGGGTGGAGGGGCAGCTCTCAGATTAGACTTACAAAGAGGAGGAAACAGCAGGCTTGCAGCAGCTaGAACCACAGCCTCCACAGC | + |
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Preference number: 4 (lower is better) Translates to: QPGWRGSSQIRLTKRRKQQACSS*NHSLHS Trigger: GCTGTGGAGGCTGTGGTTCCAGCTGCTGCAAGCCTG...CTGTTTCCTCCTCTTTGTAAGTCTAATCTGAGAGCTGCCCCTCCACCCAGGTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061403.6 |
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| CDS-3UTR GCA 90 bp | GGTGAACTGTGGTGTGAAAACCATAGAGCCCCAGAACAGAGGAATAGACAGGCTAGCAGCACACAGGCTTaGAGCAGCTGGAACCACAGC | + |
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Preference number: 4 (lower is better) Translates to: GELWCENHRAPEQRNRQASSTQA*SSWNHS Trigger: GCTGTGGTTCCAGCTGCTGCAAGCCTGTGTGCTGCT...AGCCTGTCTATTCCTCTGTTCTGGGGCTCTATGGTTTTCACACCACAGTTCACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061403.6 |
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| CDS-3UTR TCA 90 bp | AGACTCAACCTGGGTGGAGGGGCAGCTCTCAGATTAGACTTACAAAGAGGAGGAAGAAGACCCACAGCCTaGAGAGCAACAGGGTTTGCA | + |
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Preference number: 4 (lower is better) Translates to: RLNLGGGAALRLDLQRGGRRPTA*RATGFA Trigger: TGCAAACCCTGTTGCTCTTCAGGCTGTGGGTCTTCT...TCCTCCTCTTTGTAAGTCTAATCTGAGAGCTGCCCCTCCACCCAGGTTGAGTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061403.6 |
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