Pregenerated sensors for KRTAP5-2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000054759Ensembl transcript IDs: ENSMUST00000067978.6, ENSMUST00000190456.2
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR-3UTR TCA 90 bp | AGTAGGGAATGTGAGAAAGACAGGTTAAAGAATCTGGGGACTAAGTTACAATGTAAAGCATCAGGGCAGTaGTTTGCTCCTTCCCATCAA | + |
Preference number: 2 (lower is better) Translates to: SRECEKDRLKNLGTKLQCKASGQ*FAPSHQ Trigger: TTGATGGGAAGGAGCAAATCACTGCCCTGATGCTTT...ACATTGTAACTTAGTCCCCAGATTCTTTAACCTGTCTTTCTCACATTCCCTACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067978.6 ENSMUST00000190456.2 |
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3UTR TCA 72 bp | TTACAATGTGAGCCTGTCAGGAAAGCATCAGGGCAGTaGTTTGCTCCTTCCCATCAAGGGCTGGAGAAGGAA | + |
Preference number: 3 (lower is better) Translates to: LQCEPVRKASGQ*FAPSHQGLEKE Trigger: TTCCTTCTCCAGCCCTTGATGGGAAGGAGCAAATCACTGCCCTGATGCTTTCCTGACAGGCTCACATTGTAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067978.6 ENSMUST00000190456.2 |
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3UTR-3UTR CAA 90 bp | GCCTGTCAGGAAAGCATCAGGGCAGTGATTTGCTCCTTCCCATCAAGGGCTGGAAAGGAAGCCTTGAACTaGAGTAGGAAAGTCATTATA | + |
Preference number: 3 (lower is better) Translates to: ACQESIRAVICSFPSRAGKEALN*SRKVII Trigger: TATAATGACTTTCCTACTCAAGTTCAAGGCTTCCTT...TCCAGCCCTTGATGGGAAGGAGCAAATCACTGCCCTGATGCTTTCCTGACAGGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067978.6 ENSMUST00000190456.2 |
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3UTR-3UTR CAA 90 bp | CTAAGTTACAATGTGAGCCTGTCAGGAAAGCATCAGGGCAGTGATTTGCTCCTTCTGGAGAAGGAAGCCTaGAACTTGAGTAGGAAAGTC | + |
Preference number: 3 (lower is better) Translates to: LSYNVSLSGKHQGSDLLLLEKEA*NLSRKV Trigger: GACTTTCCTACTCAAGTTCAAGGCTTCCTTCTCCAG...AAGGAGCAAATCACTGCCCTGATGCTTTCCTGACAGGCTCACATTGTAACTTAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067978.6 ENSMUST00000190456.2 |
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3UTR TCA 72 bp | TTTGGATACATTTCAGAACTTCACAGATTATCTTTATaGTGGCAAGCCTGGTTAGACATAGTAGGGAATGTG | + |
Preference number: 3 (lower is better) Translates to: FGYISELHRLSL*WQAWLDIVGNV Trigger: CACATTCCCTACTATGTCTAACCAGGCTTGCCATCATAAAGATAATCTGTGAAGTTCTGAAATGTATCCAAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067978.6 ENSMUST00000190456.2 |
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CDS-3UTR CCA 90 bp | AGCCTGTCAGGAAAGCATCAGGGCAGTGATTTGCTCCTTCCCATCAAGGGCTGGAGGGCTTGCAACAGCTaGATTGGCAACAACAGGGCT | + |
Preference number: 4 (lower is better) Translates to: SLSGKHQGSDLLLPIKGWRACNS*IGNNRA Trigger: AGCCCTGTTGTTGCCAATCCAGCTGTTGCAAGCCCT...CCAGCCCTTGATGGGAAGGAGCAAATCACTGCCCTGATGCTTTCCTGACAGGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067978.6 ENSMUST00000190456.2 |
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3UTR CAA 72 bp | AATGTGAGCCTGTCAGGAAAGCATCAGGGCAGTGATTaGCTCCTTCCCATCAAGGGCTGGAGAAGGAAGCCT | + |
Preference number: 4 (lower is better) Translates to: NVSLSGKHQGSD*LLPIKGWRRKP Trigger: AGGCTTCCTTCTCCAGCCCTTGATGGGAAGGAGCAAATCACTGCCCTGATGCTTTCCTGACAGGCTCACATT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067978.6 ENSMUST00000190456.2 |
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CDS-3UTR CCA 90 bp | CAAGGGCTGGAGAAGGAAGCCTTGAACTTGAGTAGGAAAGTCATTATAATCCCAAGGGCTTGCAACAGCTaGATTGGCAACAACAGGGCT | + |
Preference number: 4 (lower is better) Translates to: QGLEKEALNLSRKVIIIPRACNS*IGNNRA Trigger: AGCCCTGTTGTTGCCAATCCAGCTGTTGCAAGCCCT...TGGGATTATAATGACTTTCCTACTCAAGTTCAAGGCTTCCTTCTCCAGCCCTTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067978.6 ENSMUST00000190456.2 |
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3UTR CAA 72 bp | TTTGCTCCTTCCCATCAAGGGCTGGAGAAGGAAGCCTaGAACTTGAGTAGGAAAGTCATTATAATCCCACAG | + |
Preference number: 4 (lower is better) Translates to: FAPSHQGLEKEA*NLSRKVIIIPQ Trigger: CTGTGGGATTATAATGACTTTCCTACTCAAGTTCAAGGCTTCCTTCTCCAGCCCTTGATGGGAAGGAGCAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067978.6 ENSMUST00000190456.2 |
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CDS CCA 90 bp | TGGACTGGCAGCAGCAGGGCTTGCAGCAGCTGGACTGGCAGCAGCTaGATTGGCAGCAGCAGGGCTTGCAACAGCTGGATTGGCAACAAC | + |
Preference number: 5 (lower is better) Translates to: WTGSSRACSSWTGSS*IGSSRACNSWIGNN Trigger: GTTGTTGCCAATCCAGCTGTTGCAAGCCCTGCTGCTGCCAATCCAGCTGCTGCCAGTCCAGCTGCTGCAAGCCCTGCTGCTGCCAGTCCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067978.6 ENSMUST00000190456.2 |
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CDS-3UTR CAA 90 bp | GCCTGTCAGGAAAGCATCAGGGCAGTGATTTGCTCCTTCCCATCAAGGGCTGGAGAGCCACAGCTTCCCTaGCACCCACCACAGGAACCA | + |
Preference number: 5 (lower is better) Translates to: ACQESIRAVICSFPSRAGEPQLP*HPPQEP Trigger: TGGTTCCTGTGGTGGGTGCAAGGGAAGCTGTGGCTC...TCCAGCCCTTGATGGGAAGGAGCAAATCACTGCCCTGATGCTTTCCTGACAGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000190456.2 |
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CDS CAA 90 bp | CTGGCAGCAGCAGGGCTTGCAGCAGCTGGACTGGCAGCAGCTGGATaGGCAGCAGCAGGGCTTGCAACAGCTGGATTGGCAACAACAGGG | + |
Preference number: 6 (lower is better) Translates to: LAAAGLAAAGLAAAG*AAAGLATAGLATTG Trigger: CCCTGTTGTTGCCAATCCAGCTGTTGCAAGCCCTGCTGCTGCCAATCCAGCTGCTGCCAGTCCAGCTGCTGCAAGCCCTGCTGCTGCCAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067978.6 ENSMUST00000190456.2 |