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Pregenerated sensors for KRTAP5-2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000054759

Ensembl transcript IDs: ENSMUST00000067978.6, ENSMUST00000190456.2

Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp AGTAGGGAATGTGAGAAAGACAGGTTAAAGAATCTGGGGACTAAGTTACAATGTAAAGCATCAGGGCAGTaGTTTGCTCCTTCCCATCAA +
Preference number: 2 (lower is better)
Translates to: SRECEKDRLKNLGTKLQCKASGQ*FAPSHQ
Trigger: TTGATGGGAAGGAGCAAATCACTGCCCTGATGCTTT...ACATTGTAACTTAGTCCCCAGATTCTTTAACCTGTCTTTCTCACATTCCCTACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067978.6
ENSMUST00000190456.2
3UTR TCA 72 bp TTACAATGTGAGCCTGTCAGGAAAGCATCAGGGCAGTaGTTTGCTCCTTCCCATCAAGGGCTGGAGAAGGAA +
Preference number: 3 (lower is better)
Translates to: LQCEPVRKASGQ*FAPSHQGLEKE
Trigger: TTCCTTCTCCAGCCCTTGATGGGAAGGAGCAAATCACTGCCCTGATGCTTTCCTGACAGGCTCACATTGTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067978.6
ENSMUST00000190456.2
3UTR-3UTR CAA 90 bp GCCTGTCAGGAAAGCATCAGGGCAGTGATTTGCTCCTTCCCATCAAGGGCTGGAAAGGAAGCCTTGAACTaGAGTAGGAAAGTCATTATA +
Preference number: 3 (lower is better)
Translates to: ACQESIRAVICSFPSRAGKEALN*SRKVII
Trigger: TATAATGACTTTCCTACTCAAGTTCAAGGCTTCCTT...TCCAGCCCTTGATGGGAAGGAGCAAATCACTGCCCTGATGCTTTCCTGACAGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067978.6
ENSMUST00000190456.2
3UTR-3UTR CAA 90 bp CTAAGTTACAATGTGAGCCTGTCAGGAAAGCATCAGGGCAGTGATTTGCTCCTTCTGGAGAAGGAAGCCTaGAACTTGAGTAGGAAAGTC +
Preference number: 3 (lower is better)
Translates to: LSYNVSLSGKHQGSDLLLLEKEA*NLSRKV
Trigger: GACTTTCCTACTCAAGTTCAAGGCTTCCTTCTCCAG...AAGGAGCAAATCACTGCCCTGATGCTTTCCTGACAGGCTCACATTGTAACTTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067978.6
ENSMUST00000190456.2
3UTR TCA 72 bp TTTGGATACATTTCAGAACTTCACAGATTATCTTTATaGTGGCAAGCCTGGTTAGACATAGTAGGGAATGTG +
Preference number: 3 (lower is better)
Translates to: FGYISELHRLSL*WQAWLDIVGNV
Trigger: CACATTCCCTACTATGTCTAACCAGGCTTGCCATCATAAAGATAATCTGTGAAGTTCTGAAATGTATCCAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067978.6
ENSMUST00000190456.2
CDS-3UTR CCA 90 bp AGCCTGTCAGGAAAGCATCAGGGCAGTGATTTGCTCCTTCCCATCAAGGGCTGGAGGGCTTGCAACAGCTaGATTGGCAACAACAGGGCT +
Preference number: 4 (lower is better)
Translates to: SLSGKHQGSDLLLPIKGWRACNS*IGNNRA
Trigger: AGCCCTGTTGTTGCCAATCCAGCTGTTGCAAGCCCT...CCAGCCCTTGATGGGAAGGAGCAAATCACTGCCCTGATGCTTTCCTGACAGGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067978.6
ENSMUST00000190456.2
3UTR CAA 72 bp AATGTGAGCCTGTCAGGAAAGCATCAGGGCAGTGATTaGCTCCTTCCCATCAAGGGCTGGAGAAGGAAGCCT +
Preference number: 4 (lower is better)
Translates to: NVSLSGKHQGSD*LLPIKGWRRKP
Trigger: AGGCTTCCTTCTCCAGCCCTTGATGGGAAGGAGCAAATCACTGCCCTGATGCTTTCCTGACAGGCTCACATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067978.6
ENSMUST00000190456.2
CDS-3UTR CCA 90 bp CAAGGGCTGGAGAAGGAAGCCTTGAACTTGAGTAGGAAAGTCATTATAATCCCAAGGGCTTGCAACAGCTaGATTGGCAACAACAGGGCT +
Preference number: 4 (lower is better)
Translates to: QGLEKEALNLSRKVIIIPRACNS*IGNNRA
Trigger: AGCCCTGTTGTTGCCAATCCAGCTGTTGCAAGCCCT...TGGGATTATAATGACTTTCCTACTCAAGTTCAAGGCTTCCTTCTCCAGCCCTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067978.6
ENSMUST00000190456.2
3UTR CAA 72 bp TTTGCTCCTTCCCATCAAGGGCTGGAGAAGGAAGCCTaGAACTTGAGTAGGAAAGTCATTATAATCCCACAG +
Preference number: 4 (lower is better)
Translates to: FAPSHQGLEKEA*NLSRKVIIIPQ
Trigger: CTGTGGGATTATAATGACTTTCCTACTCAAGTTCAAGGCTTCCTTCTCCAGCCCTTGATGGGAAGGAGCAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067978.6
ENSMUST00000190456.2
CDS CCA 90 bp TGGACTGGCAGCAGCAGGGCTTGCAGCAGCTGGACTGGCAGCAGCTaGATTGGCAGCAGCAGGGCTTGCAACAGCTGGATTGGCAACAAC +
Preference number: 5 (lower is better)
Translates to: WTGSSRACSSWTGSS*IGSSRACNSWIGNN
Trigger: GTTGTTGCCAATCCAGCTGTTGCAAGCCCTGCTGCTGCCAATCCAGCTGCTGCCAGTCCAGCTGCTGCAAGCCCTGCTGCTGCCAGTCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067978.6
ENSMUST00000190456.2
CDS-3UTR CAA 90 bp GCCTGTCAGGAAAGCATCAGGGCAGTGATTTGCTCCTTCCCATCAAGGGCTGGAGAGCCACAGCTTCCCTaGCACCCACCACAGGAACCA +
Preference number: 5 (lower is better)
Translates to: ACQESIRAVICSFPSRAGEPQLP*HPPQEP
Trigger: TGGTTCCTGTGGTGGGTGCAAGGGAAGCTGTGGCTC...TCCAGCCCTTGATGGGAAGGAGCAAATCACTGCCCTGATGCTTTCCTGACAGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190456.2
CDS CAA 90 bp CTGGCAGCAGCAGGGCTTGCAGCAGCTGGACTGGCAGCAGCTGGATaGGCAGCAGCAGGGCTTGCAACAGCTGGATTGGCAACAACAGGG +
Preference number: 6 (lower is better)
Translates to: LAAAGLAAAGLAAAG*AAAGLATAGLATTG
Trigger: CCCTGTTGTTGCCAATCCAGCTGTTGCAAGCCCTGCTGCTGCCAATCCAGCTGCTGCCAGTCCAGCTGCTGCAAGCCCTGCTGCTGCCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067978.6
ENSMUST00000190456.2