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Pregenerated sensors for KRTAP4-9 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000078262

Ensembl transcript IDs: ENSMUST00000105059.4

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AATGTAGTTAGAAGGTTAAAAATCAATATGTTAAGAGAGAAGCTTTaGCTGGCCTCGTGGGCTTGCATTCACATATGGTCTACATCAGGA +
Preference number: 1 (lower is better)
Translates to: NVVRRLKINMLREKL*LASWACIHIWSTSG
Trigger: TCCTGATGTAGACCATATGTGAATGCAAGCCCACGAGGCCAGTCAAAGCTTCTCTCTTAACATATTGATTTTTAACCTTCTAACTACATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000105059.4
3UTR-3UTR TCA 90 bp TACAGATTTCACACACACACACACACACACAAATCCATCTTGTGTTCATTGACATTAAGAGAGAAGCTTTaGCTGGCCTCGTGGGCTTGC +
Preference number: 2 (lower is better)
Translates to: YRFHTHTHTHKSILCSLTLREKL*LASWAC
Trigger: GCAAGCCCACGAGGCCAGTCAAAGCTTCTCTCTTAA...TGTCAATGAACACAAGATGGATTTGTGTGTGTGTGTGTGTGTGTGAAATCTGTA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105059.4
3UTR-3UTR CCA 90 bp ACAAAGTATGGGGATGAGATCTGTTTACAGATTTCACACACACACACACACACACTACATCAGGAATGCTaGATGGTGAAGAACAGGACA +
Preference number: 2 (lower is better)
Translates to: TKYGDEICLQISHTHTHTLHQEC*MVKNRT
Trigger: TGTCCTGTTCTTCACCATCCAGCATTCCTGATGTAG...TGTGTGTGTGTGTGTGTGTGAAATCTGTAAACAGATCTCATCCCCATACTTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105059.4
3UTR-3UTR CCA 90 bp TACAGATTTCACACACACACACACACACACAAATCCATCTTGTGTTCATTGACAGCTTGCATTCACATATaGTCTACATCAGGAATGCTG +
Preference number: 2 (lower is better)
Translates to: YRFHTHTHTHKSILCSLTACIHI*STSGML
Trigger: CAGCATTCCTGATGTAGACCATATGTGAATGCAAGC...TGTCAATGAACACAAGATGGATTTGTGTGTGTGTGTGTGTGTGTGAAATCTGTA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105059.4
3UTR-3UTR CAA 90 bp ATCTGTTTACAGATTTCACACACACACACACACACACAAATCCATCTTGTGTTCGTTAAGAGAGAAGCTTaGACTGGCCTCGTGGGCTTG +
Preference number: 3 (lower is better)
Translates to: ICLQISHTHTHTQIHLVFVKREA*TGLVGL
Trigger: CAAGCCCACGAGGCCAGTCAAAGCTTCTCTCTTAAC...GAACACAAGATGGATTTGTGTGTGTGTGTGTGTGTGTGAAATCTGTAAACAGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105059.4
3UTR TCA 72 bp AGAAGGTTAAAAATCAATATGTTAAGAGAGAAGCTTTaGCTGGCCTCGTGGGCTTGCATTCACATATGGTCT +
Preference number: 3 (lower is better)
Translates to: RRLKINMLREKL*LASWACIHIWS
Trigger: AGACCATATGTGAATGCAAGCCCACGAGGCCAGTCAAAGCTTCTCTCTTAACATATTGATTTTTAACCTTCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000105059.4
CDS-3UTR TCA 90 bp CACACACACACACACAAATCCATCTTGTGTTCATTGACAAAGACACAGGGACAAAGAACCACTAGAGCATaGTGGGCGGCAACAAGTGGT +
Preference number: 4 (lower is better)
Translates to: HTHTHKSILCSLTKTQGQRTTRA*WAATSG
Trigger: ACCACTTGTTGCCGCCCATCATGCTCTAGTGGTTCT...TTGTCCCTGTGTCTTTGTCAATGAACACAAGATGGATTTGTGTGTGTGTGTGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105059.4
3UTR CAA 72 bp ACACACACACACACACACAAATCCATCTTGTGTTCATaGACAAAGACACAGGGACAAGACAATGTAGTTAGA +
Preference number: 4 (lower is better)
Translates to: THTHTHKSILCS*TKTQGQDNVVR
Trigger: TCTAACTACATTGTCTTGTCCCTGTGTCTTTGTCAATGAACACAAGATGGATTTGTGTGTGTGTGTGTGTGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105059.4
3UTR CAA 72 bp AGATTTCACACACACACACACACACACAAATCCATCTaGTGTTCATTGACAAAGACACAGGGACAAGACAAT +
Preference number: 4 (lower is better)
Translates to: RFHTHTHTHKSI*CSLTKTQGQDN
Trigger: ATTGTCTTGTCCCTGTGTCTTTGTCAATGAACACAAGATGGATTTGTGTGTGTGTGTGTGTGTGTGAAATCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105059.4