Pregenerated sensors for KRTAP4-8 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000089724

Ensembl transcript IDs: ENSMUST00000107439.2

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR CAA 90 bp	CAATATATTTGGGACCCAAAATCATTATCAGTTGGAATAGAGCCTTaGACTGGCATCTTGGGTTCAGCTCACAAATGGTCTACAATAGGA	+
Preference number: 2 (lower is better) Translates to: QYIWDPKSLSVGIEP*TGILGSAHKWSTIG Trigger: TCCTATTGTAGACCATTTGTGAGCTGAACCCAAGATGCCAGTCAAAGGCTCTATTCCAACTGATAATGATTTTGGGTCCCAAATATATTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107439.2
3UTR-3UTR CCA 90 bp	ATGGTAAAGAACAAATTTGTCTATGGGGATAAGGCCAAACTTTACAGATTTAGGGGTTCAGCTCACAAATaGTCTACAATAGGAATGGTG	+
Preference number: 2 (lower is better) Translates to: MVKNKFVYGDKAKLYRFRGSAHK*STIGMV Trigger: CACCATTCCTATTGTAGACCATTTGTGAGCTGAACC...CCTAAATCTGTAAAGTTTGGCCTTATCCCCATAGACAAATTTGTTCTTTACCAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107439.2
3UTR CAA 90 bp	ATTTTAGAGACAGTTGATAAACATGCAGGAATAGGGACAATATATTaGGGACCCAAAATCATTATCAGTTGGAATAGAGCCTTTGACTGG	+
Preference number: 2 (lower is better) Translates to: ILETVDKHAGIGTIY*GPKIIISWNRAFDW Trigger: CCAGTCAAAGGCTCTATTCCAACTGATAATGATTTTGGGTCCCAAATATATTGTCCCTATTCCTGCATGTTTATCAACTGTCTCTAAAAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107439.2
3UTR CCA 72 bp	GGGACAATATATTTGGGACCCAAAATCATTATCAGTTaGAATAGAGCCTTTGACTGGCATCTTGGGTTCAGC	+
Preference number: 3 (lower is better) Translates to: GTIYLGPKIIIS*NRAFDWHLGFS Trigger: GCTGAACCCAAGATGCCAGTCAAAGGCTCTATTCCAACTGATAATGATTTTGGGTCCCAAATATATTGTCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107439.2
3UTR CCA 72 bp	CCCAAAATCATTATCAGTTGGAATAGAGCCTTTGACTaGCATCTTGGGTTCAGCTCACAAATGGTCTACAAT	+
Preference number: 3 (lower is better) Translates to: PKIIISWNRAFD*HLGFSSQMVYN Trigger: ATTGTAGACCATTTGTGAGCTGAACCCAAGATGCCAGTCAAAGGCTCTATTCCAACTGATAATGATTTTGGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107439.2
CDS-3UTR CCA 90 bp	CCCAAAATCATTATCAGTTGGAATAGAGCCTTTGACTGGCATCTTGGGTTCAGCGCCACTAGAGCATGCTaGGCGGCAGCAGGTGGTCTG	+
Preference number: 4 (lower is better) Translates to: PKIIISWNRAFDWHLGFSATRAC*AAAGGL Trigger: CAGACCACCTGCTGCCGCCCAGCATGCTCTAGTGGC...GCTGAACCCAAGATGCCAGTCAAAGGCTCTATTCCAACTGATAATGATTTTGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107439.2
CDS-3UTR GCA 90 bp	TTATCAGTTGGAATAGAGCCTTTGACTGGCATCTTGGGTTCAGCTCACAAATGGAGAGCCACTAGAGCATaGTGGGCGGCAGCAGGTGGT	+
Preference number: 4 (lower is better) Translates to: LSVGIEPLTGILGSAHKWRATRA*WAAAGG Trigger: ACCACCTGCTGCCGCCCAGCATGCTCTAGTGGCTCT...CCATTTGTGAGCTGAACCCAAGATGCCAGTCAAAGGCTCTATTCCAACTGATAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107439.2
3UTR CAA 72 bp	TGGGACCCAAAATCATTATCAGTTGGAATAGAGCCTTaGACTGGCATCTTGGGTTCAGCTCACAAATGGTCT	+
Preference number: 4 (lower is better) Translates to: WDPKSLSVGIEP*TGILGSAHKWS Trigger: AGACCATTTGTGAGCTGAACCCAAGATGCCAGTCAAAGGCTCTATTCCAACTGATAATGATTTTGGGTCCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107439.2
3UTR CAA 72 bp	TCATTATCAGTTGGAATAGAGCCTTTGACTGGCATCTaGGGTTCAGCTCACAAATGGTCTACAATAGGAATG	+
Preference number: 4 (lower is better) Translates to: SLSVGIEPLTGI*GSAHKWSTIGM Trigger: CATTCCTATTGTAGACCATTTGTGAGCTGAACCCAAGATGCCAGTCAAAGGCTCTATTCCAACTGATAATGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107439.2