Pregenerated sensors for KRTAP4-7 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000045109

Ensembl transcript IDs: ENSMUST00000055121.7

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR TCA 90 bp	AACTTGGACCTAAGTGTTAAGAATCTGGGGATGATTCAATTCAGCAGCTGGTGCCAACATCCATCGATATaGCTCTGTATGCCCCTGTCG	+
Preference number: 2 (lower is better) Translates to: NLDLSVKNLGMIQFSSWCQHPSI*LCMPLS Trigger: CGACAGGGGCATACAGAGTCATATCGATGGATGTTG...GCACCAGCTGCTGAATTGAATCATCCCCAGATTCTTAACACTTAGGTCCAAGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055121.7
CDS-3UTR CCA 90 bp	GACACAACACAGGGCACCTGGGGGAATAAGAATGACCGAAGAGCATCTTCATTGGGCTGGCAGCAGCCTTaGCTACAGCCCTCCTCAGAG	+
Preference number: 4 (lower is better) Translates to: DTTQGTWGNKNDRRASSLGWQQP*LQPSSE Trigger: CTCTGAGGAGGGCTGTAGCCAAGGCTGCTGCCAGCC...CAATGAAGATGCTCTTCGGTCATTCTTATTCCCCCAGGTGCCCTGTGTTGTGTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055121.7
CDS-3UTR CCA 90 bp	GACACAACACAGGGCACCTGGGGGAATAAGAATGACCGAAGAGCATCTTCATTGAGAACCACCACAAGATaGTTGGCAGCAGCTGGAGAT	+
Preference number: 4 (lower is better) Translates to: DTTQGTWGNKNDRRASSLRTTTR*LAAAGD Trigger: ATCTCCAGCTGCTGCCAACCATCTTGTGGTGGTTCT...CAATGAAGATGCTCTTCGGTCATTCTTATTCCCCCAGGTGCCCTGTGTTGTGTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055121.7
CDS-3UTR CCA 90 bp	AGTTGTAACTTGGACCTAAGTGTTAAGAATCTGGGGATGATTCAATTCAGCAGCGACCTGACCGCAGACTaGTCTCAGACAGCAGCAGGG	+
Preference number: 4 (lower is better) Translates to: SCNLDLSVKNLGMIQFSSDLTAD*SQTAAG Trigger: CCCTGCTGCTGTCTGAGACCAGTCTGCGGTCAGGTC...GCTGCTGAATTGAATCATCCCCAGATTCTTAACACTTAGGTCCAAGTTACAACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055121.7
CDS-3UTR TCA 90 bp	AAATATAGAGATGTTACTCAGCAAAACAACATCCATCGATATGACTCTGTATGCGTTTGGCAGCAGACCTaGCCGCAGACTGGTCTCAGA	+
Preference number: 4 (lower is better) Translates to: KYRDVTQQNNIHRYDSVCVWQQT*PQTGLR Trigger: TCTGAGACCAGTCTGCGGTCAGGTCTGCTGCCAAAC...GCATACAGAGTCATATCGATGGATGTTGTTTTGCTGAGTAACATCTCTATATTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055121.7
3UTR CAA 72 bp	ATTGAAGTCAACCTGAGGACCCTTGAGAGTTGTAACTaGGACCTAAGTGTTAAGAATCTGGGGATGATTCAA	+
Preference number: 4 (lower is better) Translates to: IEVNLRTLESCN*DLSVKNLGMIQ Trigger: TTGAATCATCCCCAGATTCTTAACACTTAGGTCCAAGTTACAACTCTCAAGGGTCCTCAGGTTGACTTCAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055121.7
CDS-3UTR CAA 90 bp	AGTTGTAACTTGGACCTAAGTGTTAAGAATCTGGGGATGATTCAATTCAGCAGCGCGGTAGCAAGTGGTTaGGCAGCAGACCTGACCGCA	+
Preference number: 5 (lower is better) Translates to: SCNLDLSVKNLGMIQFSSAVASG*AADLTA Trigger: TGCGGTCAGGTCTGCTGCCAAACCACTTGCTACCGC...GCTGCTGAATTGAATCATCCCCAGATTCTTAACACTTAGGTCCAAGTTACAACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055121.7