Pregenerated sensors for KRTAP4-6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000075566Ensembl transcript IDs: ENSMUST00000100476.3
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AATTTGCTTTTATTTGAGAGAAACCTAGTTGGGGAAGAAACTGAGTaGATTTGGAGCCTAAGTCAAGATCCAACAGAGGCTTTGATTGAC | + |
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Preference number: 1 (lower is better) Translates to: NLLLFERNLVGEETE*IWSLSQDPTEALID Trigger: GTCAATCAAAGCCTCTGTTGGATCTTGACTTAGGCTCCAAATGCACTCAGTTTCTTCCCCAACTAGGTTTCTCTCAAATAAAAGCAAATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100476.3 |
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| 3UTR CCA 72 bp | GAGAGAAACCTAGTTGGGGAAGAAACTGAGTGCATTTaGAGCCTAAGTCAAGATCCAACAGAGGCTTTGATT | + |
|
Preference number: 3 (lower is better) Translates to: ERNLVGEETECI*SLSQDPTEALI Trigger: AATCAAAGCCTCTGTTGGATCTTGACTTAGGCTCCAAATGCACTCAGTTTCTTCCCCAACTAGGTTTCTCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100476.3 |
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| 3UTR GCA 72 bp | TTATTTGAGAGAAACCTAGTTGGGGAAGAAACTGAGTaGATTTGGAGCCTAAGTCAAGATCCAACAGAGGCT | + |
|
Preference number: 3 (lower is better) Translates to: LFERNLVGEETE*IWSLSQDPTEA Trigger: AGCCTCTGTTGGATCTTGACTTAGGCTCCAAATGCACTCAGTTTCTTCCCCAACTAGGTTTCTCTCAAATAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100476.3 |
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| CDS-3UTR CCA 90 bp | TGGAGCCTAAGTCAAGATCCAACAGAGGCTTTGATTGACCTCTTGGGGTTCACCACCACTAGAGCACGCTaGGCGGTAGCAGGTGGTCCT | + |
|
Preference number: 4 (lower is better) Translates to: WSLSQDPTEALIDLLGFTTTRAR*AVAGGP Trigger: AGGACCACCTGCTACCGCCCAGCGTGCTCTAGTGGT...GGTGAACCCCAAGAGGTCAATCAAAGCCTCTGTTGGATCTTGACTTAGGCTCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100476.3 |
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| CDS-3UTR GCA 90 bp | TGGAGCCTAAGTCAAGATCCAACAGAGGCTTTGATTGACCTCTTGGGGTTCACCGACAGCAGGTGGGCCTaGAGCAGCTGGAAATACAGC | + |
|
Preference number: 4 (lower is better) Translates to: WSLSQDPTEALIDLLGFTDSRWA*SSWKYS Trigger: GCTGTATTTCCAGCTGCTGCAGGCCCACCTGCTGTC...GGTGAACCCCAAGAGGTCAATCAAAGCCTCTGTTGGATCTTGACTTAGGCTCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100476.3 |
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