Pregenerated sensors for KRTAP4-2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000044649

Ensembl transcript IDs: ENSMUST00000058987.5

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR TCA 90 bp	TGGACAGAAGTCAGAATGTTCACACGGAACAATTGCAAACAAGTCTaGCTTCTGGGACTCAGGAGATCAAGTCCCTCAAACACTATGCAC	+
Preference number: 1 (lower is better) Translates to: WTEVRMFTRNNCKQV*LLGLRRSSPSNTMH Trigger: GTGCATAGTGTTTGAGGGACTTGATCTCCTGAGTCCCAGAAGTCAGACTTGTTTGCAATTGTTCCGTGTGAACATTCTGACTTCTGTCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058987.5
3UTR TCA 72 bp	GTCAGAATGTTCACACGGAACAATTGCAAACAAGTCTaGCTTCTGGGACTCAGGAGATCAAGTCCCTCAAAC	+
Preference number: 3 (lower is better) Translates to: VRMFTRNNCKQV*LLGLRRSSPSN Trigger: GTTTGAGGGACTTGATCTCCTGAGTCCCAGAAGTCAGACTTGTTTGCAATTGTTCCGTGTGAACATTCTGAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058987.5
3UTR CCA 72 bp	TGTTCACACGGAACAATTGCAAACAAGTCTGACTTCTaGGACTCAGGAGATCAAGTCCCTCAAACACTATGC	+
Preference number: 3 (lower is better) Translates to: CSHGTIANKSDF*DSGDQVPQTLC Trigger: GCATAGTGTTTGAGGGACTTGATCTCCTGAGTCCCAGAAGTCAGACTTGTTTGCAATTGTTCCGTGTGAACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058987.5
CDS-3UTR GCA 90 bp	TCTGGGACTCAGGAGATCAAGTCCCTCAAACACTATGCACTTTTTAGAAGGAAGGACGGCAACAGGGGCTaGAGCAAGGGCTGCAGCAGG	+
Preference number: 4 (lower is better) Translates to: SGTQEIKSLKHYALFRRKDGNRG*SKGCSR Trigger: CCTGCTGCAGCCCTTGCTGCAGCCCCTGTTGCCGTC...CTTCCTTCTAAAAAGTGCATAGTGTTTGAGGGACTTGATCTCCTGAGTCCCAGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058987.5
CDS-3UTR CCA 90 bp	GTGAGACATGTTGTGGGAGATCTGTTAAGCTATTTGGAGGTATTTGATAAAATCGGCTGGCAGCAGCCTTaGCCACAGCCCTCTTCAGAG	+
Preference number: 4 (lower is better) Translates to: VRHVVGDLLSYLEVFDKIGWQQP*PQPSSE Trigger: CTCTGAAGAGGGCTGTGGCCAAGGCTGCTGCCAGCC...GATTTTATCAAATACCTCCAAATAGCTTAACAGATCTCCCACAACATGTCTCAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058987.5
3UTR CAA 72 bp	GTTTTGGACAGAAGTCAGAATGTTCACACGGAACAATaGCAAACAAGTCTGACTTCTGGGACTCAGGAGATC	+
Preference number: 4 (lower is better) Translates to: VLDRSQNVHTEQ*QTSLTSGTQEI Trigger: GATCTCCTGAGTCCCAGAAGTCAGACTTGTTTGCAATTGTTCCGTGTGAACATTCTGACTTCTGTCCAAAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058987.5
CDS-3UTR CAA 90 bp	AAGTCTGACTTCTGGGACTCAGGAGATCAAGTCCCTCAAACACTATGCACTTTTGGGCTGGCAGCAGCCTaGGCCACAGCCCTCTTCAGA	+
Preference number: 5 (lower is better) Translates to: KSDFWDSGDQVPQTLCTFGLAAA*ATALFR Trigger: TCTGAAGAGGGCTGTGGCCAAGGCTGCTGCCAGCCC...AAAAGTGCATAGTGTTTGAGGGACTTGATCTCCTGAGTCCCAGAAGTCAGACTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058987.5
CDS-3UTR CAA 90 bp	TCTGGGACTCAGGAGATCAAGTCCCTCAAACACTATGCACTTTTTAGAAGGAAGGCTACCACAGGAGGGTaGACAGCAGCTGGAAATGCA	+
Preference number: 5 (lower is better) Translates to: SGTQEIKSLKHYALFRRKATTGG*TAAGNA Trigger: TGCATTTCCAGCTGCTGTCAACCCTCCTGTGGTAGC...CTTCCTTCTAAAAAGTGCATAGTGTTTGAGGGACTTGATCTCCTGAGTCCCAGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058987.5

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