Pregenerated sensors for KRTAP4-16 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000046474

Ensembl transcript IDs: ENSMUST00000107437.2

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR GCA 90 bp	GACAACAAAGGTAGGAGGCATTTAGTACAGGAAAAAGTTAACATGGATGAGAAGTGCAGCTGGGCTGACTaGAGCTGGGCTGGCCGCAGC	+
Preference number: 4 (lower is better) Translates to: DNKGRRHLVQEKVNMDEKCSWAD*SWAGRS Trigger: GCTGCGGCCAGCCCAGCTGCAGTCAGCCCAGCTGCA...CTTCTCATCCATGTTAACTTTTTCCTGTACTAAATGCCTCCTACCTTTGTTGTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000107437.2
CDS-3UTR CCA 90 bp	TGGTGTCAGGACAACAAAGGTAGGAGGCATTTAGTACAGGAAAAAGTTAACATGTGGGCTGACTGCAGCTaGGCTGGCCGCAGCTCTCCT	+
Preference number: 4 (lower is better) Translates to: WCQDNKGRRHLVQEKVNMWADCS*AGRSSP Trigger: AGGAGAGCTGCGGCCAGCCCAGCTGCAGTCAGCCCA...CATGTTAACTTTTTCCTGTACTAAATGCCTCCTACCTTTGTTGTCCTGACACCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000107437.2
CDS-3UTR CCA 90 bp	TTAACACAGAATGGTAAAGGCCAAGGGAAGGATGGTAGTAGAGACTTGAGAGATTTGGCTGGCTGCAGCTaGGCTGACTGCAGCTGGGCT	+
Preference number: 4 (lower is better) Translates to: LTQNGKGQGKDGSRDLRDLAGCS*ADCSWA Trigger: AGCCCAGCTGCAGTCAGCCCAGCTGCAGCCAGCCAA...ATCTCTCAAGTCTCTACTACCATCCTTCCCTTGGCCTTTACCATTCTGTGTTAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107437.2
CDS-3UTR CCA 90 bp	ACACAGAATGGTAAAGGCCAAGGGAAGGATGGTAGTAGAGACTTGAGAGATATGTTGTACGGCAGCAAGTaGTCTGACAGCAGACTGGGC	+
Preference number: 4 (lower is better) Translates to: TQNGKGQGKDGSRDLRDMLYGSK*SDSRLG Trigger: GCCCAGTCTGCTGTCAGACCACTTGCTGCCGTACAA...CATATCTCTCAAGTCTCTACTACCATCCTTCCCTTGGCCTTTACCATTCTGTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107437.2
CDS-3UTR TCA 90 bp	GACAACAAAGGTAGGAGGCATTTAGTACAGGAAAAAGTTAACATGGATGAGAAGTCCTGGCAGGGACTTTaGTCACAGCCCTGCTCAGAG	+
Preference number: 4 (lower is better) Translates to: DNKGRRHLVQEKVNMDEKSWQGL*SQPCSE Trigger: CTCTGAGCAGGGCTGTGATCAAAGTCCCTGCCAGGA...CTTCTCATCCATGTTAACTTTTTCCTGTACTAAATGCCTCCTACCTTTGTTGTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000107437.2
CDS-3UTR CAA 90 bp	TGGTGTCAGGACAACAAAGGTAGGAGGCATTTAGTACAGGAAAAAGTTAACATGCTCCTGGCAGGGACTTaGATCACAGCCCTGCTCAGA	+
Preference number: 5 (lower is better) Translates to: WCQDNKGRRHLVQEKVNMLLAGT*ITALLR Trigger: TCTGAGCAGGGCTGTGATCAAAGTCCCTGCCAGGAG...CATGTTAACTTTTTCCTGTACTAAATGCCTCCTACCTTTGTTGTCCTGACACCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000107437.2
CDS-3UTR CAA 90 bp	AACAAAGGTAGGAGGCATTTAGTACAGGAAAAAGTTAACATGGATGAGAAGGTTAGGGGCCACAGCAAGTaGTACGGCAGCAAGTGGTCT	+
Preference number: 5 (lower is better) Translates to: NKGRRHLVQEKVNMDEKVRGHSK*YGSKWS Trigger: AGACCACTTGCTGCCGTACAACTTGCTGTGGCCCCT...AACCTTCTCATCCATGTTAACTTTTTCCTGTACTAAATGCCTCCTACCTTTGTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000107437.2

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