Pregenerated sensors for KRTAP4-13 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000048294

Ensembl transcript IDs: ENSMUST00000050106.5

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR CCA 90 bp	ACAGATACTAAGCAGGCTGGAGTGTGGCAAATAGTTGTTGTCCAAATCAATCTCGACTCAGAACACACATaGACTACATTAGGAACTATG	+
Preference number: 2 (lower is better) Translates to: TDTKQAGVWQIVVVQINLDSEHT*TTLGTM Trigger: CATAGTTCCTAATGTAGTCCATGTGTGTTCTGAGTC...GAGATTGATTTGGACAACAACTATTTGCCACACTCCAGCCTGCTTAGTATCTGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050106.5
CDS-3UTR CCA 90 bp	CTCATTTGTATCAGAGGCTTTAGAATGAGCCTCTTGGGACTCAGAACACACATGACCACTAGAACAGGCTaGGCGGCAGCAAGTGGTCCT	+
Preference number: 4 (lower is better) Translates to: LICIRGFRMSLLGLRTHMTTRTG*AAASGP Trigger: AGGACCACTTGCTGCCGCCCAGCCTGTTCTAGTGGT...CATGTGTGTTCTGAGTCCCAAGAGGCTCATTCTAAAGCCTCTGATACAAATGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050106.5
CDS-3UTR GCA 90 bp	GCAGGCTGGAGTGTGGCAAATAGTTGTTGTCCAAATCAATCTCATTTGTATCAGGACAACAGCTGGAGATaGAGCACTGGGGTCTGCAAC	+
Preference number: 4 (lower is better) Translates to: AGWSVANSCCPNQSHLYQDNSWR*STGVCN Trigger: GTTGCAGACCCCAGTGCTGCATCTCCAGCTGTTGTC...CTGATACAAATGAGATTGATTTGGACAACAACTATTTGCCACACTCCAGCCTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050106.5
3UTR CAA 72 bp	AATCTCATTTGTATCAGAGGCTTTAGAATGAGCCTCTaGGGACTCAGAACACACATGGACTACATTAGGAAC	+
Preference number: 4 (lower is better) Translates to: NLICIRGFRMSL*GLRTHMDYIRN Trigger: GTTCCTAATGTAGTCCATGTGTGTTCTGAGTCCCAAGAGGCTCATTCTAAAGCCTCTGATACAAATGAGATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050106.5
CDS CCA 90 bp	TGGGTCTGCAGCAGCTGGACACACAGCAGCTGGGGCGGCAGCAGGTaGTTTGGCAGCAGCTGGGCTGGCAGCAGCTTTGACCACAGCCCT	+
Preference number: 5 (lower is better) Translates to: WVCSSWTHSSWGGSR*FGSSWAGSSFDHSP Trigger: AGGGCTGTGGTCAAAGCTGCTGCCAGCCCAGCTGCTGCCAAACCACCTGCTGCCGCCCCAGCTGCTGTGTGTCCAGCTGCTGCAGACCCA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050106.5
CDS-3UTR CAA 90 bp	GCTGGAGTGTGGCAAATAGTTGTTGTCCAAATCAATCTCATTTGTATCAGAGGCGGGCTGGCAGCAGCTTaGACCACAGCCCTCCTCAGA	+
Preference number: 5 (lower is better) Translates to: AGVWQIVVVQINLICIRGGLAAA*TTALLR Trigger: TCTGAGGAGGGCTGTGGTCAAAGCTGCTGCCAGCCC...GCCTCTGATACAAATGAGATTGATTTGGACAACAACTATTTGCCACACTCCAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050106.5
CDS CAA 90 bp	TCTGCAGCAGCTGGACACACAGCAGCTGGGGCGGCAGCAGGTGGTTaGGCAGCAGCTGGGCTGGCAGCAGCTTTGACCACAGCCCTCCTC	+
Preference number: 6 (lower is better) Translates to: SAAAGHTAAGAAAGG*AAAGLAAALTTALL Trigger: GAGGAGGGCTGTGGTCAAAGCTGCTGCCAGCCCAGCTGCTGCCAAACCACCTGCTGCCGCCCCAGCTGCTGTGTGTCCAGCTGCTGCAGA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050106.5

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